Query psy149
Match_columns 86
No_of_seqs 101 out of 193
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 23:39:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1625|consensus 99.9 1.4E-26 3.1E-31 189.0 8.3 76 10-85 343-418 (600)
2 COG5214 POL12 DNA polymerase a 99.9 1.1E-21 2.4E-26 157.8 7.7 81 2-82 299-383 (581)
3 PF04042 DNA_pol_E_B: DNA poly 99.6 3.2E-16 6.9E-21 110.9 1.9 73 10-82 1-76 (209)
4 PF10686 DUF2493: Protein of u 89.2 1.3 2.7E-05 27.5 4.7 38 6-47 2-39 (71)
5 PRK11340 phosphodiesterase Yae 88.6 1.4 3.1E-05 32.7 5.5 48 6-54 48-95 (271)
6 PRK04036 DNA polymerase II sma 88.5 1.1 2.3E-05 36.7 5.2 50 5-54 241-299 (504)
7 COG5493 Uncharacterized conser 87.7 0.53 1.1E-05 35.6 2.7 29 28-56 184-212 (231)
8 PRK03170 dihydrodipicolinate s 86.3 0.99 2.1E-05 33.7 3.5 37 12-48 8-44 (292)
9 cd00950 DHDPS Dihydrodipicolin 85.1 1.2 2.7E-05 32.9 3.5 37 12-48 7-43 (284)
10 cd00408 DHDPS-like Dihydrodipi 84.4 1.4 3E-05 32.4 3.5 34 14-47 6-39 (281)
11 TIGR00619 sbcd exonuclease Sbc 84.1 1.5 3.3E-05 32.4 3.7 32 25-56 25-56 (253)
12 PRK03620 5-dehydro-4-deoxygluc 83.6 1.5 3.3E-05 33.2 3.5 37 11-47 13-49 (303)
13 PLN02417 dihydrodipicolinate s 83.4 1.6 3.4E-05 32.8 3.5 35 14-48 10-44 (280)
14 cd00951 KDGDH 5-dehydro-4-deox 83.3 1.6 3.4E-05 32.8 3.5 34 14-47 9-42 (289)
15 cd07385 MPP_YkuE_C Bacillus su 83.2 3.1 6.8E-05 28.9 4.8 47 8-55 2-48 (223)
16 TIGR03249 KdgD 5-dehydro-4-deo 82.2 1.9 4E-05 32.5 3.5 34 14-47 14-47 (296)
17 cd00954 NAL N-Acetylneuraminic 81.7 2 4.3E-05 32.2 3.5 34 15-48 10-44 (288)
18 PRK04147 N-acetylneuraminate l 81.5 2.1 4.5E-05 32.2 3.5 36 12-47 10-46 (293)
19 cd07401 MPP_TMEM62_N Homo sapi 81.2 4.3 9.3E-05 29.9 5.1 28 28-55 22-49 (256)
20 TIGR02313 HpaI-NOT-DapA 2,4-di 80.4 2.3 5E-05 32.2 3.4 34 14-47 9-42 (294)
21 TIGR00683 nanA N-acetylneurami 80.0 2.4 5.3E-05 32.0 3.5 33 15-47 10-43 (290)
22 PF00701 DHDPS: Dihydrodipicol 79.9 1.8 3.8E-05 32.2 2.7 38 11-48 7-44 (289)
23 COG0329 DapA Dihydrodipicolina 79.3 2.6 5.7E-05 32.2 3.5 45 15-69 14-59 (299)
24 TIGR00674 dapA dihydrodipicoli 77.8 3.2 6.9E-05 31.0 3.5 34 14-47 7-40 (285)
25 PF07788 DUF1626: Protein of u 76.6 2.8 6E-05 26.4 2.4 29 25-53 31-59 (70)
26 cd07366 3MGA_Dioxygenase Subun 76.5 2.4 5.1E-05 33.3 2.6 31 26-56 73-108 (328)
27 TIGR00583 mre11 DNA repair pro 76.5 2.8 6.2E-05 33.7 3.1 34 25-58 28-61 (405)
28 PF06838 Met_gamma_lyase: Meth 76.1 2.5 5.4E-05 34.5 2.6 44 13-56 162-209 (403)
29 cd00953 KDG_aldolase KDG (2-ke 75.9 3.5 7.6E-05 30.9 3.3 32 15-47 10-41 (279)
30 cd07365 MhpB_like Subunit B of 75.8 2.6 5.7E-05 32.7 2.7 22 28-49 31-52 (310)
31 PRK10966 exonuclease subunit S 75.6 3.8 8.3E-05 32.7 3.6 29 28-56 28-56 (407)
32 PRK13363 protocatechuate 4,5-d 74.8 3.3 7.3E-05 32.6 3.0 22 27-48 76-97 (335)
33 PHA02546 47 endonuclease subun 74.5 4.6 9.9E-05 31.1 3.7 29 26-54 26-54 (340)
34 COG0420 SbcD DNA repair exonuc 73.9 3.7 8E-05 31.7 3.0 35 24-58 25-59 (390)
35 cd00840 MPP_Mre11_N Mre11 nucl 73.0 5 0.00011 27.6 3.2 30 25-54 27-56 (223)
36 PF03808 Glyco_tran_WecB: Glyc 71.8 8.6 0.00019 26.8 4.3 33 7-45 74-107 (172)
37 cd02071 MM_CoA_mut_B12_BD meth 71.6 7.9 0.00017 25.4 3.8 23 25-47 36-58 (122)
38 COG2350 Uncharacterized protei 71.2 5.1 0.00011 26.2 2.8 28 42-71 36-67 (92)
39 TIGR00696 wecB_tagA_cpsF bacte 71.2 8.2 0.00018 27.5 4.1 33 7-45 74-106 (177)
40 cd06533 Glyco_transf_WecG_TagA 71.1 8.5 0.00018 26.9 4.1 33 7-45 72-105 (171)
41 CHL00073 chlN photochlorophyll 70.7 5.2 0.00011 32.8 3.3 33 27-62 379-411 (457)
42 cd07359 PCA_45_Doxase_B_like S 69.9 5.5 0.00012 29.5 3.1 23 26-48 31-53 (271)
43 PRK13370 mhpB 3-(2,3-dihydroxy 69.2 4.6 9.9E-05 31.4 2.6 23 26-48 29-51 (313)
44 PF02310 B12-binding: B12 bind 69.0 5.9 0.00013 25.0 2.7 22 25-46 65-86 (121)
45 cd07368 PhnC_Bs_like PhnC is a 68.8 5.9 0.00013 29.9 3.1 22 26-47 33-54 (277)
46 cd07386 MPP_DNA_pol_II_small_a 67.3 8.1 0.00018 27.9 3.5 28 26-53 17-49 (243)
47 PF08660 Alg14: Oligosaccharid 67.1 6.5 0.00014 27.8 2.8 16 33-48 86-101 (170)
48 PRK13373 putative dioxygenase; 66.3 5.4 0.00012 31.9 2.5 23 26-48 33-55 (344)
49 PF08759 DUF1792: Domain of un 66.2 6.1 0.00013 29.9 2.6 25 24-48 151-177 (225)
50 PRK13364 protocatechuate 4,5-d 66.2 5.9 0.00013 30.3 2.6 23 25-47 34-56 (278)
51 PRK13358 protocatechuate 4,5-d 65.9 6 0.00013 29.4 2.6 23 26-48 29-51 (269)
52 cd00952 CHBPH_aldolase Trans-o 65.8 8.2 0.00018 29.4 3.4 33 15-47 11-50 (309)
53 TIGR00215 lpxB lipid-A-disacch 65.7 7.8 0.00017 30.1 3.3 22 30-52 80-101 (385)
54 cd07400 MPP_YydB Bacillus subt 64.8 9.7 0.00021 24.7 3.2 27 28-54 24-50 (144)
55 cd00842 MPP_ASMase acid sphing 64.2 8.7 0.00019 28.3 3.2 43 12-54 38-83 (296)
56 PTZ00235 DNA polymerase epsilo 63.6 17 0.00037 28.4 4.8 64 8-74 28-96 (291)
57 cd07320 Extradiol_Dioxygenase_ 63.1 8.7 0.00019 27.9 3.0 25 27-51 25-49 (260)
58 COG1409 Icc Predicted phosphoh 62.3 8 0.00017 27.3 2.6 27 21-47 15-41 (301)
59 cd02067 B12-binding B12 bindin 61.7 8.3 0.00018 24.7 2.4 20 24-43 63-83 (119)
60 cd07951 ED_3B_N_AMMECR1 The N- 61.6 10 0.00022 27.7 3.1 21 28-48 27-47 (256)
61 cd07950 Gallate_Doxase_N The N 61.5 8 0.00017 29.4 2.6 23 25-47 34-56 (277)
62 PF14582 Metallophos_3: Metall 61.5 6.4 0.00014 30.4 2.1 41 7-52 5-45 (255)
63 PRK09453 phosphodiesterase; Pr 61.0 11 0.00024 25.9 3.0 30 23-52 11-40 (182)
64 PF02900 LigB: Catalytic LigB 60.4 7 0.00015 28.8 2.1 25 28-52 30-54 (272)
65 PF14359 DUF4406: Domain of un 60.3 32 0.00069 22.1 4.9 56 13-78 3-58 (92)
66 COG0707 MurG UDP-N-acetylgluco 60.2 14 0.00031 29.1 3.8 42 11-52 55-104 (357)
67 PRK13365 protocatechuate 4,5-d 59.9 8.9 0.00019 29.2 2.6 23 26-48 35-57 (279)
68 PHA02729 hypothetical protein; 59.8 11 0.00025 24.9 2.8 37 17-56 38-77 (94)
69 PRK11439 pphA serine/threonine 59.7 7.8 0.00017 27.8 2.2 31 23-53 27-58 (218)
70 TIGR03728 glyco_access_1 glyco 59.1 8.9 0.00019 29.8 2.5 26 24-49 169-196 (265)
71 cd07949 PCA_45_Doxase_B_like_1 59.1 10 0.00022 28.8 2.8 24 25-48 34-57 (276)
72 PRK13609 diacylglycerol glucos 59.0 8.8 0.00019 28.9 2.4 22 29-50 94-115 (380)
73 cd07395 MPP_CSTP1 Homo sapiens 58.3 38 0.00082 24.4 5.6 48 6-53 3-63 (262)
74 TIGR00640 acid_CoA_mut_C methy 57.7 32 0.0007 23.3 4.9 49 17-79 31-79 (132)
75 TIGR03568 NeuC_NnaA UDP-N-acet 57.6 28 0.0006 26.9 5.0 51 28-78 82-145 (365)
76 cd07364 PCA_45_Dioxygenase_B S 57.2 11 0.00023 28.7 2.7 34 25-58 34-72 (277)
77 cd00144 MPP_PPP_family phospho 57.1 10 0.00022 26.4 2.3 31 24-54 9-39 (225)
78 cd07410 MPP_CpdB_N Escherichia 57.1 18 0.00039 26.5 3.8 32 22-53 26-58 (277)
79 cd08165 MPP_MPPE1 human MPPE1 56.9 14 0.00031 25.3 3.0 28 27-54 26-53 (156)
80 PRK03692 putative UDP-N-acetyl 56.9 20 0.00044 26.8 4.0 33 7-45 130-163 (243)
81 cd07402 MPP_GpdQ Enterobacter 56.9 16 0.00034 25.7 3.3 30 25-54 24-55 (240)
82 PRK13367 protocatechuate 4,5-d 56.0 11 0.00023 30.9 2.6 19 30-48 39-57 (420)
83 PRK13366 protocatechuate 4,5-d 55.9 11 0.00024 28.9 2.6 34 25-58 34-72 (284)
84 cd07391 MPP_PF1019 Pyrococcus 55.8 19 0.00041 24.6 3.5 29 26-54 28-56 (172)
85 TIGR03729 acc_ester putative p 55.7 16 0.00034 26.2 3.2 25 28-52 21-45 (239)
86 PRK10878 hypothetical protein; 55.7 0.9 2E-05 28.6 -2.9 16 44-59 6-21 (72)
87 cd02067 B12-binding B12 bindin 55.5 18 0.00038 23.1 3.1 21 26-46 37-57 (119)
88 cd07396 MPP_Nbla03831 Homo sap 55.3 11 0.00024 27.7 2.4 30 25-54 26-55 (267)
89 COG1423 ATP-dependent DNA liga 55.0 17 0.00038 29.5 3.6 50 2-58 95-157 (382)
90 COG1922 WecG Teichoic acid bio 54.6 22 0.00048 27.2 4.0 32 8-45 135-167 (253)
91 cd01829 SGNH_hydrolase_peri2 S 54.5 64 0.0014 21.7 7.1 55 28-82 48-105 (200)
92 PRK13372 pcmA protocatechuate 54.1 12 0.00026 30.9 2.6 16 33-48 189-204 (444)
93 cd07367 CarBb CarBb is the B s 53.9 13 0.00028 27.9 2.6 23 26-48 29-51 (268)
94 PF13778 DUF4174: Domain of un 53.9 62 0.0013 21.4 6.6 61 3-73 39-108 (118)
95 PHA02239 putative protein phos 53.1 16 0.00035 27.0 3.0 29 24-52 12-42 (235)
96 cd07392 MPP_PAE1087 Pyrobaculu 52.5 18 0.00039 24.0 2.9 29 24-54 10-38 (188)
97 PRK00166 apaH diadenosine tetr 51.6 14 0.00031 28.0 2.5 30 24-53 12-42 (275)
98 PRK13608 diacylglycerol glucos 51.5 15 0.00032 28.3 2.6 22 29-50 94-115 (391)
99 cd00838 MPP_superfamily metall 51.3 32 0.00069 20.6 3.7 23 33-55 20-42 (131)
100 cd07373 2A5CPDO_A The alpha su 51.2 22 0.00048 26.6 3.5 26 26-51 29-54 (271)
101 PF14606 Lipase_GDSL_3: GDSL-l 51.0 33 0.00071 24.9 4.2 69 9-81 62-131 (178)
102 COG1889 NOP1 Fibrillarin-like 50.9 47 0.001 25.4 5.1 29 23-55 108-136 (231)
103 PF05582 Peptidase_U57: YabG p 50.7 17 0.00037 28.5 2.8 17 31-47 146-162 (287)
104 cd07383 MPP_Dcr2 Saccharomyces 50.6 59 0.0013 22.5 5.4 30 26-55 28-57 (199)
105 PF01973 MAF_flag10: Protein o 50.2 25 0.00055 23.9 3.4 9 8-16 26-34 (170)
106 KOG0338|consensus 50.2 16 0.00036 31.5 2.9 51 33-83 296-357 (691)
107 PF08261 Carcinustatin: Carcin 49.8 6.8 0.00015 15.2 0.3 6 14-19 1-6 (8)
108 PRK15118 universal stress glob 49.7 22 0.00047 22.9 2.9 21 25-45 89-109 (144)
109 COG2039 Pcp Pyrrolidone-carbox 49.3 18 0.00038 27.2 2.6 23 26-48 47-69 (207)
110 KOG3861|consensus 49.1 19 0.00042 29.3 3.0 39 6-48 51-89 (438)
111 TIGR01551 major_capsid_P2 phag 48.9 25 0.00054 28.0 3.6 47 13-59 179-236 (327)
112 TIGR02855 spore_yabG sporulati 48.8 18 0.0004 28.3 2.8 18 30-47 144-161 (283)
113 cd07422 MPP_ApaH Escherichia c 48.4 17 0.00036 27.4 2.4 30 24-53 10-40 (257)
114 cd07362 HPCD_like Class III ex 48.2 22 0.00047 26.8 3.0 24 25-48 29-52 (272)
115 cd07393 MPP_DR1119 Deinococcus 47.8 22 0.00048 25.6 2.9 26 27-52 27-54 (232)
116 KOG2852|consensus 47.5 11 0.00024 30.4 1.4 13 8-20 198-210 (380)
117 cd07372 2A5CPDO_B The beta sub 47.5 23 0.0005 27.2 3.1 24 26-49 37-60 (294)
118 PF02684 LpxB: Lipid-A-disacch 47.3 21 0.00045 28.5 2.9 19 28-46 71-89 (373)
119 TIGR00668 apaH bis(5'-nucleosy 46.9 19 0.00042 27.8 2.6 30 24-53 12-42 (279)
120 cd07388 MPP_Tt1561 Thermus the 46.7 24 0.00051 26.1 3.0 42 7-53 4-45 (224)
121 KOG3818|consensus 46.5 13 0.00029 31.2 1.8 30 24-53 298-327 (525)
122 cd07361 MEMO_like Memo (mediat 46.0 17 0.00036 26.9 2.1 13 36-48 61-73 (266)
123 cd07370 HPCD The Class III ext 46.0 12 0.00026 28.0 1.4 25 26-50 32-56 (280)
124 cd01830 XynE_like SGNH_hydrola 45.8 80 0.0017 21.7 5.4 54 28-82 62-116 (204)
125 PF00149 Metallophos: Calcineu 45.8 46 0.00099 19.9 3.8 29 28-56 20-48 (200)
126 PRK03881 hypothetical protein; 45.8 23 0.00051 28.7 3.1 23 26-48 32-54 (467)
127 cd07384 MPP_Cdc1_like Saccharo 45.2 33 0.00071 23.8 3.4 28 28-55 34-61 (171)
128 PF10996 Beta-Casp: Beta-Casp 44.9 39 0.00085 21.5 3.5 35 9-48 82-116 (126)
129 PF12850 Metallophos_2: Calcin 44.7 24 0.00053 22.6 2.5 26 24-51 12-37 (156)
130 cd07425 MPP_Shelphs Shewanella 44.6 21 0.00045 25.6 2.4 30 24-53 9-46 (208)
131 PRK09982 universal stress prot 44.2 69 0.0015 20.9 4.7 20 26-45 90-109 (142)
132 cd07369 PydA_Rs_like PydA is a 43.8 22 0.00048 27.9 2.6 23 25-47 32-54 (329)
133 COG1091 RfbD dTDP-4-dehydrorha 43.7 36 0.00078 26.4 3.7 37 18-54 29-65 (281)
134 TIGR01133 murG undecaprenyldip 43.5 30 0.00064 25.2 3.1 21 30-50 81-101 (348)
135 cd07424 MPP_PrpA_PrpB PrpA and 43.3 23 0.00049 25.0 2.4 30 24-53 12-42 (207)
136 TIGR01763 MalateDH_bact malate 43.1 30 0.00066 26.3 3.2 36 10-45 73-115 (305)
137 PRK13195 pyrrolidone-carboxyla 43.0 27 0.00058 26.1 2.8 27 28-54 50-76 (222)
138 cd08166 MPP_Cdc1_like_1 unchar 43.0 31 0.00068 25.2 3.1 24 31-54 34-57 (195)
139 PRK10116 universal stress prot 42.9 33 0.00071 21.9 2.9 20 26-45 89-108 (142)
140 KOG1257|consensus 42.6 25 0.00054 30.1 2.8 21 25-45 375-395 (582)
141 PF06925 MGDG_synth: Monogalac 42.2 32 0.00069 23.4 2.9 22 28-49 78-99 (169)
142 PRK13193 pyrrolidone-carboxyla 42.2 26 0.00057 25.7 2.6 32 23-54 43-75 (209)
143 COG1408 Predicted phosphohydro 41.9 37 0.00079 26.0 3.4 27 26-52 60-86 (284)
144 cd00844 MPP_Dbr1_N Dbr1 RNA la 41.8 64 0.0014 24.3 4.7 48 5-55 26-84 (262)
145 COG1880 CdhB CO dehydrogenase/ 41.4 42 0.00092 24.5 3.5 42 11-52 66-121 (170)
146 PF00582 Usp: Universal stress 41.4 43 0.00092 20.1 3.2 21 26-46 89-109 (140)
147 PF05036 SPOR: Sporulation rel 41.4 49 0.0011 18.7 3.3 28 12-44 46-74 (76)
148 COG0803 LraI ABC-type metal io 41.1 44 0.00095 25.4 3.8 54 24-77 38-103 (303)
149 PF03167 UDG: Uracil DNA glyco 40.8 52 0.0011 20.9 3.6 22 28-49 75-96 (152)
150 cd02068 radical_SAM_B12_BD B12 40.7 23 0.00051 22.9 2.0 29 25-53 52-81 (127)
151 cd00845 MPP_UshA_N_like Escher 40.7 34 0.00074 24.3 3.0 32 23-54 20-52 (252)
152 cd04501 SGNH_hydrolase_like_4 40.6 93 0.002 20.6 5.0 15 33-47 53-67 (183)
153 cd07405 MPP_UshA_N Escherichia 40.5 61 0.0013 24.2 4.4 42 5-46 128-180 (285)
154 PF03721 UDPG_MGDP_dh_N: UDP-g 40.3 37 0.0008 24.0 3.1 36 10-45 80-118 (185)
155 PRK01021 lpxB lipid-A-disaccha 40.2 30 0.00064 29.7 2.9 19 27-45 298-316 (608)
156 TIGR03015 pepcterm_ATPase puta 40.0 43 0.00093 23.8 3.4 34 15-48 11-51 (269)
157 PRK15005 universal stress prot 39.8 40 0.00087 21.5 3.0 22 26-48 94-115 (144)
158 TIGR02370 pyl_corrinoid methyl 39.7 32 0.00069 24.6 2.7 20 26-45 122-141 (197)
159 TIGR02298 HpaD_Fe 3,4-dihydrox 39.7 30 0.00064 26.3 2.6 28 25-52 33-60 (282)
160 COG2875 CobM Precorrin-4 methy 39.6 34 0.00074 26.5 2.9 29 26-54 205-235 (254)
161 PF13941 MutL: MutL protein 39.3 26 0.00056 28.9 2.4 24 25-48 110-133 (457)
162 KOG1432|consensus 39.0 62 0.0013 26.4 4.4 24 29-52 89-113 (379)
163 cd07399 MPP_YvnB Bacillus subt 38.8 47 0.001 23.6 3.4 27 28-54 24-50 (214)
164 KOG2442|consensus 38.8 28 0.0006 29.5 2.5 23 1-23 386-408 (541)
165 PLN02533 probable purple acid 38.6 67 0.0014 25.8 4.6 45 29-81 155-199 (427)
166 PF02350 Epimerase_2: UDP-N-ac 38.4 31 0.00067 26.7 2.6 51 28-78 56-123 (346)
167 PF03464 eRF1_2: eRF1 domain 2 38.2 35 0.00075 22.7 2.5 14 36-49 70-83 (133)
168 COG4100 Cystathionine beta-lya 38.2 41 0.00089 27.4 3.3 43 14-56 174-220 (416)
169 cd01145 TroA_c Periplasmic bin 37.8 69 0.0015 22.6 4.2 52 25-76 9-72 (203)
170 PRK09968 serine/threonine-spec 37.8 28 0.00061 25.0 2.2 30 23-52 25-55 (218)
171 cd02069 methionine_synthase_B1 37.6 36 0.00077 24.8 2.7 21 25-45 125-145 (213)
172 cd06346 PBP1_ABC_ligand_bindin 37.5 61 0.0013 23.6 4.0 32 13-48 170-201 (312)
173 PF07355 GRDB: Glycine/sarcosi 37.5 41 0.0009 27.0 3.2 46 7-54 49-94 (349)
174 COG0763 LpxB Lipid A disacchar 37.3 34 0.00074 27.8 2.8 18 29-46 75-92 (381)
175 PRK02261 methylaspartate mutas 37.3 39 0.00085 23.0 2.7 20 26-45 41-60 (137)
176 COG0683 LivK ABC-type branched 37.2 66 0.0014 24.5 4.2 41 6-51 175-215 (366)
177 cd07371 2A5CPDO_AB The alpha a 37.2 43 0.00093 25.0 3.1 23 26-48 26-48 (268)
178 PRK15456 universal stress prot 37.0 45 0.00098 21.5 2.9 22 26-48 92-113 (142)
179 cd07413 MPP_PA3087 Pseudomonas 36.9 31 0.00068 24.9 2.3 30 24-53 10-47 (222)
180 TIGR03011 sulf_tusB_dsrH sulfu 36.6 39 0.00085 21.0 2.5 29 11-47 2-30 (94)
181 PF10035 DUF2179: Uncharacteri 36.6 70 0.0015 18.0 3.4 41 8-48 3-49 (55)
182 TIGR00040 yfcE phosphoesterase 36.6 44 0.00095 22.2 2.9 27 24-50 12-39 (158)
183 cd07410 MPP_CpdB_N Escherichia 36.6 62 0.0014 23.7 3.9 43 5-47 138-191 (277)
184 COG0299 PurN Folate-dependent 36.5 38 0.00083 25.3 2.7 19 29-47 69-87 (200)
185 cd03146 GAT1_Peptidase_E Type 36.5 64 0.0014 23.0 3.9 37 9-45 1-37 (212)
186 cd07423 MPP_PrpE Bacillus subt 36.4 34 0.00074 24.6 2.4 29 24-52 12-50 (234)
187 cd00293 USP_Like Usp: Universa 36.2 50 0.0011 19.6 2.9 19 27-45 81-99 (130)
188 PF04016 DUF364: Domain of unk 36.1 40 0.00086 23.2 2.6 27 22-50 72-98 (147)
189 PF01470 Peptidase_C15: Pyrogl 35.9 27 0.00058 25.2 1.8 27 24-50 44-71 (202)
190 PRK13196 pyrrolidone-carboxyla 35.9 42 0.00091 24.6 2.9 26 24-49 45-71 (211)
191 PRK05335 tRNA (uracil-5-)-meth 35.9 39 0.00085 27.7 2.9 39 9-59 129-167 (436)
192 PF00072 Response_reg: Respons 35.8 40 0.00086 20.1 2.3 19 27-45 31-49 (112)
193 PRK13194 pyrrolidone-carboxyla 35.7 39 0.00084 24.8 2.6 27 23-49 43-70 (208)
194 PRK11148 cyclic 3',5'-adenosin 35.6 41 0.00089 24.7 2.8 48 5-52 12-68 (275)
195 KOG1342|consensus 35.4 27 0.00059 28.8 1.9 26 57-82 227-252 (425)
196 PF04392 ABC_sub_bind: ABC tra 35.4 29 0.00064 25.6 2.0 24 24-47 44-67 (294)
197 PF07297 DPM2: Dolichol phosph 35.3 16 0.00036 23.4 0.6 13 45-57 26-38 (78)
198 TIGR01854 lipid_A_lpxH UDP-2,3 35.2 41 0.00088 24.1 2.7 25 28-52 17-43 (231)
199 cd07406 MPP_CG11883_N Drosophi 35.0 59 0.0013 23.8 3.6 34 20-53 18-52 (257)
200 cd02070 corrinoid_protein_B12- 35.0 43 0.00093 23.8 2.7 21 25-45 119-139 (201)
201 cd06366 PBP1_GABAb_receptor Li 34.9 83 0.0018 23.1 4.3 40 12-53 167-206 (350)
202 TIGR02201 heptsyl_trn_III lipo 34.9 85 0.0019 23.4 4.4 39 10-48 184-222 (344)
203 PRK00025 lpxB lipid-A-disaccha 34.7 47 0.001 24.7 3.0 18 30-47 76-93 (380)
204 cd03786 GT1_UDP-GlcNAc_2-Epime 34.6 50 0.0011 24.2 3.1 23 27-49 76-98 (363)
205 smart00865 Tubulin_C Tubulin/F 34.5 1.1E+02 0.0024 18.7 4.7 38 10-52 57-95 (120)
206 TIGR03445 mycothiol_MshB 1D-my 34.5 59 0.0013 24.8 3.5 23 27-49 111-133 (284)
207 PF07555 NAGidase: beta-N-acet 34.5 1E+02 0.0023 24.0 5.0 41 26-76 56-96 (306)
208 PRK13625 bis(5'-nucleosyl)-tet 34.2 37 0.0008 24.8 2.3 29 24-52 12-49 (245)
209 TIGR00137 gid_trmFO tRNA:m(5)U 34.2 72 0.0016 26.1 4.2 37 9-54 128-168 (433)
210 cd01833 XynB_like SGNH_hydrola 34.2 1.2E+02 0.0026 19.5 4.6 22 26-47 64-85 (157)
211 cd01020 TroA_b Metal binding p 34.2 70 0.0015 23.5 3.8 53 25-77 9-74 (264)
212 PF00551 Formyl_trans_N: Formy 33.8 48 0.001 23.1 2.8 24 29-52 69-94 (181)
213 PF13472 Lipase_GDSL_2: GDSL-l 33.8 23 0.0005 22.4 1.1 44 35-83 57-100 (179)
214 cd03785 GT1_MurG MurG is an N- 33.5 55 0.0012 23.8 3.2 21 30-50 80-100 (350)
215 TIGR00642 mmCoA_mut_beta methy 32.8 51 0.0011 28.2 3.2 36 12-47 519-554 (619)
216 cd01832 SGNH_hydrolase_like_1 32.7 1.3E+02 0.0029 19.8 4.8 22 31-52 59-80 (185)
217 cd07409 MPP_CD73_N CD73 ecto-5 32.7 1E+02 0.0023 22.8 4.6 42 5-46 139-189 (281)
218 TIGR01917 gly_red_sel_B glycin 32.6 54 0.0012 27.1 3.2 42 11-54 49-90 (431)
219 PRK14820 NADH dehydrogenase su 32.4 1.3E+02 0.0028 22.0 4.9 36 5-47 71-108 (180)
220 PF07521 RMMBL: RNA-metabolisi 32.3 59 0.0013 17.8 2.5 18 29-46 21-38 (43)
221 COG2099 CobK Precorrin-6x redu 32.3 26 0.00057 27.1 1.3 31 6-45 172-202 (257)
222 cd06368 PBP1_iGluR_non_NMDA_li 32.0 55 0.0012 23.6 2.9 24 27-50 168-191 (324)
223 TIGR01526 nadR_NMN_Atrans nico 31.9 1.7E+02 0.0037 22.5 5.8 47 30-80 259-308 (325)
224 cd05781 DNA_polB_B3_exo DEDDy 31.9 50 0.0011 23.3 2.6 23 22-44 46-68 (188)
225 TIGR01918 various_sel_PB selen 31.8 57 0.0012 27.0 3.2 43 10-54 48-90 (431)
226 PF13477 Glyco_trans_4_2: Glyc 31.7 79 0.0017 19.9 3.3 26 23-48 58-83 (139)
227 cd05785 DNA_polB_like2_exo Unc 31.7 46 0.001 24.0 2.5 21 24-44 58-78 (207)
228 PHA02538 N capsid protein; Pro 31.6 55 0.0012 26.3 3.1 46 14-59 191-247 (348)
229 TIGR00236 wecB UDP-N-acetylglu 31.3 61 0.0013 24.2 3.1 22 28-49 75-96 (365)
230 cd05776 DNA_polB_alpha_exo ina 31.3 48 0.001 24.2 2.5 19 26-44 84-102 (234)
231 cd04121 Rab40 Rab40 subfamily. 31.2 53 0.0011 23.0 2.6 66 17-82 86-171 (189)
232 COG1284 Uncharacterized conser 30.6 74 0.0016 24.6 3.6 43 5-47 227-275 (289)
233 cd01823 SEST_like SEST_like. A 30.6 1.2E+02 0.0025 21.5 4.4 26 26-51 131-158 (259)
234 PRK15411 rcsA colanic acid cap 30.6 52 0.0011 23.3 2.6 21 26-46 34-54 (207)
235 cd02065 B12-binding_like B12 b 30.1 65 0.0014 20.1 2.7 21 26-46 37-57 (125)
236 CHL00175 minD septum-site dete 30.1 1E+02 0.0022 22.5 4.1 31 22-52 109-140 (281)
237 cd01988 Na_H_Antiporter_C The 30.1 72 0.0016 19.6 2.9 20 26-45 81-100 (132)
238 COG2248 Predicted hydrolase (m 30.1 49 0.0011 26.2 2.5 24 27-50 189-212 (304)
239 cd06382 PBP1_iGluR_Kainate N-t 29.8 62 0.0013 23.6 2.9 21 28-48 170-190 (327)
240 cd06363 PBP1_Taste_receptor Li 29.7 55 0.0012 25.1 2.7 25 27-51 222-246 (410)
241 PF01624 MutS_I: MutS domain I 29.4 58 0.0013 21.0 2.4 21 26-46 1-21 (113)
242 PF12683 DUF3798: Protein of u 29.3 25 0.00055 27.4 0.8 45 27-71 74-118 (275)
243 COG0859 RfaF ADP-heptose:LPS h 29.3 1.3E+02 0.0029 22.8 4.7 41 8-48 176-217 (334)
244 TIGR00504 pyro_pdase pyrogluta 29.3 62 0.0013 23.7 2.8 27 24-50 42-69 (212)
245 COG1206 Gid NAD(FAD)-utilizing 29.3 81 0.0018 26.1 3.7 41 9-61 131-171 (439)
246 PRK09620 hypothetical protein; 29.2 1.2E+02 0.0027 22.2 4.4 43 7-50 3-54 (229)
247 cd07380 MPP_CWF19_N Schizosacc 29.1 68 0.0015 22.2 2.9 18 38-55 25-42 (150)
248 cd07378 MPP_ACP5 Homo sapiens 28.9 65 0.0014 23.2 2.9 25 27-51 19-44 (277)
249 cd06360 PBP1_alkylbenzenes_lik 28.9 67 0.0015 23.2 2.9 22 28-49 178-199 (336)
250 COG2129 Predicted phosphoester 28.7 65 0.0014 24.5 2.9 28 23-50 14-41 (226)
251 cd06342 PBP1_ABC_LIVBP_like Ty 28.7 1.3E+02 0.0027 21.7 4.3 22 27-48 178-199 (334)
252 cd01827 sialate_O-acetylestera 28.5 60 0.0013 21.6 2.5 24 26-49 93-117 (188)
253 PRK12863 YciI-like protein; Re 28.5 67 0.0014 20.1 2.5 24 30-54 23-46 (94)
254 cd07952 ED_3B_like Uncharacter 28.5 1.1E+02 0.0023 22.6 4.0 30 22-51 16-47 (256)
255 cd05777 DNA_polB_delta_exo DED 28.4 60 0.0013 23.4 2.6 21 24-44 71-91 (230)
256 PLN02331 phosphoribosylglycina 28.4 64 0.0014 23.6 2.7 19 29-47 68-86 (207)
257 PRK10422 lipopolysaccharide co 28.4 1.3E+02 0.0028 22.7 4.5 39 10-48 186-224 (352)
258 cd00841 MPP_YfcE Escherichia c 28.3 68 0.0015 20.9 2.7 27 25-53 12-38 (155)
259 TIGR01319 glmL_fam conserved h 27.8 50 0.0011 27.5 2.3 21 28-48 109-129 (463)
260 TIGR00162 conserved hypothetic 27.8 1.1E+02 0.0025 21.9 3.9 45 6-50 13-58 (188)
261 TIGR00936 ahcY adenosylhomocys 27.6 56 0.0012 26.4 2.5 38 10-47 60-114 (406)
262 PF03470 zf-XS: XS zinc finger 27.6 72 0.0016 18.3 2.3 21 16-37 2-23 (43)
263 cd06325 PBP1_ABC_uncharacteriz 27.5 1.4E+02 0.0031 20.7 4.3 38 5-48 32-69 (281)
264 PRK15401 alpha-ketoglutarate-d 27.5 1.6E+02 0.0035 21.8 4.8 49 4-52 54-135 (213)
265 PRK06411 NADH dehydrogenase su 27.3 1.6E+02 0.0034 21.6 4.6 36 5-47 72-109 (183)
266 cd01989 STK_N The N-terminal d 27.3 85 0.0018 20.0 3.0 20 26-45 90-109 (146)
267 PF14237 DUF4339: Domain of un 27.2 92 0.002 17.0 2.7 22 14-44 11-34 (45)
268 cd01987 USP_OKCHK USP domain i 27.0 88 0.0019 19.3 2.9 22 26-47 72-93 (124)
269 cd05784 DNA_polB_II_exo DEDDy 27.0 66 0.0014 23.0 2.6 20 25-44 52-71 (193)
270 cd06359 PBP1_Nba_like Type I p 27.0 83 0.0018 23.0 3.2 21 29-49 176-196 (333)
271 TIGR03669 urea_ABC_arch urea A 26.8 1.2E+02 0.0027 23.3 4.2 25 27-51 176-200 (374)
272 PF09822 ABC_transp_aux: ABC-t 26.6 1.7E+02 0.0036 21.4 4.7 40 6-49 196-235 (271)
273 PRK02842 light-independent pro 26.6 86 0.0019 24.9 3.4 31 27-60 348-378 (427)
274 PF03104 DNA_pol_B_exo1: DNA p 26.6 55 0.0012 23.9 2.2 21 24-44 222-242 (325)
275 COG5012 Predicted cobalamin bi 26.6 54 0.0012 24.9 2.1 20 26-45 142-161 (227)
276 TIGR00024 SbcD_rel_arch putati 26.5 74 0.0016 23.3 2.8 25 27-51 46-70 (225)
277 cd07411 MPP_SoxB_N Thermus the 26.2 81 0.0017 23.1 3.0 32 22-53 32-65 (264)
278 TIGR00758 UDG_fam4 uracil-DNA 26.1 71 0.0015 22.2 2.6 18 31-48 92-109 (173)
279 cd06329 PBP1_SBP_like_3 Peripl 26.1 1.1E+02 0.0024 22.5 3.7 22 23-47 188-209 (342)
280 PRK13197 pyrrolidone-carboxyla 25.9 79 0.0017 23.1 2.9 25 24-48 45-70 (215)
281 PF05125 Phage_cap_P2: Phage m 25.8 19 0.00041 28.7 -0.4 37 23-59 196-242 (333)
282 TIGR00639 PurN phosphoribosylg 25.8 80 0.0017 22.6 2.8 19 29-47 69-87 (190)
283 cd00636 TroA-like Helical back 25.8 70 0.0015 19.4 2.2 14 34-47 56-69 (148)
284 PLN02605 monogalactosyldiacylg 25.6 87 0.0019 23.8 3.1 22 30-51 91-112 (382)
285 TIGR03446 mycothiol_Mca mycoth 25.5 95 0.002 23.8 3.3 28 28-55 110-137 (283)
286 cd01831 Endoglucanase_E_like E 25.4 95 0.002 20.6 3.0 25 27-51 82-107 (169)
287 cd07381 MPP_CapA CapA and rela 25.4 1.8E+02 0.0038 20.8 4.6 42 4-46 129-181 (239)
288 cd06350 PBP1_GPCR_family_C_lik 25.3 85 0.0018 22.8 2.9 25 27-51 205-229 (348)
289 PLN02747 N-carbamolyputrescine 25.3 92 0.002 22.9 3.1 42 1-45 1-44 (296)
290 cd05160 DEDDy_DNA_polB_exo DED 25.2 77 0.0017 21.8 2.6 21 25-45 64-84 (199)
291 cd05780 DNA_polB_Kod1_like_exo 25.1 77 0.0017 22.2 2.6 20 25-44 57-76 (195)
292 cd01825 SGNH_hydrolase_peri1 S 25.0 2.1E+02 0.0045 18.8 5.1 25 25-49 80-105 (189)
293 cd06332 PBP1_aromatic_compound 25.0 96 0.0021 22.2 3.1 23 23-48 173-195 (333)
294 PF00102 Y_phosphatase: Protei 24.8 2.3E+02 0.0049 19.3 4.9 40 6-52 40-79 (235)
295 cd06379 PBP1_iGluR_NMDA_NR1 N- 24.7 86 0.0019 23.6 2.9 26 27-52 201-226 (377)
296 TIGR01957 nuoB_fam NADH-quinon 24.6 1.4E+02 0.003 20.9 3.8 36 5-47 55-92 (145)
297 PRK07259 dihydroorotate dehydr 24.6 1E+02 0.0022 23.0 3.3 34 10-51 15-48 (301)
298 COG1058 CinA Predicted nucleot 24.3 1.8E+02 0.0038 22.3 4.6 37 29-78 48-86 (255)
299 cd02072 Glm_B12_BD B12 binding 24.2 95 0.0021 21.3 2.8 20 26-45 37-56 (128)
300 cd02810 DHOD_DHPD_FMN Dihydroo 24.2 1E+02 0.0022 22.6 3.2 11 10-20 12-22 (289)
301 cd07404 MPP_MS158 Microscilla 24.2 40 0.00086 22.5 1.0 21 33-53 20-40 (166)
302 PF02807 ATP-gua_PtransN: ATP: 24.1 91 0.002 19.6 2.5 26 54-81 47-72 (76)
303 PF13483 Lactamase_B_3: Beta-l 24.0 1.7E+02 0.0038 19.3 4.1 17 28-44 144-160 (163)
304 TIGR03010 sulf_tusC_dsrF sulfu 24.0 1.5E+02 0.0033 19.1 3.7 41 8-50 2-42 (116)
305 PF14826 FACT-Spt16_Nlob: FACT 23.8 2.4E+02 0.0052 19.7 4.9 38 7-46 28-66 (163)
306 cd06269 PBP1_glutamate_recepto 23.8 1.4E+02 0.0031 20.4 3.7 23 26-48 182-204 (298)
307 KOG2774|consensus 23.7 29 0.00063 27.5 0.2 33 11-46 85-117 (366)
308 cd06349 PBP1_ABC_ligand_bindin 23.7 91 0.002 22.8 2.9 23 28-50 179-201 (340)
309 cd07382 MPP_DR1281 Deinococcus 23.6 1.9E+02 0.004 21.8 4.6 42 4-46 105-147 (255)
310 cd08183 Fe-ADH2 Iron-containin 23.6 1.1E+02 0.0025 23.6 3.5 26 22-47 58-83 (374)
311 smart00739 KOW KOW (Kyprides, 23.5 73 0.0016 15.0 1.6 13 8-20 6-18 (28)
312 cd07412 MPP_YhcR_N Bacillus su 23.4 1.7E+02 0.0037 21.8 4.3 43 4-46 145-198 (288)
313 PF00071 Ras: Ras family; Int 23.2 41 0.00088 21.6 0.8 62 17-78 79-161 (162)
314 PF08846 DUF1816: Domain of un 23.0 50 0.0011 20.6 1.2 24 35-58 14-37 (68)
315 COG0648 Nfo Endonuclease IV [D 23.0 2.4E+02 0.0051 21.9 5.1 56 12-72 141-198 (280)
316 PRK08057 cobalt-precorrin-6x r 22.9 91 0.002 23.4 2.8 22 29-56 55-76 (248)
317 PF12327 FtsZ_C: FtsZ family, 22.8 55 0.0012 20.9 1.4 43 7-54 38-81 (95)
318 cd06384 PBP1_NPR_B Ligand-bind 22.8 94 0.002 23.7 2.9 22 27-49 191-212 (399)
319 cd06348 PBP1_ABC_ligand_bindin 22.7 1E+02 0.0022 22.6 2.9 25 28-52 181-205 (344)
320 cd00839 MPP_PAPs purple acid p 22.6 2.5E+02 0.0054 20.3 5.0 24 29-52 21-46 (294)
321 cd06338 PBP1_ABC_ligand_bindin 22.5 1E+02 0.0022 22.5 2.9 24 28-51 185-208 (345)
322 TIGR01821 5aminolev_synth 5-am 22.4 2E+02 0.0043 21.9 4.6 30 7-38 177-206 (402)
323 TIGR00661 MJ1255 conserved hyp 22.4 94 0.002 23.1 2.8 23 27-49 81-103 (321)
324 PF13353 Fer4_12: 4Fe-4S singl 22.4 80 0.0017 20.1 2.1 29 23-51 36-66 (139)
325 cd06335 PBP1_ABC_ligand_bindin 22.4 1E+02 0.0023 22.8 3.0 35 13-51 171-205 (347)
326 cd06355 PBP1_FmdD_like Peripla 22.3 1.1E+02 0.0023 22.9 3.0 24 28-51 177-200 (348)
327 cd05779 DNA_polB_epsilon_exo D 22.3 90 0.0019 22.6 2.6 22 23-44 72-93 (204)
328 PF13528 Glyco_trans_1_3: Glyc 22.3 92 0.002 22.5 2.6 22 28-49 83-104 (318)
329 PRK11756 exonuclease III; Prov 22.3 1E+02 0.0022 22.3 2.8 21 27-47 14-34 (268)
330 PF13458 Peripla_BP_6: Peripla 22.2 1.2E+02 0.0027 21.7 3.3 24 26-49 177-200 (343)
331 cd01979 Pchlide_reductase_N Pc 22.1 1.1E+02 0.0024 23.9 3.2 32 27-61 333-364 (396)
332 PF13659 Methyltransf_26: Meth 22.1 66 0.0014 19.7 1.6 26 29-54 60-85 (117)
333 cd01137 PsaA Metal binding pro 22.1 1.1E+02 0.0025 22.9 3.1 53 24-76 23-87 (287)
334 PRK11573 hypothetical protein; 22.0 1.4E+02 0.0031 23.8 3.8 47 26-80 271-317 (413)
335 PLN02495 oxidoreductase, actin 21.9 1.1E+02 0.0024 24.6 3.2 34 10-51 24-57 (385)
336 PF03514 GRAS: GRAS domain fam 21.9 1E+02 0.0023 24.2 3.0 26 27-52 223-248 (374)
337 PTZ00198 60S ribosomal protein 21.8 37 0.00081 23.6 0.5 25 49-74 22-47 (122)
338 cd06270 PBP1_GalS_like Ligand 21.8 2.7E+02 0.0058 19.2 4.9 26 26-51 42-67 (268)
339 cd01016 TroA Metal binding pro 21.7 1.8E+02 0.0039 21.6 4.1 53 25-77 8-72 (276)
340 TIGR00655 PurU formyltetrahydr 21.7 99 0.0021 23.6 2.8 19 29-47 150-168 (280)
341 cd06337 PBP1_ABC_ligand_bindin 21.4 1.1E+02 0.0023 22.9 2.9 24 28-51 192-215 (357)
342 TIGR03590 PseG pseudaminic aci 21.3 97 0.0021 22.9 2.6 26 27-52 68-93 (279)
343 PF03372 Exo_endo_phos: Endonu 21.3 97 0.0021 20.4 2.4 20 28-47 18-37 (249)
344 cd01976 Nitrogenase_MoFe_alpha 21.3 1.3E+02 0.0028 23.9 3.5 17 28-44 358-374 (421)
345 KOG0086|consensus 21.2 2E+02 0.0044 21.4 4.2 66 17-82 89-175 (214)
346 cd02940 DHPD_FMN Dihydropyrimi 21.1 1.2E+02 0.0026 22.8 3.2 11 10-20 15-25 (299)
347 cd03309 CmuC_like CmuC_like. P 21.1 2E+02 0.0042 22.3 4.3 71 9-83 115-209 (321)
348 TIGR03018 pepcterm_TyrKin exop 21.0 1.4E+02 0.0031 20.8 3.4 45 7-52 114-162 (207)
349 PRK00726 murG undecaprenyldiph 20.9 1.2E+02 0.0026 22.4 3.1 20 30-49 82-101 (357)
350 PRK14817 NADH dehydrogenase su 20.9 2.7E+02 0.0059 20.4 4.8 36 5-47 73-110 (181)
351 PRK09426 methylmalonyl-CoA mut 20.9 1.9E+02 0.004 25.2 4.5 52 14-79 608-659 (714)
352 PF12847 Methyltransf_18: Meth 20.9 86 0.0019 18.9 2.0 38 7-45 70-108 (112)
353 cd06356 PBP1_Amide_Urea_BP_lik 20.8 1.2E+02 0.0025 22.4 3.0 23 27-49 175-197 (334)
354 cd01836 FeeA_FeeB_like SGNH_hy 20.8 2.3E+02 0.0049 18.9 4.2 24 29-52 54-80 (191)
355 cd04506 SGNH_hydrolase_YpmR_li 20.8 1E+02 0.0022 20.9 2.5 23 26-48 106-129 (204)
356 cd06358 PBP1_NHase Type I peri 20.8 1.2E+02 0.0026 22.2 3.0 25 28-52 176-200 (333)
357 PF06162 DUF976: Caenorhabditi 20.7 1E+02 0.0023 22.4 2.6 26 23-48 65-90 (166)
358 cd00047 PTPc Protein tyrosine 20.6 2.3E+02 0.005 19.8 4.4 39 7-52 40-78 (231)
359 PRK12446 undecaprenyldiphospho 20.6 1.1E+02 0.0023 23.6 2.8 20 32-51 84-103 (352)
360 PRK15454 ethanol dehydrogenase 20.4 1.7E+02 0.0036 23.1 3.9 26 22-47 89-114 (395)
361 cd06331 PBP1_AmiC_like Type I 20.4 1.2E+02 0.0027 22.1 3.0 25 28-52 176-200 (333)
362 cd04502 SGNH_hydrolase_like_7 20.4 2.6E+02 0.0057 18.3 4.5 15 37-51 48-62 (171)
363 KOG3488|consensus 20.3 32 0.0007 22.1 -0.1 10 45-54 28-37 (81)
364 cd06340 PBP1_ABC_ligand_bindin 20.3 1.8E+02 0.0039 21.5 3.9 34 14-51 178-211 (347)
365 PRK00994 F420-dependent methyl 20.3 1.5E+02 0.0032 23.3 3.4 28 22-49 42-70 (277)
366 cd00501 Peptidase_C15 Pyroglut 20.2 1.1E+02 0.0025 21.5 2.7 30 25-54 45-75 (194)
367 PRK10964 ADP-heptose:LPS hepto 20.2 2.3E+02 0.005 21.0 4.4 29 20-48 191-219 (322)
368 cd04724 Tryptophan_synthase_al 20.2 1.4E+02 0.0031 21.8 3.3 30 22-51 112-141 (242)
369 PRK15404 leucine ABC transport 20.1 1.2E+02 0.0025 23.1 2.9 21 28-48 205-225 (369)
370 TIGR01501 MthylAspMutase methy 20.1 1.3E+02 0.0028 20.7 2.9 20 26-45 39-58 (134)
371 PF01637 Arch_ATPase: Archaeal 20.1 89 0.0019 21.0 2.0 21 28-48 8-28 (234)
372 cd06328 PBP1_SBP_like_2 Peripl 20.1 1.8E+02 0.004 21.4 3.9 30 13-46 169-198 (333)
373 cd00762 NAD_bind_malic_enz NAD 20.0 51 0.0011 25.2 0.9 19 27-45 94-112 (254)
374 PF03949 Malic_M: Malic enzyme 20.0 50 0.0011 25.3 0.9 18 29-46 96-113 (255)
No 1
>KOG1625|consensus
Probab=99.93 E-value=1.4e-26 Score=189.01 Aligned_cols=76 Identities=47% Similarity=0.847 Sum_probs=73.4
Q ss_pred EEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhccccCCC
Q psy149 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQPLEKPG 85 (86)
Q Consensus 10 i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~~~~~~g 85 (86)
|||||||||++|||.|+||.|||+||+.++||||||+|||||++|++|++|.++.||+|+|+++|.+|++.+.+++
T Consensus 343 ivvasGPyt~sDnl~yepL~dll~~v~~~~pdvLIL~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~~~~~~ 418 (600)
T KOG1625|consen 343 IVVASGPYTASDNLSYEPLCDLLDYVNAERPDVLILFGPFLDSKHPLINKGALTITFDELFEKLILGILETLVGSK 418 (600)
T ss_pred EEEEecCccCccccchhHHHHHHHHHhcCCCCEEEEeccccCccChhhccCCcCccHHHHHHHHHHHHHHhccCCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987543
No 2
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.1e-21 Score=157.77 Aligned_cols=81 Identities=31% Similarity=0.514 Sum_probs=77.1
Q ss_pred CcCCCceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc----CCCHHHHHHHHHHHh
Q psy149 2 TLTRRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL----AETFEDFYVKLIDSI 77 (86)
Q Consensus 2 ~l~~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~----~~t~eelF~~~i~~i 77 (86)
.+++++++|+++||||...|||+++||.+++++|+++..|||||+|||||.+|++|+.|.+ +.+++|+|.+.+++|
T Consensus 299 n~~~q~~~iv~~sGPy~~~dd~s~~pl~~~id~vn~n~vdvlIl~GPFidi~h~li~~G~~~~t~~~~l~ElF~~r~tpi 378 (581)
T COG5214 299 NTNNQPTSIVAFSGPYGPRDDLSGSPLFDAIDRVNANDVDVLILIGPFIDINHILIQYGATQSTPDSMLKELFIPRITPI 378 (581)
T ss_pred ccCCCceEEEEEcCCCCCccccCcChHHHHHHHhccCCccEEEEeccccCcchhhhhhCCCCCCChhHHHHHHHHhhhHH
Confidence 5789999999999999999999999999999999999999999999999999999999987 568999999999999
Q ss_pred hcccc
Q psy149 78 VQPLE 82 (86)
Q Consensus 78 ~~~~~ 82 (86)
+++..
T Consensus 379 L~~~~ 383 (581)
T COG5214 379 LDRNA 383 (581)
T ss_pred HhccC
Confidence 99875
No 3
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=99.59 E-value=3.2e-16 Score=110.91 Aligned_cols=73 Identities=38% Similarity=0.777 Sum_probs=61.3
Q ss_pred EEEEeCCCCCCCCCCCchHHHHHHHHh-hCCCCEEEeeccccCCCCccccCCCc--CCCHHHHHHHHHHHhhcccc
Q psy149 10 MFVSAGPYTQSDTLSYKPLEDLIALTV-QQEPDVLILIGPLLDTSHPLLLNGSL--AETFEDFYVKLIDSIVQPLE 82 (86)
Q Consensus 10 i~vAaGPfT~~d~l~y~pL~~ll~~v~-~~~PdvlIL~GPFiD~~h~~i~~g~~--~~t~eelF~~~i~~i~~~~~ 82 (86)
|++|||||+.+++++|++|.++++.++ +.+|++|||+|||+|..|+.++.++. ..++++.|.+.+.+.++++.
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 76 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESIL 76 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCH
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcc
Confidence 799999999999999999999999999 99999999999999999999988876 77888888888888777764
No 4
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=89.19 E-value=1.3 Score=27.50 Aligned_cols=38 Identities=11% Similarity=0.269 Sum_probs=31.3
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+.++|+|+.|.... |++.+.+-|+++....|+.+|+-|
T Consensus 2 ~g~rVli~GgR~~~----D~~~i~~~Ld~~~~~~~~~~lvhG 39 (71)
T PF10686_consen 2 EGMRVLITGGRDWT----DHELIWAALDKVHARHPDMVLVHG 39 (71)
T ss_pred CCCEEEEEECCccc----cHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45788999987765 677788888889888899998877
No 5
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=88.61 E-value=1.4 Score=32.71 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=33.6
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++++|+..|=.--.. ....+.+..+++.+++.+||++++.|=++|..+
T Consensus 48 ~~~rI~~lSDlH~~~-~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~ 95 (271)
T PRK11340 48 APFKILFLADLHYSR-FVPLSLISDAIALGIEQKPDLILLGGDYVLFDM 95 (271)
T ss_pred CCcEEEEEcccCCCC-cCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCc
Confidence 356777765332211 112345889999999999999999999999543
No 6
>PRK04036 DNA polymerase II small subunit; Validated
Probab=88.49 E-value=1.1 Score=36.72 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=42.0
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHh---------hCCCCEEEeeccccCCCC
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTV---------QQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~---------~~~PdvlIL~GPFiD~~h 54 (86)
..+.++++.||-.-.++......|..|+++++ ..+|+.+|++|-++|..+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~ 299 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIG 299 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCccccccc
Confidence 34678999999987776666677899999999 778999999999999754
No 7
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=87.72 E-value=0.53 Score=35.58 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
-.+|-++++..+||.+|.+|||||-.+|-
T Consensus 184 k~elYer~~gvki~~vivitpFihdr~p~ 212 (231)
T COG5493 184 KKELYERAKGVKINKVIVITPFIHDRYPD 212 (231)
T ss_pred HHHHHHHhcCCccceEEEEcccccccChH
Confidence 45788999999999999999999999875
No 8
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=86.27 E-value=0.99 Score=33.70 Aligned_cols=37 Identities=16% Similarity=0.490 Sum_probs=33.1
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
..-=||+.+.++|++.+.++++++.+...|-++++|=
T Consensus 8 ~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs 44 (292)
T PRK03170 8 ALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGT 44 (292)
T ss_pred eeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 3456999999999999999999999999999998873
No 9
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=85.13 E-value=1.2 Score=32.93 Aligned_cols=37 Identities=22% Similarity=0.532 Sum_probs=33.0
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
..-=||+.+.++|++.+.++++++.+...|-++++|-
T Consensus 7 ~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~Gs 43 (284)
T cd00950 7 ALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGT 43 (284)
T ss_pred eeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3346999999999999999999999999999998873
No 10
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=84.36 E-value=1.4 Score=32.42 Aligned_cols=34 Identities=21% Similarity=0.503 Sum_probs=31.6
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+..+|++.+.++++++.+...|.+.++|
T Consensus 6 ~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~G 39 (281)
T cd00408 6 VTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLG 39 (281)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECC
Confidence 4599999999999999999999999999999888
No 11
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.13 E-value=1.5 Score=32.37 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=27.7
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
+.-|..+++.+++++||+||+.|=++|...|.
T Consensus 25 ~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~ 56 (253)
T TIGR00619 25 KAFLDDLLEFAKAEQIDALLVAGDVFDTANPP 56 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCCCCCC
Confidence 34578899999999999999999999988764
No 12
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=83.63 E-value=1.5 Score=33.24 Aligned_cols=37 Identities=8% Similarity=0.183 Sum_probs=33.0
Q ss_pred EEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 11 FVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 11 ~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
...-=||+.+.++|++.|..++++..+...|-++.+|
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~G 49 (303)
T PRK03620 13 SFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAG 49 (303)
T ss_pred EeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3344699999999999999999999999999999888
No 13
>PLN02417 dihydrodipicolinate synthase
Probab=83.44 E-value=1.6 Score=32.77 Aligned_cols=35 Identities=17% Similarity=0.439 Sum_probs=32.0
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
-=||+.+.++|++.+.++++++.+...|-++++|-
T Consensus 10 ~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gs 44 (280)
T PLN02417 10 KTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGT 44 (280)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECcc
Confidence 35999999999999999999999999999999883
No 14
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=83.30 E-value=1.6 Score=32.85 Aligned_cols=34 Identities=6% Similarity=0.139 Sum_probs=31.7
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++|++.+..+++++.+...|-++++|
T Consensus 9 vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~G 42 (289)
T cd00951 9 VTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAG 42 (289)
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4599999999999999999999999999999988
No 15
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=83.23 E-value=3.1 Score=28.90 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=32.6
Q ss_pred eeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCc
Q psy149 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 8 l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~ 55 (86)
++|++.|=.-... ....+-+..+++.+++.+||++++.|=++|...+
T Consensus 2 ~~i~~~sDlH~~~-~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~ 48 (223)
T cd07385 2 LRIAHLSDLHLGP-FVSRERLERLVEKINALKPDLVVLTGDLVDGSVD 48 (223)
T ss_pred CEEEEEeecCCCc-cCCHHHHHHHHHHHhccCCCEEEEcCcccCCcch
Confidence 4566655332211 1112468899999999999999999999987653
No 16
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=82.19 E-value=1.9 Score=32.53 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=31.5
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++|++.|..++++..+...|-+.++|
T Consensus 14 vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~G 47 (296)
T TIGR03249 14 VTPFDADGSFDEAAYRENIEWLLGYGLEALFAAG 47 (296)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECC
Confidence 4599999999999999999999999999999887
No 17
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=81.70 E-value=2 Score=32.19 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCchHHHHHHHHhhC-CCCEEEeecc
Q psy149 15 GPYTQSDTLSYKPLEDLIALTVQQ-EPDVLILIGP 48 (86)
Q Consensus 15 GPfT~~d~l~y~pL~~ll~~v~~~-~PdvlIL~GP 48 (86)
=||+.+.++|++.+..+++++.+. ..|-++++|-
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~Gs 44 (288)
T cd00954 10 TPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGS 44 (288)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcC
Confidence 499999999999999999999998 9999999883
No 18
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=81.51 E-value=2.1 Score=32.17 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=33.0
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHhh-CCCCEEEeec
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTVQ-QEPDVLILIG 47 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~~-~~PdvlIL~G 47 (86)
.--=||+.+..+|++.+.++++++.+ ...|-++..|
T Consensus 10 a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~G 46 (293)
T PRK04147 10 ALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGG 46 (293)
T ss_pred eeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34569999999999999999999999 9999999988
No 19
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=81.23 E-value=4.3 Score=29.86 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCCc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h~ 55 (86)
+..+++.+++.+||.+|+.|=++|....
T Consensus 22 ~~~~~~~i~~~~pd~i~~~GD~~d~~~~ 49 (256)
T cd07401 22 ETFCSNFIDVIKPALVLATGDLTDNKTG 49 (256)
T ss_pred HHHHHHHHHhhCCCEEEEcccccccccc
Confidence 3667888999999999999999997763
No 20
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=80.37 E-value=2.3 Score=32.16 Aligned_cols=34 Identities=15% Similarity=0.407 Sum_probs=31.8
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++|++-+..+++++.....|-++.+|
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~G 42 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQIEGGSHAISVGG 42 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4599999999999999999999999999999988
No 21
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=80.02 E-value=2.4 Score=31.97 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCchHHHHHHHHhhCC-CCEEEeec
Q psy149 15 GPYTQSDTLSYKPLEDLIALTVQQE-PDVLILIG 47 (86)
Q Consensus 15 GPfT~~d~l~y~pL~~ll~~v~~~~-PdvlIL~G 47 (86)
=||+.+.++|++.+..++++..+.. .|-++++|
T Consensus 10 TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~G 43 (290)
T TIGR00683 10 VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGG 43 (290)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECC
Confidence 4999999999999999999999988 99999987
No 22
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=79.86 E-value=1.8 Score=32.22 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=30.7
Q ss_pred EEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 11 FVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 11 ~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
....=||+.+.++|++-+.++++++.+...|-++..|-
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~Gs 44 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGS 44 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESST
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34456999999999999999999999999999999885
No 23
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=79.35 E-value=2.6 Score=32.18 Aligned_cols=45 Identities=20% Similarity=0.427 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHH
Q psy149 15 GPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDF 69 (86)
Q Consensus 15 GPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eel 69 (86)
=||+.+..+||+-+..++++..+...|-++.+| ..|+. ..|.||-
T Consensus 14 TPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~Ls~eEr 59 (299)
T COG0329 14 TPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTLTLEER 59 (299)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECC----------CCccchhcCHHHH
Confidence 499988889999999999999999999999988 34553 4566664
No 24
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=77.80 E-value=3.2 Score=30.99 Aligned_cols=34 Identities=21% Similarity=0.655 Sum_probs=31.2
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+..+|++.+..+++++.+...|-+..+|
T Consensus 7 ~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~G 40 (285)
T TIGR00674 7 ITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVG 40 (285)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3499999999999999999999999999988887
No 25
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=76.63 E-value=2.8 Score=26.40 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=24.7
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCC
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~ 53 (86)
|..-.+|-+++...+++-+++++||||..
T Consensus 31 f~rk~~lYek~~grk~~r~ivVtp~id~~ 59 (70)
T PF07788_consen 31 FKRKAELYEKVHGRKVDRLIVVTPYIDDR 59 (70)
T ss_pred HHHHHHHHHHHHCCCcceEEEEEeecCHH
Confidence 45556788898899999999999999976
No 26
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=76.54 E-value=2.4 Score=33.29 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=23.7
Q ss_pred chHHHHHHHHhhCCCCEEEeecc-----ccCCCCcc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP-----LLDTSHPL 56 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP-----FiD~~h~~ 56 (86)
+.+.++-+.+++.+|||+|++|| |-+..-|.
T Consensus 73 ~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~ 108 (328)
T cd07366 73 AALDRLADFIRAARIDVAVIVGDDQKELFDEALLPA 108 (328)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCc
Confidence 45677778888899999999999 55544444
No 27
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=76.47 E-value=2.8 Score=33.66 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=30.6
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCCCcccc
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLL 58 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~ 58 (86)
++-|.++++.+.+++||.|++.|=++|...|..+
T Consensus 28 ~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~ 61 (405)
T TIGR00583 28 WNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRK 61 (405)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHH
Confidence 5678999999999999999999999999998733
No 28
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=76.08 E-value=2.5 Score=34.52 Aligned_cols=44 Identities=23% Similarity=0.566 Sum_probs=33.1
Q ss_pred EeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEee----ccccCCCCcc
Q psy149 13 SAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILI----GPLLDTSHPL 56 (86)
Q Consensus 13 AaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~----GPFiD~~h~~ 56 (86)
=|-=|++..+|+-+-+.++++.|++.+||++|++ |-|++..-|.
T Consensus 162 RSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~ 209 (403)
T PF06838_consen 162 RSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT 209 (403)
T ss_dssp -S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc
Confidence 3556999999999999999999999999999996 9999988864
No 29
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=75.90 E-value=3.5 Score=30.88 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 15 GPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 15 GPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
=||+. .++|++.+.++++++.+...|-++.+|
T Consensus 10 TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~G 41 (279)
T cd00953 10 TPFTG-NKIDKEKFKKHCENLISKGIDYVFVAG 41 (279)
T ss_pred cCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcc
Confidence 59997 999999999999999999999999988
No 30
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=75.84 E-value=2.6 Score=32.66 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
+.++-+.+.+.+||++|++||=
T Consensus 31 ~~~l~~~l~~~~PD~iVIigph 52 (310)
T cd07365 31 FAAARAFVAAFDPELVVLFAPD 52 (310)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC
Confidence 3445556666889999999994
No 31
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=75.63 E-value=3.8 Score=32.66 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
|..+++.+++.+||+||+.|=++|...|.
T Consensus 28 l~~l~~~i~~~~~D~viIaGDifD~~~p~ 56 (407)
T PRK10966 28 LDWLLEQVQEHQVDAIIVAGDIFDTGSPP 56 (407)
T ss_pred HHHHHHHHHhcCCCEEEECCccccCCCCc
Confidence 56788889999999999999999987653
No 32
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=74.79 E-value=3.3 Score=32.58 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=18.7
Q ss_pred hHHHHHHHHhhCCCCEEEeecc
Q psy149 27 PLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.+.++-+.+++.+||++|++||
T Consensus 76 a~~~~~~~i~~~~PDvlViisp 97 (335)
T PRK13363 76 AIERMRDAIEAARIDVAVIVGN 97 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEcC
Confidence 4666777888899999999988
No 33
>PHA02546 47 endonuclease subunit; Provisional
Probab=74.53 E-value=4.6 Score=31.12 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.6
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
+-|..+++++++++||+||+.|=++|...
T Consensus 26 ~~l~~ii~~a~~~~vD~VliaGDlfD~~~ 54 (340)
T PHA02546 26 KFIKQAIEYSKAHGITTWIQLGDTFDVRK 54 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 45788899999999999999999999853
No 34
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=73.88 E-value=3.7 Score=31.73 Aligned_cols=35 Identities=23% Similarity=0.514 Sum_probs=31.4
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCCcccc
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLL 58 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~ 58 (86)
.|.-|.++++.+.++++|+||.-|=..|...|..+
T Consensus 25 ~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~ 59 (390)
T COG0420 25 QKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPR 59 (390)
T ss_pred HHHHHHHHHHHHHHccCCEEEEccccccCCCCCHH
Confidence 35678899999999999999999999999998865
No 35
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=72.98 E-value=5 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.699 Sum_probs=26.3
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++-|..+++.+++.+||.+|+.|=++|...
T Consensus 27 ~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~ 56 (223)
T cd00840 27 FEAFEEIVELAIEEKVDFVLIAGDLFDSNN 56 (223)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCcccCCCC
Confidence 445889999999999999999999998765
No 36
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=71.82 E-value=8.6 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=25.0
Q ss_pred ceeEE-EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEe
Q psy149 7 SLSMF-VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 7 ~l~i~-vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
.++|+ ..+|||+. +-..++++.|++.+||+|++
T Consensus 74 ~l~ivg~~~g~f~~------~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 74 GLRIVGYHHGYFDE------EEEEAIINRINASGPDIVFV 107 (172)
T ss_pred CeEEEEecCCCCCh------hhHHHHHHHHHHcCCCEEEE
Confidence 56676 45677722 36789999999999998876
No 37
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=71.60 E-value=7.9 Score=25.40 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.1
Q ss_pred CchHHHHHHHHhhCCCCEEEeec
Q psy149 25 YKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+.|..++++.+.+.+||++.+.+
T Consensus 36 ~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 36 RQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcc
Confidence 34888999999999999998854
No 38
>COG2350 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.24 E-value=5.1 Score=26.20 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=18.6
Q ss_pred EEEeeccccCCCCccccCCCc----CCCHHHHHH
Q psy149 42 VLILIGPLLDTSHPLLLNGSL----AETFEDFYV 71 (86)
Q Consensus 42 vlIL~GPFiD~~h~~i~~g~~----~~t~eelF~ 71 (86)
.++..|||.|.+--- .|.. ..+.+|-|.
T Consensus 36 ~ll~sGP~~~~dg~~--~~s~~i~ea~~l~da~~ 67 (92)
T COG2350 36 RLLTSGPFPDRDGGP--TGSLVIAEAESLEDAFA 67 (92)
T ss_pred eEEEeCCCCCCCCCC--ccceEEEeccchhhHHH
Confidence 999999999988633 1111 456666554
No 39
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=71.17 E-value=8.2 Score=27.53 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=24.5
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEe
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
.+.|+-.+|||..+ --.++++.|++.+||+|++
T Consensus 74 ~l~i~g~~g~f~~~------~~~~i~~~I~~s~~dil~V 106 (177)
T TIGR00696 74 KLKIVGAFGPLEPE------ERKAALAKIARSGAGIVFV 106 (177)
T ss_pred CCEEEEECCCCChH------HHHHHHHHHHHcCCCEEEE
Confidence 45666557998533 3367999999999998775
No 40
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=71.06 E-value=8.5 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=24.6
Q ss_pred ceeEEE-EeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEe
Q psy149 7 SLSMFV-SAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 7 ~l~i~v-AaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
.++|+- .+|||..+ ...++++.|++.+||+|++
T Consensus 72 ~l~i~g~~~g~~~~~------~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 72 GLKIVGYHHGYFGPE------EEEEIIERINASGADILFV 105 (171)
T ss_pred CcEEEEecCCCCChh------hHHHHHHHHHHcCCCEEEE
Confidence 456655 57777754 4456999999999998876
No 41
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=70.72 E-value=5.2 Score=32.85 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=27.7
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL 62 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~ 62 (86)
-+.++.+.+++.+||++| .| ++..+|+++.|--
T Consensus 379 D~~el~~~i~~~~pDLlI-gG--~~~~~Pl~~~G~p 411 (457)
T CHL00073 379 DNYNQIQRIRELQPDLAI-TG--MAHANPLEARGIN 411 (457)
T ss_pred CHHHHHHHHhhCCCCEEE-cc--ccccCchhhcCCc
Confidence 477888899999999988 66 3999999998853
No 42
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=69.88 E-value=5.5 Score=29.50 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=17.9
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+.|.++-+.+.+.+||++|++||
T Consensus 31 ~~l~~~~~~l~~~~Pd~ivvis~ 53 (271)
T cd07359 31 AAFARIRDRLEAARPDVVVVVGN 53 (271)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeC
Confidence 44556666666679999999999
No 43
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=69.17 E-value=4.6 Score=31.40 Aligned_cols=23 Identities=13% Similarity=0.419 Sum_probs=17.7
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+.+.++-+.+.+.+||++|++||
T Consensus 29 ~a~~~l~~~l~~~~PD~iVIigp 51 (313)
T PRK13370 29 AVIAAAREFVAAFDPELVVLFAP 51 (313)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcC
Confidence 34455666667788999999999
No 44
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=68.98 E-value=5.9 Score=25.03 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=13.2
Q ss_pred CchHHHHHHHHhhCCCCEEEee
Q psy149 25 YKPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+....++++.+++..|++.|++
T Consensus 65 ~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 65 LPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEE
Confidence 4556666666666777744433
No 45
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=68.84 E-value=5.9 Score=29.94 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=19.0
Q ss_pred chHHHHHHHHhhCCCCEEEeec
Q psy149 26 KPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+.+.++-+.+++.+||++|++|
T Consensus 33 ~a~~~~~~~v~~~~pD~ivvi~ 54 (277)
T cd07368 33 HAYAICAERLAALQVTSVVVIG 54 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEEc
Confidence 5677777888899999999998
No 46
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=67.32 E-value=8.1 Score=27.89 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.7
Q ss_pred chHHHHHHHHhhC-----CCCEEEeeccccCCC
Q psy149 26 KPLEDLIALTVQQ-----EPDVLILIGPLLDTS 53 (86)
Q Consensus 26 ~pL~~ll~~v~~~-----~PdvlIL~GPFiD~~ 53 (86)
..+..|+++++.. +||.||++|-++|..
T Consensus 17 ~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~ 49 (243)
T cd07386 17 DAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGI 49 (243)
T ss_pred HHHHHHHHHHcCCcccccCccEEEEeCCccccc
Confidence 3567788888775 459999999999985
No 47
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=67.07 E-value=6.5 Score=27.78 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=13.2
Q ss_pred HHHhhCCCCEEEeecc
Q psy149 33 ALTVQQEPDVLILIGP 48 (86)
Q Consensus 33 ~~v~~~~PdvlIL~GP 48 (86)
..+.++|||++|..||
T Consensus 86 ~il~r~rPdvii~nGp 101 (170)
T PF08660_consen 86 RILRRERPDVIISNGP 101 (170)
T ss_pred HHHHHhCCCEEEEcCC
Confidence 3446689999999999
No 48
>PRK13373 putative dioxygenase; Provisional
Probab=66.26 E-value=5.4 Score=31.92 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=18.9
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+.+.++=+.+++.+|||+|++|+
T Consensus 33 ~a~~~ir~~i~e~kPDVvVv~~n 55 (344)
T PRK13373 33 QAADRLGRSLDAARPDVIIAFLD 55 (344)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcc
Confidence 44666777788899999999987
No 49
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=66.18 E-value=6.1 Score=29.93 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=22.1
Q ss_pred CCchHHHHHHHHhhCCCC--EEEeecc
Q psy149 24 SYKPLEDLIALTVQQEPD--VLILIGP 48 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~Pd--vlIL~GP 48 (86)
-|+-.+++++.+++...| +||++||
T Consensus 151 Af~~~d~I~~~i~~~~~~~LiLiaLGP 177 (225)
T PF08759_consen 151 AFSKYDEILEAIKKYAKDKLILIALGP 177 (225)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 588999999999999888 6777899
No 50
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=66.17 E-value=5.9 Score=30.28 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.2
Q ss_pred CchHHHHHHHHhhCCCCEEEeec
Q psy149 25 YKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
++-+.++-+.+++.+||++|++|
T Consensus 34 ~~a~~~~~~~v~~~~PDvvVvis 56 (278)
T PRK13364 34 FDGFPPVREWLEKVKPDVAVVFY 56 (278)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEC
Confidence 56677788888899999999999
No 51
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=65.90 E-value=6 Score=29.42 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=16.7
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+-|+++-+.+.+.+||++|++||
T Consensus 29 ~~l~~~~~~l~~~~Pd~iViis~ 51 (269)
T PRK13358 29 EGMREIGRRLRELRPDVLVVIGS 51 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeC
Confidence 34455555555579999999999
No 52
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=65.79 E-value=8.2 Score=29.42 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCCCC-------CCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 15 GPYTQS-------DTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 15 GPfT~~-------d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
=||+.+ .++||+.|..+++++.....|-++.+|
T Consensus 11 TPf~~~~~~~~~~g~iD~~~l~~lv~~li~~Gv~Gi~v~G 50 (309)
T cd00952 11 TPSKPDASDWRATDTVDLDETARLVERLIAAGVDGILTMG 50 (309)
T ss_pred cCccCCccccccCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 488875 489999999999999999999999887
No 53
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=65.70 E-value=7.8 Score=30.07 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCCEEEeeccccCC
Q psy149 30 DLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+..+.+++.|||+||++| +.+.
T Consensus 80 ~~~~~l~~~kPd~vi~~g-~~~~ 101 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGID-APDF 101 (385)
T ss_pred HHHHHHHhcCCCEEEEeC-CCCc
Confidence 334556789999999999 7553
No 54
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=64.77 E-value=9.7 Score=24.68 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
|..+++.+++.+||.+|++|=++|..-
T Consensus 24 l~~~~~~~~~~~~d~vi~~GDl~~~~~ 50 (144)
T cd07400 24 LDRLLAEIKALDPDLVVITGDLTQRGL 50 (144)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCCC
Confidence 556888899999999999999988643
No 55
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=64.25 E-value=8.7 Score=28.29 Aligned_cols=43 Identities=19% Similarity=0.418 Sum_probs=33.2
Q ss_pred EEeCCCCCCC-CCCCchHHHHHHHHhhC--CCCEEEeeccccCCCC
Q psy149 12 VSAGPYTQSD-TLSYKPLEDLIALTVQQ--EPDVLILIGPLLDTSH 54 (86)
Q Consensus 12 vAaGPfT~~d-~l~y~pL~~ll~~v~~~--~PdvlIL~GPFiD~~h 54 (86)
.++|||..-. +..+.-+...++.+++. +||.+|..|=.++...
T Consensus 38 ~~~~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~ 83 (296)
T cd00842 38 PPAGPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDV 83 (296)
T ss_pred CCCCCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCc
Confidence 4577777664 45567788999999997 9999999996665543
No 56
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=63.60 E-value=17 Score=28.41 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=36.7
Q ss_pred eeEEEEeCCCCCCCCCCCchHHHHHHHHh-h----CCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHH
Q psy149 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTV-Q----QEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLI 74 (86)
Q Consensus 8 l~i~vAaGPfT~~d~l~y~pL~~ll~~v~-~----~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i 74 (86)
.+++|- |=--.++--..+.|..+++... . +.|-+.||||.|... |....+.-...+.+-|.+.-
T Consensus 28 ~~~Vil-SDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~--p~~~~~~~~~~yk~~Fd~La 96 (291)
T PTZ00235 28 HNWIIM-HDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISL--KFDYNRNFHKVYIKGFEKLS 96 (291)
T ss_pred eEEEEE-EeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCC--cccCCCCchHHHHHHHHHHH
Confidence 444444 3222333344577888887763 2 459999999999855 43322223334556665543
No 57
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=63.08 E-value=8.7 Score=27.88 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
.+.++-+.+++.+||++|++||==.
T Consensus 25 ~~~~~~~~~~~~~pd~iviis~hh~ 49 (260)
T cd07320 25 QPIEISKRIKEKRPDTIIVVSPHHL 49 (260)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 4777777787789999999997444
No 58
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=62.30 E-value=8 Score=27.29 Aligned_cols=27 Identities=37% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 21 DTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 21 d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
.....+-+.++++.|+..+||.||+.|
T Consensus 15 ~~~~~~~~~~~~~~i~~~~~D~~v~tG 41 (301)
T COG1409 15 GVDSEELLEALLAAIEQLKPDLLVVTG 41 (301)
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEcc
Confidence 455667899999999999999999999
No 59
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=61.73 E-value=8.3 Score=24.70 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=10.4
Q ss_pred CCchHHHHHHHHhhCCC-CEE
Q psy149 24 SYKPLEDLIALTVQQEP-DVL 43 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~P-dvl 43 (86)
.+..+.++++.+++..| ++.
T Consensus 63 ~~~~~~~~i~~l~~~~~~~~~ 83 (119)
T cd02067 63 HMTLMKEVIEELKEAGLDDIP 83 (119)
T ss_pred cHHHHHHHHHHHHHcCCCCCe
Confidence 34455555555555555 543
No 60
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=61.61 E-value=10 Score=27.70 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCCEEEeecc
Q psy149 28 LEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GP 48 (86)
|.++-+.+.+.+||++|++||
T Consensus 27 ~~~~~~~l~~~~pd~ivvvg~ 47 (256)
T cd07951 27 CEAAARRLAAARPDTIVVVSP 47 (256)
T ss_pred HHHHHHHHHHcCCCEEEEECC
Confidence 334444444479999999999
No 61
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=61.46 E-value=8 Score=29.38 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.0
Q ss_pred CchHHHHHHHHhhCCCCEEEeec
Q psy149 25 YKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
++-+.++-+++++.+||++|+++
T Consensus 34 ~~a~~~~~~~i~~~~PD~iVvi~ 56 (277)
T cd07950 34 FDGYEPVKQWLAEQKPDVLFMVY 56 (277)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEc
Confidence 45677888888999999999999
No 62
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=61.46 E-value=6.4 Score=30.38 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=27.4
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+=+|+..|+|=. +++-|..|++.+.+.+||+|+++|=.+-.
T Consensus 5 ~~kilA~s~~~g-----~~e~l~~l~~~~~e~~~D~~v~~G~~~~~ 45 (255)
T PF14582_consen 5 VRKILAISNFRG-----DFELLERLVEVIPEKGPDAVVFVGDLLKA 45 (255)
T ss_dssp --EEEEEE--TT------HHHHHHHHHHHHHHT-SEEEEES-SS-T
T ss_pred chhheeecCcch-----HHHHHHHHHhhccccCCCEEEEecccccc
Confidence 346666666643 46889999999999999999999977644
No 63
>PRK09453 phosphodiesterase; Provisional
Probab=60.95 E-value=11 Score=25.93 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCCchHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 23 LSYKPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
.++..+..+++.+++.+||.+|++|=++|.
T Consensus 11 g~~~~~~~~l~~~~~~~~d~ii~lGDi~~~ 40 (182)
T PRK09453 11 GSLPATEKALELFAQSGADWLVHLGDVLYH 40 (182)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccccccc
Confidence 346788999999999999999999999884
No 64
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=60.38 E-value=7 Score=28.75 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+.++-+.+.+.+||++|+++|==-.
T Consensus 30 ~~~~~~~l~~~~pd~ivvis~h~~~ 54 (272)
T PF02900_consen 30 LQELGRRLREAKPDVIVVISPHWFT 54 (272)
T ss_dssp HHHHHHHCHSTS-SEEEEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcch
Confidence 4444455556799999999983333
No 65
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=60.32 E-value=32 Score=22.08 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=39.9
Q ss_pred EeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhh
Q psy149 13 SAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIV 78 (86)
Q Consensus 13 AaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~ 78 (86)
=|||+|--.+.++..+.+.-+++++.- +.++ ||......-..+.++..+..+.-+.
T Consensus 3 IaGPmtG~~~~N~~~f~~~a~~L~~~G-~~vv---------nPa~~~~~~~~~~~~ym~~~l~~L~ 58 (92)
T PF14359_consen 3 IAGPMTGLPDYNRPAFNAAAKRLRAKG-YEVV---------NPAELGIPEGLSWEEYMRICLAMLS 58 (92)
T ss_pred EeCCcCCCcchHHHHHHHHHHHHHHCC-CEEe---------CchhhCCCCCCCHHHHHHHHHHHHH
Confidence 389999989999999999888888855 4333 4443322225678888887777665
No 66
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=60.15 E-value=14 Score=29.07 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=28.4
Q ss_pred EEEeCCCCCCCCCC--CchHHHHH------HHHhhCCCCEEEeeccccCC
Q psy149 11 FVSAGPYTQSDTLS--YKPLEDLI------ALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 11 ~vAaGPfT~~d~l~--y~pL~~ll------~~v~~~~PdvlIL~GPFiD~ 52 (86)
.|.+|++.....+. ..|+.-+. +.+++.|||++|-+|+|+-.
T Consensus 55 ~I~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~ 104 (357)
T COG0707 55 LIPSGGLRRKGSLKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSG 104 (357)
T ss_pred EEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCcccc
Confidence 46777777665554 33433333 34677999999999999853
No 67
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=59.93 E-value=8.9 Score=29.19 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.2
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+-+.++-+.|++.+||++|++|+
T Consensus 35 ~a~~~i~~~v~~~~PDviVvi~s 57 (279)
T PRK13365 35 DGYEPVAAWLAEQKADVLVFFYN 57 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcC
Confidence 45666777788899999999954
No 68
>PHA02729 hypothetical protein; Provisional
Probab=59.82 E-value=11 Score=24.95 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=30.2
Q ss_pred CCCCCCCCCchHHHHHHHHh---hCCCCEEEeeccccCCCCcc
Q psy149 17 YTQSDTLSYKPLEDLIALTV---QQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 17 fT~~d~l~y~pL~~ll~~v~---~~~PdvlIL~GPFiD~~h~~ 56 (86)
|++..+-+|+=|.+|+.+++ +.+.|--+|.| |++.+.
T Consensus 38 W~P~tedDYkFL~~LV~~v~~n~~tk~dYYVLsg---d~~~~t 77 (94)
T PHA02729 38 WTPVTEDDYKFLSRLVLMAKLNRDTVFDYYVLTG---DIEQPT 77 (94)
T ss_pred eecCcchHHHHHHHHHHHHhhccccceeeEEEec---CCCCce
Confidence 56677789999999999998 57899999999 665543
No 69
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=59.68 E-value=7.8 Score=27.83 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=26.2
Q ss_pred CCCchHHHHHHHHhhC-CCCEEEeeccccCCC
Q psy149 23 LSYKPLEDLIALTVQQ-EPDVLILIGPLLDTS 53 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~-~PdvlIL~GPFiD~~ 53 (86)
=.|+.|.++++++... +.|.||++|=+||.-
T Consensus 27 G~~~~L~~lL~~i~~~~~~D~li~lGDlvDrG 58 (218)
T PRK11439 27 GCFEQLMRKLRHCRFDPWRDLLISVGDLIDRG 58 (218)
T ss_pred CCHHHHHHHHHhcCCCcccCEEEEcCcccCCC
Confidence 3678999999999765 789999999999953
No 70
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=59.15 E-value=8.9 Score=29.76 Aligned_cols=26 Identities=12% Similarity=0.581 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHhhCCCC--EEEeeccc
Q psy149 24 SYKPLEDLIALTVQQEPD--VLILIGPL 49 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~Pd--vlIL~GPF 49 (86)
.|+-.+++++.+++...| +||++||=
T Consensus 169 Ay~~yd~I~e~i~~~~k~~LiLlaLGPT 196 (265)
T TIGR03728 169 AFSKYDEILEAIRENAKNKLILLMLGPT 196 (265)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 488899999999999998 55567993
No 71
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=59.14 E-value=10 Score=28.81 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=20.9
Q ss_pred CchHHHHHHHHhhCCCCEEEeecc
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
++-+.++-+.+++.+||++|++++
T Consensus 34 ~~a~~~~~~~v~~~~PD~iVvis~ 57 (276)
T cd07949 34 FDGFPPVHDWLEKAKPDVAVVFYN 57 (276)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECC
Confidence 456778888889999999999997
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=59.01 E-value=8.8 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.6
Q ss_pred HHHHHHHhhCCCCEEEeecccc
Q psy149 29 EDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPFi 50 (86)
..+.+.+++.+||++|..+|+.
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~ 115 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII 115 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH
Confidence 4677778889999999999975
No 73
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=58.31 E-value=38 Score=24.40 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=33.0
Q ss_pred CceeEEEEeCCCCCCC-CC------CCc----hHHHHHHHHhhC--CCCEEEeeccccCCC
Q psy149 6 RSLSMFVSAGPYTQSD-TL------SYK----PLEDLIALTVQQ--EPDVLILIGPLLDTS 53 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d-~l------~y~----pL~~ll~~v~~~--~PdvlIL~GPFiD~~ 53 (86)
.+.+++++|-|--... .. .|. -|+.+++.+++. +||.+|+.|=.+|..
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~ 63 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAM 63 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCC
Confidence 4677777776654421 11 222 267888888887 999999999888754
No 74
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=57.70 E-value=32 Score=23.27 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=33.8
Q ss_pred CCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhc
Q psy149 17 YTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQ 79 (86)
Q Consensus 17 fT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~ 79 (86)
|.--+.--+.+-.++++.+.++++|++.+++ +..+..+.++.++..+-+
T Consensus 31 feVi~lg~~~s~e~~v~aa~e~~adii~iSs--------------l~~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAVEADVHVVGVSS--------------LAGGHLTLVPALRKELDK 79 (132)
T ss_pred cEEEECCCCCCHHHHHHHHHHcCCCEEEEcC--------------chhhhHHHHHHHHHHHHh
Confidence 4434444566788999999999999999953 445555566666665544
No 75
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=57.56 E-value=28 Score=26.93 Aligned_cols=51 Identities=12% Similarity=0.302 Sum_probs=32.1
Q ss_pred HHHHHHHHhhCCCCEEEeec-cc-----------cCCCCccccCCCcC-CCHHHHHHHHHHHhh
Q psy149 28 LEDLIALTVQQEPDVLILIG-PL-----------LDTSHPLLLNGSLA-ETFEDFYVKLIDSIV 78 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~G-PF-----------iD~~h~~i~~g~~~-~t~eelF~~~i~~i~ 78 (86)
+..+-+.+.+.+||+++..| .+ ...---.|..|+.. -++||.-++.++.+.
T Consensus 82 ~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~~~~eE~~r~~i~~la 145 (365)
T TIGR03568 82 IIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEGAIDESIRHAITKLS 145 (365)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCCCCchHHHHHHHHHHH
Confidence 35566667889999999999 32 11111235556441 157888888777653
No 76
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=57.15 E-value=11 Score=28.70 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=24.8
Q ss_pred CchHHHHHHHHhhCCCCEEEeecc-----ccCCCCcccc
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGP-----LLDTSHPLLL 58 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GP-----FiD~~h~~i~ 58 (86)
++-+.++-+++++.+||++|++|+ |.+..-|.+.
T Consensus 34 ~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~ 72 (277)
T cd07364 34 FKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFA 72 (277)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceE
Confidence 345777788888899999999965 6565555543
No 77
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=57.14 E-value=10 Score=26.44 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=26.5
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
.|..|..+++.+...++|.+|++|=++|...
T Consensus 9 ~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~ 39 (225)
T cd00144 9 CLDDLLRLLEKIGFPPNDKLIFLGDYVDRGP 39 (225)
T ss_pred CHHHHHHHHHHhCCCCCCEEEEECCEeCCCC
Confidence 4678888899888888999999999999653
No 78
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=57.05 E-value=18 Score=26.52 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCCCchHHHHHHHHhhCCCCEEEe-eccccCCC
Q psy149 22 TLSYKPLEDLIALTVQQEPDVLIL-IGPLLDTS 53 (86)
Q Consensus 22 ~l~y~pL~~ll~~v~~~~PdvlIL-~GPFiD~~ 53 (86)
.-.+..+..+++.+++..||+|++ .|=+++.+
T Consensus 26 ~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs 58 (277)
T cd07410 26 SGGLARVATLIKKARAENPNTLLIDNGDTIQGS 58 (277)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEeCCccCCcc
Confidence 367889999999999999999988 89888754
No 79
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=56.91 E-value=14 Score=25.26 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=22.4
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
....+.+.+++.+||.||+.|=++|...
T Consensus 26 ~~~~~~~~i~~~~pd~vv~~GDl~~~~~ 53 (156)
T cd08165 26 MERSFQTSLWLLQPDVVFVLGDLFDEGK 53 (156)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCc
Confidence 4446667788899999999999988644
No 80
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=56.90 E-value=20 Score=26.84 Aligned_cols=33 Identities=9% Similarity=0.219 Sum_probs=23.7
Q ss_pred ceeEE-EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEe
Q psy149 7 SLSMF-VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 7 ~l~i~-vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
+++|+ ..+|||..+ --.++++.|++.+||+|++
T Consensus 130 ~l~i~g~~~Gyf~~~------e~~~i~~~I~~s~~dil~V 163 (243)
T PRK03692 130 NVNIVGSQDGYFTPE------QRQALFERIHASGAKIVTV 163 (243)
T ss_pred CCEEEEEeCCCCCHH------HHHHHHHHHHhcCCCEEEE
Confidence 35554 357888533 3467999999999998876
No 81
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=56.85 E-value=16 Score=25.67 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=25.0
Q ss_pred CchHHHHHHHHhhC--CCCEEEeeccccCCCC
Q psy149 25 YKPLEDLIALTVQQ--EPDVLILIGPLLDTSH 54 (86)
Q Consensus 25 y~pL~~ll~~v~~~--~PdvlIL~GPFiD~~h 54 (86)
.+-|+.+++.+++. +||.+|+.|=+++...
T Consensus 24 ~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~ 55 (240)
T cd07402 24 AASLEAVLAHINALHPRPDLVLVTGDLTDDGS 55 (240)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECccCCCCCC
Confidence 45688899999987 9999999999887643
No 82
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=55.95 E-value=11 Score=30.90 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=14.7
Q ss_pred HHHHHHhhCCCCEEEeecc
Q psy149 30 DLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GP 48 (86)
.+=+.+++.+|||+|++||
T Consensus 39 ~~r~~l~~~~PDvvVv~~n 57 (420)
T PRK13367 39 PLRRWLEEKKPDVLLYIFN 57 (420)
T ss_pred HHHHHHHHhCCCEEEEEcc
Confidence 3444556689999999998
No 83
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=55.92 E-value=11 Score=28.87 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=25.1
Q ss_pred CchHHHHHHHHhhCCCCEEEeecc-----ccCCCCcccc
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGP-----LLDTSHPLLL 58 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GP-----FiD~~h~~i~ 58 (86)
++-+.++-+++++.+||++|++|+ |.+...|.+.
T Consensus 34 ~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~ 72 (284)
T PRK13366 34 FKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFA 72 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceE
Confidence 455677778888899999999965 5555555544
No 84
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=55.82 E-value=19 Score=24.61 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=23.4
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
+-+..+.+.+.+.+||.||++|=++|...
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~~~~~ 56 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLKHSFG 56 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccccc
Confidence 45667777788899999999999987644
No 85
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=55.74 E-value=16 Score=26.24 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
|..+++.+++.+||++|+.|=++|.
T Consensus 21 l~~~~~~~~~~~~d~vv~~GDl~~~ 45 (239)
T TIGR03729 21 LETLAQYLKKQKIDHLHIAGDISND 45 (239)
T ss_pred HHHHHHHHHhcCCCEEEECCccccc
Confidence 6788899999999999999998874
No 86
>PRK10878 hypothetical protein; Provisional
Probab=55.71 E-value=0.9 Score=28.58 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=11.0
Q ss_pred EeeccccCCCCccccC
Q psy149 44 ILIGPLLDTSHPLLLN 59 (86)
Q Consensus 44 IL~GPFiD~~h~~i~~ 59 (86)
+++|||+|........
T Consensus 6 lll~~F~~~~~~~l~~ 21 (72)
T PRK10878 6 ISIMPFFEHEYDSLSD 21 (72)
T ss_pred HHHHHHHHHHHhhCCH
Confidence 4678888888755443
No 87
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=55.48 E-value=18 Score=23.14 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.8
Q ss_pred chHHHHHHHHhhCCCCEEEee
Q psy149 26 KPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~ 46 (86)
.|..++++.+.+.+||++.+.
T Consensus 37 ~~~~~l~~~~~~~~pdvV~iS 57 (119)
T cd02067 37 VPPEEIVEAAKEEDADAIGLS 57 (119)
T ss_pred CCHHHHHHHHHHcCCCEEEEe
Confidence 478999999999999999884
No 88
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=55.29 E-value=11 Score=27.66 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=25.2
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
.+-|...++.+++.+||.+|..|=.++...
T Consensus 26 ~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~ 55 (267)
T cd07396 26 LEKLEEAVEEWNRESLDFVVQLGDIIDGDN 55 (267)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCeecCCC
Confidence 467888899999999999999998876554
No 89
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=54.95 E-value=17 Score=29.52 Aligned_cols=50 Identities=24% Similarity=0.488 Sum_probs=35.1
Q ss_pred CcCCCceeEEEEeC------------CCCCCCCCCCchHHHHHH-HHhhCCCCEEEeeccccCCCCcccc
Q psy149 2 TLTRRSLSMFVSAG------------PYTQSDTLSYKPLEDLIA-LTVQQEPDVLILIGPLLDTSHPLLL 58 (86)
Q Consensus 2 ~l~~~~l~i~vAaG------------PfT~~d~l~y~pL~~ll~-~v~~~~PdvlIL~GPFiD~~h~~i~ 58 (86)
+|||-+++|+--.| ||||. .+.+|++ ..-+.-||. +|||-++-.+||-+.
T Consensus 95 KmnGYNVRV~k~~g~vyAiTRgG~ICPfTT~------r~~~l~~~eff~d~p~l-vlcgEmvG~enPYv~ 157 (382)
T COG1423 95 KMNGYNVRVVKLGGEVYAITRGGLICPFTTE------RLRDLIDLEFFDDYPDL-VLCGEMVGPENPYVP 157 (382)
T ss_pred eccCceEEEEEECCEEEEEecCceecCchhH------HHHhhcchhhHhhCCCc-EEEEEeccCCCCCCC
Confidence 56777777754433 99998 5555553 333456885 679999999999876
No 90
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=54.64 E-value=22 Score=27.21 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=25.5
Q ss_pred eeEEEEe-CCCCCCCCCCCchHHHHHHHHhhCCCCEEEe
Q psy149 8 LSMFVSA-GPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 8 l~i~vAa-GPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
++|+... |.|+.. +. +.+++.|+..+||+|+.
T Consensus 135 l~ivg~h~GYf~~~-----e~-~~i~~~I~~s~pdil~V 167 (253)
T COG1922 135 LKIVGSHDGYFDPE-----EE-EAIVERIAASGPDILLV 167 (253)
T ss_pred ceEEEecCCCCChh-----hH-HHHHHHHHhcCCCEEEE
Confidence 6777776 888877 33 59999999999998753
No 91
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=54.52 E-value=64 Score=21.71 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCCccccCCC---cCCCHHHHHHHHHHHhhcccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGS---LAETFEDFYVKLIDSIVQPLE 82 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~---~~~t~eelF~~~i~~i~~~~~ 82 (86)
+..+-+.+.+.+||++|++.===|..+..-.++. ....+.+-|++.+..+++.++
T Consensus 48 ~~~~~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~ 105 (200)
T cd01829 48 PEKLKELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVAR 105 (200)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHH
Confidence 3455566778999988888433333221110000 012345566666666666554
No 92
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=54.14 E-value=12 Score=30.91 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.6
Q ss_pred HHHhhCCCCEEEeecc
Q psy149 33 ALTVQQEPDVLILIGP 48 (86)
Q Consensus 33 ~~v~~~~PdvlIL~GP 48 (86)
+.+.+.+|||+|++||
T Consensus 189 ~~l~~~~PDVvVi~~n 204 (444)
T PRK13372 189 EWAKEHLPDVIILVYN 204 (444)
T ss_pred HHHHHhCCCEEEEEcc
Confidence 4566689999999998
No 93
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=53.94 E-value=13 Score=27.94 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=17.6
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+-+.++-+.+.+.+||++|+++|
T Consensus 29 ~al~~~~~~l~~~~Pd~ivvis~ 51 (268)
T cd07367 29 QGMAEIGRRVRESRPDVLVVISS 51 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeC
Confidence 34555556666679999999999
No 94
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=53.86 E-value=62 Score=21.37 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=39.4
Q ss_pred cCCCceeEEEEeCCCCCC--CCCCCchHHHHHHHHhh-CCCCEEEeeccccCCCCccccCCCc------CCCHHHHHHHH
Q psy149 3 LTRRSLSMFVSAGPYTQS--DTLSYKPLEDLIALTVQ-QEPDVLILIGPLLDTSHPLLLNGSL------AETFEDFYVKL 73 (86)
Q Consensus 3 l~~~~l~i~vAaGPfT~~--d~l~y~pL~~ll~~v~~-~~PdvlIL~GPFiD~~h~~i~~g~~------~~t~eelF~~~ 73 (86)
|..+.+.+++..|+=..+ ..++..-..+|-++..- .....+||+| |+|.. +.+.+++|+.+
T Consensus 39 l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG----------KDG~vK~r~~~p~~~~~lf~~I 108 (118)
T PF13778_consen 39 LDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG----------KDGGVKLRWPEPIDPEELFDTI 108 (118)
T ss_pred cccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe----------CCCcEEEecCCCCCHHHHHHHH
Confidence 566778777777665544 45555555566655552 3345799999 55554 67889998743
No 95
>PHA02239 putative protein phosphatase
Probab=53.06 E-value=16 Score=26.95 Aligned_cols=29 Identities=14% Similarity=0.429 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHhhC--CCCEEEeeccccCC
Q psy149 24 SYKPLEDLIALTVQQ--EPDVLILIGPLLDT 52 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~--~PdvlIL~GPFiD~ 52 (86)
.|+.|..+++++... +.|.||++|=+||.
T Consensus 12 ~~~~l~~ll~~i~~~~~~~d~li~lGD~iDr 42 (235)
T PHA02239 12 EYQKLLTIMDKINNERKPEETIVFLGDYVDR 42 (235)
T ss_pred CHHHHHHHHHHHhhcCCCCCEEEEecCcCCC
Confidence 467899999999764 35999999999994
No 96
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=52.50 E-value=18 Score=24.02 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++..+.. .++++.+||+||+.|=+.+...
T Consensus 10 ~~~~~~~--~~~~~~~~D~vv~~GDl~~~~~ 38 (188)
T cd07392 10 DVEKLEA--IILKAEEADAVIVAGDITNFGG 38 (188)
T ss_pred CHHHHHH--HHhhccCCCEEEECCCccCcCC
Confidence 3455554 5667788999999998876543
No 97
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=51.63 E-value=14 Score=28.05 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=25.2
Q ss_pred CCchHHHHHHHHh-hCCCCEEEeeccccCCC
Q psy149 24 SYKPLEDLIALTV-QQEPDVLILIGPLLDTS 53 (86)
Q Consensus 24 ~y~pL~~ll~~v~-~~~PdvlIL~GPFiD~~ 53 (86)
+|+.|..+++++. +.++|.+|.+|=+||.-
T Consensus 12 ~~~~l~~ll~~~~~~~~~D~li~lGDlVdrG 42 (275)
T PRK00166 12 CYDELQRLLEKIDFDPAKDTLWLVGDLVNRG 42 (275)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEeCCccCCC
Confidence 5789999999986 35789999999999943
No 98
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=51.48 E-value=15 Score=28.31 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=18.7
Q ss_pred HHHHHHHhhCCCCEEEeecccc
Q psy149 29 EDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPFi 50 (86)
..+.+.+++.+||++|..+|+.
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~ 115 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTP 115 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHH
Confidence 5677888889999999988874
No 99
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=51.33 E-value=32 Score=20.57 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=18.5
Q ss_pred HHHhhCCCCEEEeeccccCCCCc
Q psy149 33 ALTVQQEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 33 ~~v~~~~PdvlIL~GPFiD~~h~ 55 (86)
....+.+|+.||++|=++|...+
T Consensus 20 ~~~~~~~~~~vi~~GD~~~~~~~ 42 (131)
T cd00838 20 ALAAAEKPDFVLVLGDLVGDGPD 42 (131)
T ss_pred HHhcccCCCEEEECCcccCCCCC
Confidence 55666899999999999987664
No 100
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=51.20 E-value=22 Score=26.62 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=19.4
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccC
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+-|.++-+++.+.+||++|.+.|=--
T Consensus 29 ~a~~~lg~~l~~~~Pd~IvviS~Hw~ 54 (271)
T cd07373 29 AATRQAGKALAASRPDVVLVYSTQWF 54 (271)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCc
Confidence 45566666776679999999988533
No 101
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=51.05 E-value=33 Score=24.86 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=36.4
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCE-EEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhccc
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDV-LILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQPL 81 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~Pdv-lIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~~~ 81 (86)
-+++.|||= .+...-.+-+..|++.+++..|++ +|++-|+.-... .+.. ....++++. ++.+....+++
T Consensus 62 ~~~ld~~~N-~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~-~~~~-~~~~~~~~~-~~~~r~~v~~l 131 (178)
T PF14606_consen 62 LIVLDCGPN-MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG-YFDN-SRGETVEEF-REALREAVEQL 131 (178)
T ss_dssp EEEEEESHH-CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT-TS---TTS--HHHH-HHHHHHHHHHH
T ss_pred EEEEEeecC-CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc-ccCc-hHHHHHHHH-HHHHHHHHHHH
Confidence 357788887 333444677899999999999995 455565664444 3332 233444332 44444444444
No 102
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.90 E-value=47 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.660 Sum_probs=21.9
Q ss_pred CCCchHHHHHHHHhhCCCCEEEeeccccCCCCc
Q psy149 23 LSYKPLEDLIALTVQQEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~ 55 (86)
+++.|..+||+.+.+ ++++.=++| |+.+|
T Consensus 108 fs~R~~reLl~~a~~-R~Ni~PIL~---DA~~P 136 (231)
T COG1889 108 FSPRPMRELLDVAEK-RPNIIPILE---DARKP 136 (231)
T ss_pred ecchhHHHHHHHHHh-CCCceeeec---ccCCc
Confidence 567899999998876 888776665 55554
No 103
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=50.65 E-value=17 Score=28.51 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.9
Q ss_pred HHHHHhhCCCCEEEeec
Q psy149 31 LIALTVQQEPDVLILIG 47 (86)
Q Consensus 31 ll~~v~~~~PdvlIL~G 47 (86)
+.+.+.+.+||+|+|.|
T Consensus 146 i~~Ll~~~~PDIlViTG 162 (287)
T PF05582_consen 146 IYRLLEEYRPDILVITG 162 (287)
T ss_pred HHHHHHHcCCCEEEEeC
Confidence 45566678999999998
No 104
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=50.57 E-value=59 Score=22.48 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=22.7
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCCCCc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~ 55 (86)
..+..+.+.+++.+||.+|+.|=+++...+
T Consensus 28 ~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~ 57 (199)
T cd07383 28 KTVAFIERVLDAEKPDLVVLTGDLITGENT 57 (199)
T ss_pred HHHHHHHHHHhhcCCCEEEECCccccCCCC
Confidence 345555566777999999999998886553
No 105
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=50.24 E-value=25 Score=23.94 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=7.1
Q ss_pred eeEEEEeCC
Q psy149 8 LSMFVSAGP 16 (86)
Q Consensus 8 l~i~vAaGP 16 (86)
--+++||||
T Consensus 26 ~~~IvgaGP 34 (170)
T PF01973_consen 26 PAIIVGAGP 34 (170)
T ss_pred eEEEEecCC
Confidence 347899999
No 106
>KOG0338|consensus
Probab=50.19 E-value=16 Score=31.48 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=37.8
Q ss_pred HHHhhCCCCEEEee-ccccCCCC--ccccCCCc--------CCCHHHHHHHHHHHhhccccC
Q psy149 33 ALTVQQEPDVLILI-GPLLDTSH--PLLLNGSL--------AETFEDFYVKLIDSIVQPLEK 83 (86)
Q Consensus 33 ~~v~~~~PdvlIL~-GPFiD~~h--~~i~~g~~--------~~t~eelF~~~i~~i~~~~~~ 83 (86)
+.+...+||+||-. |=|||--| |...-.++ +.-++|-|+..+..|++.|.+
T Consensus 296 E~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk 357 (691)
T KOG0338|consen 296 EAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPK 357 (691)
T ss_pred HHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccc
Confidence 45667899999875 88999765 32221112 678999999999999998864
No 107
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=49.78 E-value=6.8 Score=15.22 Aligned_cols=6 Identities=67% Similarity=1.293 Sum_probs=4.1
Q ss_pred eCCCCC
Q psy149 14 AGPYTQ 19 (86)
Q Consensus 14 aGPfT~ 19 (86)
+|||..
T Consensus 1 agpy~f 6 (8)
T PF08261_consen 1 AGPYSF 6 (8)
T ss_pred CCcccc
Confidence 588863
No 108
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=49.67 E-value=22 Score=22.95 Aligned_cols=21 Identities=10% Similarity=0.032 Sum_probs=18.8
Q ss_pred CchHHHHHHHHhhCCCCEEEe
Q psy149 25 YKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL 45 (86)
-.|-.++++++++.++|++|+
T Consensus 89 G~p~~~I~~~a~~~~~DLIV~ 109 (144)
T PRK15118 89 GDLGQVLVDAIKKYDMDLVVC 109 (144)
T ss_pred cCHHHHHHHHHHHhCCCEEEE
Confidence 368899999999999999887
No 109
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=49.35 E-value=18 Score=27.24 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=19.3
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+-.+.|.+.+.+.+||+++.+|=
T Consensus 47 ~s~~~l~~~i~~~qPd~vl~iG~ 69 (207)
T COG2039 47 KSIDALVQAIAEVQPDLVLAIGQ 69 (207)
T ss_pred HHHHHHHHHHHhhCCCeEEEecc
Confidence 45667788888999999999995
No 110
>KOG3861|consensus
Probab=49.13 E-value=19 Score=29.33 Aligned_cols=39 Identities=18% Similarity=0.435 Sum_probs=27.4
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
..++|+|-+||=+.-..-.|+-|+.+++ ..=+++||+|-
T Consensus 51 ~~Vk~~i~agP~~~Ft~~Efevlkkyve----~GGsl~vllGE 89 (438)
T KOG3861|consen 51 ARVKIFILAGPQDRFTEDEFEVLKKYVE----VGGSLVVLLGE 89 (438)
T ss_pred cceeEEEecCcccccchhHHHHHHHHHh----cCCeEEEEecC
Confidence 4689999999965544445555544443 37899999994
No 111
>TIGR01551 major_capsid_P2 phage major capsid protein, P2 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage P2 and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=48.85 E-value=25 Score=27.99 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=32.8
Q ss_pred EeCCCCC-CCCCCCchHHHHHHHHhh--------CCCCEEEeecc--ccCCCCccccC
Q psy149 13 SAGPYTQ-SDTLSYKPLEDLIALTVQ--------QEPDVLILIGP--LLDTSHPLLLN 59 (86)
Q Consensus 13 AaGPfT~-~d~l~y~pL~~ll~~v~~--------~~PdvlIL~GP--FiD~~h~~i~~ 59 (86)
.+|+-+. ...=+|.-|+.++.-+.+ +.||+|+|+|= .-|...|++..
T Consensus 179 ~~~~I~i~G~~gdy~NLDalv~d~~~~~I~~~~r~dpdLVvivG~dLla~~~~~l~n~ 236 (327)
T TIGR01551 179 SSGKITIFGDNADYANLDALAFDLKQNQLDPRHRNDPDLVVLVGADLVSKETKLIQQK 236 (327)
T ss_pred CCceEEEcCCCCCccCHHHHHHHHHHccCCHHHcCCCCEEEEEChhhhhhhhhhhhhc
Confidence 5566555 456788899888866644 78999999994 33455566655
No 112
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=48.81 E-value=18 Score=28.30 Aligned_cols=18 Identities=28% Similarity=0.708 Sum_probs=14.1
Q ss_pred HHHHHHhhCCCCEEEeec
Q psy149 30 DLIALTVQQEPDVLILIG 47 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~G 47 (86)
.+.+.+.+.+||+|++.|
T Consensus 144 ~i~~Ll~~~~PDIlViTG 161 (283)
T TIGR02855 144 KVLDLIEEVRPDILVITG 161 (283)
T ss_pred HHHHHHHHhCCCEEEEeC
Confidence 345556678999999998
No 113
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=48.38 E-value=17 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=25.2
Q ss_pred CCchHHHHHHHHhh-CCCCEEEeeccccCCC
Q psy149 24 SYKPLEDLIALTVQ-QEPDVLILIGPLLDTS 53 (86)
Q Consensus 24 ~y~pL~~ll~~v~~-~~PdvlIL~GPFiD~~ 53 (86)
.|+.|..+++++.- .+.|.+|++|=+||.-
T Consensus 10 ~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRG 40 (257)
T cd07422 10 CYDELQRLLEKINFDPAKDRLWLVGDLVNRG 40 (257)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEecCcCCCC
Confidence 57899999999875 4689999999999943
No 114
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=48.23 E-value=22 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.7
Q ss_pred CchHHHHHHHHhhCCCCEEEeecc
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
++-|.++-+++.+.+||++|++.|
T Consensus 29 ~~a~~~l~~~l~~~~Pd~IvvvS~ 52 (272)
T cd07362 29 IKGMKEIRKRIEELKPDVILVISC 52 (272)
T ss_pred HHHHHHHHHHhhHcCCCEEEEECC
Confidence 467778888888889999999999
No 115
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=47.80 E-value=22 Score=25.61 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=17.7
Q ss_pred hHHHHHHHHhhC--CCCEEEeeccccCC
Q psy149 27 PLEDLIALTVQQ--EPDVLILIGPLLDT 52 (86)
Q Consensus 27 pL~~ll~~v~~~--~PdvlIL~GPFiD~ 52 (86)
.+.++.+.++.. +||+||+.|=+.+.
T Consensus 27 ~~~~i~~~~~~~~~~~D~viiaGDl~~~ 54 (232)
T cd07393 27 HTEKIKENWDNVVAPEDIVLIPGDISWA 54 (232)
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCCCccC
Confidence 344444444443 99999999998753
No 116
>KOG2852|consensus
Probab=47.49 E-value=11 Score=30.41 Aligned_cols=13 Identities=46% Similarity=0.767 Sum_probs=11.1
Q ss_pred eeEEEEeCCCCCC
Q psy149 8 LSMFVSAGPYTQS 20 (86)
Q Consensus 8 l~i~vAaGPfT~~ 20 (86)
-+|++|+||||..
T Consensus 198 ~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 198 HKIVVSAGPWTSK 210 (380)
T ss_pred eEEEEecCCCchh
Confidence 4789999999965
No 117
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=47.48 E-value=23 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=20.6
Q ss_pred chHHHHHHHHhhCCCCEEEeeccc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
+-+.++-++|++.+||++|++.|=
T Consensus 37 ~a~~~~~~~i~~~~Pd~IVViSpH 60 (294)
T cd07372 37 WAYERARESIEALKPDVLLVHSPH 60 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCC
Confidence 567778888899999999999884
No 118
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=47.31 E-value=21 Score=28.46 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=15.7
Q ss_pred HHHHHHHHhhCCCCEEEee
Q psy149 28 LEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~ 46 (86)
..++.+.+.+.+||++|++
T Consensus 71 ~~~~~~~~~~~~pd~vIlI 89 (373)
T PF02684_consen 71 FRKLVERIKEEKPDVVILI 89 (373)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 4567778889999999984
No 119
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=46.89 E-value=19 Score=27.78 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHhh-CCCCEEEeeccccCCC
Q psy149 24 SYKPLEDLIALTVQ-QEPDVLILIGPLLDTS 53 (86)
Q Consensus 24 ~y~pL~~ll~~v~~-~~PdvlIL~GPFiD~~ 53 (86)
.|+.|..+++++.- ...|.++++|=+||.-
T Consensus 12 c~daL~~LL~~i~f~~~~D~l~~lGDlVdRG 42 (279)
T TIGR00668 12 CYDELQALLERVEFDPGQDTLWLTGDLVARG 42 (279)
T ss_pred CHHHHHHHHHHhCcCCCCCEEEEeCCccCCC
Confidence 57899999999973 4679999999999954
No 120
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=46.67 E-value=24 Score=26.08 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~ 53 (86)
+.+|.+.|--- =+++.|..+++.+++.+||++|.+|=+.+..
T Consensus 4 ~~kIl~iSDiH-----gn~~~le~l~~~~~~~~~D~vv~~GDl~~~g 45 (224)
T cd07388 4 VRYVLATSNPK-----GDLEALEKLVGLAPETGADAIVLIGNLLPKA 45 (224)
T ss_pred eeEEEEEEecC-----CCHHHHHHHHHHHhhcCCCEEEECCCCCCCC
Confidence 44555554332 2568899999998889999999999888754
No 121
>KOG3818|consensus
Probab=46.49 E-value=13 Score=31.22 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~ 53 (86)
-++.|..+++.-+...|-.+||||+|-.+.
T Consensus 298 vm~aL~kifqgy~~~pP~~iIlcG~FtS~p 327 (525)
T KOG3818|consen 298 VMEALRKIFQGYKDAPPTAIILCGSFTSSP 327 (525)
T ss_pred HHHHHHHHHhhccCCCCeEEEEeccccccc
Confidence 356788888888889999999999998664
No 122
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=46.04 E-value=17 Score=26.93 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=11.6
Q ss_pred hhCCCCEEEeecc
Q psy149 36 VQQEPDVLILIGP 48 (86)
Q Consensus 36 ~~~~PdvlIL~GP 48 (86)
.+.+||++|++||
T Consensus 61 ~~~~p~~vvilgP 73 (266)
T cd07361 61 DPGKPKRVVILGP 73 (266)
T ss_pred ccCCCCEEEEECC
Confidence 3689999999999
No 123
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=45.99 E-value=12 Score=28.04 Aligned_cols=25 Identities=8% Similarity=0.128 Sum_probs=16.7
Q ss_pred chHHHHHHHHhhCCCCEEEeecccc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
+-|.++-+.+.+.+||++|+++|=-
T Consensus 32 ~~~~~~~~~l~~~~Pd~ivviS~H~ 56 (280)
T cd07370 32 DGLKEIGRRARELGVDTIVVFDTHW 56 (280)
T ss_pred HHHHHHHHHhhHcCCCEEEEECCCc
Confidence 3444444445456999999998744
No 124
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.84 E-value=80 Score=21.72 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHhhC-CCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhcccc
Q psy149 28 LEDLIALTVQQ-EPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQPLE 82 (86)
Q Consensus 28 L~~ll~~v~~~-~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~~~~ 82 (86)
+..|-..+... +||+|++++=-=|.....-..+.-..+.+++ ++-+..+++.++
T Consensus 62 l~r~~~~v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~-~~~l~~ii~~~~ 116 (204)
T cd01830 62 LARFDRDVLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEEL-IAGYRQLIRRAH 116 (204)
T ss_pred HHHHHHHHhcCCCCCEEEEecccccccccccccccCCCCHHHH-HHHHHHHHHHHH
Confidence 33343334444 6999888887777765332211112344443 445555555554
No 125
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=45.83 E-value=46 Score=19.94 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=23.3
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
...+.+...+.+||.+|..|=++|.....
T Consensus 20 ~~~~~~~~~~~~~d~ii~~GD~~~~~~~~ 48 (200)
T PF00149_consen 20 FRKLDEIAAENKPDFIIFLGDLVDGGNPS 48 (200)
T ss_dssp HHHHHHHHHHTTTSEEEEESTSSSSSSHH
T ss_pred HHHHHHHhccCCCCEEEeecccccccccc
Confidence 35666777789999999999998877643
No 126
>PRK03881 hypothetical protein; Provisional
Probab=45.79 E-value=23 Score=28.68 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=16.6
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+-+.++-+.+...+||++|++||
T Consensus 32 ~a~~~~~~~l~~~~Pd~IVVisp 54 (467)
T PRK03881 32 DALRELARRIAEKKPDTIIIISP 54 (467)
T ss_pred HHHHHHHHHHHHhCCCEEEEECC
Confidence 34455555555569999999999
No 127
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=45.16 E-value=33 Score=23.85 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCCc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h~ 55 (86)
++.+-..+++.+||.||++|=++|...+
T Consensus 34 ~~~~~~~i~~~~pd~vi~lGDl~d~~~~ 61 (171)
T cd07384 34 RRAFKTALQRLKPDVVLFLGDLFDGGRI 61 (171)
T ss_pred HHHHHHHHHhcCCCEEEEeccccCCcEe
Confidence 4445555667999999999999987553
No 128
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=44.91 E-value=39 Score=21.49 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.|++|+ +-++++-+-.+++++...++=+.+|++|.
T Consensus 82 ~Vvias-----~gml~~G~s~~~l~~~~~d~~n~Ii~~gy 116 (126)
T PF10996_consen 82 KVVIAS-----SGMLEGGRSRHYLKRLASDPRNTIIFTGY 116 (126)
T ss_dssp EEEEES-----STTSSSSHHHHHHHHHTTSTTSEEEESSS
T ss_pred eEEEeC-----CCCCCCCHHHHHHHHHcCCCCCeEEEecC
Confidence 566654 44577779999999998888889999986
No 129
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=44.71 E-value=24 Score=22.60 Aligned_cols=26 Identities=31% Similarity=0.724 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+...+.++++++ .+||.+|.+|=++|
T Consensus 12 ~~~~~~~~~~~~--~~~d~vi~~GDi~~ 37 (156)
T PF12850_consen 12 NLDALEAVLEYI--NEPDFVIILGDIFD 37 (156)
T ss_dssp THHHHHHHHHHH--TTESEEEEES-SCS
T ss_pred ChhHHHHHHHHh--cCCCEEEECCCchh
Confidence 445678899988 56999999998887
No 130
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=44.62 E-value=21 Score=25.60 Aligned_cols=30 Identities=10% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCchHHHHHHHHh--------hCCCCEEEeeccccCCC
Q psy149 24 SYKPLEDLIALTV--------QQEPDVLILIGPLLDTS 53 (86)
Q Consensus 24 ~y~pL~~ll~~v~--------~~~PdvlIL~GPFiD~~ 53 (86)
+|+.|..+++.+. +.+.|.||++|=++|.-
T Consensus 9 ~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG 46 (208)
T cd07425 9 DLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRG 46 (208)
T ss_pred CHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCC
Confidence 5778899998876 45789999999999964
No 131
>PRK09982 universal stress protein UspD; Provisional
Probab=44.24 E-value=69 Score=20.86 Aligned_cols=20 Identities=20% Similarity=0.359 Sum_probs=18.2
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
+|-..+++++.+.++|++|+
T Consensus 90 ~p~~~I~~~A~~~~aDLIVm 109 (142)
T PRK09982 90 EMPETLLEIMQKEQCDLLVC 109 (142)
T ss_pred CHHHHHHHHHHHcCCCEEEE
Confidence 69999999999999999776
No 132
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=43.78 E-value=22 Score=27.92 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=18.7
Q ss_pred CchHHHHHHHHhhCCCCEEEeec
Q psy149 25 YKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
++.+.++-+.+++.+||++|++|
T Consensus 32 ~~a~~~l~~~v~~~~PD~iVV~~ 54 (329)
T cd07369 32 EEATLKLGRTLTAARPDVIIAFL 54 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEc
Confidence 35677778888889999999983
No 133
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=43.68 E-value=36 Score=26.35 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=30.9
Q ss_pred CCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 18 TQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 18 T~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++..++|.+--+.+.+.+++.|||++|=+-.+-+.+-
T Consensus 29 ~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~ 65 (281)
T COG1091 29 TDRAELDITDPDAVLEVIRETRPDVVINAAAYTAVDK 65 (281)
T ss_pred ccCccccccChHHHHHHHHhhCCCEEEECcccccccc
Confidence 3455688888888899999999999999999888765
No 134
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=43.53 E-value=30 Score=25.21 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCCEEEeecccc
Q psy149 30 DLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPFi 50 (86)
.+.+.+++.+||+++..+++.
T Consensus 81 ~l~~~i~~~~pDvVi~~~~~~ 101 (348)
T TIGR01133 81 QARRILKKFKPDAVIGFGGYV 101 (348)
T ss_pred HHHHHHHhcCCCEEEEcCCcc
Confidence 455667889999999987763
No 135
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=43.28 E-value=23 Score=24.98 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHhh-CCCCEEEeeccccCCC
Q psy149 24 SYKPLEDLIALTVQ-QEPDVLILIGPLLDTS 53 (86)
Q Consensus 24 ~y~pL~~ll~~v~~-~~PdvlIL~GPFiD~~ 53 (86)
+|+.|..+++.+.. .++|.+|.+|=++|..
T Consensus 12 ~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g 42 (207)
T cd07424 12 HYSLLQKALDAVGFDPARDRLISVGDLIDRG 42 (207)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEEeCCcccCC
Confidence 45788888888764 4799999999999854
No 136
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=43.11 E-value=30 Score=26.33 Aligned_cols=36 Identities=14% Similarity=0.397 Sum_probs=23.9
Q ss_pred EEEEeC-CCCCCCC------CCCchHHHHHHHHhhCCCCEEEe
Q psy149 10 MFVSAG-PYTQSDT------LSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 10 i~vAaG-PfT~~d~------l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
|++++| |.....+ -+-+-+.+.++.+.+..||..|+
T Consensus 73 VIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iI 115 (305)
T TIGR01763 73 VVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIV 115 (305)
T ss_pred EEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 455556 5544323 45677888889999888995544
No 137
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=43.05 E-value=27 Score=26.13 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.0
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
...+.+.+.+.+||++|.+|=.=-.++
T Consensus 50 ~~~l~~~i~~~~Pd~Vi~~G~a~gr~~ 76 (222)
T PRK13195 50 IAAAQQAIAEIEPALVIMLGEYPGRSM 76 (222)
T ss_pred HHHHHHHHHHHCCCEEEEeCccCCcCc
Confidence 345556667789999999996644443
No 138
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=43.00 E-value=31 Score=25.20 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.6
Q ss_pred HHHHHhhCCCCEEEeeccccCCCC
Q psy149 31 LIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 31 ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
+...++..+||++|++|=++|...
T Consensus 34 ~~~a~~~l~PD~Vi~lGDL~D~G~ 57 (195)
T cd08166 34 YHLALNFVQPDIVIFLGDLMDEGS 57 (195)
T ss_pred HHHHHhccCCCEEEEeccccCCCC
Confidence 445566789999999999999865
No 139
>PRK10116 universal stress protein UspC; Provisional
Probab=42.87 E-value=33 Score=21.88 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=18.4
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.++|++|+
T Consensus 89 ~~~~~I~~~a~~~~~DLiV~ 108 (142)
T PRK10116 89 ELSEHILEVCRKHHFDLVIC 108 (142)
T ss_pred CHHHHHHHHHHHhCCCEEEE
Confidence 58899999999999999998
No 140
>KOG1257|consensus
Probab=42.60 E-value=25 Score=30.11 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.8
Q ss_pred CchHHHHHHHHhhCCCCEEEe
Q psy149 25 YKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL 45 (86)
-+|..+|++.|++.||++||=
T Consensus 375 ~~~~~~L~e~V~~vKPtvLiG 395 (582)
T KOG1257|consen 375 HEEIKDLEEAVKEVKPTVLIG 395 (582)
T ss_pred ChHHHHHHHHHHhcCCcEEEe
Confidence 468999999999999999884
No 141
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=42.23 E-value=32 Score=23.41 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
...|.+.+++.+||++|-.=||
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~ 99 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPF 99 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcc
Confidence 3467788889999999977666
No 142
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=42.20 E-value=26 Score=25.75 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=22.3
Q ss_pred CCCchHHHHHHH-HhhCCCCEEEeeccccCCCC
Q psy149 23 LSYKPLEDLIAL-TVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 23 l~y~pL~~ll~~-v~~~~PdvlIL~GPFiD~~h 54 (86)
.+|+...+.+.. +.+.+||++|.+|=.--.+.
T Consensus 43 v~~~~~~~~l~~~~~~~~Pd~vl~~G~a~~r~~ 75 (209)
T PRK13193 43 VEYEKIEDLIVTKIREMKPILTLGIGVAPGRAK 75 (209)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEecccCCcCc
Confidence 346677777764 45579999999996644443
No 143
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=41.94 E-value=37 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=24.2
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+...+++..+.+..||++++.|=++|.
T Consensus 60 ~~~~~~~~~i~~~~~DlivltGD~~~~ 86 (284)
T COG1408 60 EEKLALLIAIANELPDLIVLTGDYVDG 86 (284)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeeecC
Confidence 566788888999999999999999996
No 144
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=41.79 E-value=64 Score=24.32 Aligned_cols=48 Identities=10% Similarity=0.372 Sum_probs=33.9
Q ss_pred CCceeEEEEeCCCCCCCCCC----------CchHHHHHHHHhh-CCCCEEEeeccccCCCCc
Q psy149 5 RRSLSMFVSAGPYTQSDTLS----------YKPLEDLIALTVQ-QEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~----------y~pL~~ll~~v~~-~~PdvlIL~GPFiD~~h~ 55 (86)
+.+..++|.||=|+...+.+ |.-+.++.++... .+..+.++ ||+.+|+
T Consensus 26 ~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~---fi~GNHE 84 (262)
T cd00844 26 GTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTI---FIGGNHE 84 (262)
T ss_pred CCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEE---EECCCCC
Confidence 46788999999998654433 4567888888886 33555554 6777775
No 145
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=41.41 E-value=42 Score=24.52 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=31.6
Q ss_pred EEEeCCCCCCC-----CCCCchHHHHHHHHhh---------CCCCEEEeeccccCC
Q psy149 11 FVSAGPYTQSD-----TLSYKPLEDLIALTVQ---------QEPDVLILIGPLLDT 52 (86)
Q Consensus 11 ~vAaGPfT~~d-----~l~y~pL~~ll~~v~~---------~~PdvlIL~GPFiD~ 52 (86)
+||.|++-... .-.|--|.++-++... -.+|+||++|=.-+.
T Consensus 66 ivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~g~yDlviflG~~~yy 121 (170)
T COG1880 66 IVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGNGNYDLVIFLGSIYYY 121 (170)
T ss_pred eEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCCCCcceEEEEeccHHH
Confidence 56777776532 2457789999999988 889999999965544
No 146
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=41.40 E-value=43 Score=20.11 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=18.5
Q ss_pred chHHHHHHHHhhCCCCEEEee
Q psy149 26 KPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~ 46 (86)
.+-..+++.+++.++|.+|+=
T Consensus 89 ~~~~~i~~~~~~~~~dliv~G 109 (140)
T PF00582_consen 89 DVADAIIEFAEEHNADLIVMG 109 (140)
T ss_dssp SHHHHHHHHHHHTTCSEEEEE
T ss_pred ccchhhhhccccccceeEEEe
Confidence 378999999999999999883
No 147
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=41.37 E-value=49 Score=18.74 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=14.1
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHh-hCCCCEEE
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTV-QQEPDVLI 44 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~-~~~PdvlI 44 (86)
|-.|||.+. +--.+.++.++ ...++..|
T Consensus 46 V~~G~f~~~-----~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 46 VRVGPFSSR-----EEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp EEECCECTC-----CHHHHHHHHHHHHHTS--EE
T ss_pred EEECCCCCH-----HHHHHHHHHHhHhhCCCCEE
Confidence 334777655 34455666665 45555443
No 148
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=41.11 E-value=44 Score=25.38 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCCcc--------ccCCCc----CCCHHHHHHHHHHHh
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSHPL--------LLNGSL----AETFEDFYVKLIDSI 77 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~--------i~~g~~----~~t~eelF~~~i~~i 77 (86)
+|.|+.++++.|...+.+|..|++|=.|...=. +++.++ ...+|+.+.+.+.+.
T Consensus 38 t~~~~~d~~~~I~gd~~~V~~iv~~g~dpH~yepsp~di~~i~~ADliv~nG~~le~w~~k~~~~~ 103 (303)
T COG0803 38 TFPPIADVVKNIAGDKVDVVSLVPPGADPHSYEPTPSDIAKLRKADLIVYNGLGLEPWLEKLLESA 103 (303)
T ss_pred ecHHHHHHHHHhcCCceeEEEecCCCCCCcCCCCCHHHHHHHHhCCEEEEcCCChHHHHHHHHHhc
Confidence 588999999999999999999999998887722 334443 667888556666543
No 149
>PF03167 UDG: Uracil DNA glycosylase superfamily; InterPro: IPR005122 This entry represents various uracil-DNA glycosylases and related DNA glycosylases (3.2.2 from EC), such as uracil-DNA glycosylase [], thermophilic uracil-DNA glycosylase [], G:T/U mismatch-specific DNA glycosylase (Mug) [], and single-strand selective monofunctional uracil-DNA glycosylase (SMUG1) []. These proteins have a 3-layer alpha/beta/alpha structure. Uracil-DNA glycosylases are DNA repair enzymes that excise uracil residues from DNA by cleaving the N-glycosylic bond, initiating the base excision repair pathway. Uracil in DNA can arise either through the deamination of cytosine to form mutagenic U:G mispairs, or through the incorporation of dUMP by DNA polymerase to form U:A pairs []. These aberrant uracil residues are genotoxic []. The sequence of uracil-DNA glycosylase is extremely well conserved [] in bacteria and eukaryotes as well as in herpes viruses. More distantly related uracil-DNA glycosylases are also found in poxviruses []. In eukaryotic cells, UNG activity is found in both the nucleus and the mitochondria. Human UNG1 protein is transported to both the mitochondria and the nucleus []. The N-terminal 77 amino acids of UNG1 seem to be required for mitochondrial localization, but the presence of a mitochondrial transit peptide has not been directly demonstrated. The most N-terminal conserved region contains an aspartic acid residue which has been proposed, based on X-ray structures [] to act as a general base in the catalytic mechanism. ; PDB: 1UI0_A 1UI1_A 2C2P_A 2C2Q_A 1MTL_B 1MWI_A 1MUG_A 1MWJ_A 1OKB_B 1OE6_A ....
Probab=40.81 E-value=52 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
...|.+.+...+|.++|++|=.
T Consensus 75 ~~~l~~~l~~~~p~iii~lG~~ 96 (152)
T PF03167_consen 75 EPFLEEELEIIKPKIIICLGKE 96 (152)
T ss_dssp HHHHHHHHHHHSSSEEEEESHH
T ss_pred hhhHHHHHHhcCCCEEEEEchH
Confidence 4467777777889999999943
No 150
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=40.71 E-value=23 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=20.8
Q ss_pred CchHHHHHHHHhhCCCCEEEe-eccccCCC
Q psy149 25 YKPLEDLIALTVQQEPDVLIL-IGPLLDTS 53 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL-~GPFiD~~ 53 (86)
+....++++.+++..||+.|. -||.....
T Consensus 52 ~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~ 81 (127)
T cd02068 52 IYEALELAKIAKEVLPNVIVVVGGPHATFF 81 (127)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCcchhhC
Confidence 346788999999999985555 45665543
No 151
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=40.70 E-value=34 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=25.2
Q ss_pred CCCchHHHHHHHHhhCCCC-EEEeeccccCCCC
Q psy149 23 LSYKPLEDLIALTVQQEPD-VLILIGPLLDTSH 54 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~Pd-vlIL~GPFiD~~h 54 (86)
-.+..+..+++.+++..|| +++..|=+++..-
T Consensus 20 ~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~ 52 (252)
T cd00845 20 GGAARLATLIKEERAENENTLLLDAGDNFDGSP 52 (252)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCCccCCCcc
Confidence 4667889999999999999 5566788877544
No 152
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=40.64 E-value=93 Score=20.64 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=10.1
Q ss_pred HHHhhCCCCEEEeec
Q psy149 33 ALTVQQEPDVLILIG 47 (86)
Q Consensus 33 ~~v~~~~PdvlIL~G 47 (86)
+.+...+||++++..
T Consensus 53 ~~~~~~~~d~v~i~~ 67 (183)
T cd04501 53 EDVIALKPAVVIIMG 67 (183)
T ss_pred HHHHhcCCCEEEEEe
Confidence 334568999777654
No 153
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=40.49 E-value=61 Score=24.23 Aligned_cols=42 Identities=14% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCceeEEEEeCCCCCC-------CCCCCc-h---HHHHHHHHhhCCCCEEEee
Q psy149 5 RRSLSMFVSAGPYTQS-------DTLSYK-P---LEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~-------d~l~y~-p---L~~ll~~v~~~~PdvlIL~ 46 (86)
|-.+-|+=.+.|.+.. +.+.|. | +...++.+++.++|++|++
T Consensus 128 G~kIgviG~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~~~~D~VI~l 180 (285)
T cd07405 128 GLKIAVIGLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQEKPDIVIAA 180 (285)
T ss_pred CEEEEEEEecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3344445556666543 245443 3 3445666676799999997
No 154
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=40.28 E-value=37 Score=24.01 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=25.7
Q ss_pred EEEEeC-CCCCCCCCCCchHHHHHHHHhh-CCCC-EEEe
Q psy149 10 MFVSAG-PYTQSDTLSYKPLEDLIALTVQ-QEPD-VLIL 45 (86)
Q Consensus 10 i~vAaG-PfT~~d~l~y~pL~~ll~~v~~-~~Pd-vlIL 45 (86)
++|+-+ |+..+...|++++.+.++.+.+ .+++ ++|+
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~ 118 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI 118 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE
Confidence 456666 8888888899999999999987 5554 4444
No 155
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=40.19 E-value=30 Score=29.71 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=15.4
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-++++.+++.+++||++|+
T Consensus 298 ~~~~l~~~i~~~kPD~vIl 316 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVIC 316 (608)
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 3456677888899999999
No 156
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=39.98 E-value=43 Score=23.83 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=18.3
Q ss_pred CCCCCCCCCCC-------chHHHHHHHHhhCCCCEEEeecc
Q psy149 15 GPYTQSDTLSY-------KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 15 GPfT~~d~l~y-------~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
-||....+..| ......+++..+..+..+++.||
T Consensus 11 ~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~ 51 (269)
T TIGR03015 11 KPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGE 51 (269)
T ss_pred CCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 47776555433 22333333333455667888887
No 157
>PRK15005 universal stress protein F; Provisional
Probab=39.77 E-value=40 Score=21.47 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=18.6
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.|-..+++++.+.++|++|+ |-
T Consensus 94 ~p~~~I~~~a~~~~~DLIV~-Gs 115 (144)
T PRK15005 94 SPKDRILELAKKIPADMIII-AS 115 (144)
T ss_pred CHHHHHHHHHHHcCCCEEEE-eC
Confidence 58889999999999998776 63
No 158
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=39.73 E-value=32 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=18.6
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|..+|++.+.+.+||++-+
T Consensus 122 vp~e~~v~~~~~~~pd~v~l 141 (197)
T TIGR02370 122 VPIDTVVEKVKKEKPLMLTG 141 (197)
T ss_pred CCHHHHHHHHHHcCCCEEEE
Confidence 49999999999999999887
No 159
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=39.69 E-value=30 Score=26.26 Aligned_cols=28 Identities=4% Similarity=0.031 Sum_probs=20.6
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
++-|.++-+++.+.+||++|++.|=--.
T Consensus 33 ~~al~~l~~~l~~~~Pd~IVViS~H~~~ 60 (282)
T TIGR02298 33 IDGHKEISRRAKEMGVDTIVVFDTHWLV 60 (282)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCc
Confidence 4556666677777899999999885433
No 160
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=39.59 E-value=34 Score=26.46 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=24.6
Q ss_pred chHHHHHHHHhh--CCCCEEEeeccccCCCC
Q psy149 26 KPLEDLIALTVQ--QEPDVLILIGPLLDTSH 54 (86)
Q Consensus 26 ~pL~~ll~~v~~--~~PdvlIL~GPFiD~~h 54 (86)
-.|.|+.+++++ ..=..+|++|++++.+.
T Consensus 205 GTL~dIa~kv~~~~i~rTAlIiVG~~l~~~~ 235 (254)
T COG2875 205 GTLEDIAEKVKEAGIRRTALIIVGDVLDPEG 235 (254)
T ss_pred eeHHHHHHHHHhcCceeEEEEEEccccCcCc
Confidence 369999999998 55569999999999765
No 161
>PF13941 MutL: MutL protein
Probab=39.27 E-value=26 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.7
Q ss_pred CchHHHHHHHHhhCCCCEEEeecc
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
|+.-.+=++.+.+.+||+++|.|=
T Consensus 110 ~~l~~~~l~~i~~~~PDiILLaGG 133 (457)
T PF13941_consen 110 YELTEEDLEEIREIRPDIILLAGG 133 (457)
T ss_pred cCCCHHHHHHHhccCCCEEEEeCC
Confidence 355567788899999999999994
No 162
>KOG1432|consensus
Probab=38.99 E-value=62 Score=26.41 Aligned_cols=24 Identities=13% Similarity=0.433 Sum_probs=20.5
Q ss_pred HHHHHHHhh-CCCCEEEeeccccCC
Q psy149 29 EDLIALTVQ-QEPDVLILIGPLLDT 52 (86)
Q Consensus 29 ~~ll~~v~~-~~PdvlIL~GPFiD~ 52 (86)
..|++++.+ ++||.|++.|=-|+.
T Consensus 89 t~F~~rvL~sE~PDlVVfTGD~i~g 113 (379)
T KOG1432|consen 89 TNFVSRVLASEKPDLVVFTGDNIFG 113 (379)
T ss_pred HHHHHHHHhccCCCEEEEeCCcccc
Confidence 468888876 999999999988877
No 163
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=38.83 E-value=47 Score=23.64 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++.+++.+++.+||.+|..|=++|...
T Consensus 24 ~~~i~~~~~~~~~d~iv~~GDl~~~~~ 50 (214)
T cd07399 24 TDWIVDNAEALNIAFVLHLGDIVDDGD 50 (214)
T ss_pred HHHHHHHHHHcCCCEEEECCCccCCCC
Confidence 355666667788999999999987554
No 164
>KOG2442|consensus
Probab=38.81 E-value=28 Score=29.55 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.6
Q ss_pred CCcCCCceeEEEEeCCCCCCCCC
Q psy149 1 MTLTRRSLSMFVSAGPYTQSDTL 23 (86)
Q Consensus 1 ~~l~~~~l~i~vAaGPfT~~d~l 23 (86)
|+-||.++-+.||.||.++.+.+
T Consensus 386 ~t~~geSVMieVA~G~~s~~Eki 408 (541)
T KOG2442|consen 386 ITKNGESVMIEVARGPSSTEEKI 408 (541)
T ss_pred hccCCceEEEEEecCCCCCCCCc
Confidence 35688999999999998888765
No 165
>PLN02533 probable purple acid phosphatase
Probab=38.59 E-value=67 Score=25.77 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhccc
Q psy149 29 EDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQPL 81 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~~~ 81 (86)
...++.+++.+||.+|+.|=+++.++ .+..-|-|.+.+.++...+
T Consensus 155 ~~tl~~i~~~~pD~vl~~GDl~y~~~--------~~~~wd~f~~~i~~l~s~~ 199 (427)
T PLN02533 155 KSTLEHVSKWDYDVFILPGDLSYANF--------YQPLWDTFGRLVQPLASQR 199 (427)
T ss_pred HHHHHHHHhcCCCEEEEcCccccccc--------hHHHHHHHHHHhhhHhhcC
Confidence 46788899999999999998887643 1222234556666665443
No 166
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=38.38 E-value=31 Score=26.65 Aligned_cols=51 Identities=16% Similarity=0.346 Sum_probs=30.1
Q ss_pred HHHHHHHHhhCCCCEEEeecc------------ccCCCCccccCC----CcC-CCHHHHHHHHHHHhh
Q psy149 28 LEDLIALTVQQEPDVLILIGP------------LLDTSHPLLLNG----SLA-ETFEDFYVKLIDSIV 78 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GP------------FiD~~h~~i~~g----~~~-~t~eelF~~~i~~i~ 78 (86)
+..|-+.+.+.+||+||+.|= +...---.|..| +.. -..||..|..|+++.
T Consensus 56 ~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~d~~~g~~de~~R~~i~~la 123 (346)
T PF02350_consen 56 IIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSGDRTEGMPDEINRHAIDKLA 123 (346)
T ss_dssp HHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-TTSSTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCccccCCCCchhhhhhhhhhhh
Confidence 345556677799999999982 111111234556 665 478999999888764
No 167
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=38.22 E-value=35 Score=22.73 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.3
Q ss_pred hhCCCCEEEeeccc
Q psy149 36 VQQEPDVLILIGPL 49 (86)
Q Consensus 36 ~~~~PdvlIL~GPF 49 (86)
+..+.+.+|+.||-
T Consensus 70 ~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 70 NFDDVKCIIIAGPG 83 (133)
T ss_dssp HTTTCSEEEEEEST
T ss_pred ccccccEEEEECCH
Confidence 34589999999993
No 168
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=38.19 E-value=41 Score=27.44 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=36.6
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEee----ccccCCCCcc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILI----GPLLDTSHPL 56 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~----GPFiD~~h~~ 56 (86)
|==|....+|.-+-..+.++.|++..|++++.+ |-||...-|.
T Consensus 174 S~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt 220 (416)
T COG4100 174 SKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPT 220 (416)
T ss_pred ccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCcc
Confidence 334888889999999999999999999999975 8888877653
No 169
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.85 E-value=69 Score=22.63 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=37.2
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCCC--------ccccCCCc----CCCHHHHHHHHHHH
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTSH--------PLLLNGSL----AETFEDFYVKLIDS 76 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h--------~~i~~g~~----~~t~eelF~~~i~~ 76 (86)
+.||.++++.|...+.+|-.|+.|=.|..+ ..+++.++ ...||....+++..
T Consensus 9 ~~pl~~iv~~I~gd~~~V~~l~p~g~dpH~ye~tp~d~~~l~~Adliv~~G~~~E~~~~k~~~~ 72 (203)
T cd01145 9 FPDLKDLVREVAGDAVIVSALTPPGVDPHQYQLKPSDIAKMRKADLVVTSGHELEGFEPKLAEL 72 (203)
T ss_pred ChHHHHHHHHHcCCcEEEEEecCCCCCcccccCCHHHHHHHhcCCEEEEcCCCHHHHHHHHHHh
Confidence 468999999999999999999999888666 12444443 45677655555554
No 170
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=37.85 E-value=28 Score=25.05 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCCchHHHHHHHHh-hCCCCEEEeeccccCC
Q psy149 23 LSYKPLEDLIALTV-QQEPDVLILIGPLLDT 52 (86)
Q Consensus 23 l~y~pL~~ll~~v~-~~~PdvlIL~GPFiD~ 52 (86)
=+|+.|..+++.+. ..+.|.+|.+|=+||.
T Consensus 25 g~~~~l~~~l~~~~~~~~~d~l~~lGD~vdr 55 (218)
T PRK09968 25 GEYQLLQSRLHQLSFCPETDLLISVGDNIDR 55 (218)
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEECCCCcCC
Confidence 35788999998886 4578999999999994
No 171
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=37.61 E-value=36 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=19.2
Q ss_pred CchHHHHHHHHhhCCCCEEEe
Q psy149 25 YKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL 45 (86)
--|..+|++.+.+.+||+|-|
T Consensus 125 ~vp~e~~v~~~~~~~~~~V~l 145 (213)
T cd02069 125 MVPIEKILEAAKEHKADIIGL 145 (213)
T ss_pred CCCHHHHHHHHHHcCCCEEEE
Confidence 359999999999999999988
No 172
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.54 E-value=61 Score=23.57 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=22.2
Q ss_pred EeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 13 SAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 13 AaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+.-.|... .-+ +...++++++.+||++++.+-
T Consensus 170 ~~~~~~~~-~~d---~~~~v~~l~~~~pd~v~~~~~ 201 (312)
T cd06346 170 NVVAHEEG-KSS---YSSEVAAAAAGGPDALVVIGY 201 (312)
T ss_pred EEEeeCCC-CCC---HHHHHHHHHhcCCCEEEEecc
Confidence 44455443 333 457889999999999998764
No 173
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=37.48 E-value=41 Score=27.03 Aligned_cols=46 Identities=17% Similarity=0.419 Sum_probs=34.2
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
.+.-.|-||.=....|.+ +-+..+++.+++.+||++| +||=+++-.
T Consensus 49 eIv~TiiCGDnyf~en~e-ea~~~i~~mv~~~~pD~vi-aGPaFnagr 94 (349)
T PF07355_consen 49 EIVATIICGDNYFNENKE-EALKKILEMVKKLKPDVVI-AGPAFNAGR 94 (349)
T ss_pred EEEEEEEECcchhhhCHH-HHHHHHHHHHHhcCCCEEE-EcCCcCCch
Confidence 344466788755555543 4778889999999999875 899988765
No 174
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=37.35 E-value=34 Score=27.78 Aligned_cols=18 Identities=44% Similarity=0.818 Sum_probs=15.4
Q ss_pred HHHHHHHhhCCCCEEEee
Q psy149 29 EDLIALTVQQEPDVLILI 46 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~ 46 (86)
.++++++.++|||++|++
T Consensus 75 ~~~~~~i~~~kpD~~i~I 92 (381)
T COG0763 75 RELVRYILANKPDVLILI 92 (381)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 567888889999999984
No 175
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.26 E-value=39 Score=22.96 Aligned_cols=20 Identities=15% Similarity=0.506 Sum_probs=17.6
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|..++++.+.+.+||+|-+
T Consensus 41 vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILV 60 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEE
Confidence 48899999999999998877
No 176
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=37.16 E-value=66 Score=24.50 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=26.0
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
..++ ++..-+|.+.+.- +..++.++++.+||++++.|..-|
T Consensus 175 ~G~~-~~~~~~~~~~~~~----~~~~v~~i~~~~~d~v~~~~~~~~ 215 (366)
T COG0683 175 LGGE-VVVEEVYAPGDTD----FSALVAKIKAAGPDAVLVGGYGPD 215 (366)
T ss_pred CCCe-EEEEEeeCCCCCC----hHHHHHHHHhcCCCEEEECCCCcc
Confidence 3455 4444555554322 888999999999995555444433
No 177
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=37.16 E-value=43 Score=25.03 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=17.4
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+-|.++-+++.+.+||++|++.|
T Consensus 26 ~al~~l~~~l~~~~Pd~IvviS~ 48 (268)
T cd07371 26 WAYERAGASLAASRPDVVLVYST 48 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC
Confidence 45555566666679999999999
No 178
>PRK15456 universal stress protein UspG; Provisional
Probab=37.01 E-value=45 Score=21.47 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.8
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+|-.++++++.+.++|++|+ |-
T Consensus 92 ~~~~~I~~~a~~~~~DLIVm-G~ 113 (142)
T PRK15456 92 SVRDEVNELAEELGADVVVI-GS 113 (142)
T ss_pred ChHHHHHHHHhhcCCCEEEE-cC
Confidence 58889999999999999887 54
No 179
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=36.89 E-value=31 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHhhC--------CCCEEEeeccccCCC
Q psy149 24 SYKPLEDLIALTVQQ--------EPDVLILIGPLLDTS 53 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~--------~PdvlIL~GPFiD~~ 53 (86)
.|+.|..+++++... +.|.+|++|=+||.-
T Consensus 10 ~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRG 47 (222)
T cd07413 10 HAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRG 47 (222)
T ss_pred CHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCC
Confidence 357788888887543 467999999998864
No 180
>TIGR03011 sulf_tusB_dsrH sulfur relay protein TusB/DsrH. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=36.60 E-value=39 Score=20.96 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 11 FVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 11 ~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
++...||.++ -+.+.++.+... |.|+|+|
T Consensus 2 i~~~sP~~~~------~~~~~l~~~~~~--d~vll~~ 30 (94)
T TIGR03011 2 TVKKSPFEDN------DLELCLRLLGPG--DAILLLQ 30 (94)
T ss_pred cccCCCCccc------hHHHHHHhcCCC--CeEEEeh
Confidence 3557889766 588888887653 3677774
No 181
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=36.59 E-value=70 Score=17.98 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=25.7
Q ss_pred eeEEEEeCCCCCCC------CCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 8 LSMFVSAGPYTQSD------TLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 8 l~i~vAaGPfT~~d------~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.+++=|.|=|+..+ -++..-+..+.+.+++..|++.|-+-.
T Consensus 3 vT~~~~~G~ys~~~~~~l~~v~~r~e~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 3 VTILEGEGGYSGEEKTVLYTVVSRRELPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp -EEEE-EESSSSS--EEEEEEEECCHHHHHHHHHHCC-TT-EEEE--
T ss_pred EeEEEEEEeecCCCeEEEEEEEeHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 44555666665444 256678999999999999999987643
No 182
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=36.59 E-value=44 Score=22.24 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHhhC-CCCEEEeecccc
Q psy149 24 SYKPLEDLIALTVQQ-EPDVLILIGPLL 50 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~-~PdvlIL~GPFi 50 (86)
++..+..+++.++.. +||.+|.+|=++
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 12 PLRATELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred CcchhHhHHHHHhhccCCCEEEEcCCCC
Confidence 345667777777776 899999999876
No 183
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=36.57 E-value=62 Score=23.67 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=24.7
Q ss_pred CCceeEEEEeCCCCCCC-------CCCCch----HHHHHHHHhhCCCCEEEeec
Q psy149 5 RRSLSMFVSAGPYTQSD-------TLSYKP----LEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d-------~l~y~p----L~~ll~~v~~~~PdvlIL~G 47 (86)
|..+-|+=.+.|++..- .+.|.. +...++.+++.++|++|++.
T Consensus 138 g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~IIvl~ 191 (277)
T cd07410 138 GVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRAEGADVVVVLA 191 (277)
T ss_pred CCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 33444444456665431 333433 44556667767899999973
No 184
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=36.52 E-value=38 Score=25.28 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+.+.+||+++|-|
T Consensus 69 ~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 69 RALVEALDEYGPDLVVLAG 87 (200)
T ss_pred HHHHHHHHhcCCCEEEEcc
Confidence 5788999999999999976
No 185
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=36.47 E-value=64 Score=23.04 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEe
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
++++.+|.....++.+.+.|.+++....+.++.++++
T Consensus 1 ~l~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~I 37 (212)
T cd03146 1 KLLLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFV 37 (212)
T ss_pred CEEEEeCCcccccccchHHHHHHHHHhccCCCeEEEE
Confidence 4677788877655667789999988887777888776
No 186
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=36.43 E-value=34 Score=24.64 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHhh----------CCCCEEEeeccccCC
Q psy149 24 SYKPLEDLIALTVQ----------QEPDVLILIGPLLDT 52 (86)
Q Consensus 24 ~y~pL~~ll~~v~~----------~~PdvlIL~GPFiD~ 52 (86)
+|+.|..+++++.- .+.|.+|++|=+||.
T Consensus 12 ~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr 50 (234)
T cd07423 12 CYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR 50 (234)
T ss_pred CHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC
Confidence 57899999999832 146899999999994
No 187
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=36.18 E-value=50 Score=19.64 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=15.7
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
+..++.+.+++.++|+||+
T Consensus 81 ~~~~i~~~~~~~~~dlvvi 99 (130)
T cd00293 81 PAEAILEAAEELGADLIVM 99 (130)
T ss_pred CHHHHHHHHHHcCCCEEEE
Confidence 4688888888888988876
No 188
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=36.10 E-value=40 Score=23.16 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred CCCCchHHHHHHHHhhCCCCEEEeecccc
Q psy149 22 TLSYKPLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 22 ~l~y~pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
.+--.-+.++|++++ +...+||+||=.
T Consensus 72 TlvN~Ti~~iL~~~~--~~~~vil~GpS~ 98 (147)
T PF04016_consen 72 TLVNGTIDDILELAR--NAREVILYGPSA 98 (147)
T ss_dssp HCCTTTHHHHHHHTT--TSSEEEEESCCG
T ss_pred eeecCCHHHHHHhCc--cCCeEEEEecCc
Confidence 344466889999988 467889999966
No 189
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=35.92 E-value=27 Score=25.24 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=16.4
Q ss_pred CCchHHHHHHH-HhhCCCCEEEeecccc
Q psy149 24 SYKPLEDLIAL-TVQQEPDVLILIGPLL 50 (86)
Q Consensus 24 ~y~pL~~ll~~-v~~~~PdvlIL~GPFi 50 (86)
+|+-..+.+.. +.+.+||++|.+|=-=
T Consensus 44 ~~~~~~~~l~~~l~~~~PdlVIhlGva~ 71 (202)
T PF01470_consen 44 SYEKAFEALEELLEEHQPDLVIHLGVAG 71 (202)
T ss_dssp SHHHHHHHHHHHHHHH--SEEEEEEE-T
T ss_pred chHhHHHHHHHHHHhcCCcEEEEEeecC
Confidence 35566666654 5557999999999543
No 190
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.92 E-value=42 Score=24.61 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=19.0
Q ss_pred CCchHHHHHHHHh-hCCCCEEEeeccc
Q psy149 24 SYKPLEDLIALTV-QQEPDVLILIGPL 49 (86)
Q Consensus 24 ~y~pL~~ll~~v~-~~~PdvlIL~GPF 49 (86)
+|+...+.+..+. +.+||++|.+|=.
T Consensus 45 ~~~~~~~~l~~~~~~~~Pd~vi~~G~a 71 (211)
T PRK13196 45 EPRAAMAALSRLLDELQPSAVLLTGLA 71 (211)
T ss_pred ChhHHHHHHHHHHHHhCCCEEEEeccc
Confidence 4666666665555 5799999999963
No 191
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=35.85 E-value=39 Score=27.74 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=23.8
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccC
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLN 59 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~ 59 (86)
.++||+||.|+. .|.+-+....-.+ .+=|-|+.-|.|..
T Consensus 129 ~viiatG~~~s~------~l~~~l~~~~g~~------~~~f~~~~~p~v~~ 167 (436)
T PRK05335 129 ITIIATGPLTSD------ALAEAIKALTGED------YLYFFDAAAPIVDK 167 (436)
T ss_pred CEEEeCCCCchH------HHHHHHHHhcCCc------cceecCCCCceecC
Confidence 689999998765 6666666552111 23455555555543
No 192
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=35.82 E-value=40 Score=20.10 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=16.1
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..++++.+.+.+||++|+
T Consensus 31 ~~~~~~~~~~~~~~d~iii 49 (112)
T PF00072_consen 31 SGEEALELLKKHPPDLIII 49 (112)
T ss_dssp SHHHHHHHHHHSTESEEEE
T ss_pred CHHHHHHHhcccCceEEEE
Confidence 3578889999999999987
No 193
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.74 E-value=39 Score=24.84 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCCchHHHHHHHH-hhCCCCEEEeeccc
Q psy149 23 LSYKPLEDLIALT-VQQEPDVLILIGPL 49 (86)
Q Consensus 23 l~y~pL~~ll~~v-~~~~PdvlIL~GPF 49 (86)
.+|+...+.+..+ .+.+||++|.+|=.
T Consensus 43 V~~~~~~~~l~~~l~~~~Pd~vlhlG~a 70 (208)
T PRK13194 43 VSFKRAREELEKVLDEIKPDITINLGLA 70 (208)
T ss_pred CchHhHHHHHHHHHHHhCCCEEEEeecc
Confidence 3577777777665 45699999999954
No 194
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=35.58 E-value=41 Score=24.66 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=30.8
Q ss_pred CCceeEEEEeCCCCCCC-C------CCCchHHHHHHHHhhC--CCCEEEeeccccCC
Q psy149 5 RRSLSMFVSAGPYTQSD-T------LSYKPLEDLIALTVQQ--EPDVLILIGPLLDT 52 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d-~------l~y~pL~~ll~~v~~~--~PdvlIL~GPFiD~ 52 (86)
.++++++..|=.--..+ + -.++-|...++.+++. +||.||+.|=++|.
T Consensus 12 ~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~ 68 (275)
T PRK11148 12 EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQD 68 (275)
T ss_pred CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCC
Confidence 35667766654442111 1 1234577778888764 69999999998874
No 195
>KOG1342|consensus
Probab=35.44 E-value=27 Score=28.79 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=22.1
Q ss_pred ccCCCcCCCHHHHHHHHHHHhhcccc
Q psy149 57 LLNGSLAETFEDFYVKLIDSIVQPLE 82 (86)
Q Consensus 57 i~~g~~~~t~eelF~~~i~~i~~~~~ 82 (86)
+++|--+++|+.+|+.+|.++++..+
T Consensus 227 L~dGidD~sy~~if~pIi~~v~e~f~ 252 (425)
T KOG1342|consen 227 LKDGIDDESYESIFKPIISKVMERFQ 252 (425)
T ss_pred hhccCCcHHHHHHHHHHHHHHHHHhC
Confidence 45666699999999999999998765
No 196
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=35.36 E-value=29 Score=25.58 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHhhCCCCEEEeec
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+.+-+..+++++.+.+||++|.+|
T Consensus 44 d~~~~~~~~~~l~~~~~DlIi~~g 67 (294)
T PF04392_consen 44 DPEKLRQIARKLKAQKPDLIIAIG 67 (294)
T ss_dssp -HHHHHHHHHHHCCTS-SEEEEES
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeC
Confidence 567889999999999999999998
No 197
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=35.33 E-value=16 Score=23.37 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=9.9
Q ss_pred eeccccCCCCccc
Q psy149 45 LIGPLLDTSHPLL 57 (86)
Q Consensus 45 L~GPFiD~~h~~i 57 (86)
++=||+|.+|+.-
T Consensus 26 lllPFvd~d~~i~ 38 (78)
T PF07297_consen 26 LLLPFVDEDHPIH 38 (78)
T ss_pred HHhcccCCCchHH
Confidence 3459999999753
No 198
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=35.21 E-value=41 Score=24.14 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=19.5
Q ss_pred HHHHHHHHhh--CCCCEEEeeccccCC
Q psy149 28 LEDLIALTVQ--QEPDVLILIGPLLDT 52 (86)
Q Consensus 28 L~~ll~~v~~--~~PdvlIL~GPFiD~ 52 (86)
...+++.+++ .+||+||++|=++|.
T Consensus 17 ~~~~l~~l~~~~~~~d~lii~GDi~d~ 43 (231)
T TIGR01854 17 TALFLDFLREEARKADALYILGDLFEA 43 (231)
T ss_pred HHHHHHHHHhhhccCCEEEEcCceecc
Confidence 3456666665 389999999999985
No 199
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=35.04 E-value=59 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCCCCCchHHHHHHHHhhCCCC-EEEeeccccCCC
Q psy149 20 SDTLSYKPLEDLIALTVQQEPD-VLILIGPLLDTS 53 (86)
Q Consensus 20 ~d~l~y~pL~~ll~~v~~~~Pd-vlIL~GPFiD~~ 53 (86)
.+.-.+..+..+++.++++.|| +++..|=+++.+
T Consensus 18 ~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~ 52 (257)
T cd07406 18 GPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPS 52 (257)
T ss_pred CCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCc
Confidence 3345789999999999998899 788888888764
No 200
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=35.01 E-value=43 Score=23.76 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=18.9
Q ss_pred CchHHHHHHHHhhCCCCEEEe
Q psy149 25 YKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL 45 (86)
-.|..+|++.+.+.+||++-|
T Consensus 119 ~~p~~~l~~~~~~~~~d~v~l 139 (201)
T cd02070 119 DVPPEEFVEAVKEHKPDILGL 139 (201)
T ss_pred CCCHHHHHHHHHHcCCCEEEE
Confidence 359999999999999999887
No 201
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=34.90 E-value=83 Score=23.10 Aligned_cols=40 Identities=8% Similarity=0.051 Sum_probs=25.8
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCC
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~ 53 (86)
++.-+|.... +=+-+...+.++++.+||++|++++.-|..
T Consensus 167 ~~~~~~~~~~--~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~ 206 (350)
T cd06366 167 SYRAAFPPSA--NDDDITDALKKLKEKDSRVIVVHFSPDLAR 206 (350)
T ss_pred EEEeccCCCC--ChhHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 3444565431 113456668888888899999998865544
No 202
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=34.87 E-value=85 Score=23.44 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=28.3
Q ss_pred EEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 10 i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
|+++.|-=........+-+.++++++.+....++++-||
T Consensus 184 i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p 222 (344)
T TIGR02201 184 IVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGP 222 (344)
T ss_pred EEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCC
Confidence 555544333556788888999999998777778877777
No 203
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.68 E-value=47 Score=24.70 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=14.0
Q ss_pred HHHHHHhhCCCCEEEeec
Q psy149 30 DLIALTVQQEPDVLILIG 47 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~G 47 (86)
.+.+.+++.|||+++.+|
T Consensus 76 ~~~~~l~~~kPdivi~~~ 93 (380)
T PRK00025 76 RLKRRLLAEPPDVFIGID 93 (380)
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 344555679999999998
No 204
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=34.64 E-value=50 Score=24.23 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
-+..+.+.+++.+||+++..|.+
T Consensus 76 ~~~~l~~~l~~~~pDvV~~~g~~ 98 (363)
T cd03786 76 LLIGLEAVLLEEKPDLVLVLGDT 98 (363)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc
Confidence 35677778888999999999865
No 205
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=34.54 E-value=1.1e+02 Score=18.72 Aligned_cols=38 Identities=24% Similarity=0.576 Sum_probs=28.1
Q ss_pred EEEEeCCCCCCCCCCCchHHHHHHHHhhCCC-CEEEeeccccCC
Q psy149 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEP-DVLILIGPLLDT 52 (86)
Q Consensus 10 i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~P-dvlIL~GPFiD~ 52 (86)
+.+++++ ++++....+.++++++..- +.-+-.||-.+.
T Consensus 57 ~~l~~~~-----~~~~~ev~~~~~~i~~~~~~~~~v~w~~~~~~ 95 (120)
T smart00865 57 VNITGGP-----DLTLKEVNEAMERIREKADPDAFIIWGPVIDE 95 (120)
T ss_pred EEEEcCC-----CCCHHHHHHHHHHHHHhcCCCceEEEccccCC
Confidence 4677776 6888888899999887543 666778885554
No 206
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=34.53 E-value=59 Score=24.81 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
-...|.+.+++.+||+||-..|-
T Consensus 111 ~~~~l~~~Ir~~~PdvViT~~p~ 133 (284)
T TIGR03445 111 AAGALVAVIREVRPHVVVTYDPN 133 (284)
T ss_pred HHHHHHHHHHHhCCcEEEecCCC
Confidence 45677788888999999988776
No 207
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=34.46 E-value=1e+02 Score=23.95 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=30.2
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHH
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDS 76 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~ 76 (86)
+-|.+|++.+++.+.+.+.-+-|+.|... +.++=++.++.+
T Consensus 56 ~~l~~L~~~a~~~~V~Fv~aisPg~~~~~----------s~~~d~~~L~~K 96 (306)
T PF07555_consen 56 AELKELADAAKANGVDFVYAISPGLDICY----------SSEEDFEALKAK 96 (306)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEBGTTT--T----------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEECccccccc----------CcHHHHHHHHHH
Confidence 56899999999999999999999998763 355555555555
No 208
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=34.24 E-value=37 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCchHHHHHHHHhhC---------CCCEEEeeccccCC
Q psy149 24 SYKPLEDLIALTVQQ---------EPDVLILIGPLLDT 52 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~---------~PdvlIL~GPFiD~ 52 (86)
.|+.|.++++++.-. +-|.||++|=+||.
T Consensus 12 ~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDR 49 (245)
T PRK13625 12 CYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDR 49 (245)
T ss_pred CHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCC
Confidence 467888999887532 34799999999994
No 209
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=34.23 E-value=72 Score=26.07 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHhh-CCCCEEEeec---cccCCCC
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTVQ-QEPDVLILIG---PLLDTSH 54 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~~-~~PdvlIL~G---PFiD~~h 54 (86)
.||||+||.+.. +|-+.+.+ ....++-+-+ |-||.+.
T Consensus 128 ~VViATG~~~s~---------~La~~L~~~~g~~~~~~~da~~p~i~~~s 168 (433)
T TIGR00137 128 ITVIATGPLTSP---------ALSEDLKELTGMDYLYFYDAAAPIVEGDS 168 (433)
T ss_pred eEEEeCCCCccH---------HHHHHHHHhhCCceEEEecCcCcEEecCC
Confidence 689999997753 45566666 3677777777 7777663
No 210
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.23 E-value=1.2e+02 Score=19.55 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=17.2
Q ss_pred chHHHHHHHHhhCCCCEEEeec
Q psy149 26 KPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+-+..+++.+++..|++.|++.
T Consensus 64 ~~~~~~i~~i~~~~p~~~ii~~ 85 (157)
T cd01833 64 DRLRALIDQMRAANPDVKIIVA 85 (157)
T ss_pred HHHHHHHHHHHHhCCCeEEEEE
Confidence 6788899999988898765543
No 211
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.22 E-value=70 Score=23.54 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=38.5
Q ss_pred CchHHHHHHHHhhCCCCEEEeec-cccCCCCcc--------ccCCCc----CCCHHHHHHHHHHHh
Q psy149 25 YKPLEDLIALTVQQEPDVLILIG-PLLDTSHPL--------LLNGSL----AETFEDFYVKLIDSI 77 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~G-PFiD~~h~~--------i~~g~~----~~t~eelF~~~i~~i 77 (86)
+.||.+|++.|...+.+|-.|+. |=.|..+=. |++.++ ...||..+.+.+.+.
T Consensus 9 ~~pl~~~v~~I~gd~v~V~~l~p~~g~dpH~y~~~p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~ 74 (264)
T cd01020 9 TNFWGSVAEAVGGDHVEVTSIITNPDVDPHDFEPTPTDAAKVSTADIVVYNGGGYDPWMTKLLADT 74 (264)
T ss_pred ccHHHHHHHHHcCCceEEEEecCCCCCCcccCCCCHHHHHHHhhCCEEEEeCCCchHHHHHHHHhc
Confidence 46999999999999999999999 999977621 334443 345666556665543
No 212
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=33.79 E-value=48 Score=23.06 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=16.5
Q ss_pred HHHHHHHhhCCCCEEEeec--cccCC
Q psy149 29 EDLIALTVQQEPDVLILIG--PLLDT 52 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G--PFiD~ 52 (86)
.++++.+++.+||++++.| -++..
T Consensus 69 ~~~~~~l~~~~~Dl~v~~~~~~il~~ 94 (181)
T PF00551_consen 69 EELLELLESLNPDLIVVAGYGRILPK 94 (181)
T ss_dssp HHHHHHHHHTT-SEEEESS-SS---H
T ss_pred hHHHHHHHhhccceeehhhhHHHhhh
Confidence 5688899999999999976 55543
No 213
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=33.76 E-value=23 Score=22.39 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=24.9
Q ss_pred HhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhccccC
Q psy149 35 TVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQPLEK 83 (86)
Q Consensus 35 v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~~~~~ 83 (86)
+...+||++|+..=-=|..++ +...+.-+-|+..+..+++.+++
T Consensus 57 ~~~~~~d~vvi~~G~ND~~~~-----~~~~~~~~~~~~~l~~~i~~~~~ 100 (179)
T PF13472_consen 57 FKDPKPDLVVISFGTNDVLNG-----DENDTSPEQYEQNLRRIIEQLRP 100 (179)
T ss_dssp HCGTTCSEEEEE--HHHHCTC-----TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCCEEEEEccccccccc-----ccccccHHHHHHHHHHHHHhhcc
Confidence 367999988887666676662 12233333455556666665543
No 214
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=33.47 E-value=55 Score=23.79 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCCEEEeecccc
Q psy149 30 DLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPFi 50 (86)
.+.+.+++.+||+++..+++.
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~ 100 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYV 100 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCc
Confidence 355667889999999988765
No 215
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=32.78 E-value=51 Score=28.18 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=27.4
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
.+||=|...++..|+-..+.++...+..+++++|||
T Consensus 519 f~~gG~~~~~~~~~~~~~~~~~a~~~sga~i~viCs 554 (619)
T TIGR00642 519 WHIAGIDTIQVEGGTTAEIVVEAFKKAGAQVAVLCS 554 (619)
T ss_pred HhcCceeeccCCCCCCHHHHHHHHHhcCCCEEEEeC
Confidence 456777777777777777888888888888888876
No 216
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=32.68 E-value=1.3e+02 Score=19.77 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=12.4
Q ss_pred HHHHHhhCCCCEEEeeccccCC
Q psy149 31 LIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 31 ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
.++.+...+||++|++-=-=|.
T Consensus 59 ~~~~~~~~~~d~vii~~G~ND~ 80 (185)
T cd01832 59 QLPAALALRPDLVTLLAGGNDI 80 (185)
T ss_pred HHHHHHhcCCCEEEEecccccc
Confidence 3444445799977665433343
No 217
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=32.67 E-value=1e+02 Score=22.82 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=23.8
Q ss_pred CCceeEEEEeCCCCCC-----CCCCCc-h---HHHHHHHHhhCCCCEEEee
Q psy149 5 RRSLSMFVSAGPYTQS-----DTLSYK-P---LEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~-----d~l~y~-p---L~~ll~~v~~~~PdvlIL~ 46 (86)
|..+-++=.+.|++.. ..+.|. | +.+.++++++.++|++|++
T Consensus 139 G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l 189 (281)
T cd07409 139 GEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIAL 189 (281)
T ss_pred CEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3334445455555533 234443 3 3445566666789999996
No 218
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=32.61 E-value=54 Score=27.13 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=31.8
Q ss_pred EEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 11 FVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 11 ~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
.|-||.=....|.+ +-...+++.+++.+||++| .||=+++..
T Consensus 49 TiiCGDnYf~en~e-ea~~~i~~mv~k~~pDv~i-aGPaFNagr 90 (431)
T TIGR01917 49 TVVCGDSFFGENLE-EAKAKVLEMIKGANPDIFI-AGPAFNAGR 90 (431)
T ss_pred EEEECchhhhhCHH-HHHHHHHHHHHhcCCCEEE-EcCccCCcc
Confidence 56688755555543 4568889999999999875 799998865
No 219
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=32.43 E-value=1.3e+02 Score=22.04 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHhh--CCCCEEEeec
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ--QEPDVLILIG 47 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~--~~PdvlIL~G 47 (86)
.+..-|++-.||-|... ...++++.+ -+|..||-+|
T Consensus 71 PR~aDillVeG~VT~~m-------~~~l~~~~e~~p~pk~VIAvG 108 (180)
T PRK14820 71 PRQADMLMVMGTIAKKM-------APVLKQVYLQMAEPRWVVAVG 108 (180)
T ss_pred CccceEEEEEecCCccc-------HHHHHHHHHhcCCCCeEEEEe
Confidence 46677999999998875 566666665 6777888774
No 220
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=32.34 E-value=59 Score=17.82 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=12.2
Q ss_pred HHHHHHHhhCCCCEEEee
Q psy149 29 EDLIALTVQQEPDVLILI 46 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~ 46 (86)
.+|++.++..+|..+|++
T Consensus 21 ~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 21 EELLEFIEQLNPRKVILV 38 (43)
T ss_dssp HHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 455666666688888875
No 221
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=32.25 E-value=26 Score=27.07 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEe
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
.+-+|+.+.|||+..+|. .| ..+.+.|+||-
T Consensus 172 p~~~Iia~~GPfs~~~n~------al---l~q~~id~vIt 202 (257)
T COG2099 172 PPARIIAMRGPFSEEDNK------AL---LEQYRIDVVVT 202 (257)
T ss_pred ChhhEEEecCCcChHHHH------HH---HHHhCCCEEEE
Confidence 345788899999987653 22 23346666664
No 222
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=32.00 E-value=55 Score=23.64 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhCCCCEEEeecccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
-+...++++++.+||++|+.+.--
T Consensus 168 d~~~~l~~i~~~~~d~Vi~~~~~~ 191 (324)
T cd06368 168 MYRPLLKEIKREKERRIILDCSPE 191 (324)
T ss_pred HHHHHHHHHhhccCceEEEECCHH
Confidence 356778899999999999988643
No 223
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=31.94 E-value=1.7e+02 Score=22.45 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHH---HHHHHHHHhhcc
Q psy149 30 DLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFED---FYVKLIDSIVQP 80 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~ee---lF~~~i~~i~~~ 80 (86)
.+.+.+++.+.|.++|+.|-++ -+++|.-+.++++ -|.+.+...+++
T Consensus 259 ~~~~~~~~~~ydl~~l~~p~~~----~~~D~~R~~~~~~~R~~~~~ll~~~l~~ 308 (325)
T TIGR01526 259 FLDSDIAEYPFDLTLLLKPNTE----WVDDGLRSLGSQKQRQEFQQLLKKLLDE 308 (325)
T ss_pred HHHHHHHhcCCCEEEECCCCCC----CccCCcccCchHHHHHHHHHHHHHHHHH
Confidence 4667777789999999999876 4566665666644 344444444443
No 224
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=31.86 E-value=50 Score=23.34 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=20.0
Q ss_pred CCCCchHHHHHHHHhhCCCCEEE
Q psy149 22 TLSYKPLEDLIALTVQQEPDVLI 44 (86)
Q Consensus 22 ~l~y~pL~~ll~~v~~~~PdvlI 44 (86)
.-..+=|..|++.+.+.+||+++
T Consensus 46 ~~E~~lL~~F~~~i~~~dPd~i~ 68 (188)
T cd05781 46 LDDRKIIREFVKYVKEYDPDIIV 68 (188)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEE
Confidence 45677899999999999999886
No 225
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=31.83 E-value=57 Score=27.01 Aligned_cols=43 Identities=21% Similarity=0.460 Sum_probs=32.2
Q ss_pred EEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 10 i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
=.|-||.=....|.+ +-...+++.+++.+||++| .||=+++..
T Consensus 48 aTiiCGDnYf~en~e-ea~~~i~~mv~k~~pDv~i-aGPaFNagr 90 (431)
T TIGR01918 48 HTVVCGDSFFGENLE-EAVARVLEMLKDKEPDIFI-AGPAFNAGR 90 (431)
T ss_pred EEEEECchhhhhCHH-HHHHHHHHHHHhcCCCEEE-EcCccCCcc
Confidence 356688755555543 4568889999999999875 799998865
No 226
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=31.69 E-value=79 Score=19.86 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=19.0
Q ss_pred CCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 23 LSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+.|-...++.+.+++++||++...++
T Consensus 58 ~~~~~~~~l~k~ik~~~~DvIh~h~~ 83 (139)
T PF13477_consen 58 LNYIKYFRLRKIIKKEKPDVIHCHTP 83 (139)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecC
Confidence 33334557778888999999987765
No 227
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=31.66 E-value=46 Score=23.98 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=17.0
Q ss_pred CCchHHHHHHHHhhCCCCEEE
Q psy149 24 SYKPLEDLIALTVQQEPDVLI 44 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlI 44 (86)
.-+-|..|++.+.+..||+++
T Consensus 58 E~~lL~~f~~~i~~~dPdii~ 78 (207)
T cd05785 58 EKELLEELVAIIRERDPDVIE 78 (207)
T ss_pred HHHHHHHHHHHHHHhCCCEEe
Confidence 345688899999999999764
No 228
>PHA02538 N capsid protein; Provisional
Probab=31.57 E-value=55 Score=26.27 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=30.6
Q ss_pred eCCCCC-CCCCCCchHHHHHHHHhh--------CCCCEEEeecc--ccCCCCccccC
Q psy149 14 AGPYTQ-SDTLSYKPLEDLIALTVQ--------QEPDVLILIGP--LLDTSHPLLLN 59 (86)
Q Consensus 14 aGPfT~-~d~l~y~pL~~ll~~v~~--------~~PdvlIL~GP--FiD~~h~~i~~ 59 (86)
+|+=+- ..+=+|.-|+.++.-+.+ +.||+|+|+|= .-|...|++..
T Consensus 191 ~~~I~i~G~~gdy~NLDalv~d~~~~lI~~~~r~dpdLVvivG~dLla~~~~~l~n~ 247 (348)
T PHA02538 191 SGKIRVFGKGGDYANLDALVMDLTNNLIDPWHQDDPDLVVIVGRDLLADKYFPIVNK 247 (348)
T ss_pred CccEEEeCCCCCccCHHHHHHHHHHccCCHHHcCCCCEEEEEChhhhhhhhhhhhhc
Confidence 444444 446688888888765544 78999999994 33455566655
No 229
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=31.32 E-value=61 Score=24.21 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=18.2
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
+..|-+.+++.+||+++..|++
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~ 96 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDT 96 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCc
Confidence 4567777888999999999974
No 230
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are
Probab=31.26 E-value=48 Score=24.18 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.8
Q ss_pred chHHHHHHHHhhCCCCEEE
Q psy149 26 KPLEDLIALTVQQEPDVLI 44 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlI 44 (86)
+=|..|++++.+..||+++
T Consensus 84 ~LL~~f~~~i~~~DPDiiv 102 (234)
T cd05776 84 ALLNFFLAKLQKIDPDVLV 102 (234)
T ss_pred HHHHHHHHHHhhcCCCEEE
Confidence 4588999999999999987
No 231
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=31.18 E-value=53 Score=22.96 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=43.0
Q ss_pred CCCCCCCCCchHHHHHHHHhhCCCC-EEEeeccccCCCCc-ccc------------------CCCcCCCHHHHHHHHHHH
Q psy149 17 YTQSDTLSYKPLEDLIALTVQQEPD-VLILIGPLLDTSHP-LLL------------------NGSLAETFEDFYVKLIDS 76 (86)
Q Consensus 17 fT~~d~l~y~pL~~ll~~v~~~~Pd-vlIL~GPFiD~~h~-~i~------------------~g~~~~t~eelF~~~i~~ 76 (86)
|..++--+|+.+...++.+.+..|+ .+||+|==.|..+. .+. +.......+++|+.++..
T Consensus 86 fD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 86 YDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 3445556678888888888776666 47888877776542 111 001155689999988888
Q ss_pred hhcccc
Q psy149 77 IVQPLE 82 (86)
Q Consensus 77 i~~~~~ 82 (86)
++++.+
T Consensus 166 i~~~~~ 171 (189)
T cd04121 166 VLMRHG 171 (189)
T ss_pred HHHhcC
Confidence 876654
No 232
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=74 Score=24.57 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=37.2
Q ss_pred CCceeEEEEeCCCCCCC------CCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 5 RRSLSMFVSAGPYTQSD------TLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d------~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
++.+++.-|.|=||.++ ...+..+.+|.+-+++..||..|-+-
T Consensus 227 ~~g~T~l~g~GgYt~~~k~vl~~Vv~~~e~~~lk~iv~~iDp~Afi~i~ 275 (289)
T COG1284 227 GRGVTYLDGEGGYTGEEKKVLYVVVTRLELPKLKEIVKEIDPNAFISIS 275 (289)
T ss_pred CCceEEEeceecCCCCceEEEEEEecHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56889999999999998 46888999999999999999887653
No 233
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=30.63 E-value=1.2e+02 Score=21.52 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=19.7
Q ss_pred chHHHHHHHHhhCCCCE-EEeec-cccC
Q psy149 26 KPLEDLIALTVQQEPDV-LILIG-PLLD 51 (86)
Q Consensus 26 ~pL~~ll~~v~~~~Pdv-lIL~G-PFiD 51 (86)
+-+.++++++++..|++ ++++| |.+.
T Consensus 131 ~~l~~~l~~i~~~~p~a~I~~~gyp~~~ 158 (259)
T cd01823 131 ARLKAVLDRIRERAPNARVVVVGYPRLF 158 (259)
T ss_pred HHHHHHHHHHHhhCCCcEEEEecccccc
Confidence 46778888899888987 77888 4443
No 234
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=30.56 E-value=52 Score=23.32 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=14.9
Q ss_pred chHHHHHHHHhhCCCCEEEee
Q psy149 26 KPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+-..++++.+.+.+||++||=
T Consensus 34 ~~~~~~~~~~~~~~pDlvLlD 54 (207)
T PRK15411 34 ETVDDLAIACDSLRPSVVFIN 54 (207)
T ss_pred CCHHHHHHHHhccCCCEEEEe
Confidence 456677777777788877664
No 235
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=30.14 E-value=65 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.6
Q ss_pred chHHHHHHHHhhCCCCEEEee
Q psy149 26 KPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~ 46 (86)
.|..++++.+.+.+||++-+.
T Consensus 37 ~~~~~~~~~i~~~~pdiV~iS 57 (125)
T cd02065 37 VPPEEIVEAAKEEDADVVGLS 57 (125)
T ss_pred CCHHHHHHHHHHcCCCEEEEe
Confidence 477888999999999988874
No 236
>CHL00175 minD septum-site determining protein; Validated
Probab=30.14 E-value=1e+02 Score=22.45 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHHhhCCCCEEEe-eccccCC
Q psy149 22 TLSYKPLEDLIALTVQQEPDVLIL-IGPLLDT 52 (86)
Q Consensus 22 ~l~y~pL~~ll~~v~~~~PdvlIL-~GPFiD~ 52 (86)
.+.-+-|.++++.+.+.+.|++|+ ++|.++.
T Consensus 109 ~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~ 140 (281)
T CHL00175 109 NVTRKNMNMLVDSLKNRGYDYILIDCPAGIDV 140 (281)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCH
Confidence 344445888888887657897777 8887754
No 237
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=30.13 E-value=72 Score=19.59 Aligned_cols=20 Identities=10% Similarity=0.350 Sum_probs=17.6
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
+|..++++.+.+.+.|++|+
T Consensus 81 ~~~~~I~~~a~~~~~dlIV~ 100 (132)
T cd01988 81 DIASGILRTAKERQADLIIM 100 (132)
T ss_pred CHHHHHHHHHHhcCCCEEEE
Confidence 48899999999999998877
No 238
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=30.10 E-value=49 Score=26.16 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=19.0
Q ss_pred hHHHHHHHHhhCCCCEEEeecccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
.-.+-++.+.+.+|+++|.=||--
T Consensus 189 ~~~~~l~~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 189 INDEALEFILEKRPDVLIIGGPPT 212 (304)
T ss_pred CccHHHHHHHhcCCCEEEecCCch
Confidence 445667777778999999999965
No 239
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=29.85 E-value=62 Score=23.59 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCCCCEEEeecc
Q psy149 28 LEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GP 48 (86)
+...|.++++.+||++|+.+.
T Consensus 170 ~~~~l~~i~~~~~d~vv~~~~ 190 (327)
T cd06382 170 YRPLLKEIKNSGDNRIIIDCS 190 (327)
T ss_pred HHHHHHHHHhcCceEEEEECC
Confidence 457788999999999998775
No 240
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=29.73 E-value=55 Score=25.12 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=20.3
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
.+...+.+++..+||++|+.+.-=+
T Consensus 222 d~~~~l~~i~~~~~dvIil~~~~~~ 246 (410)
T cd06363 222 DYQQILKQINQTKVNVIVVFASRQP 246 (410)
T ss_pred HHHHHHHHHhcCCCeEEEEEcChHH
Confidence 4667888999999999999886544
No 241
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=29.39 E-value=58 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.1
Q ss_pred chHHHHHHHHhhCCCCEEEee
Q psy149 26 KPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+|+......+++..||.|+|+
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf 21 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLF 21 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEE
T ss_pred ChHHHHHHHHHhhCCCeEEEE
Confidence 478888888999999988875
No 242
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=29.34 E-value=25 Score=27.43 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=26.4
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHH
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYV 71 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~ 71 (86)
-..+-+++|++.|||++.+.|+--+----.-+..++....+++.+
T Consensus 74 Gt~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aDi~~~~D~~~~ 118 (275)
T PF12683_consen 74 GTAEAFRKIKEKRPDILLIAGEPHEDPEVISSAADIVVNPDEISR 118 (275)
T ss_dssp --HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSSEEEE--HHHH
T ss_pred chHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccCeEeccchhhc
Confidence 456788999999999999999865532222334556666666665
No 243
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.33 E-value=1.3e+02 Score=22.76 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=30.7
Q ss_pred eeEEEEeC-CCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 8 LSMFVSAG-PYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 8 l~i~vAaG-PfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
-.|++.-| .+....++.-+.+.++++.+.+....|++.=||
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~ 217 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGP 217 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecCh
Confidence 35666667 677778899999999999999988545444445
No 244
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=29.26 E-value=62 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=18.0
Q ss_pred CCchHHHHH-HHHhhCCCCEEEeecccc
Q psy149 24 SYKPLEDLI-ALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 24 ~y~pL~~ll-~~v~~~~PdvlIL~GPFi 50 (86)
+|+...+.+ +.+.+.+||++|.+|=.=
T Consensus 42 ~~~~~~~~l~~~l~~~~Pd~vi~~G~a~ 69 (212)
T TIGR00504 42 TFFEAIEALQQAIDEIEPDIVIMLGLAP 69 (212)
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEeccCC
Confidence 355544444 555567999999999643
No 245
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=29.25 E-value=81 Score=26.07 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=24.7
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCC
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGS 61 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~ 61 (86)
-.+||+||-|+. .|.+-+... .--|.|- |.|+.-|.|..-.
T Consensus 131 ~~vIATGPLTs~------~La~~i~~l--tG~d~l~----FyDAaAPIi~~dS 171 (439)
T COG1206 131 ITVIATGPLTSD------ALAEKIKEL--TGEDYLY----FYDAAAPIIEFDS 171 (439)
T ss_pred cEEEecCCCCCH------HHHHHHHHh--hCCceEE----eecccCceeeccc
Confidence 468999999976 344444333 3344443 6677777665433
No 246
>PRK09620 hypothetical protein; Provisional
Probab=29.24 E-value=1.2e+02 Score=22.22 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=31.3
Q ss_pred ceeEEEEeCC---------CCCCCCCCCchHHHHHHHHhhCCCCEEEeecccc
Q psy149 7 SLSMFVSAGP---------YTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 7 ~l~i~vAaGP---------fT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
..+|+|.||| |=+..+-.|-. ..+.+++.+...+|+++.||.-
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiG-s~LA~~L~~~Ga~V~li~g~~~ 54 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIG-RIIAEELISKGAHVIYLHGYFA 54 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHH-HHHHHHHHHCCCeEEEEeCCCc
Confidence 4689999999 55554544544 3566777778899999999853
No 247
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=29.11 E-value=68 Score=22.22 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.2
Q ss_pred CCCCEEEeeccccCCCCc
Q psy149 38 QEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 38 ~~PdvlIL~GPFiD~~h~ 55 (86)
.+.|.+|++|-|....+.
T Consensus 25 gpFd~~ic~Gdff~~~~~ 42 (150)
T cd07380 25 GPFDALLCVGDFFGDDED 42 (150)
T ss_pred CCeeEEEEecCccCCccc
Confidence 678999999999987664
No 248
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=28.95 E-value=65 Score=23.20 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=17.4
Q ss_pred hHHHH-HHHHhhCCCCEEEeeccccC
Q psy149 27 PLEDL-IALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 27 pL~~l-l~~v~~~~PdvlIL~GPFiD 51 (86)
.+.+. .+.+++.+||.+|.+|=++.
T Consensus 19 ~~~~~~~~~~~~~~~dfvv~~GD~~y 44 (277)
T cd07378 19 AVAKAMAKVAAELGPDFILSLGDNFY 44 (277)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccc
Confidence 34444 44555589999999998763
No 249
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=28.92 E-value=67 Score=23.19 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=17.3
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
+...+.++++.+||+|++.+..
T Consensus 178 ~~~~v~~~~~~~pd~v~~~~~~ 199 (336)
T cd06360 178 FASYLAQIPDDVPDAVFVFFAG 199 (336)
T ss_pred hHHHHHHHHhcCCCEEEEeccc
Confidence 3457888999999999987653
No 250
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=28.72 E-value=65 Score=24.46 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCCchHHHHHHHHhhCCCCEEEeecccc
Q psy149 23 LSYKPLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
-++.-+..+++.+...++|+||..|.+.
T Consensus 14 g~~~~~~k~~~~~~~~~~D~lviaGDlt 41 (226)
T COG2129 14 GSEDSLKKLLNAAADIRADLLVIAGDLT 41 (226)
T ss_pred cchHHHHHHHHHHhhccCCEEEEeccee
Confidence 3566788999999999999999999998
No 251
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=28.66 E-value=1.3e+02 Score=21.68 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=17.4
Q ss_pred hHHHHHHHHhhCCCCEEEeecc
Q psy149 27 PLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.+...+..+++.+||++|+.|.
T Consensus 178 d~~~~l~~i~~~~~~~vi~~~~ 199 (334)
T cd06342 178 DFSAILTKIKAANPDAVFFGGY 199 (334)
T ss_pred cHHHHHHHHHhcCCCEEEEcCc
Confidence 3566688888899999998764
No 252
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.55 E-value=60 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=17.6
Q ss_pred chHHHHHHHHhhCCCCE-EEeeccc
Q psy149 26 KPLEDLIALTVQQEPDV-LILIGPL 49 (86)
Q Consensus 26 ~pL~~ll~~v~~~~Pdv-lIL~GPF 49 (86)
+-+..+++.+++..|+. +|++.|+
T Consensus 93 ~~l~~li~~i~~~~~~~~iil~t~~ 117 (188)
T cd01827 93 KDYETMIDSFQALPSKPKIYICYPI 117 (188)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 35778999988877773 6677775
No 253
>PRK12863 YciI-like protein; Reviewed
Probab=28.49 E-value=67 Score=20.13 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHHHHhhCCCCEEEeeccccCCCC
Q psy149 30 DLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
+=++++++. ...++..||+.|.+-
T Consensus 23 ~H~~~l~~~-~g~~l~~Gp~~~~~g 46 (94)
T PRK12863 23 AHLAYLETL-EGRLLAAGPLLDDDG 46 (94)
T ss_pred HHHHHHHHh-CCeEEEeCCCcCCCC
Confidence 334566666 678999999999753
No 254
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=28.46 E-value=1.1e+02 Score=22.63 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=21.2
Q ss_pred CCCCchHHHHHHHH--hhCCCCEEEeeccccC
Q psy149 22 TLSYKPLEDLIALT--VQQEPDVLILIGPLLD 51 (86)
Q Consensus 22 ~l~y~pL~~ll~~v--~~~~PdvlIL~GPFiD 51 (86)
....++..++++.. +..+||++|+++|=-.
T Consensus 16 ~~~~~~~~~~l~~~~~~~~~Pd~IvvispH~~ 47 (256)
T cd07952 16 DEESRKLNEAIKEEGAKNDDPDVLVVITPHGI 47 (256)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 44556667777654 3468999999999544
No 255
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=28.39 E-value=60 Score=23.42 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=17.7
Q ss_pred CCchHHHHHHHHhhCCCCEEE
Q psy149 24 SYKPLEDLIALTVQQEPDVLI 44 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlI 44 (86)
..+=|..|++.+.+..||+++
T Consensus 71 E~eLL~~f~~~i~~~DPDii~ 91 (230)
T cd05777 71 EEELLLAWRDFVQEVDPDIIT 91 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEE
Confidence 456688999999999999976
No 256
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=28.38 E-value=64 Score=23.59 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+.+.+||++++.|
T Consensus 68 ~~~~~~l~~~~~Dliv~ag 86 (207)
T PLN02331 68 DELVDALRGAGVDFVLLAG 86 (207)
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 4788889999999999987
No 257
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=28.36 E-value=1.3e+02 Score=22.72 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=27.9
Q ss_pred EEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 10 i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
|+++.|.=........+.+.++++++.+....++++-||
T Consensus 186 i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp 224 (352)
T PRK10422 186 VVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGP 224 (352)
T ss_pred EEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 455555433556787888999999987766677777788
No 258
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=28.28 E-value=68 Score=20.93 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=21.0
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCC
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~ 53 (86)
++-+..+++.+++ +|.+|.+|=+++..
T Consensus 12 ~~~~~~~~~~~~~--~d~ii~~GD~~~~~ 38 (155)
T cd00841 12 LELLEKALELFGD--VDLIIHAGDVLYPG 38 (155)
T ss_pred HHHHHHHHHHhcC--CCEEEECCcccccc
Confidence 3567777777655 99999999888754
No 259
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=27.84 E-value=50 Score=27.51 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCCEEEeecc
Q psy149 28 LEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GP 48 (86)
-..=++.+.+.+||+++|.|=
T Consensus 109 ~~~~l~~I~~~~PDIILLaGG 129 (463)
T TIGR01319 109 NNKDIEAIEESNLDIILFAGG 129 (463)
T ss_pred CHHHHHHHhhcCCCEEEEeCC
Confidence 445577888899999999995
No 260
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=27.82 E-value=1.1e+02 Score=21.86 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=35.1
Q ss_pred CceeEEEEeCCC-CCCCCCCCchHHHHHHHHhhCCCCEEEeecccc
Q psy149 6 RSLSMFVSAGPY-TQSDTLSYKPLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 6 ~~l~i~vAaGPf-T~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
.+-.+++-.||. ..+.++.|+=-..+++.+.+....-+|.+|=+.
T Consensus 13 ~~~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~ 58 (188)
T TIGR00162 13 NGTDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYG 58 (188)
T ss_pred CCCCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCc
Confidence 446788899998 555577788667788888999999888887654
No 261
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=27.63 E-value=56 Score=26.44 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=26.6
Q ss_pred EEEEeCCCCCCCCC-----------------CCchHHHHHHHHhhCCCCEEEeec
Q psy149 10 MFVSAGPYTQSDTL-----------------SYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 10 i~vAaGPfT~~d~l-----------------~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
.|.+|-||++.|+. +-+-..+-++++...+||++|=.|
T Consensus 60 ~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~p~~iiDdG 114 (406)
T TIGR00936 60 AWTSCNPLSTQDDVAAALAKAGIPVFAWRGETNEEYYWAIEQVLDHEPNIIIDDG 114 (406)
T ss_pred EEEccCCccccHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHhcCCCCEEEecc
Confidence 56778999988765 222333556667778999988766
No 262
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=27.57 E-value=72 Score=18.32 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=16.4
Q ss_pred CCCCCCC-CCCchHHHHHHHHhh
Q psy149 16 PYTQSDT-LSYKPLEDLIALTVQ 37 (86)
Q Consensus 16 PfT~~d~-l~y~pL~~ll~~v~~ 37 (86)
||+.... =+|. +.|||+.+..
T Consensus 2 P~C~~kkk~~Y~-~~~LlqHA~g 23 (43)
T PF03470_consen 2 PFCPGKKKQDYK-YRELLQHASG 23 (43)
T ss_pred CCCCCCCCccee-hhHHHHHHHh
Confidence 8888763 4688 9999998765
No 263
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=27.51 E-value=1.4e+02 Score=20.69 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
|.++.+++.... -+.+....+++.+...+||.+|++|.
T Consensus 32 g~~v~l~~~~~~------~~~~~~~~~~~~l~~~~vd~iI~~~~ 69 (281)
T cd06325 32 GKNVKIDYQNAQ------GDQSNLPTIARKFVADKPDLIVAIAT 69 (281)
T ss_pred CceEEEEEecCC------CCHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 446676665322 23356677888888889999999874
No 264
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=27.45 E-value=1.6e+02 Score=21.82 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCCceeE-EEEeCC---------CCCCCC--CC---Cch----HHHHHHHHhhC------CCCEEEe--------ecccc
Q psy149 4 TRRSLSM-FVSAGP---------YTQSDT--LS---YKP----LEDLIALTVQQ------EPDVLIL--------IGPLL 50 (86)
Q Consensus 4 ~~~~l~i-~vAaGP---------fT~~d~--l~---y~p----L~~ll~~v~~~------~PdvlIL--------~GPFi 50 (86)
+|..+++ +..||+ |..+.. .. +.| |.+|.+++... .||.+|+ ||.=.
T Consensus 54 gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~ 133 (213)
T PRK15401 54 GGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQ 133 (213)
T ss_pred CCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCcccccc
Confidence 3456666 566774 444432 23 333 67777777543 8898887 56666
Q ss_pred CC
Q psy149 51 DT 52 (86)
Q Consensus 51 D~ 52 (86)
|.
T Consensus 134 D~ 135 (213)
T PRK15401 134 DK 135 (213)
T ss_pred CC
Confidence 64
No 265
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=27.31 E-value=1.6e+02 Score=21.60 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=25.8
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHhh--CCCCEEEeec
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ--QEPDVLILIG 47 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~--~~PdvlIL~G 47 (86)
.+..-|++-+|+-|... ...+.++.+ .+|..||-+|
T Consensus 72 Pr~aDvllV~G~vt~~~-------~~~l~~~~e~mp~pk~VIA~G 109 (183)
T PRK06411 72 PRQADLMIVAGTLTNKM-------APALRRLYDQMPEPKWVISMG 109 (183)
T ss_pred CCceeEEEEEeCCCccc-------hHHHHHHHHHcCcCCeEEEEe
Confidence 35577999999998774 445555554 4788898774
No 266
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=27.26 E-value=85 Score=20.00 Aligned_cols=20 Identities=5% Similarity=0.190 Sum_probs=17.6
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.+.|.+||
T Consensus 90 ~~~~~I~~~a~~~~~dlIV~ 109 (146)
T cd01989 90 DVAKAIVEYVADHGITKLVM 109 (146)
T ss_pred cHHHHHHHHHHHcCCCEEEE
Confidence 57888999999999998887
No 267
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=27.16 E-value=92 Score=16.96 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=13.1
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhh--CCCCEEE
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQ--QEPDVLI 44 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~--~~PdvlI 44 (86)
.|||+.. +|.+.+++ ..++.+|
T Consensus 11 ~GP~s~~---------el~~l~~~g~i~~~tlv 34 (45)
T PF14237_consen 11 QGPFSLE---------ELRQLISSGEIDPDTLV 34 (45)
T ss_pred ECCcCHH---------HHHHHHHcCCCCCCCeE
Confidence 6898754 55555554 5555554
No 268
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=27.01 E-value=88 Score=19.33 Aligned_cols=22 Identities=5% Similarity=0.152 Sum_probs=19.1
Q ss_pred chHHHHHHHHhhCCCCEEEeec
Q psy149 26 KPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~G 47 (86)
.|-..+++++.+.+.|.||+-.
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~ 93 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGK 93 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCC
Confidence 4788999999999999999854
No 269
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases. The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged
Probab=27.00 E-value=66 Score=23.02 Aligned_cols=20 Identities=40% Similarity=0.502 Sum_probs=17.1
Q ss_pred CchHHHHHHHHhhCCCCEEE
Q psy149 25 YKPLEDLIALTVQQEPDVLI 44 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlI 44 (86)
.+=|..|++.+.+..||+++
T Consensus 52 ~~lL~~f~~~i~~~dPDvi~ 71 (193)
T cd05784 52 KSLLLALIAWFAQYDPDIII 71 (193)
T ss_pred HHHHHHHHHHHHhhCCCEEE
Confidence 34589999999999999886
No 270
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=27.00 E-value=83 Score=23.04 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.4
Q ss_pred HHHHHHHhhCCCCEEEeeccc
Q psy149 29 EDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPF 49 (86)
...+.++++.+||++++.++-
T Consensus 176 ~~~i~~l~~~~pd~v~~~~~~ 196 (333)
T cd06359 176 SAELAQIRAAKPDAVFVFLPG 196 (333)
T ss_pred HHHHHHHHhCCCCEEEEEccC
Confidence 447788889999999986544
No 271
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=26.84 E-value=1.2e+02 Score=23.28 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
-+...+.+++..+||+|++.+.--|
T Consensus 176 Df~~~l~~i~~~~pD~V~~~~~g~~ 200 (374)
T TIGR03669 176 QFSSTIQNIQKADPDFVMSMLVGAN 200 (374)
T ss_pred hHHHHHHHHHHcCCCEEEEcCcCCc
Confidence 4567788999999999998764433
No 272
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=26.65 E-value=1.7e+02 Score=21.37 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=27.8
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccc
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
....++|-+||-+. ++-+-+..|-+++.+- =.++++++|+
T Consensus 196 ~~~d~Lvi~~P~~~---ls~~e~~~l~~yl~~G-G~ll~~~d~~ 235 (271)
T PF09822_consen 196 DDADVLVIAGPKTD---LSEEELYALDQYLMNG-GKLLILLDPF 235 (271)
T ss_pred CCCCEEEEECCCCC---CCHHHHHHHHHHHHcC-CeEEEEECCc
Confidence 45688999999772 3334555555666543 3799999999
No 273
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=26.61 E-value=86 Score=24.89 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=23.1
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCCCCccccCC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNG 60 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g 60 (86)
-+.++.+.+++.+||++| -|+ +...|+++-|
T Consensus 348 D~~~l~~~i~~~~pDlli-g~~--~~~~pl~r~G 378 (427)
T PRK02842 348 DVERQLDRIRALRPDLVV-CGL--GLANPLEAEG 378 (427)
T ss_pred CHHHHHHHHHHcCCCEEE-ccC--ccCCchhhcC
Confidence 467778899999999887 444 5566777765
No 274
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included.; InterPro: IPR006133 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known. However, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold [].; GO: 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 4AHC_A 3A2F_A 2JGU_A 4AIL_C 1NOY_A 1NOZ_B 3IAY_A 1WNS_A 3K5O_A ....
Probab=26.60 E-value=55 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=17.0
Q ss_pred CCchHHHHHHHHhhCCCCEEE
Q psy149 24 SYKPLEDLIALTVQQEPDVLI 44 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlI 44 (86)
..+=|..|++.+.+..||+++
T Consensus 222 E~~lL~~f~~~i~~~dPDii~ 242 (325)
T PF03104_consen 222 EKELLEAFLDIIQEYDPDIIT 242 (325)
T ss_dssp HHHHHHHHHHHHHHHS-SEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEE
Confidence 346688999999999999987
No 275
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=26.57 E-value=54 Score=24.94 Aligned_cols=20 Identities=20% Similarity=0.569 Sum_probs=17.7
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
-|.++|++.+++.|||++-+
T Consensus 142 vP~e~fve~a~e~k~d~v~~ 161 (227)
T COG5012 142 VPVEEFVEKAKELKPDLVSM 161 (227)
T ss_pred CCHHHHHHHHHHcCCcEEec
Confidence 48999999999999998865
No 276
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=26.54 E-value=74 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=17.9
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
-|+.+.+.+.+.+||.+|+.|=..+
T Consensus 46 ~l~rl~~li~~~~~d~vIi~GDl~h 70 (225)
T TIGR00024 46 IIERALSIADKYGIEALIINGDLKH 70 (225)
T ss_pred HHHHHHHHHhhcCCCEEEEcCcccc
Confidence 3555566667788999999994443
No 277
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=26.21 E-value=81 Score=23.06 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=26.1
Q ss_pred CCCCchHHHHHHHHhhC-CCCEEEe-eccccCCC
Q psy149 22 TLSYKPLEDLIALTVQQ-EPDVLIL-IGPLLDTS 53 (86)
Q Consensus 22 ~l~y~pL~~ll~~v~~~-~PdvlIL-~GPFiD~~ 53 (86)
.-.|..+..+++.+++. .||+|++ .|=+++.+
T Consensus 32 ~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs 65 (264)
T cd07411 32 AGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGS 65 (264)
T ss_pred cCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCC
Confidence 34688999999999998 9998866 78777665
No 278
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=26.10 E-value=71 Score=22.22 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=14.4
Q ss_pred HHHHHhhCCCCEEEeecc
Q psy149 31 LIALTVQQEPDVLILIGP 48 (86)
Q Consensus 31 ll~~v~~~~PdvlIL~GP 48 (86)
|.+.+...+|.++|++|-
T Consensus 92 l~~eI~~v~P~~Iv~lG~ 109 (173)
T TIGR00758 92 LVKQIELIRPKVIICLGR 109 (173)
T ss_pred HHHHHHhcCCCEEEEECH
Confidence 345566689999999998
No 279
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=26.10 E-value=1.1e+02 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=16.9
Q ss_pred CCCchHHHHHHHHhhCCCCEEEeec
Q psy149 23 LSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-+|++ ++.++++.+||+|++.+
T Consensus 188 ~d~~~---~i~~l~~~~~d~v~~~~ 209 (342)
T cd06329 188 KDFSP---YVAKIKASGADTVITGN 209 (342)
T ss_pred CchHH---HHHHHHHcCCCEEEEcc
Confidence 45555 47788899999999876
No 280
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=25.90 E-value=79 Score=23.15 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=16.8
Q ss_pred CCchHHHHH-HHHhhCCCCEEEeecc
Q psy149 24 SYKPLEDLI-ALTVQQEPDVLILIGP 48 (86)
Q Consensus 24 ~y~pL~~ll-~~v~~~~PdvlIL~GP 48 (86)
+|+...+.+ +.+.+.+||++|.+|=
T Consensus 45 ~y~~~~~~l~~~l~~~~Pd~vih~G~ 70 (215)
T PRK13197 45 VFGKSAEVLKEAIEEVQPDAVICIGQ 70 (215)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEEecc
Confidence 454444444 4445679999999994
No 281
>PF05125 Phage_cap_P2: Phage major capsid protein, P2 family ; InterPro: IPR006441 This entry is represented by Bacteriophage P2, GpN. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family represents the major capsid protein component of the heads (capsids) of bacteriophage P2 and related phage including prophage. These sequences represent one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. ; GO: 0019028 viral capsid
Probab=25.81 E-value=19 Score=28.72 Aligned_cols=37 Identities=30% Similarity=0.581 Sum_probs=23.1
Q ss_pred CCCchHHHHHHHH--------hhCCCCEEEeecc--ccCCCCccccC
Q psy149 23 LSYKPLEDLIALT--------VQQEPDVLILIGP--LLDTSHPLLLN 59 (86)
Q Consensus 23 l~y~pL~~ll~~v--------~~~~PdvlIL~GP--FiD~~h~~i~~ 59 (86)
=+|.-|+.|+.-+ -++.||+|+++|= .-|...|++..
T Consensus 196 gdY~nLDalV~D~~~~lId~~~~~d~dLVvivGrdLladk~~~l~n~ 242 (333)
T PF05125_consen 196 GDYKNLDALVFDAVNSLIDPWHRDDPDLVVIVGRDLLADKYFPLINA 242 (333)
T ss_pred CccCCHHHHHHHHHHccCCHHHcCCCCEEEEEChhHHhhhhhhhhcc
Confidence 3555666555433 3479999999994 33555566554
No 282
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=25.81 E-value=80 Score=22.60 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.3
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++.+.+++.+||++++.|
T Consensus 69 ~~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 69 QAIIEELRAHEVDLVVLAG 87 (190)
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 3678888899999999987
No 283
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=25.77 E-value=70 Score=19.41 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=9.9
Q ss_pred HHhhCCCCEEEeec
Q psy149 34 LTVQQEPDVLILIG 47 (86)
Q Consensus 34 ~v~~~~PdvlIL~G 47 (86)
.+.+.+||++|..|
T Consensus 56 ~l~~l~pDlvi~~~ 69 (148)
T cd00636 56 KIAALKPDLIIANG 69 (148)
T ss_pred HHhccCCCEEEEec
Confidence 33444999998876
No 284
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=25.62 E-value=87 Score=23.83 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCCEEEeeccccC
Q psy149 30 DLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPFiD 51 (86)
.+.+.+++.+||++|-.-||..
T Consensus 91 ~l~~~i~~~~pDvIi~thp~~~ 112 (382)
T PLN02605 91 EVAKGLMKYKPDIIVSVHPLMQ 112 (382)
T ss_pred HHHHHHHhcCcCEEEEeCcCcc
Confidence 3456777899999999888744
No 285
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=25.50 E-value=95 Score=23.78 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCCc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h~ 55 (86)
...|.+.+++.+||+||-..|.--..||
T Consensus 110 ~~~L~~iIr~~~PdvVvT~d~~GgygHp 137 (283)
T TIGR03446 110 AEPLVRVIREFRPHVITTYDENGGYPHP 137 (283)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCCCCCh
Confidence 3556677778999999987665333343
No 286
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=25.43 E-value=95 Score=20.61 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=17.3
Q ss_pred hHHHHHHHHhhCCCCE-EEeeccccC
Q psy149 27 PLEDLIALTVQQEPDV-LILIGPLLD 51 (86)
Q Consensus 27 pL~~ll~~v~~~~Pdv-lIL~GPFiD 51 (86)
-+..|++++++..|++ ++++.|++.
T Consensus 82 ~~~~li~~i~~~~p~~~i~~~~~~~~ 107 (169)
T cd01831 82 AYVEFIEELRKRYPDAPIVLMLGPML 107 (169)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCcc
Confidence 6888899999988884 334444443
No 287
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=25.36 E-value=1.8e+02 Score=20.77 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=24.0
Q ss_pred CCCceeEEEEeCCCCCCCC-----------CCCchHHHHHHHHhhCCCCEEEee
Q psy149 4 TRRSLSMFVSAGPYTQSDT-----------LSYKPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 4 ~~~~l~i~vAaGPfT~~d~-----------l~y~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+|..+-++-.+.+.+.... .+.+-+.+.++++++. +|++|++
T Consensus 129 ~g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~vIv~ 181 (239)
T cd07381 129 NGIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-ADIVIVS 181 (239)
T ss_pred CCEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-CCEEEEE
Confidence 4555666666666654321 1123455556666554 9998885
No 288
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=25.28 E-value=85 Score=22.84 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
-+...+++++..+||++|+.+.--|
T Consensus 205 d~~~~l~~l~~~~~~vvv~~~~~~~ 229 (348)
T cd06350 205 DIKRILKKLKSSTARVIVVFGDEDD 229 (348)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCcHH
Confidence 4678889999999999999886533
No 289
>PLN02747 N-carbamolyputrescine amidase
Probab=25.27 E-value=92 Score=22.91 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=26.3
Q ss_pred CCcCCCceeEEEEeCCCCCCCC--CCCchHHHHHHHHhhCCCCEEEe
Q psy149 1 MTLTRRSLSMFVSAGPYTQSDT--LSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 1 ~~l~~~~l~i~vAaGPfT~~d~--l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
|+|+. .++ ||+-.+....+ -+.+...++++++.+..+|++++
T Consensus 1 ~~~~~-~~~--va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvf 44 (296)
T PLN02747 1 MGMGR-KVV--VAALQFACSDDRAANVDKAERLVREAHAKGANIILI 44 (296)
T ss_pred CCCCc-ceE--EEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEc
Confidence 45553 454 44444433222 33457788888888899999985
No 290
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative
Probab=25.20 E-value=77 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=17.1
Q ss_pred CchHHHHHHHHhhCCCCEEEe
Q psy149 25 YKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL 45 (86)
.+-|..|++.+.+..||+++=
T Consensus 64 ~~lL~~f~~~i~~~dpdiivg 84 (199)
T cd05160 64 KELLKRFFDIIREYDPDILTG 84 (199)
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 345889999999999999763
No 291
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=25.12 E-value=77 Score=22.24 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=16.8
Q ss_pred CchHHHHHHHHhhCCCCEEE
Q psy149 25 YKPLEDLIALTVQQEPDVLI 44 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlI 44 (86)
.+=|..|++.+.+..||+++
T Consensus 57 ~~lL~~F~~~i~~~dpdiiv 76 (195)
T cd05780 57 KEMIKRFIEIVKEKDPDVIY 76 (195)
T ss_pred HHHHHHHHHHHHHcCCCEEE
Confidence 35689999999999999876
No 292
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.98 E-value=2.1e+02 Score=18.78 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=17.1
Q ss_pred CchHHHHHHHHhhCCCC-EEEeeccc
Q psy149 25 YKPLEDLIALTVQQEPD-VLILIGPL 49 (86)
Q Consensus 25 y~pL~~ll~~v~~~~Pd-vlIL~GPF 49 (86)
.+-+..+++.+++..|. -+|++||.
T Consensus 80 ~~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 80 RQQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 35678888888885444 46667875
No 293
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=24.97 E-value=96 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=17.4
Q ss_pred CCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 23 LSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.+|++ .++++++.+||++++.+.
T Consensus 173 ~d~~~---~i~~l~~~~~d~i~~~~~ 195 (333)
T cd06332 173 LDFSA---ELAQIRAAKPDAVFVFLP 195 (333)
T ss_pred cchHH---HHHHHHhcCCCEEEEecc
Confidence 34554 677888899999998765
No 294
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=24.78 E-value=2.3e+02 Score=19.32 Aligned_cols=40 Identities=13% Similarity=0.356 Sum_probs=33.8
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
..-+.++|-+|- .+-..+|-+.|-+.+..++|++.+..+.
T Consensus 40 ~~~~~I~~q~P~-------~~t~~~FW~mv~~~~~~~Iv~L~~~~e~ 79 (235)
T PF00102_consen 40 NGKKFIVTQAPM-------PDTIEDFWQMVWEQKVQIIVMLCSFDES 79 (235)
T ss_dssp STEEEEEEES-S-------GGGHHHHHHHHHHTTBSEEEEESBSEET
T ss_pred chhhheeecccc-------cccccceehheeeccccceecccccccc
Confidence 467889999993 3578999999999999999999999885
No 295
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=24.72 E-value=86 Score=23.59 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
-+...++++++.+|+++|+.|..-++
T Consensus 201 d~~~~l~~ik~~~~~vIvl~~~~~~~ 226 (377)
T cd06379 201 NVTSLLQEAKELTSRVILLSASEDDA 226 (377)
T ss_pred hHHHHHHHHhhcCCeEEEEEcCHHHH
Confidence 45677888999999999998875443
No 296
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=24.58 E-value=1.4e+02 Score=20.95 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=25.4
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHhh--CCCCEEEeec
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ--QEPDVLILIG 47 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~--~~PdvlIL~G 47 (86)
.+..-|++-+||-|... .+-+.++.+ .+|..||-+|
T Consensus 55 Pr~aDvllVtG~vt~~~-------~~~l~~~~e~~p~pk~VIA~G 92 (145)
T TIGR01957 55 PRQADVMIVAGTVTKKM-------APALRRLYDQMPEPKWVISMG 92 (145)
T ss_pred CCcceEEEEecCCcHHH-------HHHHHHHHHhccCCceEEEec
Confidence 35577999999999873 444555554 4788888775
No 297
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=24.58 E-value=1e+02 Score=23.03 Aligned_cols=34 Identities=6% Similarity=0.152 Sum_probs=21.6
Q ss_pred EEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 10 i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
|++||||++.+. ++++.+.......+++=+=+.+
T Consensus 15 v~~aag~~~~~~--------~~~~~~~~~g~g~v~~kti~~~ 48 (301)
T PRK07259 15 VMPASGTFGFGG--------EYARFYDLNGLGAIVTKSTTLE 48 (301)
T ss_pred cEECCcCCCCCH--------HHHHHhhhcCCcEEEeCCCCCC
Confidence 699999998662 5555555555666655443333
No 298
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=24.28 E-value=1.8e+02 Score=22.30 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=21.8
Q ss_pred HHHHHHHhh--CCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhh
Q psy149 29 EDLIALTVQ--QEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIV 78 (86)
Q Consensus 29 ~~ll~~v~~--~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~ 78 (86)
.++.+.++. .++|+||+.| -+.-|.||+-.+.+++.+
T Consensus 48 ~~I~~~l~~a~~r~D~vI~tG-------------GLGPT~DDiT~e~vAka~ 86 (255)
T COG1058 48 DRIVEALREASERADVVITTG-------------GLGPTHDDLTAEAVAKAL 86 (255)
T ss_pred HHHHHHHHHHHhCCCEEEECC-------------CcCCCccHhHHHHHHHHh
Confidence 444444443 4499999965 355566666555555433
No 299
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.20 E-value=95 Score=21.26 Aligned_cols=20 Identities=20% Similarity=0.625 Sum_probs=17.7
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|..++++.+.+++||++-|
T Consensus 37 v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 37 SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEE
Confidence 57899999999999998877
No 300
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=24.16 E-value=1e+02 Score=22.59 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=9.3
Q ss_pred EEEEeCCCCCC
Q psy149 10 MFVSAGPYTQS 20 (86)
Q Consensus 10 i~vAaGPfT~~ 20 (86)
|++||||.|.+
T Consensus 12 v~~aag~~~~~ 22 (289)
T cd02810 12 FGVAAGPLLKT 22 (289)
T ss_pred CEeCCCCCCCC
Confidence 79999999754
No 301
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=24.16 E-value=40 Score=22.47 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=16.5
Q ss_pred HHHhhCCCCEEEeeccccCCC
Q psy149 33 ALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 33 ~~v~~~~PdvlIL~GPFiD~~ 53 (86)
+.+++.+||+||+.|=+.+..
T Consensus 20 ~~~~~~~~d~li~~GDi~~~~ 40 (166)
T cd07404 20 NFPIAPDADILVLAGDIGYLT 40 (166)
T ss_pred ccCCCCCCCEEEECCCCCCCc
Confidence 455678999999999887654
No 302
>PF02807 ATP-gua_PtransN: ATP:guanido phosphotransferase, N-terminal domain; InterPro: IPR022413 This entry represents the N-terminal domain of ATP:guanido phosphotransferase, which has an all-alpha fold consisting of an irregular array of 6 short helices []. ATP:guanido phosphotransferases are a family of structurally and functionally related enzymes [, ] that reversibly catalyse the transfer of phosphate between ATP and various phosphogens. The enzymes belonging to this family include: Glycocyamine kinase (2.7.3.1 from EC), which catalyses the transfer of phosphate from ATP to guanidoacetate. Arginine kinase (2.7.3.3 from EC), which catalyses the transfer of phosphate from ATP to arginine. Taurocyamine kinase (2.7.3.4 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to taurocyamine. Lombricine kinase (2.7.3.5 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to lombricine. Smc74, a cercaria-specific enzyme from Schistosoma mansoni []. Creatine kinase (2.7.3.2 from EC) (CK) [, ], which catalyses the reversible transfer of high energy phosphate from ATP to creatine, generating phosphocreatine and ADP. Creatine kinase plays an important role in energy metabolism of vertebrates. There are at least four different, but very closely related, forms of CK. Two isozymes, M (muscle) and B (brain), are cytosolic, while the other two are mitochondrial. In sea urchins there is a flagellar isozyme, which consists of the triplication of a CK-domain. A cysteine residue is implicated in the catalytic activity of these enzymes and the region around this active site residue is highly conserved.; GO: 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 1U6R_B 2CRK_A 2J1Q_A 1QH4_C 1QK1_F 2GL6_F 3L2F_M 3L2D_D 3L2G_B 3L2E_B ....
Probab=24.12 E-value=91 Score=19.62 Aligned_cols=26 Identities=15% Similarity=0.474 Sum_probs=14.8
Q ss_pred CccccCCCcCCCHHHHHHHHHHHhhccc
Q psy149 54 HPLLLNGSLAETFEDFYVKLIDSIVQPL 81 (86)
Q Consensus 54 h~~i~~g~~~~t~eelF~~~i~~i~~~~ 81 (86)
.--+..|+ .++|+ +|+.+..+|++.-
T Consensus 47 ~vG~~AgD-~esY~-vF~~lfdpvI~dy 72 (76)
T PF02807_consen 47 GVGIYAGD-EESYD-VFKELFDPVIEDY 72 (76)
T ss_dssp BS----SS-TTHHH-HTHHHHHHHHHHH
T ss_pred ccceeecC-hhHHH-HHHHHHHHHHHHH
Confidence 33345554 66665 7888888887753
No 303
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=24.03 E-value=1.7e+02 Score=19.34 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=9.6
Q ss_pred HHHHHHHHhhCCCCEEE
Q psy149 28 LEDLIALTVQQEPDVLI 44 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlI 44 (86)
..+.++.++..+|.++|
T Consensus 144 ~~~a~~~~~~l~pk~vi 160 (163)
T PF13483_consen 144 PEEAAELAERLKPKLVI 160 (163)
T ss_dssp HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 45556666666666665
No 304
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=23.97 E-value=1.5e+02 Score=19.11 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=28.0
Q ss_pred eeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecccc
Q psy149 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 8 l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
+-+++-++||.+. -.|+.|+-.+....-.+.=.|+++|-=+
T Consensus 2 il~i~~~~Pyg~~--~~~e~l~~al~~aa~~~eV~vff~~DGV 42 (116)
T TIGR03010 2 LAFVFRQAPHGTA--SGREGLDALLAASAFDEDIGVFFIDDGV 42 (116)
T ss_pred EEEEEcCCCCCcc--hHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 4578899999654 5678887777655544443577777544
No 305
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=23.83 E-value=2.4e+02 Score=19.74 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=23.1
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhh-CCCCEEEee
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ-QEPDVLILI 46 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~-~~PdvlIL~ 46 (86)
.=.++|++|+ .+++..|.-=..|=...-- +=||.+|++
T Consensus 28 ~dal~i~~G~--~~e~~~Y~Ks~aLq~WLlGYEfpdTiiv~ 66 (163)
T PF14826_consen 28 ADALVIAVGK--ADEDNPYSKSTALQTWLLGYEFPDTIIVF 66 (163)
T ss_dssp -SEEEEEE-S----TTSTT-HHHHHHHHHHSS--SSEEEEE
T ss_pred CCEEEEEeCC--cccCccchhHHHHHHHHhcccHhhhhhhh
Confidence 3468999999 7888888877766666655 778877754
No 306
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=23.77 E-value=1.4e+02 Score=20.36 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=18.6
Q ss_pred chHHHHHHHHhhCCCCEEEeecc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.....+++.+++.+++++|+++.
T Consensus 182 ~~~~~~l~~l~~~~~~viv~~~~ 204 (298)
T cd06269 182 EDIRRLLKELKSSTARVIVVFSS 204 (298)
T ss_pred HHHHHHHHHHHhcCCcEEEEEec
Confidence 45778888888888899988765
No 307
>KOG2774|consensus
Probab=23.75 E-value=29 Score=27.55 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=24.9
Q ss_pred EEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEee
Q psy149 11 FVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 11 ~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+.-+|||-..|-|||+-|.+++ .+.+-|-||=+
T Consensus 85 V~~~GPyIy~DILD~K~L~eIV---Vn~RIdWL~Hf 117 (366)
T KOG2774|consen 85 VTDVGPYIYLDILDQKSLEEIV---VNKRIDWLVHF 117 (366)
T ss_pred hcccCCchhhhhhccccHHHhh---cccccceeeeH
Confidence 4568999999999999998764 44566666543
No 308
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.67 E-value=91 Score=22.78 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCCCCEEEeecccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFi 50 (86)
+...+.+++..+||++++.|-.-
T Consensus 179 ~~~~v~~l~~~~~d~v~~~~~~~ 201 (340)
T cd06349 179 FRPTITRLRDANPDAIILISYYN 201 (340)
T ss_pred HHHHHHHHHhcCCCEEEEccccc
Confidence 34578889999999999988543
No 309
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=23.59 E-value=1.9e+02 Score=21.80 Aligned_cols=42 Identities=10% Similarity=0.246 Sum_probs=26.0
Q ss_pred CCCceeEEEEeCCCCCCC-CCCCchHHHHHHHHhhCCCCEEEee
Q psy149 4 TRRSLSMFVSAGPYTQSD-TLSYKPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 4 ~~~~l~i~vAaGPfT~~d-~l~y~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+|..+-|+=..|++.... +--|+-+++.++++++ ++|++|+.
T Consensus 105 ~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~-~~D~IIV~ 147 (255)
T cd07382 105 NGKKIAVINLMGRVFMPPLDNPFRAADELLEELKE-EADIIFVD 147 (255)
T ss_pred CCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhc-CCCEEEEE
Confidence 455566666778876532 1124555666666666 79988874
No 310
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=23.56 E-value=1.1e+02 Score=23.62 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 22 TLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 22 ~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
|-.++-+.+.++.+++.++|++|=+|
T Consensus 58 ~p~~~~v~~~~~~~~~~~~D~IIaiG 83 (374)
T cd08183 58 EPSVELVDAAVAEARNAGCDVVIAIG 83 (374)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEec
Confidence 55567788888888889999999887
No 311
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=23.45 E-value=73 Score=15.00 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=8.9
Q ss_pred eeEEEEeCCCCCC
Q psy149 8 LSMFVSAGPYTQS 20 (86)
Q Consensus 8 l~i~vAaGPfT~~ 20 (86)
-.|.|..|||.-.
T Consensus 6 ~~V~I~~G~~~g~ 18 (28)
T smart00739 6 DTVRVIAGPFKGK 18 (28)
T ss_pred CEEEEeECCCCCc
Confidence 3577778888643
No 312
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=23.42 E-value=1.7e+02 Score=21.80 Aligned_cols=43 Identities=7% Similarity=0.054 Sum_probs=24.5
Q ss_pred CCCceeEEEEeCCCCCC-------CCCCCchHH----HHHHHHhhCCCCEEEee
Q psy149 4 TRRSLSMFVSAGPYTQS-------DTLSYKPLE----DLIALTVQQEPDVLILI 46 (86)
Q Consensus 4 ~~~~l~i~vAaGPfT~~-------d~l~y~pL~----~ll~~v~~~~PdvlIL~ 46 (86)
+|..+-|+=.+.|.+.. ..+.|..-. ..++++++.++|++|++
T Consensus 145 ~G~kIgviGl~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~~~~D~IIvL 198 (288)
T cd07412 145 GGVKVGFIGAVTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVL 198 (288)
T ss_pred CCEEEEEEeecCCCccceeccccccCceEcCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 33344445555666543 245554433 34455566789999986
No 313
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=23.22 E-value=41 Score=21.62 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=42.3
Q ss_pred CCCCCCCCCchHHHHHHHHhhCCC--CEEEeeccccCCCC-ccccC--CC-------c---------CCCHHHHHHHHHH
Q psy149 17 YTQSDTLSYKPLEDLIALTVQQEP--DVLILIGPLLDTSH-PLLLN--GS-------L---------AETFEDFYVKLID 75 (86)
Q Consensus 17 fT~~d~l~y~pL~~ll~~v~~~~P--dvlIL~GPFiD~~h-~~i~~--g~-------~---------~~t~eelF~~~i~ 75 (86)
|..++.-+|+-+..+++.+.+..+ =.+|++|=-.|... ..|.. +. . .....++|..++.
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666677888899999988666 37888898888665 22210 00 1 5677888888877
Q ss_pred Hhh
Q psy149 76 SIV 78 (86)
Q Consensus 76 ~i~ 78 (86)
.|+
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 314
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=22.98 E-value=50 Score=20.61 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.0
Q ss_pred HhhCCCCEEEeeccccCCCCcccc
Q psy149 35 TVQQEPDVLILIGPLLDTSHPLLL 58 (86)
Q Consensus 35 v~~~~PdvlIL~GPFiD~~h~~i~ 58 (86)
|.+..|++.=-+|||+..+-....
T Consensus 14 I~T~~P~ctYyFGPF~s~~eA~~~ 37 (68)
T PF08846_consen 14 IETQNPNCTYYFGPFDSREEAEAA 37 (68)
T ss_pred EEcCCCCEEEEeCCcCCHHHHHHH
Confidence 567889999999999987764433
No 315
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=22.96 E-value=2.4e+02 Score=21.92 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=40.7
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCC--HHHHHHH
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAET--FEDFYVK 72 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t--~eelF~~ 72 (86)
.--+|=++.---+|+-|.++++.+.+.. .+||-||.-|-.-+.+++..+ |++++++
T Consensus 141 e~~agegs~~g~~F~~L~eii~~~~~~~-----~igvCiDtcH~~Aagy~~~~~~~~~~vl~~ 198 (280)
T COG0648 141 ENTAGEGSGKGTQFGELAEIIDLIEEKE-----RIGVCIDTCHAFAAGYDIITEEDFEKVLNE 198 (280)
T ss_pred EEeccccCccccchhhHHHHHHhhcccC-----ceEEEEEchhhhhccCCcCcHHHHHHHHHH
Confidence 4445556666788999999999998754 378899999988776666443 5555543
No 316
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=22.92 E-value=91 Score=23.36 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.3
Q ss_pred HHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 29 EDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
.+|.+.+.+++.++| ||++||.
T Consensus 55 ~~l~~~l~~~~i~~V------IDATHPf 76 (248)
T PRK08057 55 EGLAAYLREEGIDLV------IDATHPY 76 (248)
T ss_pred HHHHHHHHHCCCCEE------EECCCcc
Confidence 567777789999997 5999986
No 317
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=22.84 E-value=55 Score=20.88 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhh-CCCCEEEeeccccCCCC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ-QEPDVLILIGPLLDTSH 54 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~-~~PdvlIL~GPFiD~~h 54 (86)
.+-|-|++| .++.++-..+.++.+++ ..+++-|.+|=-+|.+-
T Consensus 38 ~vLvni~~~-----~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id~~l 81 (95)
T PF12327_consen 38 GVLVNITGG-----PDLSLSEVNEAMEIIREKADPDANIIWGASIDEEL 81 (95)
T ss_dssp EEEEEEEE------TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-TTG
T ss_pred eEEEEEEcC-----CCCCHHHHHHHHHHHHHHhhcCceEEEEEEECCCC
Confidence 444556665 46888899999999987 68999999998888653
No 318
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=22.75 E-value=94 Score=23.68 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=17.2
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
.+...|.++++ +|+++|++|+.
T Consensus 191 d~~~~l~~ik~-~~~vIi~~~~~ 212 (399)
T cd06384 191 DIIEIIQFIKQ-NGRIVYICGPL 212 (399)
T ss_pred hHHHHHHHHhh-cccEEEEeCCc
Confidence 45677778876 89999988874
No 319
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.73 E-value=1e+02 Score=22.61 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=19.3
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+...+.++++.+||++|+.+.-=|.
T Consensus 181 ~~~~v~~i~~~~~d~vi~~~~~~~~ 205 (344)
T cd06348 181 FQAQITAVLNSKPDLIVISALAADG 205 (344)
T ss_pred HHHHHHHHHhcCCCEEEECCcchhH
Confidence 4566889999999999998754333
No 320
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=22.63 E-value=2.5e+02 Score=20.26 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=18.7
Q ss_pred HHHHHHHhh--CCCCEEEeeccccCC
Q psy149 29 EDLIALTVQ--QEPDVLILIGPLLDT 52 (86)
Q Consensus 29 ~~ll~~v~~--~~PdvlIL~GPFiD~ 52 (86)
.+.++.+.+ .+||.+|+.|=+++.
T Consensus 21 ~~~~~~l~~~~~~~d~vl~~GDl~~~ 46 (294)
T cd00839 21 TNTLDHLEKELGNYDAILHVGDLAYA 46 (294)
T ss_pred HHHHHHHHhccCCccEEEEcCchhhh
Confidence 566777766 899999999977644
No 321
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=22.45 E-value=1e+02 Score=22.45 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=19.3
Q ss_pred HHHHHHHHhhCCCCEEEeeccccC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+...++++++.+||++|+.+.--|
T Consensus 185 ~~~~v~~l~~~~~d~i~~~~~~~~ 208 (345)
T cd06338 185 LSPLISKAKAAGPDAVVVAGHFPD 208 (345)
T ss_pred hHHHHHHHHhcCCCEEEECCcchh
Confidence 556888899999999999886544
No 322
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=22.43 E-value=2e+02 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=23.9
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQ 38 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~ 38 (86)
..++++.++|+..+-+. .|+.++.+.+++.
T Consensus 177 ~~~~v~~e~~~~~~G~~--~~l~~i~~l~~~~ 206 (402)
T TIGR01821 177 RPKIIAFESVYSMDGDI--APIEEICDLADKY 206 (402)
T ss_pred CCeEEEEcCCCCCCCCc--cCHHHHHHHHHHc
Confidence 46789999999887544 5799999888775
No 323
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=22.43 E-value=94 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
-+.+..+.+++.+||+||-.|.|
T Consensus 81 ~~~~~~~~l~~~~pDlVi~d~~~ 103 (321)
T TIGR00661 81 AIRREINIIREYNPDLIISDFEY 103 (321)
T ss_pred HHHHHHHHHHhcCCCEEEECCch
Confidence 44455677788999999998887
No 324
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=22.42 E-value=80 Score=20.14 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCCchHHHHHHHHhhCCCCEEEeec--cccC
Q psy149 23 LSYKPLEDLIALTVQQEPDVLILIG--PLLD 51 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlIL~G--PFiD 51 (86)
++-+-+.++++.+.+.+...+.+.| |++.
T Consensus 36 ~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~ 66 (139)
T PF13353_consen 36 LSEEIIEEIIEELKNYGIKGIVLTGGEPLLH 66 (139)
T ss_dssp C-HHHHHHHCHHHCCCCCCEEEEECSTGGGH
T ss_pred ccchhhhhhhhHHhcCCceEEEEcCCCeeee
Confidence 3345667777888788889999999 9993
No 325
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.36 E-value=1e+02 Score=22.78 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=23.4
Q ss_pred EeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 13 SAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 13 AaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+...|..+ .-+ +...++++++.+||++|+.|.--|
T Consensus 171 ~~~~~~~~-~~d---~s~~i~~i~~~~~d~v~~~~~~~~ 205 (347)
T cd06335 171 AVEWFNWG-DKD---MTAQLLRAKAAGADAIIIVGNGPE 205 (347)
T ss_pred EEeeecCC-Ccc---HHHHHHHHHhCCCCEEEEEecChH
Confidence 44555433 333 446788888999999999875433
No 326
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=22.29 E-value=1.1e+02 Score=22.87 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=18.2
Q ss_pred HHHHHHHHhhCCCCEEEeeccccC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+...+++++..+||++++.+.--|
T Consensus 177 ~~~~v~~l~~~~pd~v~~~~~~~~ 200 (348)
T cd06355 177 FQSIINKIKAAKPDVVVSTVNGDS 200 (348)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCc
Confidence 456778999999999998765433
No 327
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique
Probab=22.28 E-value=90 Score=22.59 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=18.2
Q ss_pred CCCchHHHHHHHHhhCCCCEEE
Q psy149 23 LSYKPLEDLIALTVQQEPDVLI 44 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlI 44 (86)
-..+=|.+|++.+.+..||+++
T Consensus 72 ~E~~lL~~f~~~i~~~~Pd~i~ 93 (204)
T cd05779 72 DEKALLQRFFEHIREVKPHIIV 93 (204)
T ss_pred CHHHHHHHHHHHHHHhCCCEEE
Confidence 3456788999999999999976
No 328
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=22.27 E-value=92 Score=22.53 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=15.6
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
+.++++.+++.+||+||-=..+
T Consensus 83 ~~~~~~~l~~~~pDlVIsD~~~ 104 (318)
T PF13528_consen 83 IRREIRWLREFRPDLVISDFYP 104 (318)
T ss_pred HHHHHHHHHhcCCCEEEEcChH
Confidence 3455666788999999975543
No 329
>PRK11756 exonuclease III; Provisional
Probab=22.26 E-value=1e+02 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.1
Q ss_pred hHHHHHHHHhhCCCCEEEeec
Q psy149 27 PLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~G 47 (86)
.+..+.+.+++.+|||+.|--
T Consensus 14 ~~~~i~~~i~~~~pDIi~LQE 34 (268)
T PRK11756 14 RPHQLEAIIEKHQPDVIGLQE 34 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEEe
Confidence 456788888999999999853
No 330
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=22.22 E-value=1.2e+02 Score=21.73 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=18.7
Q ss_pred chHHHHHHHHhhCCCCEEEeeccc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
.-+..+++++++.+||++++.+.-
T Consensus 177 ~d~~~~~~~l~~~~~d~v~~~~~~ 200 (343)
T PF13458_consen 177 TDFSALVQQLKSAGPDVVVLAGDP 200 (343)
T ss_dssp SHHHHHHHHHHHTTTSEEEEESTH
T ss_pred ccchHHHHHHhhcCCCEEEEeccc
Confidence 456678888999999998887643
No 331
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.13 E-value=1.1e+02 Score=23.89 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCCCCccccCCC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGS 61 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~ 61 (86)
-+.++.+.+++.+||++|= | .-..+|+++.|-
T Consensus 333 d~~~l~~~i~~~~pDlli~-~--~~~a~pl~r~G~ 364 (396)
T cd01979 333 DNYRQLDRIRELRPDLVVT-G--LGLANPLEARGI 364 (396)
T ss_pred CHHHHHHHHHhcCCCEEEe-c--ccccCcHHhCCC
Confidence 5678888899999999885 6 445578888774
No 332
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=22.07 E-value=66 Score=19.70 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=15.9
Q ss_pred HHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 29 EDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
.++.+.....+.|++|.--||....+
T Consensus 60 ~~~~~~~~~~~~D~Iv~npP~~~~~~ 85 (117)
T PF13659_consen 60 RDLPEPLPDGKFDLIVTNPPYGPRSG 85 (117)
T ss_dssp HHHHHTCTTT-EEEEEE--STTSBTT
T ss_pred hhchhhccCceeEEEEECCCCccccc
Confidence 34444456688999999999986643
No 333
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.07 E-value=1.1e+02 Score=22.85 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCCc--------cccCCCc----CCCHHHHHHHHHHH
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSHP--------LLLNGSL----AETFEDFYVKLIDS 76 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~--------~i~~g~~----~~t~eelF~~~i~~ 76 (86)
+..||.++++.|...+.+|-.|+.|=.|..+= .+++.++ ...||....+++.+
T Consensus 23 s~~pl~~~v~~I~Gd~v~V~~Lip~g~dPH~ye~~p~d~~~l~~Adlvv~~G~~~E~wl~~~~~~ 87 (287)
T cd01137 23 TFSILADIARNIAGDRVNVTSIVPPGADPHEYEPTPSDIKKLSKADLILYNGLNLEPWLERLVKN 87 (287)
T ss_pred EChHHHHHHHHHcCCeeEEEEecCCCCCccCCCCCHHHHHHHHhCCEEEEcCCCcHHHHHHHHHh
Confidence 46799999999999999999999999997651 1344443 34566654555553
No 334
>PRK11573 hypothetical protein; Provisional
Probab=22.03 E-value=1.4e+02 Score=23.82 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=35.9
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhcc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQP 80 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~~ 80 (86)
.++.++++..++.+-|..|.+.-|=.. .| -.|+||++++++..|-+.
T Consensus 271 ~~l~~lL~~~~~~~~~~AiVvDEyG~~------~G--iVTleDilEeivGei~de 317 (413)
T PRK11573 271 TPLSTQLVKFQRNKKKVGLVVDEYGDI------QG--LVTVEDILEEIVGDFTTS 317 (413)
T ss_pred CcHHHHHHHHHhcCCeEEEEEecCCCe------EE--EeeHHHHHHHHhCCCCcc
Confidence 489999999999999999887433211 12 579999999999877554
No 335
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=21.94 E-value=1.1e+02 Score=24.57 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=20.0
Q ss_pred EEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 10 i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+|+||||+|.. .+.++++.+...-.+++=.=|.|
T Consensus 24 ~i~ASgp~t~~--------~e~~~~~~~~g~GAVV~KTi~~~ 57 (385)
T PLN02495 24 FVIGSGPPGTN--------YTVMKRAFDEGWGGVIAKTVSLD 57 (385)
T ss_pred cEeCCccCCCC--------HHHHHHHHhcCCeEEEeccccCC
Confidence 79999999876 33444444445555554333333
No 336
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=21.90 E-value=1e+02 Score=24.22 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
|.+.+|..|+.-+|.|++++-+=.|-
T Consensus 223 ~~~~~L~~ir~L~P~vvv~~E~ea~~ 248 (374)
T PF03514_consen 223 PRDAFLRVIRSLNPKVVVLVEQEADH 248 (374)
T ss_pred hHHHHHHHHHhcCCCEEEEEeecCCC
Confidence 88999999999999999998775443
No 337
>PTZ00198 60S ribosomal protein L22; Provisional
Probab=21.80 E-value=37 Score=23.56 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=16.8
Q ss_pred ccCCCCccccCCCc-CCCHHHHHHHHH
Q psy149 49 LLDTSHPLLLNGSL-AETFEDFYVKLI 74 (86)
Q Consensus 49 FiD~~h~~i~~g~~-~~t~eelF~~~i 74 (86)
.||++||. .+|-+ ..+||.+++..|
T Consensus 22 ~IDCt~Pv-eD~I~d~a~fekfL~erI 47 (122)
T PTZ00198 22 KIDCTIPA-EDGIIDLSGFEQFLQDRI 47 (122)
T ss_pred EEEcCCcc-cCCcccHHHHHHHHHHhE
Confidence 47999994 66655 346777776554
No 338
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=21.77 E-value=2.7e+02 Score=19.21 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.6
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccC
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+.-.+.++.+.+.++|.+|+.++..+
T Consensus 42 ~~~~~~i~~~~~~~vdgii~~~~~~~ 67 (268)
T cd06270 42 EKEREAIEFLLERRCDALILHSKALS 67 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 34457788888889999999987544
No 339
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.68 E-value=1.8e+02 Score=21.59 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=38.3
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCCC--------ccccCCCc----CCCHHHHHHHHHHHh
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTSH--------PLLLNGSL----AETFEDFYVKLIDSI 77 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h--------~~i~~g~~----~~t~eelF~~~i~~i 77 (86)
..||.+|++.|...+.+|-.|+.|=.|..+ ..|++.++ ...||....+++.+.
T Consensus 8 ~~pl~~iv~~I~gd~v~V~~li~~g~dpH~yep~p~d~~~l~~Adliv~~G~~~E~w~~k~~~~~ 72 (276)
T cd01016 8 TGMIADAVENIGGDHVEVTGLMGPGVDPHLYKATAGDVEKLQNADVVFYNGLHLEGKMSDVLSKL 72 (276)
T ss_pred ChHHHHHHHHHcCCeEEEEEeeCCCCCcccCCCCHHHHHHHHhCCEEEEcCcChHHHHHHHHHHh
Confidence 469999999999999999999998888755 11444443 445776656666553
No 340
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=21.67 E-value=99 Score=23.61 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.4
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||+++|.|
T Consensus 150 ~~~~~~l~~~~~Dlivlag 168 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAK 168 (280)
T ss_pred HHHHHHHHHhCCCEEEEeC
Confidence 4678888899999999987
No 341
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.39 E-value=1.1e+02 Score=22.93 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCCCEEEeeccccC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+...++++++.+||++++.+--=|
T Consensus 192 ~~~~v~~ik~a~pD~v~~~~~~~~ 215 (357)
T cd06337 192 FSSQINAFKREGVDIVTGFAIPPD 215 (357)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccH
Confidence 456788899999999987764433
No 342
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=21.34 E-value=97 Score=22.93 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
-..++++.+++.+||++|+=+.-+|.
T Consensus 68 d~~~~~~~l~~~~~d~vV~D~y~~~~ 93 (279)
T TIGR03590 68 DALELINLLEEEKFDILIVDHYGLDA 93 (279)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCCCCH
Confidence 35578889999999999997775554
No 343
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=21.31 E-value=97 Score=20.35 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=14.9
Q ss_pred HHHHHHHHhhCCCCEEEeec
Q psy149 28 LEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~G 47 (86)
...+.+.+.+.+||++.|-.
T Consensus 18 ~~~i~~~i~~~~~Dii~LQE 37 (249)
T PF03372_consen 18 RREIAQWIAELDPDIIALQE 37 (249)
T ss_dssp HHHHHHHHHHHT-SEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 44588888888999999853
No 344
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.26 E-value=1.3e+02 Score=23.91 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=15.0
Q ss_pred HHHHHHHHhhCCCCEEE
Q psy149 28 LEDLIALTVQQEPDVLI 44 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlI 44 (86)
+.++.+.+++.+||++|
T Consensus 358 ~~e~~~~i~~~~pDlii 374 (421)
T cd01976 358 HYELEEFVKRLKPDLIG 374 (421)
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 77888999999999887
No 345
>KOG0086|consensus
Probab=21.18 E-value=2e+02 Score=21.40 Aligned_cols=66 Identities=21% Similarity=0.337 Sum_probs=43.7
Q ss_pred CCCCCCCCCchHHHHHHHHhh-CCCC-EEEeeccccCCCCcc----------ccCCC---------cCCCHHHHHHHHHH
Q psy149 17 YTQSDTLSYKPLEDLIALTVQ-QEPD-VLILIGPLLDTSHPL----------LLNGS---------LAETFEDFYVKLID 75 (86)
Q Consensus 17 fT~~d~l~y~pL~~ll~~v~~-~~Pd-vlIL~GPFiD~~h~~----------i~~g~---------~~~t~eelF~~~i~ 75 (86)
|.-...-+|+.|..-|.-++. ..|+ ++||+|-==|-++.. -++.+ ..+..||-|-++..
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 333444567888888888887 4455 677888755544411 00111 15678999999999
Q ss_pred Hhhcccc
Q psy149 76 SIVQPLE 82 (86)
Q Consensus 76 ~i~~~~~ 82 (86)
.|+.+++
T Consensus 169 tIl~kIE 175 (214)
T KOG0086|consen 169 TILNKIE 175 (214)
T ss_pred HHHHHHh
Confidence 9998875
No 346
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=21.14 E-value=1.2e+02 Score=22.78 Aligned_cols=11 Identities=27% Similarity=0.307 Sum_probs=9.4
Q ss_pred EEEEeCCCCCC
Q psy149 10 MFVSAGPYTQS 20 (86)
Q Consensus 10 i~vAaGPfT~~ 20 (86)
|++||||+|.+
T Consensus 15 i~~aag~~~~~ 25 (299)
T cd02940 15 FGLASAPPTTS 25 (299)
T ss_pred CEeCCcCCCCC
Confidence 79999999854
No 347
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=21.10 E-value=2e+02 Score=22.28 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=39.0
Q ss_pred eEEEEeCCCCCCCCCCC------------chHHHHHHHH-----------hhC-CCCEEEeeccccCCCCccccCCCcCC
Q psy149 9 SMFVSAGPYTQSDTLSY------------KPLEDLIALT-----------VQQ-EPDVLILIGPLLDTSHPLLLNGSLAE 64 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y------------~pL~~ll~~v-----------~~~-~PdvlIL~GPFiD~~h~~i~~g~~~~ 64 (86)
...+..||||....|-. +-+.+|++++ .+. .+|++.+.-++--..-+.+. ++
T Consensus 115 ~~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LS----pe 190 (321)
T cd03309 115 DVPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFIS----PA 190 (321)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccC----HH
Confidence 44566788886443321 2344555444 223 78988775444332223322 66
Q ss_pred CHHHHHHHHHHHhhccccC
Q psy149 65 TFEDFYVKLIDSIVQPLEK 83 (86)
Q Consensus 65 t~eelF~~~i~~i~~~~~~ 83 (86)
.|+|++..-..+|++.+++
T Consensus 191 ~f~efv~P~~krIi~~ik~ 209 (321)
T cd03309 191 TFREFILPRMQRIFDFLRS 209 (321)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777776666666666654
No 348
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.03 E-value=1.4e+02 Score=20.78 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=28.3
Q ss_pred ceeEEEEeCCCCCCC--CCCCchHHHHHHHHhhCC-CC-EEEeeccccCC
Q psy149 7 SLSMFVSAGPYTQSD--TLSYKPLEDLIALTVQQE-PD-VLILIGPLLDT 52 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d--~l~y~pL~~ll~~v~~~~-Pd-vlIL~GPFiD~ 52 (86)
.+.++ .+|+....- -+..+.+.++++.+++.- .| |+|=++|..+.
T Consensus 114 ~l~vl-~~g~~~~~~~~~~~~~~l~~~l~~l~~~y~~D~IiiD~pp~~~~ 162 (207)
T TIGR03018 114 RLSLL-PAGRRHPNPTELLASQRMRSLLHELARRYPDRIIIIDTPPLLVF 162 (207)
T ss_pred CEEEE-eCCCCCCCHHHHhCcHHHHHHHHHHHhhCCCCEEEEECCCCcch
Confidence 45544 446554331 245577899999998874 58 55557777764
No 349
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=20.95 E-value=1.2e+02 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.1
Q ss_pred HHHHHHhhCCCCEEEeeccc
Q psy149 30 DLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPF 49 (86)
.+.+.+++.+||+++..++.
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~ 101 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGY 101 (357)
T ss_pred HHHHHHHhcCCCEEEECCCc
Confidence 33556677899999999854
No 350
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=20.92 E-value=2.7e+02 Score=20.40 Aligned_cols=36 Identities=11% Similarity=0.328 Sum_probs=25.5
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHhh--CCCCEEEeec
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ--QEPDVLILIG 47 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~--~~PdvlIL~G 47 (86)
.+..-|++-.|+-|... ...++++.+ .+|..||-+|
T Consensus 73 PR~ADillVeG~VT~~m-------~~~l~~~~e~~p~pK~VIAvG 110 (181)
T PRK14817 73 PRQADLLMVVGTVNCKQ-------APILQRVYEQMADPKWVMAFG 110 (181)
T ss_pred CcceeEEEEEecCCccc-------hHHHHHHHHHcccCCEEEEec
Confidence 45667999999998774 334555554 6788898774
No 351
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=20.91 E-value=1.9e+02 Score=25.23 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=34.2
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQ 79 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~ 79 (86)
+|=|.....-.|.+..++++.+.++++|+++|++ .+.++.+.+..++..+-+
T Consensus 608 ~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvlcs--------------~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 608 DLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSS--------------LAAGHKTLVPALIEALKK 659 (714)
T ss_pred hCCeeEecCCCCCCHHHHHHHHHHcCCCEEEEec--------------cchhhHHHHHHHHHHHHh
Confidence 3444443333467788999999999999999965 355666666555555433
No 352
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=20.91 E-value=86 Score=18.94 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=19.8
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhh-CCCCEEEe
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ-QEPDVLIL 45 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~-~~PdvlIL 45 (86)
+..++++.| |+...-+..+-..++++.+.+ -+|+-.++
T Consensus 70 ~~D~v~~~~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 70 PFDLVICSG-FTLHFLLPLDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp CEEEEEECS-GSGGGCCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCEEEECC-CccccccchhHHHHHHHHHHHhcCCCcEEE
Confidence 455666666 544433433444555665554 55654444
No 353
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=20.83 E-value=1.2e+02 Score=22.42 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
-+...+++++..+||+|++.+.-
T Consensus 175 d~~~~v~~l~~~~pd~v~~~~~~ 197 (334)
T cd06356 175 DFGSTIQKIQAAKPDFVMSILVG 197 (334)
T ss_pred hHHHHHHHHHhcCCCEEEEeccC
Confidence 35677889999999999986543
No 354
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.79 E-value=2.3e+02 Score=18.86 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=14.1
Q ss_pred HHHHHHH---hhCCCCEEEeeccccCC
Q psy149 29 EDLIALT---VQQEPDVLILIGPLLDT 52 (86)
Q Consensus 29 ~~ll~~v---~~~~PdvlIL~GPFiD~ 52 (86)
.++++++ ...+||+++++.=-=|.
T Consensus 54 ~~~~~~l~~~~~~~pd~Vii~~G~ND~ 80 (191)
T cd01836 54 ADLLRQLAPLPETRFDVAVISIGVNDV 80 (191)
T ss_pred HHHHHHHHhcccCCCCEEEEEecccCc
Confidence 4444444 46899988775433343
No 355
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=20.77 E-value=1e+02 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=16.9
Q ss_pred chHHHHHHHHhhCCCCE-EEeecc
Q psy149 26 KPLEDLIALTVQQEPDV-LILIGP 48 (86)
Q Consensus 26 ~pL~~ll~~v~~~~Pdv-lIL~GP 48 (86)
+-|.++++++++..|++ ++++|+
T Consensus 106 ~~l~~~i~~ir~~~p~~~Ivv~~~ 129 (204)
T cd04506 106 NNLKKIFKEIRKLNPDAPIFLVGL 129 (204)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEec
Confidence 35788999999877874 556773
No 356
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=20.75 E-value=1.2e+02 Score=22.19 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=18.7
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+...++++++.+||++++.+.--|.
T Consensus 176 ~~~~v~~l~~~~pd~v~~~~~~~~~ 200 (333)
T cd06358 176 FTSVLERIAASGADAVLSTLVGQDA 200 (333)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCch
Confidence 4667788999999999887654343
No 357
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=20.68 E-value=1e+02 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=23.9
Q ss_pred CCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 23 LSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 23 l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.+|+...+-+..+.+++||.+|=+||
T Consensus 65 ~sYe~V~ekvpel~~~~~~~viHL~~ 90 (166)
T PF06162_consen 65 VSYEEVDEKVPELWKEQPDFVIHLAS 90 (166)
T ss_pred chHHHHHHHhHHHHhhCCCeEEEecC
Confidence 57899999999999999999999997
No 358
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=20.55 E-value=2.3e+02 Score=19.82 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=33.0
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+-+.+++-+|-.. -..+|-+.|-+++..++++++++.+.
T Consensus 40 ~~~fI~tQ~P~~~-------t~~~FW~mv~~~~~~~IV~l~~~~e~ 78 (231)
T cd00047 40 PKAYIATQGPLPN-------TVEDFWRMVWEQKVPVIVMLTELVEK 78 (231)
T ss_pred CcceEEcCCCChh-------hHHHHHHHHHhcCCCEEEEccccccC
Confidence 4677888888663 68999999999999999999998764
No 359
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.55 E-value=1.1e+02 Score=23.55 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.2
Q ss_pred HHHHhhCCCCEEEeeccccC
Q psy149 32 IALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 32 l~~v~~~~PdvlIL~GPFiD 51 (86)
+..+++.|||++|-+|=++.
T Consensus 84 ~~i~~~~kPdvvi~~Ggy~s 103 (352)
T PRK12446 84 YVRIRKLKPDVIFSKGGFVS 103 (352)
T ss_pred HHHHHhcCCCEEEecCchhh
Confidence 35577899999999997774
No 360
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=20.43 E-value=1.7e+02 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=20.4
Q ss_pred CCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 22 TLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 22 ~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
|-..+-..+.++.+++.++|++|=+|
T Consensus 89 ~P~~~~v~~~~~~~r~~~~D~IiavG 114 (395)
T PRK15454 89 EPCITDVCAAVAQLRESGCDGVIAFG 114 (395)
T ss_pred CcCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 44455677888888889999998887
No 361
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=20.42 E-value=1.2e+02 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=19.0
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCC
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+..++.+++..+||+|++.|---|.
T Consensus 176 ~~~~v~~~~~~~~d~v~~~~~~~~~ 200 (333)
T cd06331 176 FGSVIEKIKAAGPDVVLSTLVGDSN 200 (333)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCh
Confidence 5677888888999999987754333
No 362
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.36 E-value=2.6e+02 Score=18.28 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=8.1
Q ss_pred hCCCCEEEeeccccC
Q psy149 37 QQEPDVLILIGPLLD 51 (86)
Q Consensus 37 ~~~PdvlIL~GPFiD 51 (86)
..+||+++++.=-=|
T Consensus 48 ~~~p~~vvi~~G~ND 62 (171)
T cd04502 48 PYQPRRVVLYAGDND 62 (171)
T ss_pred cCCCCEEEEEEecCc
Confidence 346776666554333
No 363
>KOG3488|consensus
Probab=20.34 E-value=32 Score=22.14 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=8.1
Q ss_pred eeccccCCCC
Q psy149 45 LIGPLLDTSH 54 (86)
Q Consensus 45 L~GPFiD~~h 54 (86)
++=||+|+.|
T Consensus 28 iilPFvDs~h 37 (81)
T KOG3488|consen 28 IILPFVDSMH 37 (81)
T ss_pred hhhcccchhH
Confidence 3459999999
No 364
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.31 E-value=1.8e+02 Score=21.50 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=22.8
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
.--|... .-+|++ .+.++++.+||++++.+..-|
T Consensus 178 ~~~~~~~-~~d~~~---~i~~l~~~~~d~v~~~~~~~~ 211 (347)
T cd06340 178 DISYPAN-ARDLTS---EVLKLKAANPDAILPASYTND 211 (347)
T ss_pred eeccCCC-CcchHH---HHHHHHhcCCCEEEEcccchh
Confidence 3344433 335554 677888899999999887655
No 365
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=20.29 E-value=1.5e+02 Score=23.27 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=19.8
Q ss_pred CCCCchHHHHHHHH-hhCCCCEEEeeccc
Q psy149 22 TLSYKPLEDLIALT-VQQEPDVLILIGPL 49 (86)
Q Consensus 22 ~l~y~pL~~ll~~v-~~~~PdvlIL~GPF 49 (86)
.++=+-..+-+... .+-+||.+|.++|=
T Consensus 42 Km~pe~~~~~~~~~~~~~~pDf~i~isPN 70 (277)
T PRK00994 42 KMGPEEVEEVVKKMLEEWKPDFVIVISPN 70 (277)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 44445556656555 56799999999993
No 366
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=20.23 E-value=1.1e+02 Score=21.46 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=21.2
Q ss_pred CchHHHHHHHHh-hCCCCEEEeeccccCCCC
Q psy149 25 YKPLEDLIALTV-QQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 25 y~pL~~ll~~v~-~~~PdvlIL~GPFiD~~h 54 (86)
|....+.+..+. +.+||++|.+|-.--.+.
T Consensus 45 y~~~~~~~~~~~~~~~pd~vlhlG~~~~~~~ 75 (194)
T cd00501 45 FQKAVEVLPELIEEHKPDLVIHVGLAGGRST 75 (194)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccCCCCc
Confidence 666666665544 579999999998765444
No 367
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=20.17 E-value=2.3e+02 Score=20.95 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=22.1
Q ss_pred CCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 20 SDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 20 ~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
...+..+.+.++++++.+....++++.|+
T Consensus 191 ~k~Wp~e~~a~li~~l~~~~~~ivl~~G~ 219 (322)
T PRK10964 191 DKHWPEAHWRELIGLLAPSGLRIKLPWGA 219 (322)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 46788888999999998766666665565
No 368
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.17 E-value=1.4e+02 Score=21.82 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 22 TLSYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 22 ~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
+|.++.+.++++++++...+..+++-|=-.
T Consensus 112 Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~ 141 (242)
T cd04724 112 DLPPEEAEEFREAAKEYGLDLIFLVAPTTP 141 (242)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 456677777788888877777777777543
No 369
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=20.13 E-value=1.2e+02 Score=23.13 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHHHhhCCCCEEEeecc
Q psy149 28 LEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GP 48 (86)
+...+.+++..+||+|++.|-
T Consensus 205 ~~~~v~~l~~~~~d~v~~~~~ 225 (369)
T PRK15404 205 FSALIAKLKKENVDFVYYGGY 225 (369)
T ss_pred hHHHHHHHHhcCCCEEEECCC
Confidence 555788999999999887653
No 370
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.10 E-value=1.3e+02 Score=20.68 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=17.2
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|..++++.+.+++||++-+
T Consensus 39 v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILV 58 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEE
Confidence 47789999999999998876
No 371
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=20.08 E-value=89 Score=21.00 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=14.4
Q ss_pred HHHHHHHHhhCCCCEEEeecc
Q psy149 28 LEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GP 48 (86)
|..|.+.+++.....+++.||
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~ 28 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGP 28 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEES
T ss_pred HHHHHHHHHhhcCcEEEEEcC
Confidence 556666666666788888898
No 372
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=20.07 E-value=1.8e+02 Score=21.36 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=19.2
Q ss_pred EeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEee
Q psy149 13 SAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 13 AaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+.-.|.. +.-||. ..+.+++..+||++++.
T Consensus 169 ~~~~~~~-~~~d~~---~~v~~l~~~~pd~V~~~ 198 (333)
T cd06328 169 TEEYAPT-DTTDFT---PYAQRLLDALKKVLFVI 198 (333)
T ss_pred eeeeCCC-CCcchH---HHHHHHHhcCCCEEEEE
Confidence 3444443 344444 45788888999998775
No 373
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=20.02 E-value=51 Score=25.20 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
+..+|.+.|++.+||+||=
T Consensus 94 ~~~~L~eav~~~kptvlIG 112 (254)
T cd00762 94 ESGDLEDAVEAAKPDFLIG 112 (254)
T ss_pred ccCCHHHHHHhhCCCEEEE
Confidence 3457888888899999885
No 374
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=20.01 E-value=50 Score=25.25 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=13.8
Q ss_pred HHHHHHHhhCCCCEEEee
Q psy149 29 EDLIALTVQQEPDVLILI 46 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~ 46 (86)
.+|.+.|+..|||+||=+
T Consensus 96 ~~L~eav~~~kPtvLIG~ 113 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGL 113 (255)
T ss_dssp SSHHHHHHCH--SEEEEC
T ss_pred cCHHHHHHhcCCCEEEEe
Confidence 589999999999999865
Done!