Query psy149
Match_columns 86
No_of_seqs 101 out of 193
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 23:39:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3flo_A DNA polymerase alpha su 100.0 7.7E-29 2.6E-33 197.4 7.4 80 3-82 143-232 (460)
2 2yvt_A Hypothetical protein AQ 88.7 0.97 3.3E-05 30.7 5.5 44 6-54 4-47 (260)
3 1uf3_A Hypothetical protein TT 87.0 1 3.6E-05 29.5 4.7 43 6-53 4-46 (228)
4 2nuw_A 2-keto-3-deoxygluconate 85.8 0.59 2E-05 34.1 3.2 56 14-80 8-64 (288)
5 2wkj_A N-acetylneuraminate lya 85.8 0.6 2.1E-05 34.3 3.3 55 14-79 20-75 (303)
6 3b4u_A Dihydrodipicolinate syn 85.4 0.65 2.2E-05 34.0 3.3 56 14-80 12-68 (294)
7 1f6k_A N-acetylneuraminate lya 85.4 0.68 2.3E-05 33.8 3.4 34 14-47 12-46 (293)
8 1w3i_A EDA, 2-keto-3-deoxy glu 85.4 0.65 2.2E-05 33.9 3.2 56 14-80 8-64 (293)
9 1xky_A Dihydrodipicolinate syn 85.3 0.66 2.3E-05 34.1 3.2 34 14-47 21-54 (301)
10 3cpr_A Dihydrodipicolinate syn 85.1 0.7 2.4E-05 34.0 3.3 55 14-79 25-80 (304)
11 3h5d_A DHDPS, dihydrodipicolin 84.7 0.86 2.9E-05 33.7 3.7 57 14-81 16-73 (311)
12 3dz1_A Dihydrodipicolinate syn 84.3 0.78 2.7E-05 33.9 3.3 38 10-47 12-50 (313)
13 2ojp_A DHDPS, dihydrodipicolin 84.1 0.67 2.3E-05 33.8 2.8 55 14-79 10-65 (292)
14 3na8_A Putative dihydrodipicol 83.9 0.72 2.5E-05 34.2 3.0 34 14-47 33-66 (315)
15 3l21_A DHDPS, dihydrodipicolin 83.8 0.86 3E-05 33.5 3.3 56 14-80 24-80 (304)
16 3flu_A DHDPS, dihydrodipicolin 83.6 0.88 3E-05 33.3 3.3 34 14-47 16-49 (297)
17 3s5o_A 4-hydroxy-2-oxoglutarat 83.2 0.89 3E-05 33.5 3.2 56 15-81 24-80 (307)
18 3fkr_A L-2-keto-3-deoxyarabona 83.2 0.77 2.6E-05 33.9 2.8 34 14-47 17-50 (309)
19 3si9_A DHDPS, dihydrodipicolin 83.1 0.84 2.9E-05 33.9 3.0 34 14-47 31-64 (315)
20 3tak_A DHDPS, dihydrodipicolin 82.7 0.84 2.9E-05 33.3 2.8 34 14-47 10-43 (291)
21 2r8w_A AGR_C_1641P; APC7498, d 82.5 0.86 2.9E-05 34.1 2.9 34 14-47 43-76 (332)
22 3qze_A DHDPS, dihydrodipicolin 82.2 0.88 3E-05 33.7 2.8 34 14-47 32-65 (314)
23 2pcq_A Putative dihydrodipicol 81.9 0.66 2.2E-05 33.7 2.0 33 14-47 7-39 (283)
24 2v9d_A YAGE; dihydrodipicolini 81.8 0.92 3.1E-05 34.1 2.8 34 14-47 40-73 (343)
25 2yxg_A DHDPS, dihydrodipicolin 81.7 0.64 2.2E-05 33.9 1.9 33 14-47 10-42 (289)
26 2hmc_A AGR_L_411P, dihydrodipi 81.5 0.94 3.2E-05 34.2 2.8 34 14-47 35-68 (344)
27 2r91_A 2-keto-3-deoxy-(6-phosp 81.1 0.65 2.2E-05 33.8 1.8 54 14-79 8-62 (286)
28 2ehh_A DHDPS, dihydrodipicolin 80.8 0.69 2.4E-05 33.7 1.8 33 14-47 10-42 (294)
29 1o5k_A DHDPS, dihydrodipicolin 80.7 0.71 2.4E-05 34.0 1.8 33 14-47 22-54 (306)
30 1ii7_A MRE11 nuclease; RAD50, 80.4 2 6.8E-05 31.0 4.2 31 26-56 27-57 (333)
31 3a5f_A Dihydrodipicolinate syn 80.3 1.3 4.4E-05 32.2 3.1 33 14-47 11-43 (291)
32 3d0c_A Dihydrodipicolinate syn 80.1 0.87 3E-05 33.7 2.2 34 14-47 20-54 (314)
33 3ck2_A Conserved uncharacteriz 79.2 3 0.0001 27.2 4.5 36 8-49 7-42 (176)
34 3eb2_A Putative dihydrodipicol 78.9 0.69 2.4E-05 34.0 1.3 34 14-47 13-46 (300)
35 4dpp_A DHDPS 2, dihydrodipicol 78.9 1.5 5.2E-05 33.6 3.2 34 14-47 68-101 (360)
36 3e96_A Dihydrodipicolinate syn 78.8 0.99 3.4E-05 33.3 2.1 34 14-47 20-54 (316)
37 1s3l_A Hypothetical protein MJ 77.7 4 0.00014 27.4 4.8 39 8-51 26-64 (190)
38 3qfe_A Putative dihydrodipicol 76.9 1.1 3.9E-05 33.2 2.0 34 14-47 19-53 (318)
39 3daq_A DHDPS, dihydrodipicolin 76.7 1.1 3.8E-05 32.7 1.8 33 14-47 12-44 (292)
40 2q8u_A Exonuclease, putative; 76.6 2.5 8.6E-05 30.4 3.7 31 26-56 48-79 (336)
41 3av0_A DNA double-strand break 75.4 2.5 8.5E-05 31.4 3.5 31 26-56 47-77 (386)
42 4fbw_A DNA repair protein RAD3 72.6 3.9 0.00013 31.7 4.1 53 5-57 11-70 (417)
43 3t1i_A Double-strand break rep 71.6 4.2 0.00014 31.7 4.1 51 6-56 31-88 (431)
44 4fbk_A DNA repair and telomere 70.7 4.4 0.00015 32.2 4.1 53 5-57 74-133 (472)
45 2nxf_A Putative dimetal phosph 69.8 10 0.00035 25.7 5.4 29 26-54 38-66 (322)
46 2rfg_A Dihydrodipicolinate syn 68.9 1.9 6.5E-05 31.5 1.5 33 14-47 10-42 (297)
47 2vc6_A MOSA, dihydrodipicolina 68.5 1.7 5.8E-05 31.6 1.2 33 14-47 10-42 (292)
48 3m5v_A DHDPS, dihydrodipicolin 67.6 2.1 7.1E-05 31.3 1.5 33 14-47 17-49 (301)
49 1su1_A Hypothetical protein YF 66.5 3.7 0.00013 27.9 2.5 40 8-52 26-65 (208)
50 3tho_B Exonuclease, putative; 65.3 5.8 0.0002 29.4 3.6 30 27-56 31-61 (379)
51 3qfm_A SAPH, putative uncharac 60.5 7 0.00024 27.7 3.1 41 7-52 11-51 (270)
52 3dzc_A UDP-N-acetylglucosamine 55.2 8.7 0.0003 28.4 3.0 23 28-50 100-122 (396)
53 3vsj_A 2-amino-5-chlorophenol 54.8 9.1 0.00031 27.2 2.9 21 28-48 31-51 (271)
54 1nnw_A Hypothetical protein; s 53.5 8 0.00027 26.1 2.4 39 9-52 3-46 (252)
55 2qjc_A Diadenosine tetraphosph 52.5 9.9 0.00034 26.7 2.8 40 9-53 20-60 (262)
56 3rqz_A Metallophosphoesterase; 51.7 20 0.00067 24.5 4.2 40 7-53 3-42 (246)
57 1g5b_A Serine/threonine protei 51.2 11 0.00038 25.3 2.8 42 7-53 12-54 (221)
58 2pa7_A DTDP-6-deoxy-3,4-keto-h 50.2 13 0.00043 24.8 2.9 30 3-32 102-132 (141)
59 4hwg_A UDP-N-acetylglucosamine 50.1 12 0.0004 27.9 3.0 23 27-49 82-104 (385)
60 3ib7_A ICC protein; metallopho 49.3 17 0.00059 25.0 3.6 50 5-54 23-81 (330)
61 3ot5_A UDP-N-acetylglucosamine 49.2 12 0.00042 27.7 3.0 22 28-49 103-124 (403)
62 1jx7_A Hypothetical protein YC 47.9 40 0.0014 20.0 4.8 64 7-73 3-68 (117)
63 3s2u_A UDP-N-acetylglucosamine 47.6 14 0.00048 26.8 3.0 22 30-51 83-104 (365)
64 2xmo_A LMO2642 protein; phosph 46.2 16 0.00055 26.9 3.2 29 25-53 78-106 (443)
65 3i42_A Response regulator rece 44.8 19 0.00066 20.8 2.9 19 27-45 35-53 (127)
66 1ccw_A Protein (glutamate muta 44.6 14 0.00047 23.7 2.3 23 25-47 40-62 (137)
67 2qh8_A Uncharacterized protein 43.6 35 0.0012 23.4 4.5 38 5-48 41-78 (302)
68 3thd_A Beta-galactosidase; TIM 42.9 49 0.0017 27.4 5.8 35 21-55 71-108 (654)
69 3f6p_A Transcriptional regulat 42.7 21 0.00072 20.7 2.8 18 28-45 35-52 (120)
70 4e8d_A Glycosyl hydrolase, fam 42.4 68 0.0023 26.2 6.5 34 21-54 63-99 (595)
71 3d03_A Phosphohydrolase; glyce 42.2 27 0.00094 23.2 3.6 28 26-53 26-55 (274)
72 3grc_A Sensor protein, kinase; 42.1 24 0.00083 20.8 3.0 19 27-45 38-56 (140)
73 3nhm_A Response regulator; pro 41.9 25 0.00084 20.5 3.0 18 28-45 36-53 (133)
74 2yxb_A Coenzyme B12-dependent 41.9 19 0.00064 23.8 2.7 22 25-46 55-76 (161)
75 3gl9_A Response regulator; bet 41.2 21 0.00071 20.9 2.6 18 28-45 35-52 (122)
76 4h08_A Putative hydrolase; GDS 40.4 48 0.0016 21.1 4.5 16 31-46 66-81 (200)
77 3lte_A Response regulator; str 40.2 25 0.00084 20.4 2.8 19 27-45 38-56 (132)
78 3eod_A Protein HNR; response r 40.1 23 0.00077 20.6 2.7 19 27-45 39-57 (130)
79 1b4u_B LIGA, LIGB, protocatech 39.9 20 0.00067 26.2 2.8 25 24-48 29-59 (302)
80 4f1h_A Tyrosyl-DNA phosphodies 39.5 21 0.00072 22.4 2.6 20 27-46 22-41 (250)
81 2z08_A Universal stress protei 39.2 29 0.001 20.8 3.2 21 26-46 86-106 (137)
82 4e7p_A Response regulator; DNA 38.6 26 0.0009 21.1 2.9 19 27-45 54-72 (150)
83 2dfj_A Diadenosinetetraphospha 38.6 19 0.00064 25.9 2.4 30 24-53 12-42 (280)
84 1v4v_A UDP-N-acetylglucosamine 38.2 30 0.001 24.2 3.4 20 29-48 81-100 (376)
85 3hdg_A Uncharacterized protein 38.2 22 0.00075 20.9 2.4 20 26-45 38-57 (137)
86 3fdx_A Putative filament prote 38.1 31 0.0011 20.6 3.2 21 26-46 93-113 (143)
87 3lft_A Uncharacterized protein 37.7 41 0.0014 22.9 4.1 25 24-48 47-71 (295)
88 3t6k_A Response regulator rece 37.6 28 0.00097 20.7 2.9 18 28-45 37-54 (136)
89 3a10_A Response regulator; pho 37.4 30 0.001 19.5 2.9 18 28-45 34-51 (116)
90 3p9x_A Phosphoribosylglycinami 37.3 25 0.00085 24.8 2.9 19 29-47 71-89 (211)
91 3auf_A Glycinamide ribonucleot 36.4 26 0.0009 24.7 2.9 20 29-48 91-110 (229)
92 3hgm_A Universal stress protei 36.4 35 0.0012 20.4 3.2 20 26-45 97-116 (147)
93 3tqr_A Phosphoribosylglycinami 36.4 27 0.00091 24.6 2.9 19 29-47 73-91 (215)
94 3cnb_A DNA-binding response re 36.3 31 0.001 20.2 2.8 20 27-46 42-61 (143)
95 3ezx_A MMCP 1, monomethylamine 36.2 21 0.00071 24.8 2.3 22 26-47 130-151 (215)
96 4fva_A 5'-tyrosyl-DNA phosphod 36.2 25 0.00084 22.7 2.6 21 27-47 32-52 (256)
97 2jc4_A Exodeoxyribonuclease II 36.1 29 0.00099 22.6 2.9 22 27-48 14-35 (256)
98 3av3_A Phosphoribosylglycinami 36.0 27 0.00093 24.2 2.9 18 30-47 73-90 (212)
99 1jmv_A USPA, universal stress 35.9 35 0.0012 20.4 3.1 20 26-45 89-108 (141)
100 3c97_A Signal transduction his 35.8 32 0.0011 20.4 2.9 19 27-45 42-60 (140)
101 2ywr_A Phosphoribosylglycinami 35.8 27 0.00094 24.2 2.9 20 29-48 70-89 (216)
102 1jkx_A GART;, phosphoribosylgl 35.7 28 0.00094 24.3 2.9 19 29-47 69-87 (212)
103 3kcq_A Phosphoribosylglycinami 35.5 28 0.00096 24.5 2.9 19 29-47 72-90 (215)
104 3tnj_A Universal stress protei 35.5 36 0.0012 20.6 3.2 20 26-45 96-115 (150)
105 4gz1_A Tyrosyl-DNA phosphodies 35.5 26 0.00089 22.5 2.6 20 27-46 28-47 (256)
106 3hv2_A Response regulator/HD d 35.4 34 0.0012 20.6 3.0 19 27-45 46-64 (153)
107 1mjh_A Protein (ATP-binding do 35.4 36 0.0012 20.9 3.2 20 26-45 107-126 (162)
108 3b2n_A Uncharacterized protein 35.3 26 0.00088 20.6 2.4 18 28-45 38-55 (133)
109 3kht_A Response regulator; PSI 35.2 30 0.001 20.5 2.7 19 27-45 39-57 (144)
110 3n53_A Response regulator rece 35.1 28 0.00097 20.5 2.6 18 28-45 35-52 (140)
111 3gt7_A Sensor protein; structu 35.0 29 0.001 21.1 2.7 19 27-45 39-57 (154)
112 1q77_A Hypothetical protein AQ 35.0 35 0.0012 20.3 3.0 20 26-45 96-115 (138)
113 2qzj_A Two-component response 34.6 34 0.0011 20.3 2.9 18 28-45 37-54 (136)
114 4ds3_A Phosphoribosylglycinami 34.6 25 0.00084 24.7 2.5 19 29-47 76-94 (209)
115 3dlo_A Universal stress protei 34.5 37 0.0013 21.3 3.2 20 26-45 104-123 (155)
116 1xhf_A DYE resistance, aerobic 34.4 36 0.0012 19.4 2.9 18 28-45 36-53 (123)
117 2gkg_A Response regulator homo 34.3 28 0.00097 19.7 2.4 18 28-45 38-55 (127)
118 2voa_A AF_EXO, XTHA, exodeoxyr 34.2 28 0.00096 22.9 2.6 23 27-49 15-37 (257)
119 3eul_A Possible nitrate/nitrit 33.9 30 0.001 20.8 2.6 19 27-45 49-67 (152)
120 1meo_A Phosophoribosylglycinam 33.9 33 0.0011 23.9 3.0 19 29-47 69-87 (209)
121 2pl1_A Transcriptional regulat 33.7 37 0.0013 19.2 2.9 19 27-45 32-50 (121)
122 1y80_A Predicted cobalamin bin 33.7 25 0.00086 23.7 2.4 22 26-47 126-147 (210)
123 2qxy_A Response regulator; reg 33.7 33 0.0011 20.2 2.7 20 27-46 36-55 (142)
124 1tq8_A Hypothetical protein RV 33.7 38 0.0013 21.4 3.2 20 26-45 106-125 (163)
125 1dz3_A Stage 0 sporulation pro 33.6 29 0.00099 20.2 2.4 18 28-45 37-54 (130)
126 3cg0_A Response regulator rece 33.5 31 0.0011 20.1 2.6 20 26-45 41-60 (140)
127 2j48_A Two-component sensor ki 33.4 33 0.0011 18.9 2.6 18 28-45 34-51 (119)
128 3fvw_A Putative NAD(P)H-depend 33.3 64 0.0022 21.3 4.4 78 3-86 108-187 (192)
129 2qv0_A Protein MRKE; structura 33.3 37 0.0012 20.0 2.9 19 27-45 43-61 (143)
130 3m6m_D Sensory/regulatory prot 33.2 36 0.0012 20.4 2.9 18 28-45 47-64 (143)
131 1zgz_A Torcad operon transcrip 33.1 39 0.0013 19.2 2.9 18 28-45 35-52 (122)
132 1srr_A SPO0F, sporulation resp 33.1 30 0.001 19.9 2.4 18 28-45 36-53 (124)
133 3da8_A Probable 5'-phosphoribo 33.0 31 0.0011 24.2 2.8 19 29-47 79-97 (215)
134 1q74_A 1D-MYO-inosityl 2-aceta 33.0 35 0.0012 24.7 3.2 26 29-54 119-144 (303)
135 3ilh_A Two component response 32.9 38 0.0013 19.8 2.9 19 27-45 43-66 (146)
136 1tmy_A CHEY protein, TMY; chem 32.9 31 0.0011 19.6 2.4 19 27-45 35-53 (120)
137 3crn_A Response regulator rece 32.9 38 0.0013 19.8 2.9 18 28-45 36-53 (132)
138 3skv_A SSFX3; jelly roll, GDSL 32.7 63 0.0022 24.3 4.7 26 26-51 268-294 (385)
139 1vgv_A UDP-N-acetylglucosamine 32.6 33 0.0011 23.9 2.9 20 29-48 76-95 (384)
140 1p6q_A CHEY2; chemotaxis, sign 32.5 39 0.0013 19.4 2.8 20 26-45 38-57 (129)
141 4gnr_A ABC transporter substra 32.4 44 0.0015 23.1 3.5 34 12-49 173-206 (353)
142 3lac_A Pyrrolidone-carboxylate 32.3 34 0.0012 24.1 2.9 25 24-48 45-70 (215)
143 2dum_A Hypothetical protein PH 32.2 43 0.0015 20.8 3.2 20 26-45 104-123 (170)
144 3kyj_B CHEY6 protein, putative 32.1 38 0.0013 20.1 2.8 19 27-45 47-66 (145)
145 3otg_A CALG1; calicheamicin, T 32.0 31 0.0011 24.3 2.7 22 29-50 120-141 (412)
146 1ute_A Protein (II purple acid 31.9 33 0.0011 23.1 2.7 20 33-52 37-56 (313)
147 3c3m_A Response regulator rece 31.8 40 0.0014 19.9 2.9 18 28-45 36-53 (138)
148 2zay_A Response regulator rece 31.6 35 0.0012 20.2 2.6 20 27-46 40-59 (147)
149 2a9o_A Response regulator; ess 31.4 34 0.0012 19.3 2.4 18 28-45 34-51 (120)
150 3beo_A UDP-N-acetylglucosamine 31.2 37 0.0013 23.4 3.0 20 30-49 86-105 (375)
151 3cz5_A Two-component response 31.0 44 0.0015 20.0 3.0 19 27-45 39-57 (153)
152 2bln_A Protein YFBG; transfera 30.9 43 0.0015 24.4 3.4 18 30-47 66-83 (305)
153 3cg4_A Response regulator rece 30.9 38 0.0013 19.9 2.6 19 27-45 39-57 (142)
154 1mb3_A Cell division response 30.9 35 0.0012 19.4 2.4 17 29-45 35-51 (124)
155 2rdm_A Response regulator rece 30.6 43 0.0015 19.3 2.8 19 27-45 37-56 (132)
156 3s3t_A Nucleotide-binding prot 30.5 46 0.0016 19.9 3.0 20 26-45 94-114 (146)
157 3cfy_A Putative LUXO repressor 30.4 34 0.0012 20.3 2.4 18 28-45 37-54 (137)
158 3cu5_A Two component transcrip 30.3 40 0.0014 20.1 2.7 19 27-45 37-55 (141)
159 3ro0_A Pyrrolidone-carboxylate 30.3 40 0.0014 24.0 3.0 25 24-48 46-71 (223)
160 1dbw_A Transcriptional regulat 29.8 35 0.0012 19.7 2.3 18 28-45 36-53 (126)
161 1jbe_A Chemotaxis protein CHEY 29.8 42 0.0014 19.3 2.6 19 27-45 37-55 (128)
162 2qr3_A Two-component system re 29.6 32 0.0011 20.0 2.1 20 27-46 35-54 (140)
163 4hps_A Pyrrolidone-carboxylate 29.6 40 0.0014 24.1 2.9 25 24-48 67-92 (228)
164 3g21_A GAG polyprotein, capsid 29.4 36 0.0012 20.9 2.3 24 14-37 1-24 (77)
165 2rjn_A Response regulator rece 29.3 46 0.0016 20.0 2.9 19 27-45 39-57 (154)
166 3npg_A Uncharacterized DUF364 29.3 27 0.00093 25.1 2.0 23 27-51 179-201 (249)
167 4gxh_A Pyrrolidone-carboxylate 29.2 35 0.0012 24.0 2.6 26 24-49 46-72 (216)
168 3mvn_A UDP-N-acetylmuramate:L- 29.1 52 0.0018 21.3 3.2 40 5-49 63-102 (163)
169 1toa_A Tromp-1, protein (perip 29.0 29 0.00097 25.4 2.1 49 6-54 17-74 (313)
170 1ems_A Nitfhit, NIT-fragIle hi 29.0 33 0.0011 25.6 2.5 42 6-47 13-54 (440)
171 2kkn_A Uncharacterized protein 28.8 22 0.00076 23.5 1.4 40 8-51 23-62 (178)
172 1ax8_A Obesity protein, leptin 28.7 21 0.0007 24.5 1.2 45 29-74 15-65 (146)
173 1xm7_A Hypothetical protein AQ 28.7 58 0.002 21.1 3.5 26 27-52 29-56 (195)
174 3t8y_A CHEB, chemotaxis respon 28.7 37 0.0013 21.0 2.4 19 27-45 59-77 (164)
175 1f0k_A MURG, UDP-N-acetylgluco 28.6 43 0.0015 23.1 2.9 21 29-49 86-106 (364)
176 2gm3_A Unknown protein; AT3G01 28.5 44 0.0015 20.9 2.7 20 26-45 111-130 (175)
177 1jbk_A CLPB protein; beta barr 28.2 51 0.0017 20.0 3.0 23 27-49 30-52 (195)
178 3giu_A Pyrrolidone-carboxylate 28.0 39 0.0013 23.8 2.6 26 24-49 46-72 (215)
179 3rqi_A Response regulator prot 28.0 44 0.0015 21.1 2.7 19 27-45 39-57 (184)
180 1mvo_A PHOP response regulator 27.9 41 0.0014 19.5 2.4 18 28-45 36-53 (136)
181 3og2_A Beta-galactosidase; TIM 27.9 57 0.0019 28.4 4.0 36 21-56 87-125 (1003)
182 3vsj_B 2-amino-5-chlorophenol 27.4 37 0.0013 24.9 2.5 24 25-48 34-61 (312)
183 1vyb_A ORF2 contains A reverse 27.4 43 0.0015 21.5 2.6 21 29-49 25-45 (238)
184 3f6c_A Positive transcription 27.2 31 0.001 20.1 1.7 16 30-45 37-52 (134)
185 3o1l_A Formyltetrahydrofolate 27.0 45 0.0015 24.6 2.9 19 29-47 171-189 (302)
186 3o21_A Glutamate receptor 3; p 27.0 54 0.0018 23.6 3.3 22 28-49 174-195 (389)
187 2prs_A High-affinity zinc upta 26.9 57 0.0019 23.1 3.4 31 24-54 5-35 (284)
188 2lpm_A Two-component response 26.7 51 0.0017 20.7 2.8 24 28-56 42-65 (123)
189 3h6g_A Glutamate receptor, ion 26.4 48 0.0016 23.4 2.9 22 28-49 180-201 (395)
190 2p65_A Hypothetical protein PF 26.3 57 0.002 19.9 3.0 22 27-48 30-51 (187)
191 3qek_A NMDA glutamate receptor 26.2 41 0.0014 23.8 2.5 22 28-49 204-225 (384)
192 1wdu_A TRAS1 ORF2P; four-layer 26.2 44 0.0015 22.1 2.5 24 27-50 33-56 (245)
193 1x10_A Pyrrolidone-carboxylate 26.0 52 0.0018 22.9 2.9 25 24-48 44-69 (208)
194 3fg9_A Protein of universal st 25.9 41 0.0014 20.6 2.2 20 26-45 105-125 (156)
195 2w1v_A Nitrilase-2, nitrilase 25.9 36 0.0012 23.5 2.1 40 7-46 3-42 (276)
196 2qsj_A DNA-binding response re 25.8 62 0.0021 19.3 3.0 19 27-45 37-56 (154)
197 3lou_A Formyltetrahydrofolate 25.7 41 0.0014 24.7 2.5 19 29-47 161-179 (292)
198 3h5i_A Response regulator/sens 25.6 58 0.002 19.2 2.8 18 28-45 38-56 (140)
199 4f06_A Extracellular ligand-bi 25.6 67 0.0023 22.6 3.5 33 12-48 171-203 (371)
200 1xrs_B D-lysine 5,6-aminomutas 25.4 48 0.0017 24.1 2.8 21 26-46 167-187 (262)
201 3hlu_A Uncharacterized protein 25.3 76 0.0026 19.3 3.4 44 5-48 30-79 (96)
202 3nrb_A Formyltetrahydrofolate 25.3 42 0.0014 24.5 2.5 19 29-47 155-173 (287)
203 3obi_A Formyltetrahydrofolate 25.1 42 0.0015 24.5 2.4 19 29-47 156-174 (288)
204 3lua_A Response regulator rece 24.6 33 0.0011 20.2 1.5 18 28-45 38-56 (140)
205 3n0v_A Formyltetrahydrofolate 24.6 45 0.0015 24.4 2.5 19 29-47 156-174 (286)
206 1z7e_A Protein aRNA; rossmann 24.3 51 0.0017 25.8 2.9 18 30-47 66-83 (660)
207 1k68_A Phytochrome response re 24.1 67 0.0023 18.4 2.8 19 27-45 36-61 (140)
208 2wnw_A Activated by transcript 23.9 1.8E+02 0.0061 22.2 5.9 54 29-82 124-182 (447)
209 4f11_A Gamma-aminobutyric acid 23.9 63 0.0021 23.1 3.1 21 29-49 196-216 (433)
210 3teb_A Endonuclease/exonucleas 23.8 53 0.0018 21.5 2.5 22 26-47 21-42 (266)
211 2hy5_C DSRH; DSRE, DSRF, sulfu 23.8 92 0.0031 18.2 3.5 37 8-52 3-39 (102)
212 2h1q_A Hypothetical protein; Z 23.7 49 0.0017 24.1 2.5 22 27-50 201-222 (270)
213 2p10_A MLL9387 protein; putati 23.6 40 0.0014 25.3 2.1 25 27-51 213-239 (286)
214 2qvg_A Two component response 23.6 68 0.0023 18.7 2.8 19 27-45 41-65 (143)
215 3fet_A Electron transfer flavo 23.5 1E+02 0.0035 20.5 4.0 30 9-45 46-75 (166)
216 3tgh_A Glideosome-associated p 23.5 45 0.0016 24.7 2.4 24 29-52 24-47 (342)
217 3hzh_A Chemotaxis response reg 23.3 46 0.0016 20.2 2.0 20 26-45 68-89 (157)
218 1ako_A Exonuclease III; AP-end 23.2 56 0.0019 21.4 2.6 22 27-48 14-35 (268)
219 3mc3_A DSRE/DSRF-like family p 23.2 31 0.001 21.9 1.2 45 5-52 15-60 (134)
220 3izc_W 60S ribosomal protein R 23.1 53 0.0018 21.8 2.4 26 49-75 16-42 (121)
221 2ebj_A Pyrrolidone carboxyl pe 23.1 66 0.0022 22.1 3.0 18 31-48 49-66 (192)
222 3cx3_A Lipoprotein; zinc-bindi 23.0 73 0.0025 22.6 3.3 30 24-54 16-45 (284)
223 1dc7_A NTRC, nitrogen regulati 22.8 36 0.0012 19.2 1.4 18 28-45 36-53 (124)
224 3h5l_A Putative branched-chain 22.7 74 0.0025 22.6 3.3 31 13-47 197-227 (419)
225 3kcn_A Adenylate cyclase homol 22.7 72 0.0025 19.0 2.9 19 27-45 35-54 (151)
226 3iz5_W 60S ribosomal protein L 22.7 54 0.0018 22.0 2.4 27 49-76 24-51 (130)
227 3hh1_A Tetrapyrrole methylase 22.6 88 0.003 19.1 3.3 27 27-58 68-94 (117)
228 3ia7_A CALG4; glycosysltransfe 22.6 57 0.0019 22.7 2.6 19 28-46 91-109 (402)
229 3tsa_A SPNG, NDP-rhamnosyltran 22.5 51 0.0017 23.2 2.4 20 28-47 103-122 (391)
230 2jk1_A HUPR, hydrogenase trans 22.3 49 0.0017 19.5 2.0 18 28-45 33-50 (139)
231 1dp4_A Atrial natriuretic pept 22.3 52 0.0018 23.4 2.4 22 27-49 195-216 (435)
232 1zh2_A KDP operon transcriptio 22.2 63 0.0021 18.1 2.4 17 29-45 35-51 (121)
233 1k66_A Phytochrome response re 22.2 75 0.0026 18.4 2.8 19 27-45 40-68 (149)
234 1ys7_A Transcriptional regulat 22.0 71 0.0024 20.5 2.9 18 28-45 40-57 (233)
235 2b4a_A BH3024; flavodoxin-like 21.8 53 0.0018 19.2 2.1 18 28-45 48-66 (138)
236 3q9s_A DNA-binding response re 21.7 70 0.0024 21.5 2.9 19 27-45 69-87 (249)
237 2f62_A Nucleoside 2-deoxyribos 21.7 1.8E+02 0.0063 19.2 5.4 56 9-79 11-67 (161)
238 1a04_A Nitrate/nitrite respons 21.0 62 0.0021 20.7 2.4 18 28-45 40-57 (215)
239 1kgs_A DRRD, DNA binding respo 21.0 77 0.0026 20.2 2.9 18 28-45 35-52 (225)
240 2jba_A Phosphate regulon trans 20.9 32 0.0011 19.7 0.9 17 29-45 36-52 (127)
241 1fmt_A Methionyl-tRNA FMet for 20.9 74 0.0025 23.3 3.1 19 29-47 71-89 (314)
242 3p8k_A Hydrolase, carbon-nitro 20.8 58 0.002 22.8 2.4 41 5-45 18-59 (281)
243 3ujp_A Mn transporter subunit; 20.7 80 0.0027 23.0 3.2 31 24-54 37-67 (307)
244 3q9l_A Septum site-determining 20.7 1.4E+02 0.0047 19.6 4.2 44 7-51 82-126 (260)
245 3mil_A Isoamyl acetate-hydroly 20.7 94 0.0032 19.8 3.3 22 27-49 101-122 (240)
246 3gi1_A LBP, laminin-binding pr 20.7 71 0.0024 22.8 2.8 30 24-54 18-47 (286)
247 3mfq_A TROA, high-affinity zin 20.6 83 0.0028 22.4 3.2 30 25-54 13-42 (282)
248 3lkb_A Probable branched-chain 20.5 1.3E+02 0.0045 20.9 4.2 31 13-47 176-206 (392)
249 2r25_B Osmosensing histidine p 20.5 86 0.0029 18.3 2.9 17 29-45 37-58 (133)
250 3hkx_A Amidase; alpha-beta-BET 20.5 47 0.0016 23.3 1.9 40 6-45 19-59 (283)
251 2ie4_C PP2A-alpha;, serine/thr 20.3 54 0.0018 24.1 2.2 31 24-54 61-91 (309)
252 2hy5_A Putative sulfurtransfer 20.3 1.6E+02 0.0056 18.1 4.4 65 7-73 2-67 (130)
253 3jte_A Response regulator rece 20.2 85 0.0029 18.3 2.8 18 28-45 36-55 (143)
254 2i7x_A Protein CFT2; polyadeny 20.2 92 0.0031 25.5 3.7 35 7-50 337-371 (717)
No 1
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.7e-29 Score=197.36 Aligned_cols=80 Identities=34% Similarity=0.735 Sum_probs=75.8
Q ss_pred cCCCceeEEEEeCCCCCCCCCCCchHHHHHHHHhhC-CCCEEEeeccccCCCCccccCCCc---------CCCHHHHHHH
Q psy149 3 LTRRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQ-EPDVLILIGPLLDTSHPLLLNGSL---------AETFEDFYVK 72 (86)
Q Consensus 3 l~~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~-~PdvlIL~GPFiD~~h~~i~~g~~---------~~t~eelF~~ 72 (86)
+++++++|||||||||++|||+|+||.+|+++++++ +||+|||+|||||++||+|++|++ +.||+|+|++
T Consensus 143 ~~~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~ 222 (460)
T 3flo_A 143 LEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLK 222 (460)
T ss_dssp HTSSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHH
T ss_pred ccCCCcEEEEEeCCccCCCccChHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccccccccCHHHHHHH
Confidence 457899999999999999999999999999999995 899999999999999999999998 8999999999
Q ss_pred HHHHhhcccc
Q psy149 73 LIDSIVQPLE 82 (86)
Q Consensus 73 ~i~~i~~~~~ 82 (86)
+|.++++++.
T Consensus 223 ~i~~il~~l~ 232 (460)
T 3flo_A 223 LFTPILKTIS 232 (460)
T ss_dssp HTHHHHTTSC
T ss_pred HHHHHHHhcc
Confidence 9999999873
No 2
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=88.71 E-value=0.97 Score=30.66 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=34.0
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
.+++|++.| +--++++.|..+++.+++.+||+||+.|=++|...
T Consensus 4 ~~mri~~iS-----DlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 4 MPRKVLAIK-----NFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp CCCEEEEEE-----CCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred ceEEEEEEe-----ecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 456777665 22345678999999999999999999999988653
No 3
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=87.04 E-value=1 Score=29.53 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=33.0
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCC
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~ 53 (86)
.+++|++.| +--+++..+..+++.+++.+||+||+.|=++|..
T Consensus 4 ~~mri~~iS-----D~H~~~~~~~~~~~~~~~~~~D~vi~~GDl~~~~ 46 (228)
T 1uf3_A 4 TVRYILATS-----NPMGDLEALEKFVKLAPDTGADAIALIGNLMPKA 46 (228)
T ss_dssp CCCEEEEEE-----CCTTCHHHHHHHHTHHHHHTCSEEEEESCSSCTT
T ss_pred ceEEEEEEe-----eccCCHHHHHHHHHHHhhcCCCEEEECCCCCCCC
Confidence 356776655 2224567789999999888999999999998865
No 4
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=85.85 E-value=0.59 Score=34.09 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=42.2
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhcc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQP 80 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~~ 80 (86)
-=||+.+.++||+.|..++++..+...|-++.+|= .|+. ..|.+|- ++++....+.
T Consensus 8 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~eEr-~~v~~~~~~~ 64 (288)
T 2nuw_A 8 ITPFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGT----------TGLGPALSKDEK-RQNLNALYDV 64 (288)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEETST----------TTTGGGSCHHHH-HHHHHHHTTT
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHH-HHHHHHHHHH
Confidence 45999889999999999999999999999999882 4553 4566654 4444444443
No 5
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=85.83 E-value=0.6 Score=34.34 Aligned_cols=55 Identities=20% Similarity=0.401 Sum_probs=41.3
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQ 79 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~ 79 (86)
-=||+.+.++||+.|..++++..+...|-++.+|= .|+. ..|.+|- ++++....+
T Consensus 20 vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr-~~v~~~~~~ 75 (303)
T 2wkj_A 20 LTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGS----------TGEAFVQSLSER-EQVLEIVAE 75 (303)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHH-HHHHHHHHH
T ss_pred EcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECee----------ccChhhCCHHHH-HHHHHHHHH
Confidence 46999889999999999999999999999999883 4554 4566654 334443333
No 6
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=85.43 E-value=0.65 Score=33.95 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=41.7
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhcc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQP 80 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~~ 80 (86)
-=||+.+.++||+-|..++++..+...|-++.+|= .|+. ..|.+|- ++++....+.
T Consensus 12 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er-~~v~~~~~~~ 68 (294)
T 3b4u_A 12 TTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGT----------TGEGCSVGSRER-QAILSSFIAA 68 (294)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHH-HHHHHHHHHT
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHH-HHHHHHHHHH
Confidence 46999889999999999999999999999999883 3553 4566554 3444444433
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=85.41 E-value=0.68 Score=33.76 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhh-CCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQ-QEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~-~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+ ...|-++.+|
T Consensus 12 vTPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~G 46 (293)
T 1f6k_A 12 LVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGG 46 (293)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESS
T ss_pred EcCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCc
Confidence 469998899999999999999999 9999999988
No 8
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=85.36 E-value=0.65 Score=33.93 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=42.0
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhcc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQP 80 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~~ 80 (86)
-=||+.+.++||+.|..++++..+...|-++.+|= .|+. ..|.+|- ++++....+.
T Consensus 8 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~eEr-~~v~~~~~~~ 64 (293)
T 1w3i_A 8 ITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGT----------TGLGPSLSPEEK-LENLKAVYDV 64 (293)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHH-HHHHHHHHTT
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHH-HHHHHHHHHH
Confidence 35999889999999999999999999999999883 4553 4566654 4444444443
No 9
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=85.26 E-value=0.66 Score=34.09 Aligned_cols=34 Identities=9% Similarity=0.366 Sum_probs=31.7
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 21 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 54 (301)
T 1xky_A 21 VTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGG 54 (301)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4699988899999999999999999999999988
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=85.06 E-value=0.7 Score=34.01 Aligned_cols=55 Identities=22% Similarity=0.392 Sum_probs=41.3
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQ 79 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~ 79 (86)
-=||+.+.++||+-|..++++..+...|-++.+|= .|+. ..|.+|- ++++....+
T Consensus 25 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er-~~v~~~~~~ 80 (304)
T 3cpr_A 25 VTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGT----------TGESPTTTAAEK-LELLKAVRE 80 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESST----------TTTTTTSCHHHH-HHHHHHHHH
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHH-HHHHHHHHH
Confidence 46999888999999999999999999999999883 4554 4566654 334443333
No 11
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=84.69 E-value=0.86 Score=33.73 Aligned_cols=57 Identities=14% Similarity=0.365 Sum_probs=42.5
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhccc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQPL 81 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~~~ 81 (86)
-=||+.+.++||+.|..++++..+...|-++.+| ..|+. ..|.+|- ++++....+..
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er-~~v~~~~~~~~ 73 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLAHHTDGILLAG----------TTAESPTLTHDEE-LELFAAVQKVV 73 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESS----------TTTTGGGSCHHHH-HHHHHHHHHHS
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHH-HHHHHHHHHHh
Confidence 4599999999999999999999999999999888 23553 4566654 44444444443
No 12
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=84.33 E-value=0.78 Score=33.87 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=33.4
Q ss_pred EEEE-eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 10 MFVS-AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 10 i~vA-aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
|++| -=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 12 v~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 50 (313)
T 3dz1_A 12 TFAIAPTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLG 50 (313)
T ss_dssp EEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEEST
T ss_pred EEEEeeCCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCc
Confidence 4444 4699999999999999999999999999999887
No 13
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=84.13 E-value=0.67 Score=33.77 Aligned_cols=55 Identities=13% Similarity=0.309 Sum_probs=41.0
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQ 79 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~ 79 (86)
-=||+.+.++||+.+..++++..+...|-++.+|= .|+. ..|.+|- +++++...+
T Consensus 10 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er-~~v~~~~~~ 65 (292)
T 2ojp_A 10 VTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT----------TGESATLNHDEH-ADVVMMTLD 65 (292)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESST----------TTTGGGSCHHHH-HHHHHHHHH
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcc----------ccchhhCCHHHH-HHHHHHHHH
Confidence 45999888999999999999999999999999883 4554 4566553 334443333
No 14
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=83.94 E-value=0.72 Score=34.19 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=31.9
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~G 66 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLIDGGVHAIAPLG 66 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSS
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4599999999999999999999999999999988
No 15
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=83.76 E-value=0.86 Score=33.55 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=41.9
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhcc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQP 80 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~~ 80 (86)
-=||+.+.++||+-|..++++..+...|-++.+| ..|+. ..|.+|- ++++....+.
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~G----------ttGE~~~Lt~~Er-~~v~~~~~~~ 80 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVDQGCDGLVVSG----------TTGESPTTTDGEK-IELLRAVLEA 80 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHH-HHHHHHHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc----------cccchhhCCHHHH-HHHHHHHHHH
Confidence 4699999999999999999999999999999987 24553 4566654 3444444443
No 16
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=83.63 E-value=0.88 Score=33.29 Aligned_cols=34 Identities=26% Similarity=0.575 Sum_probs=31.7
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.+..++++..+...|-++.+|
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~G 49 (297)
T 3flu_A 16 ITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVG 49 (297)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 4699999999999999999999999999999988
No 17
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=83.20 E-value=0.89 Score=33.47 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=41.7
Q ss_pred CCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhccc
Q psy149 15 GPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQPL 81 (86)
Q Consensus 15 GPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~~~ 81 (86)
=||+.+.++||+.|..++++..+...|-++.+|= .|+. ..|.+|- ++++....+..
T Consensus 24 TPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~~Er-~~v~~~~~~~~ 80 (307)
T 3s5o_A 24 TPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGS----------NGEFPFLTSSER-LEVVSRVRQAM 80 (307)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSG----------GGTGGGSCHHHH-HHHHHHHHHTS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcc----------ccchhhCCHHHH-HHHHHHHHHHc
Confidence 5999999999999999999999999999999882 3443 4466654 44444444443
No 18
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=83.16 E-value=0.77 Score=33.90 Aligned_cols=34 Identities=9% Similarity=0.277 Sum_probs=31.3
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 50 (309)
T 3fkr_A 17 PTTFADTGDLDLASQKRAVDFMIDAGSDGLCILA 50 (309)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESS
T ss_pred eCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3599998999999999999999999999988887
No 19
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=83.06 E-value=0.84 Score=33.88 Aligned_cols=34 Identities=12% Similarity=0.312 Sum_probs=31.9
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 31 vTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~G 64 (315)
T 3si9_A 31 ITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVG 64 (315)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 5699998999999999999999999999999988
No 20
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=82.69 E-value=0.84 Score=33.25 Aligned_cols=34 Identities=21% Similarity=0.517 Sum_probs=31.5
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.+..++++..+...|-++.+|
T Consensus 10 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~G 43 (291)
T 3tak_A 10 VTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVG 43 (291)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECc
Confidence 4599999999999999999999999999999887
No 21
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=82.53 E-value=0.86 Score=34.07 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=31.5
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 43 vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 76 (332)
T 2r8w_A 43 ITPADEAGRVDIEAFSALIARLDAAEVDSVGILG 76 (332)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESS
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4699988899999999999999999999999988
No 22
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=82.23 E-value=0.88 Score=33.72 Aligned_cols=34 Identities=18% Similarity=0.553 Sum_probs=31.6
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.+..++++..+...|-++.+|
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 65 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVG 65 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4699999999999999999999999999999887
No 23
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=81.94 E-value=0.66 Score=33.74 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.3
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.+..++++..+. .|-++.+|
T Consensus 7 vTPf~~dg~iD~~~l~~lv~~li~~-v~gl~v~G 39 (283)
T 2pcq_A 7 PTPFDREGRLDEEAFRELAQALEPL-VDGLLVYG 39 (283)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHGGG-SSCCEETC
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHhh-CCEEEECC
Confidence 4699998999999999999999999 99988887
No 24
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=81.75 E-value=0.92 Score=34.12 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=31.4
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 40 vTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~G 73 (343)
T 2v9d_A 40 STIFTADGQLDKPGTAALIDDLIKAGVDGLFFLG 73 (343)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 4599988899999999999999999999999888
No 25
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=81.65 E-value=0.64 Score=33.85 Aligned_cols=33 Identities=15% Similarity=0.453 Sum_probs=30.5
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+ +.++||+.+..++++..+...|-++.+|
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~G 42 (289)
T 2yxg_A 10 ITPFK-NKEVDFDGLEENINFLIENGVSGIVAVG 42 (289)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHHTTCSEEEESS
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECc
Confidence 35999 8899999999999999999999999988
No 26
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=81.48 E-value=0.94 Score=34.18 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=31.4
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 35 vTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~G 68 (344)
T 2hmc_A 35 MTPCRQDRTPDFDALVRKGKELIADGMSAVVYCG 68 (344)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCCCEEESS
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 4699988899999999999999999999998888
No 27
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=81.14 E-value=0.65 Score=33.76 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=40.2
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc-CCCHHHHHHHHHHHhhc
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL-AETFEDFYVKLIDSIVQ 79 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~-~~t~eelF~~~i~~i~~ 79 (86)
-=||+ +.++||+.+..++++..+...|-++.+|= .|+. ..|.+|- ++++....+
T Consensus 8 vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er-~~v~~~~~~ 62 (286)
T 2r91_A 8 ITTFR-GGRLDPELFANHVKNITSKGVDVVFVAGT----------TGLGPALSLQEK-MELTDAATS 62 (286)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHHTTCCEEEETST----------TTTGGGSCHHHH-HHHHHHHHH
T ss_pred ecCcC-CCccCHHHHHHHHHHHHHCCCCEEEECcc----------ccChhhCCHHHH-HHHHHHHHH
Confidence 45999 88999999999999999999999999883 4553 4566654 344444333
No 28
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=80.82 E-value=0.69 Score=33.74 Aligned_cols=33 Identities=24% Similarity=0.605 Sum_probs=30.6
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+ +.++||+.+..++++..+...|-++.+|
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~G 42 (294)
T 2ehh_A 10 ITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCG 42 (294)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESS
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECc
Confidence 45999 8899999999999999999999999988
No 29
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=80.72 E-value=0.71 Score=34.00 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=30.6
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
.=||+ +.++||+.+..++++..+...|-++.+|
T Consensus 22 vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~G 54 (306)
T 1o5k_A 22 VTPFK-NGELDLESYERLVRYQLENGVNALIVLG 54 (306)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 46999 8899999999999999999999999988
No 30
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=80.38 E-value=2 Score=31.04 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=26.4
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
+-|..+++.+++.+||+||+.|=++|...|.
T Consensus 27 ~~~~~~~~~~~~~~~D~vl~~GDl~d~~~~~ 57 (333)
T 1ii7_A 27 EAFKNALEIAVQENVDFILIAGDLFHSSRPS 57 (333)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCSBSSSSCC
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcCCCCCCC
Confidence 3467889999999999999999999977653
No 31
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=80.33 E-value=1.3 Score=32.23 Aligned_cols=33 Identities=24% Similarity=0.625 Sum_probs=30.4
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+. +||+-+..++++..+...|-++.+|
T Consensus 11 vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~G 43 (291)
T 3a5f_A 11 ITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCG 43 (291)
T ss_dssp CCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred EcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECc
Confidence 45999888 9999999999999999999999988
No 32
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=80.06 E-value=0.87 Score=33.68 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=31.1
Q ss_pred eCCC-CCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPY-TQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPf-T~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=|| +.+.++||+.|..++++..+...|-++.+|
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 54 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNG 54 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTS
T ss_pred eccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4699 888899999999999999999999999887
No 33
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=79.19 E-value=3 Score=27.20 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.4
Q ss_pred eeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccc
Q psy149 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 8 l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
+++++.|---. +++.|..+++.+++ +||.+|++|=+
T Consensus 7 m~i~~isD~H~-----~~~~~~~~~~~~~~-~~d~i~~~GD~ 42 (176)
T 3ck2_A 7 QTIIVMSDSHG-----DSLIVEEVRDRYVG-KVDAVFHNGDS 42 (176)
T ss_dssp EEEEEECCCTT-----CHHHHHHHHHHHTT-TSSEEEECSCC
T ss_pred cEEEEEecCCC-----CHHHHHHHHHHhhc-CCCEEEECCCC
Confidence 67888876652 35778899998877 99999999953
No 34
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=78.91 E-value=0.69 Score=33.96 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=31.2
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.+..++++..+...|-++.+|
T Consensus 13 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 46 (300)
T 3eb2_A 13 VSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLG 46 (300)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTS
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4599999999999999999999999999888887
No 35
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=78.86 E-value=1.5 Score=33.57 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=32.0
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+.++||+.|..++++..+...|-++.+|
T Consensus 68 vTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~G 101 (360)
T 4dpp_A 68 KTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGG 101 (360)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecc
Confidence 5799999999999999999999999999999988
No 36
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=78.80 E-value=0.99 Score=33.35 Aligned_cols=34 Identities=15% Similarity=0.418 Sum_probs=31.2
Q ss_pred eCCCCC-CCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQ-SDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~-~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+. +.++||+.|..++++..+...|-++.+|
T Consensus 20 vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 54 (316)
T 3e96_A 20 ITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCG 54 (316)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTS
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 369998 8899999999999999999999999887
No 37
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=77.66 E-value=4 Score=27.44 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=31.9
Q ss_pred eeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 8 l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
++|++.|--- -+++.|..+++.+++.+||.+|++|=++|
T Consensus 26 m~i~~iSD~H-----g~~~~l~~~l~~~~~~~~D~ii~~GDl~~ 64 (190)
T 1s3l_A 26 MKIGIMSDTH-----DHLPNIRKAIEIFNDENVETVIHCGDFVS 64 (190)
T ss_dssp CEEEEECCCT-----TCHHHHHHHHHHHHHSCCSEEEECSCCCS
T ss_pred eEEEEEeeCC-----CCHHHHHHHHHHHhhcCCCEEEECCCCCC
Confidence 6777776544 24678899999999999999999999876
No 38
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=76.89 E-value=1.1 Score=33.17 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=31.4
Q ss_pred eCCCC-CCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYT-QSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT-~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+ .+.++||+-|..++++..+...|-++.+|
T Consensus 19 vTPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 53 (318)
T 3qfe_A 19 VTFFDSKTDTLDLASQERYYAYLARSGLTGLVILG 53 (318)
T ss_dssp CCCEETTTTEECHHHHHHHHHHHHTTTCSEEEESS
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 56999 78899999999999999999999999988
No 39
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=76.67 E-value=1.1 Score=32.65 Aligned_cols=33 Identities=15% Similarity=0.465 Sum_probs=30.6
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=||+.+ ++||+.+..++++..+...|-++.+|
T Consensus 12 vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~G 44 (292)
T 3daq_A 12 TTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNG 44 (292)
T ss_dssp CCCEETT-EECHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3599988 99999999999999999999999988
No 40
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=76.55 E-value=2.5 Score=30.41 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=26.7
Q ss_pred chHHHHHHHHhhCCCCEEEeecc-ccCCCCcc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGP-LLDTSHPL 56 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GP-FiD~~h~~ 56 (86)
+-|..+++.+++.+||+||+.|= ++|...|.
T Consensus 48 ~~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~ 79 (336)
T 2q8u_A 48 KALDKVVEEAEKREVDLILLTGDLLHSRNNPS 79 (336)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCSBSCSSCCC
T ss_pred HHHHHHHHHHHHhCCCEEEECCccccCCCCCC
Confidence 45889999999999999999999 99977653
No 41
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=75.36 E-value=2.5 Score=31.37 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=27.0
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
+-|..+++.+++.+||+||+.|=++|...|.
T Consensus 47 ~~l~~~v~~~~~~~~D~VliaGDl~d~~~p~ 77 (386)
T 3av0_A 47 DSFKLCIKKILEIKPDVVLHSGDLFNDLRPP 77 (386)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCSBSSSSCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCC
Confidence 3588999999999999999999999987653
No 42
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=72.56 E-value=3.9 Score=31.75 Aligned_cols=53 Identities=13% Similarity=0.443 Sum_probs=37.5
Q ss_pred CCceeEEEEeCCC----CCCCCC---CCchHHHHHHHHhhCCCCEEEeeccccCCCCccc
Q psy149 5 RRSLSMFVSAGPY----TQSDTL---SYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLL 57 (86)
Q Consensus 5 ~~~l~i~vAaGPf----T~~d~l---~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i 57 (86)
.++++++.+|=-= ...... .++-|..+++.+++.+||.||+.|=++|...|..
T Consensus 11 ~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~~ 70 (417)
T 4fbw_A 11 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSR 70 (417)
T ss_dssp TTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCH
T ss_pred CCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCH
Confidence 3567887775321 111111 2345789999999999999999999999988753
No 43
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=71.65 E-value=4.2 Score=31.70 Aligned_cols=51 Identities=18% Similarity=0.425 Sum_probs=36.0
Q ss_pred CceeEEEEeC----CCCCCCCC---CCchHHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 6 RSLSMFVSAG----PYTQSDTL---SYKPLEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 6 ~~l~i~vAaG----PfT~~d~l---~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
++++|+.+|= ........ .++-|..+++.+++.+||+||+.|=++|...|.
T Consensus 31 ~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~~ 88 (431)
T 3t1i_A 31 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPS 88 (431)
T ss_dssp GEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCC
T ss_pred CCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCCC
Confidence 4677777653 22221111 124678899999999999999999999988764
No 44
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=70.71 E-value=4.4 Score=32.18 Aligned_cols=53 Identities=13% Similarity=0.405 Sum_probs=37.4
Q ss_pred CCceeEEEEe----CCCCCCCCC---CCchHHHHHHHHhhCCCCEEEeeccccCCCCccc
Q psy149 5 RRSLSMFVSA----GPYTQSDTL---SYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLL 57 (86)
Q Consensus 5 ~~~l~i~vAa----GPfT~~d~l---~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i 57 (86)
..+++|+.+| |........ .++-|..+++.+++.+||.||+.|=++|...|..
T Consensus 74 ~~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~ps~ 133 (472)
T 4fbk_A 74 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSR 133 (472)
T ss_dssp TTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCSBSSSSCCH
T ss_pred CCCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCH
Confidence 3567777765 222211111 2345789999999999999999999999988753
No 45
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=69.76 E-value=10 Score=25.73 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=24.1
Q ss_pred chHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 26 KPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
+-|..+++.+++.+||.||++|=++|...
T Consensus 38 ~~l~~~~~~~~~~~~d~vi~~GD~~~~~~ 66 (322)
T 2nxf_A 38 DLLRDAVLQWRRERVQCVVQLGDIIDGHN 66 (322)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSCCBCTHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccCCCC
Confidence 45778888888899999999999987543
No 46
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=68.94 E-value=1.9 Score=31.54 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=30.0
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=|| .+.++||+.+..++++..+...|-++.+|
T Consensus 10 vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~G 42 (297)
T 2rfg_A 10 ITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVG 42 (297)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSS
T ss_pred ecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3589 77889999999999999999999999988
No 47
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=68.49 E-value=1.7 Score=31.59 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=30.1
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=|| .+.++||+.+..++++..+...|-++.+|
T Consensus 10 vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~G 42 (292)
T 2vc6_A 10 VTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCG 42 (292)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTS
T ss_pred ecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3589 77899999999999999999999999988
No 48
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=67.62 E-value=2.1 Score=31.33 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=30.4
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
-=|| .+.++||+.|..++++..+...|-++.+|
T Consensus 17 vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 49 (301)
T 3m5v_A 17 ITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVG 49 (301)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSS
T ss_pred ecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4699 78899999999999999999999999987
No 49
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=66.54 E-value=3.7 Score=27.90 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=31.4
Q ss_pred eeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 8 l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+++++.|--- .+++.|..+++.+++.+||.+|++|=++|.
T Consensus 26 mki~~iSD~H-----~~~~~l~~~l~~~~~~~~d~vi~~GDl~~~ 65 (208)
T 1su1_A 26 MKLMFASDIH-----GSLPATERVLELFAQSGAQWLVILGDVLNH 65 (208)
T ss_dssp CEEEEECCCT-----TBHHHHHHHHHHHHHHTCSEEEECSCCSCC
T ss_pred EEEEEEEcCC-----CCHHHHHHHHHHHHhcCCCEEEECCCcccc
Confidence 4666655322 456789999999988899999999999985
No 50
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=65.30 E-value=5.8 Score=29.44 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhCCCCEEEeecccc-CCCCcc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLL-DTSHPL 56 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFi-D~~h~~ 56 (86)
-|..+++.+++.+||+||+.|=++ |...|.
T Consensus 31 ~l~~l~~~~~~~~~D~vliaGDl~hd~~~~~ 61 (379)
T 3tho_B 31 ALDKVVEEAEKREVDLILLTGDLLHSRNNPS 61 (379)
T ss_dssp HHHHHHHHHHHHTCSEEEECSCCBSCSSSCC
T ss_pred HHHHHHHHHHhcCCCEEEECCCccccCCCCC
Confidence 577888888899999999999999 876654
No 51
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=60.45 E-value=7 Score=27.69 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=32.4
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+++|.|-|==- -++..|..+++.+++.+||.+|++|=++|.
T Consensus 11 ~~~i~~iSDiH-----g~~~~l~~vl~~~~~~~~D~ii~~GDlv~~ 51 (270)
T 3qfm_A 11 MTKIALLSDIH-----GNTTALEAVLADARQLGVDEYWLLGDILMP 51 (270)
T ss_dssp CEEEEEECCCT-----TCHHHHHHHHHHHHHTTCCEEEECSCCSSS
T ss_pred ccEEEEEecCC-----CCHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 45666665332 346889999999999999999999999985
No 52
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=55.17 E-value=8.7 Score=28.36 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCCCEEEeecccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFi 50 (86)
+..+.+.+++.|||+++..|.+.
T Consensus 100 ~~~l~~~l~~~kPDvVi~~g~~~ 122 (396)
T 3dzc_A 100 LLGMQQVLSSEQPDVVLVHGDTA 122 (396)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSH
T ss_pred HHHHHHHHHhcCCCEEEEECCch
Confidence 34566667789999999999654
No 53
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*
Probab=54.80 E-value=9.1 Score=27.20 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=15.1
Q ss_pred HHHHHHHHhhCCCCEEEeecc
Q psy149 28 LEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GP 48 (86)
+.++-+.+.+.+||++|++||
T Consensus 31 ~~~~~~~l~~~~Pd~ivvis~ 51 (271)
T 3vsj_A 31 TERAGKALAASRPDVVLVYST 51 (271)
T ss_dssp HHHHHHHHHHTCCSEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEcC
Confidence 344445555579999999987
No 54
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=53.47 E-value=8 Score=26.13 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHh---hC--CCCEEEeeccccCC
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTV---QQ--EPDVLILIGPLLDT 52 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~---~~--~PdvlIL~GPFiD~ 52 (86)
+|++.|--- .++..|..+++.++ .. +||.+|++|=++|.
T Consensus 3 ~i~~isD~H-----~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~ 46 (252)
T 1nnw_A 3 YVAVLANIA-----GNLPALTAALSRIEEMREEGYEIEKYYILGNIVGL 46 (252)
T ss_dssp EEEEEECCT-----TCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSS
T ss_pred EEEEEeecC-----CCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCC
Confidence 455555333 24567889999988 76 89999999999875
No 55
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=52.48 E-value=9.9 Score=26.75 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHhhCCC-CEEEeeccccCCC
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTVQQEP-DVLILIGPLLDTS 53 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~P-dvlIL~GPFiD~~ 53 (86)
+|++.+--- -+++.|..+++.+...++ |.+|++|=++|..
T Consensus 20 ~i~visDiH-----g~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g 60 (262)
T 2qjc_A 20 RVIIVGDIH-----GCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKG 60 (262)
T ss_dssp CEEEECCCT-----TCHHHHHHHHHHHTCCTTTSEEEECSCCSSSS
T ss_pred eEEEEeCCC-----CCHHHHHHHHHHHhccCCCCEEEEecCCCCCC
Confidence 555555322 246789999999888776 9999999999854
No 56
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=51.75 E-value=20 Score=24.48 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=29.4
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~ 53 (86)
.++|++.|--- -++..|..+++.+. +||.+|++|=++|..
T Consensus 3 ~mri~~isDiH-----g~~~~l~~~l~~~~--~~d~ii~~GDl~~~g 42 (246)
T 3rqz_A 3 AMRILIISDVH-----ANLVALEAVLSDAG--RVDDIWSLGDIVGYG 42 (246)
T ss_dssp CCCEEEECCCT-----TCHHHHHHHHHHHC--SCSEEEECSCCSSSS
T ss_pred CcEEEEEeecC-----CCHHHHHHHHHhcc--CCCEEEECCCcCCCC
Confidence 45666655433 35577888888887 999999999998854
No 57
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=51.20 E-value=11 Score=25.27 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhC-CCCEEEeeccccCCC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQ-EPDVLILIGPLLDTS 53 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~-~PdvlIL~GPFiD~~ 53 (86)
.++|.|.|--- -+++.|..+++.+... ++|.+|.+|=++|..
T Consensus 12 ~~~i~visDiH-----g~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g 54 (221)
T 1g5b_A 12 YRNIWVVGDLH-----GCYTNLMNKLDTIGFDNKKDLLISVGDLVDRG 54 (221)
T ss_dssp CSCEEEECCCT-----TCHHHHHHHHHHHTCCTTTCEEEECSCCSSSS
T ss_pred CceEEEEEcCC-----CCHHHHHHHHHHccCCCCCCEEEEeCCccCCC
Confidence 35566655322 2467888899888764 799999999999843
No 58
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=50.23 E-value=13 Score=24.77 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=20.4
Q ss_pred cCCCceeEEEEeCCCCCCCC-CCCchHHHHH
Q psy149 3 LTRRSLSMFVSAGPYTQSDT-LSYKPLEDLI 32 (86)
Q Consensus 3 l~~~~l~i~vAaGPfT~~d~-l~y~pL~~ll 32 (86)
+..+.+-+++|+|||..+|- -+|+-+.+.+
T Consensus 102 ~s~~avllvlas~~Yd~~dyir~y~~f~~~~ 132 (141)
T 2pa7_A 102 FSSDCVMMVLASDYYDETDYIRQYDNFKKYI 132 (141)
T ss_dssp CCTTCEEEEEESSCCCGGGEECCHHHHHHHH
T ss_pred cCCCeEEEEECCCCcCHHHeeecHHHHHHHH
Confidence 44568889999999988764 4454444433
No 59
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=50.06 E-value=12 Score=27.87 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=17.7
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
-+..+-+.+++.|||+++..|..
T Consensus 82 ~~~~l~~~l~~~kPD~Vlv~gd~ 104 (385)
T 4hwg_A 82 VIEKVDEVLEKEKPDAVLFYGDT 104 (385)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCS
T ss_pred HHHHHHHHHHhcCCcEEEEECCc
Confidence 34556666778999999999965
No 60
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=49.29 E-value=17 Score=25.04 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=33.6
Q ss_pred CCceeEEEEeCCCCCC-CC------CCCchHHHHHHHHhh--CCCCEEEeeccccCCCC
Q psy149 5 RRSLSMFVSAGPYTQS-DT------LSYKPLEDLIALTVQ--QEPDVLILIGPLLDTSH 54 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~-d~------l~y~pL~~ll~~v~~--~~PdvlIL~GPFiD~~h 54 (86)
..+++|++.|=.=-.. .. -..+-|..+++.+++ .+||.+|+.|=++|...
T Consensus 23 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~ 81 (330)
T 3ib7_A 23 RPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGE 81 (330)
T ss_dssp CCSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCC
T ss_pred CCCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCC
Confidence 3467777765332111 11 124578889999998 89999999998887544
No 61
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=49.21 E-value=12 Score=27.73 Aligned_cols=22 Identities=14% Similarity=0.481 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
+..+.+.+++.|||+++..|.+
T Consensus 103 ~~~l~~~l~~~kPD~Vi~~gd~ 124 (403)
T 3ot5_A 103 MNGINEVIAAENPDIVLVHGDT 124 (403)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC
T ss_pred HHHHHHHHHHcCCCEEEEECCc
Confidence 3445666778999999999853
No 62
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=47.86 E-value=40 Score=19.95 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=37.4
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhh-CC-CCEEEeeccccCCCCccccCCCcCCCHHHHHHHH
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ-QE-PDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKL 73 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~-~~-PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~ 73 (86)
.+-+++.+|||+++. .++.|.-....... .. +-.++++|.=+..-.+..+... ...+.+.++..
T Consensus 3 k~~ii~~~~p~~~~~--~~~al~~a~~~~~~~g~~~v~vff~~dgV~~~~~~~~~~~-~~~~~~~l~~l 68 (117)
T 1jx7_A 3 KIVIVANGAPYGSES--LFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPGE-GYNIQQMLEIL 68 (117)
T ss_dssp EEEEEECCCTTTCSH--HHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGBSCCCCSS-SCCHHHHHHHH
T ss_pred EEEEEEcCCCCCcHH--HHHHHHHHHHHHhcCCCccEEEEEEchHHHHHhcCCCCCc-CCCHHHHHHHH
Confidence 478999999996552 33444433433333 33 4488888887766554322111 25666666655
No 63
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=47.55 E-value=14 Score=26.79 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=17.4
Q ss_pred HHHHHHhhCCCCEEEeeccccC
Q psy149 30 DLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPFiD 51 (86)
.....+++.+||+||-.|.++.
T Consensus 83 ~~~~~l~~~~PDvVi~~g~~~s 104 (365)
T 3s2u_A 83 QALRVIRQLRPVCVLGLGGYVT 104 (365)
T ss_dssp HHHHHHHHHCCSEEEECSSSTH
T ss_pred HHHHHHHhcCCCEEEEcCCcch
Confidence 3345677899999999998865
No 64
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=46.17 E-value=16 Score=26.88 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.4
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCC
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTS 53 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~ 53 (86)
.+-|..+++.+++.+||.+|+.|=++|..
T Consensus 78 ~~~l~~~~~~~~~~~~d~vi~~GDl~~~~ 106 (443)
T 2xmo_A 78 DEITDAFLADVESKKTDVLIISGDLTNNG 106 (443)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCCBSSC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 45678888889889999999999988754
No 65
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=44.85 E-value=19 Score=20.84 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=15.2
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 35 ~~~~a~~~l~~~~~dlii~ 53 (127)
T 3i42_A 35 SGTDALHAMSTRGYDAVFI 53 (127)
T ss_dssp SHHHHHHHHHHSCCSEEEE
T ss_pred CHHHHHHHHHhcCCCEEEE
Confidence 3567888888899998886
No 66
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=44.61 E-value=14 Score=23.74 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.0
Q ss_pred CchHHHHHHHHhhCCCCEEEeec
Q psy149 25 YKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+.|.+++++.+.+.+||++.|..
T Consensus 40 ~~p~e~~v~~a~~~~~d~v~lS~ 62 (137)
T 1ccw_A 40 LSPQELFIKAAIETKADAILVSS 62 (137)
T ss_dssp EECHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEEe
Confidence 35889999999999999888853
No 67
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=43.60 E-value=35 Score=23.42 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
|+.+.+++.. .+-+.+...++++.+.+.++|.+|++|.
T Consensus 41 g~~v~l~~~~------~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 41 GKNLEFDYKT------AQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp TTTEEEEEEE------CTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred CCceEEEEec------CCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 4455665542 1234456778889999999999999874
No 68
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A*
Probab=42.86 E-value=49 Score=27.40 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=31.5
Q ss_pred CCCCCch---HHHHHHHHhhCCCCEEEeeccccCCCCc
Q psy149 21 DTLSYKP---LEDLIALTVQQEPDVLILIGPLLDTSHP 55 (86)
Q Consensus 21 d~l~y~p---L~~ll~~v~~~~PdvlIL~GPFiD~~h~ 55 (86)
...+|+- |..|++.+.+..-.|++-.||+|-++-+
T Consensus 71 G~fdF~g~~DL~~fl~~a~~~GL~ViLr~GPyi~aEw~ 108 (654)
T 3thd_A 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWE 108 (654)
T ss_dssp TBCCCSGGGCHHHHHHHHHHTTCEEEEECCSCCCTTBG
T ss_pred CccCccchHHHHHHHHHHHHcCCEEEeccCCccccccC
Confidence 4678888 9999999999999999999999998864
No 69
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=42.70 E-value=21 Score=20.72 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 35 ~~~al~~~~~~~~dlii~ 52 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILL 52 (120)
T ss_dssp HHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHhhCCCCEEEE
Confidence 467788888899998887
No 70
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A
Probab=42.43 E-value=68 Score=26.23 Aligned_cols=34 Identities=9% Similarity=0.250 Sum_probs=30.9
Q ss_pred CCCCCch---HHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 21 DTLSYKP---LEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 21 d~l~y~p---L~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
...+|+- |..|++.+.+..-.|++..||+|-++-
T Consensus 63 G~fdF~g~~dL~~fl~~a~~~Gl~VilrpGPYi~aEw 99 (595)
T 4e8d_A 63 GEFHFEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEW 99 (595)
T ss_dssp TBCCCSGGGCHHHHHHHHHHTTCEEEEECCSCCCTTB
T ss_pred CeecccchhhHHHHHHHHHHcCCEEEEecCCceeccc
Confidence 4678888 999999999999999999999999885
No 71
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=42.23 E-value=27 Score=23.23 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=23.1
Q ss_pred chHHHHHHHHhhC--CCCEEEeeccccCCC
Q psy149 26 KPLEDLIALTVQQ--EPDVLILIGPLLDTS 53 (86)
Q Consensus 26 ~pL~~ll~~v~~~--~PdvlIL~GPFiD~~ 53 (86)
+-|..+++.+++. +||.+|+.|=++|..
T Consensus 26 ~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~ 55 (274)
T 3d03_A 26 AANADVVSQLNALRERPDAVVVSGDIVNCG 55 (274)
T ss_dssp HHHHHHHHHHHTCSSCCSEEEEESCCBSSC
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCCCCC
Confidence 5688888888875 689999999988754
No 72
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=42.07 E-value=24 Score=20.77 Aligned_cols=19 Identities=0% Similarity=0.062 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 38 ~~~~a~~~l~~~~~dlvi~ 56 (140)
T 3grc_A 38 SAAQALEQVARRPYAAMTV 56 (140)
T ss_dssp SHHHHHHHHHHSCCSEEEE
T ss_pred CHHHHHHHHHhCCCCEEEE
Confidence 3567778888888998876
No 73
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=41.94 E-value=25 Score=20.46 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=11.5
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 36 ~~~a~~~l~~~~~dlvi~ 53 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLIS 53 (133)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 455666666667776665
No 74
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=41.90 E-value=19 Score=23.83 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.6
Q ss_pred CchHHHHHHHHhhCCCCEEEee
Q psy149 25 YKPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+.|..++++.+.+.+||++.|.
T Consensus 55 ~~p~e~lv~aa~~~~~diV~lS 76 (161)
T 2yxb_A 55 RQTPEQVAMAAVQEDVDVIGVS 76 (161)
T ss_dssp BCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEE
Confidence 4689999999999999999884
No 75
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=41.21 E-value=21 Score=20.89 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 35 ~~~al~~l~~~~~dlvll 52 (122)
T 3gl9_A 35 GQIALEKLSEFTPDLIVL 52 (122)
T ss_dssp HHHHHHHHTTBCCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 467788888899998887
No 76
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=40.41 E-value=48 Score=21.09 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=10.7
Q ss_pred HHHHHhhCCCCEEEee
Q psy149 31 LIALTVQQEPDVLILI 46 (86)
Q Consensus 31 ll~~v~~~~PdvlIL~ 46 (86)
+-+.+.+.+||+++++
T Consensus 66 ~~~~~~~~~pd~Vvi~ 81 (200)
T 4h08_A 66 LAVVLKNTKFDVIHFN 81 (200)
T ss_dssp HHHHHHHSCCSEEEEC
T ss_pred HHHHHhcCCCCeEEEE
Confidence 3344567899988763
No 77
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=40.21 E-value=25 Score=20.43 Aligned_cols=19 Identities=21% Similarity=0.041 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 38 ~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 38 NGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp SHHHHHHHHHHTCCSEEEE
T ss_pred CHHHHHHHHHhcCCCEEEE
Confidence 3567778888889998776
No 78
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=40.15 E-value=23 Score=20.61 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.4
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 39 ~~~~a~~~l~~~~~dlvi~ 57 (130)
T 3eod_A 39 DGVDALELLGGFTPDLMIC 57 (130)
T ss_dssp CHHHHHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHhcCCCCEEEE
Confidence 4567888888899998887
No 79
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=39.95 E-value=20 Score=26.20 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHh----h--CCCCEEEeecc
Q psy149 24 SYKPLEDLIALTV----Q--QEPDVLILIGP 48 (86)
Q Consensus 24 ~y~pL~~ll~~v~----~--~~PdvlIL~GP 48 (86)
-.+++.+-++.+. + .+||++|++||
T Consensus 29 ~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~ 59 (302)
T 1b4u_B 29 YWGPVFKGYQPIRDWIKQPGNMPDVVILVYN 59 (302)
T ss_dssp TTHHHHHHHHHHHHHHTSTTTSCSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 3455555555554 3 58999999999
No 80
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=39.46 E-value=21 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhCCCCEEEee
Q psy149 27 PLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~ 46 (86)
.+..+.+.+++.+||||.|-
T Consensus 22 r~~~i~~~i~~~~pDIi~LQ 41 (250)
T 4f1h_A 22 RARGLCSYLALYTPDVVFLQ 41 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 36778889999999999883
No 81
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=39.24 E-value=29 Score=20.78 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=18.2
Q ss_pred chHHHHHHHHhhCCCCEEEee
Q psy149 26 KPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+|-..+++++++.++|++|+=
T Consensus 86 ~~~~~I~~~a~~~~~dliV~G 106 (137)
T 2z08_A 86 VPAEAILQAARAEKADLIVMG 106 (137)
T ss_dssp SHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEC
Confidence 488899999999999988873
No 82
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=38.62 E-value=26 Score=21.08 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.4
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 54 ~~~~al~~l~~~~~dlii~ 72 (150)
T 4e7p_A 54 NGQEAIQLLEKESVDIAIL 72 (150)
T ss_dssp SHHHHHHHHTTSCCSEEEE
T ss_pred CHHHHHHHhhccCCCEEEE
Confidence 4578888888889998876
No 83
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=38.56 E-value=19 Score=25.88 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCchHHHHHHHHhh-CCCCEEEeeccccCCC
Q psy149 24 SYKPLEDLIALTVQ-QEPDVLILIGPLLDTS 53 (86)
Q Consensus 24 ~y~pL~~ll~~v~~-~~PdvlIL~GPFiD~~ 53 (86)
.|..|..+++.+.. .++|.+|++|=++|.-
T Consensus 12 ~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG 42 (280)
T 2dfj_A 12 CYDELIALLHKVEFTPGKDTLWLTGDLVARG 42 (280)
T ss_dssp CHHHHHHHHHHTTCCTTTCEEEECSCCSSSS
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEeCCcCCCC
Confidence 46788899988876 5789999999999854
No 84
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=38.20 E-value=30 Score=24.16 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=16.0
Q ss_pred HHHHHHHhhCCCCEEEeecc
Q psy149 29 EDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GP 48 (86)
..+.+.+++.+||+++..|+
T Consensus 81 ~~l~~~l~~~~pDvv~~~~~ 100 (376)
T 1v4v_A 81 PQAARALKEMGADYVLVHGD 100 (376)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHcCCCEEEEeCC
Confidence 35667777899999999875
No 85
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=38.18 E-value=22 Score=20.88 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=15.8
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.-..+.++.+.+.+||++|+
T Consensus 38 ~~~~~a~~~l~~~~~dlvi~ 57 (137)
T 3hdg_A 38 GDGEEGERLFGLHAPDVIIT 57 (137)
T ss_dssp SSHHHHHHHHHHHCCSEEEE
T ss_pred CCHHHHHHHHhccCCCEEEE
Confidence 34677888888889998887
No 86
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=38.11 E-value=31 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.1
Q ss_pred chHHHHHHHHhhCCCCEEEee
Q psy149 26 KPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~ 46 (86)
.|-..+++++++.+.|++||=
T Consensus 93 ~~~~~I~~~a~~~~~dliV~G 113 (143)
T 3fdx_A 93 SPKDKILALAKSLPADLVIIA 113 (143)
T ss_dssp CHHHHHHHHHHHTTCSEEEEE
T ss_pred ChHHHHHHHHHHhCCCEEEEe
Confidence 388999999999999988764
No 87
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=37.72 E-value=41 Score=22.90 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHhhCCCCEEEeecc
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
+.+....+++.+.+.+||.+|++|.
T Consensus 47 ~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 47 DQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp CHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCc
Confidence 3456778888888999999999874
No 88
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=37.63 E-value=28 Score=20.68 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=14.3
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
-.+.++.+.+.+||++|+
T Consensus 37 ~~~al~~~~~~~~dlvl~ 54 (136)
T 3t6k_A 37 GEEALQQIYKNLPDALIC 54 (136)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 467778888889998876
No 89
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=37.44 E-value=30 Score=19.52 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=13.0
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 34 ~~~a~~~~~~~~~dlvl~ 51 (116)
T 3a10_A 34 GEEALKKFFSGNYDLVIL 51 (116)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 456667777788887776
No 90
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=37.27 E-value=25 Score=24.76 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=17.1
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++|+.|
T Consensus 71 ~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 71 IEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 4789999999999999987
No 91
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=36.43 E-value=26 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCCEEEeecc
Q psy149 29 EDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GP 48 (86)
.++++.+++.+||++++.|=
T Consensus 91 ~~~~~~l~~~~~Dliv~agy 110 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLAGY 110 (229)
T ss_dssp HHHHHHHHHTTCSEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEcCh
Confidence 46889999999999999873
No 92
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=36.41 E-value=35 Score=20.44 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=17.7
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.+.|++|+
T Consensus 97 ~~~~~I~~~a~~~~~dliV~ 116 (147)
T 3hgm_A 97 RPSRTIVRFARKRECDLVVI 116 (147)
T ss_dssp CHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHhCCCEEEE
Confidence 48899999999999998876
No 93
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=36.36 E-value=27 Score=24.61 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++++.|
T Consensus 73 ~~~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 73 STLQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEcc
Confidence 4789999999999999987
No 94
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=36.33 E-value=31 Score=20.16 Aligned_cols=20 Identities=30% Similarity=0.205 Sum_probs=15.4
Q ss_pred hHHHHHHHHhhCCCCEEEee
Q psy149 27 PLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~ 46 (86)
-..+.++.+.+.+||++|+=
T Consensus 42 ~~~~a~~~l~~~~~dlii~d 61 (143)
T 3cnb_A 42 NPFDAGDLLHTVKPDVVMLD 61 (143)
T ss_dssp SHHHHHHHHHHTCCSEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEe
Confidence 45677888888889988763
No 95
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=36.22 E-value=21 Score=24.75 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.8
Q ss_pred chHHHHHHHHhhCCCCEEEeec
Q psy149 26 KPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~G 47 (86)
.|..++++.+.+.+||++.|.|
T Consensus 130 vp~e~iv~~~~~~~~d~v~l~~ 151 (215)
T 3ezx_A 130 VLNENVVEEAAKHKGEKVLLVG 151 (215)
T ss_dssp CCHHHHHHHHHHTTTSCEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEEc
Confidence 5999999999999999998844
No 96
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=36.19 E-value=25 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=17.3
Q ss_pred hHHHHHHHHhhCCCCEEEeec
Q psy149 27 PLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~G 47 (86)
.+..+.+.+++.+||||.|--
T Consensus 32 r~~~i~~~i~~~~pDIi~LQE 52 (256)
T 4fva_A 32 RMKAVAHIVKNVNPDILFLQE 52 (256)
T ss_dssp HHHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEe
Confidence 456788899999999999854
No 97
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=36.12 E-value=29 Score=22.65 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.4
Q ss_pred hHHHHHHHHhhCCCCEEEeecc
Q psy149 27 PLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.+..+.+.+++.+|||+.|---
T Consensus 14 ~~~~i~~~i~~~~~DIv~LQE~ 35 (256)
T 2jc4_A 14 RLPQVQNLLADNPPDILVLQEL 35 (256)
T ss_dssp HHHHHHHHHHSSCCSEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEEee
Confidence 5678889999999999999654
No 98
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=36.03 E-value=27 Score=24.20 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCCEEEeec
Q psy149 30 DLIALTVQQEPDVLILIG 47 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~G 47 (86)
++++.+++.+||++++.|
T Consensus 73 ~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 73 EILRELKGRQIDWIALAG 90 (212)
T ss_dssp HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHhcCCCEEEEch
Confidence 788999999999999988
No 99
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=35.90 E-value=35 Score=20.37 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=17.7
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.+.|++|+
T Consensus 89 ~~~~~I~~~a~~~~~dliV~ 108 (141)
T 1jmv_A 89 DLGQVLSDAIEQYDVDLLVT 108 (141)
T ss_dssp CHHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHhcCCCEEEE
Confidence 48899999999999998887
No 100
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=35.78 E-value=32 Score=20.36 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=14.6
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 42 ~~~~al~~l~~~~~dlvll 60 (140)
T 3c97_A 42 NGLQALQAYQNRQFDVIIM 60 (140)
T ss_dssp SHHHHHHHHHHSCCSEEEE
T ss_pred CHHHHHHHHhcCCCCEEEE
Confidence 3567777888888998876
No 101
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=35.78 E-value=27 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCCEEEeecc
Q psy149 29 EDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GP 48 (86)
.++++.+++.+||++++.|=
T Consensus 70 ~~~~~~l~~~~~Dliv~a~y 89 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAGF 89 (216)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEeCc
Confidence 46889999999999999873
No 102
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=35.67 E-value=28 Score=24.26 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++++.|
T Consensus 69 ~~~~~~l~~~~~Dliv~ag 87 (212)
T 1jkx_A 69 RELIHEIDMYAPDVVVLAG 87 (212)
T ss_dssp HHHHHHHGGGCCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 4688999999999999987
No 103
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=35.52 E-value=28 Score=24.49 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=17.5
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++++.|
T Consensus 72 ~~~~~~L~~~~~Dlivlag 90 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAG 90 (215)
T ss_dssp HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHHhCCCEEEEeC
Confidence 6899999999999999987
No 104
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=35.49 E-value=36 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=17.8
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.+.|++|+
T Consensus 96 ~~~~~I~~~a~~~~~dliV~ 115 (150)
T 3tnj_A 96 EPREEIIRIAEQENVDLIVV 115 (150)
T ss_dssp CHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEE
Confidence 47899999999999998887
No 105
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=35.45 E-value=26 Score=22.52 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhCCCCEEEee
Q psy149 27 PLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~ 46 (86)
.+..+++.+++.+|||+.|-
T Consensus 28 r~~~i~~~i~~~~pDIi~LQ 47 (256)
T 4gz1_A 28 RARGVCSCLALYSPDVVFLQ 47 (256)
T ss_dssp HHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 36778899999999999884
No 106
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.43 E-value=34 Score=20.59 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 46 ~~~~a~~~l~~~~~dlvi~ 64 (153)
T 3hv2_A 46 DATQALQLLASREVDLVIS 64 (153)
T ss_dssp SHHHHHHHHHHSCCSEEEE
T ss_pred CHHHHHHHHHcCCCCEEEE
Confidence 4567777778888888876
No 107
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=35.36 E-value=36 Score=20.94 Aligned_cols=20 Identities=20% Similarity=0.572 Sum_probs=17.4
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.++|++|+
T Consensus 107 ~~~~~I~~~a~~~~~dlIV~ 126 (162)
T 1mjh_A 107 IPHEEIVKIAEDEGVDIIIM 126 (162)
T ss_dssp CHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEE
Confidence 37889999999999998877
No 108
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=35.34 E-value=26 Score=20.65 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=12.9
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 38 ~~~al~~~~~~~~dlvil 55 (133)
T 3b2n_A 38 GLDAMKLIEEYNPNVVIL 55 (133)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHhhcCCCEEEE
Confidence 456677777778887775
No 109
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=35.17 E-value=30 Score=20.54 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 39 ~~~~a~~~l~~~~~dlii~ 57 (144)
T 3kht_A 39 NGAKALYQVQQAKYDLIIL 57 (144)
T ss_dssp SHHHHHHHHTTCCCSEEEE
T ss_pred CHHHHHHHhhcCCCCEEEE
Confidence 4567788888888998776
No 110
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=35.07 E-value=28 Score=20.51 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=11.4
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 35 ~~~a~~~~~~~~~dlvi~ 52 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVIL 52 (140)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 455666666667776665
No 111
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=35.04 E-value=29 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=15.6
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 39 ~~~~al~~l~~~~~dlii~ 57 (154)
T 3gt7_A 39 NGREAVRFLSLTRPDLIIS 57 (154)
T ss_dssp SHHHHHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHhCCCCEEEE
Confidence 4577888888899998887
No 112
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=34.97 E-value=35 Score=20.35 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=17.8
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.+.|++|+
T Consensus 96 ~~~~~I~~~a~~~~~dliV~ 115 (138)
T 1q77_A 96 PLSEEVKKFVEGKGYELVVW 115 (138)
T ss_dssp CHHHHHHHHHTTSCCSEEEE
T ss_pred CHHHHHHHHHHhcCCCEEEE
Confidence 48899999999999998877
No 113
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=34.56 E-value=34 Score=20.33 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=13.9
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 37 ~~~al~~~~~~~~dlvll 54 (136)
T 2qzj_A 37 CEEAIGKIFSNKYDLIFL 54 (136)
T ss_dssp HHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 466777788888998876
No 114
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=34.56 E-value=25 Score=24.68 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=17.4
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++++.|
T Consensus 76 ~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 76 DAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEec
Confidence 5788999999999999998
No 115
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=34.54 E-value=37 Score=21.28 Aligned_cols=20 Identities=10% Similarity=0.458 Sum_probs=18.4
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.+.|++|+
T Consensus 104 ~~~~~I~~~a~~~~~DLIV~ 123 (155)
T 3dlo_A 104 EPPDDIVDFADEVDAIAIVI 123 (155)
T ss_dssp CHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEE
Confidence 58899999999999999887
No 116
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=34.41 E-value=36 Score=19.42 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=14.1
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 36 ~~~a~~~~~~~~~dlvi~ 53 (123)
T 1xhf_A 36 GAEMHQILSEYDINLVIM 53 (123)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 467777888889998876
No 117
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=34.28 E-value=28 Score=19.71 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=13.7
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 38 ~~~a~~~~~~~~~dlvi~ 55 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVL 55 (127)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 466777777888998876
No 118
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=34.19 E-value=28 Score=22.87 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
++..+.+.+++.+|||+.|----
T Consensus 15 ~~~~i~~~i~~~~~Dii~lQE~~ 37 (257)
T 2voa_A 15 RLHIVIPWLKENKPDILCMQETK 37 (257)
T ss_dssp THHHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEEEee
Confidence 46788999999999999996653
No 119
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=33.92 E-value=30 Score=20.79 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=14.0
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 49 ~~~~a~~~l~~~~~dlii~ 67 (152)
T 3eul_A 49 DGAAALELIKAHLPDVALL 67 (152)
T ss_dssp SHHHHHHHHHHHCCSEEEE
T ss_pred CHHHHHHHHHhcCCCEEEE
Confidence 4567777777788888776
No 120
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=33.87 E-value=33 Score=23.86 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++++.|
T Consensus 69 ~~~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 69 SAIDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHhcCCCEEEEcc
Confidence 4688899999999999998
No 121
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=33.73 E-value=37 Score=19.19 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=14.2
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 32 ~~~~a~~~~~~~~~dlil~ 50 (121)
T 2pl1_A 32 DAKEADYYLNEHIPDIAIV 50 (121)
T ss_dssp SHHHHHHHHHHSCCSEEEE
T ss_pred CHHHHHHHHhccCCCEEEE
Confidence 3466777778888998875
No 122
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=33.68 E-value=25 Score=23.67 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=19.8
Q ss_pred chHHHHHHHHhhCCCCEEEeec
Q psy149 26 KPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~G 47 (86)
.|..++++.+++.+||++.|-.
T Consensus 126 vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 126 IEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp BCHHHHHHHHHHHCCSEEEEEC
T ss_pred CCHHHHHHHHHHcCCCEEEEec
Confidence 5899999999999999998854
No 123
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=33.67 E-value=33 Score=20.20 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=15.3
Q ss_pred hHHHHHHHHhhCCCCEEEee
Q psy149 27 PLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~ 46 (86)
-..+.++.+.+.+||++|+=
T Consensus 36 ~~~~a~~~l~~~~~dlvi~d 55 (142)
T 2qxy_A 36 NEQEAFTFLRREKIDLVFVD 55 (142)
T ss_dssp SHHHHHHHHTTSCCSEEEEE
T ss_pred CHHHHHHHHhccCCCEEEEe
Confidence 35677788888889988774
No 124
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=33.65 E-value=38 Score=21.38 Aligned_cols=20 Identities=25% Similarity=0.670 Sum_probs=17.9
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
+|-..+++++++.++|++|+
T Consensus 106 ~~~~~I~~~a~~~~~DLIV~ 125 (163)
T 1tq8_A 106 APVDALVNLADEEKADLLVV 125 (163)
T ss_dssp SHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHhcCCCEEEE
Confidence 48899999999999998887
No 125
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=33.64 E-value=29 Score=20.20 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=13.9
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 37 ~~~a~~~~~~~~~dlvll 54 (130)
T 1dz3_A 37 GQDCLQMLEEKRPDILLL 54 (130)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 467777777888998876
No 126
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=33.54 E-value=31 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=15.6
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.-..+.++.+.+.+||++|+
T Consensus 41 ~~~~~a~~~~~~~~~dlii~ 60 (140)
T 3cg0_A 41 DNGEEAVRCAPDLRPDIALV 60 (140)
T ss_dssp SSHHHHHHHHHHHCCSEEEE
T ss_pred CCHHHHHHHHHhCCCCEEEE
Confidence 34577888888888998886
No 127
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=33.35 E-value=33 Score=18.91 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=13.9
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 34 ~~~~~~~l~~~~~dlii~ 51 (119)
T 2j48_A 34 GSTALDQLDLLQPIVILM 51 (119)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 467777778888998876
No 128
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=33.32 E-value=64 Score=21.30 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=43.4
Q ss_pred cCCCceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCc--CCCHHHHHHHHHHHhhcc
Q psy149 3 LTRRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL--AETFEDFYVKLIDSIVQP 80 (86)
Q Consensus 3 l~~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~--~~t~eelF~~~i~~i~~~ 80 (86)
+.|++.-++.++|=.. .......|..++..+.-.-.... +..++.+. ...+|.+ ++...+-.++.+..+++.
T Consensus 108 l~gK~~~i~~t~gg~g--~~~~~~~l~~~l~~~G~~~v~~~-v~~~~~~~---~f~~g~~~~~~~~~~~l~~~~~~l~~~ 181 (192)
T 3fvw_A 108 LQDKIVTVSSVANGAS--PEEVFEDYRSLLPFIRMHLVDQL-TGVPINSE---AWSTGILKVSAEKLAELSAQADALLSA 181 (192)
T ss_dssp TTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCC-EEECCCTT---HHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCcc--hhHHHHHHHHHHHHcCCeeecce-eecccchh---hccCCccccCHHHHHHHHHHHHHHHHH
Confidence 5677888877777532 23345778888887754222211 12222221 1235655 456666678888888888
Q ss_pred ccCCCC
Q psy149 81 LEKPGH 86 (86)
Q Consensus 81 ~~~~g~ 86 (86)
+++.-|
T Consensus 182 ~~~~~~ 187 (192)
T 3fvw_A 182 IENLEH 187 (192)
T ss_dssp TTC---
T ss_pred HHhhhh
Confidence 876544
No 129
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.29 E-value=37 Score=20.02 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=13.4
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 43 ~~~~al~~l~~~~~dlvi~ 61 (143)
T 2qv0_A 43 DGLDVLKFLQHNKVDAIFL 61 (143)
T ss_dssp CHHHHHHHHHHCCCSEEEE
T ss_pred CHHHHHHHHHhCCCCEEEE
Confidence 3566777777777887775
No 130
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=33.23 E-value=36 Score=20.43 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=14.6
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 47 ~~~al~~~~~~~~dlvl~ 64 (143)
T 3m6m_D 47 AEQVLDAMAEEDYDAVIV 64 (143)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 467778888899998887
No 131
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=33.14 E-value=39 Score=19.23 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=13.7
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
-.+.++.+.+.+||++|+
T Consensus 35 ~~~~~~~~~~~~~dlvi~ 52 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILL 52 (122)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 356777777888998875
No 132
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=33.11 E-value=30 Score=19.86 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=13.5
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 36 ~~~a~~~~~~~~~dlvl~ 53 (124)
T 1srr_A 36 GLQALDIVTKERPDLVLL 53 (124)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHhccCCCEEEE
Confidence 456677777788998876
No 133
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=32.99 E-value=31 Score=24.24 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++++.|
T Consensus 79 ~~~~~~l~~~~~Dlivlag 97 (215)
T 3da8_A 79 VAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp HHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHhhCCCEEEEcC
Confidence 4688999999999999987
No 134
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=32.98 E-value=35 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 29 EDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
..|.+.+++.+||+|+-.-|.-...|
T Consensus 119 ~~l~~~ir~~rP~vV~t~~p~g~~~H 144 (303)
T 1q74_A 119 GALVAIIRELRPHVVVTYDPNGGYGH 144 (303)
T ss_dssp HHHHHHHHHHCCSEEEEECTTTTTCC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCC
Confidence 45556667799999998877643345
No 135
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=32.90 E-value=38 Score=19.82 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=15.1
Q ss_pred hHHHHHHHHhh-----CCCCEEEe
Q psy149 27 PLEDLIALTVQ-----QEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~-----~~PdvlIL 45 (86)
-..+.++.+.+ .+||++|+
T Consensus 43 ~~~~a~~~l~~~~~~~~~~dlvi~ 66 (146)
T 3ilh_A 43 SGNAAINKLNELYAAGRWPSIICI 66 (146)
T ss_dssp SHHHHHHHHHHHHTSSCCCSEEEE
T ss_pred CHHHHHHHHHHhhccCCCCCEEEE
Confidence 45677788887 88998887
No 136
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.90 E-value=31 Score=19.62 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 35 ~~~~a~~~~~~~~~dlil~ 53 (120)
T 1tmy_A 35 NGREAVEKYKELKPDIVTM 53 (120)
T ss_dssp SHHHHHHHHHHHCCSEEEE
T ss_pred CHHHHHHHHHhcCCCEEEE
Confidence 3467777788888998876
No 137
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=32.86 E-value=38 Score=19.83 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=13.6
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 36 ~~~al~~~~~~~~dlvl~ 53 (132)
T 3crn_A 36 AGEGLAKIENEFFNLALF 53 (132)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 456777777888998876
No 138
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=32.71 E-value=63 Score=24.25 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=20.3
Q ss_pred chHHHHHHHHhhCCCCE-EEeeccccC
Q psy149 26 KPLEDLIALTVQQEPDV-LILIGPLLD 51 (86)
Q Consensus 26 ~pL~~ll~~v~~~~Pdv-lIL~GPFiD 51 (86)
+-+..+++.+++..|++ +||++|+.-
T Consensus 268 ~~l~~li~~ir~~~P~a~Illv~p~~~ 294 (385)
T 3skv_A 268 ANLVGFVQIIRERHPLTPIVLGSSVYS 294 (385)
T ss_dssp HHHHHHHHHHHTTCSSSCEEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEEcCCCC
Confidence 45788999999988874 677888863
No 139
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=32.62 E-value=33 Score=23.89 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=16.3
Q ss_pred HHHHHHHhhCCCCEEEeecc
Q psy149 29 EDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GP 48 (86)
..+.+.+++.+||+++..|+
T Consensus 76 ~~l~~~l~~~~pDvv~~~~~ 95 (384)
T 1vgv_A 76 EGLKPILAEFKPDVVLVHGD 95 (384)
T ss_dssp HHHHHHHHHHCCSEEEEETT
T ss_pred HHHHHHHHHhCCCEEEEeCC
Confidence 45667778899999999875
No 140
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=32.50 E-value=39 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=15.8
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.-..+.++.+.+.+||++|+
T Consensus 38 ~~~~~a~~~~~~~~~dlvl~ 57 (129)
T 1p6q_A 38 GDGEQGMKIMAQNPHHLVIS 57 (129)
T ss_dssp SSHHHHHHHHHTSCCSEEEE
T ss_pred CCHHHHHHHHHcCCCCEEEE
Confidence 45677888888889998875
No 141
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=32.43 E-value=44 Score=23.09 Aligned_cols=34 Identities=9% Similarity=0.252 Sum_probs=23.3
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccc
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
|+.-.|... +-||++ .+.+++..+||++++.|..
T Consensus 173 v~~~~~~~~-~~d~~~---~l~~i~~~~~d~v~~~~~~ 206 (353)
T 4gnr_A 173 VADETFVAG-DTDFQA---ALTKMKGKDFDAIVVPGYY 206 (353)
T ss_dssp EEEEEECTT-CCCCHH---HHHHHHTSCCSEEECCSCH
T ss_pred EEEEeeCCC-CCCHHH---HHHHHHhcCCCEEEEecCc
Confidence 344445443 346654 6889999999999987754
No 142
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=32.26 E-value=34 Score=24.06 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=18.8
Q ss_pred CCchHHHHHHH-HhhCCCCEEEeecc
Q psy149 24 SYKPLEDLIAL-TVQQEPDVLILIGP 48 (86)
Q Consensus 24 ~y~pL~~ll~~-v~~~~PdvlIL~GP 48 (86)
.|....+.+.. +.+.+||++|-+|-
T Consensus 45 ~y~~~~~~l~~~~~~~~Pd~VihvG~ 70 (215)
T 3lac_A 45 VFHKSISVLKEYIEELAPEFIICIGQ 70 (215)
T ss_dssp STTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EhHHHHHHHHHHHHhhCCCeEEEecc
Confidence 46666666655 55689999999997
No 143
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=32.18 E-value=43 Score=20.81 Aligned_cols=20 Identities=15% Similarity=0.531 Sum_probs=17.4
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.+.|++|+
T Consensus 104 ~~~~~I~~~a~~~~~DlIV~ 123 (170)
T 2dum_A 104 IPWDEIVKVAEEENVSLIIL 123 (170)
T ss_dssp CHHHHHHHHHHHTTCSEEEE
T ss_pred ChHHHHHHHHHHcCCCEEEE
Confidence 47889999999999998777
No 144
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=32.10 E-value=38 Score=20.13 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.4
Q ss_pred hHHHHHHHHhhC-CCCEEEe
Q psy149 27 PLEDLIALTVQQ-EPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~-~PdvlIL 45 (86)
-..+.++.+.+. +||++|+
T Consensus 47 ~~~~al~~l~~~~~~dlvil 66 (145)
T 3kyj_B 47 NGQEALDKLAAQPNVDLILL 66 (145)
T ss_dssp SHHHHHHHHHHCTTCCEEEE
T ss_pred CHHHHHHHHhcCCCCCEEEE
Confidence 457788888888 8999887
No 145
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=32.00 E-value=31 Score=24.35 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHHHHHHhhCCCCEEEeecccc
Q psy149 29 EDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPFi 50 (86)
..+.+.+++.+||+||..++++
T Consensus 120 ~~l~~~l~~~~pDvVv~~~~~~ 141 (412)
T 3otg_A 120 DELQPVIERLRPDLVVQEISNY 141 (412)
T ss_dssp HHHHHHHHHHCCSEEEEETTCH
T ss_pred HHHHHHHHhcCCCEEEECchhh
Confidence 6677777889999999987654
No 146
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=31.87 E-value=33 Score=23.12 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=16.2
Q ss_pred HHHhhCCCCEEEeeccccCC
Q psy149 33 ALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 33 ~~v~~~~PdvlIL~GPFiD~ 52 (86)
+.+++.+||.+|..|=+++.
T Consensus 37 ~~~~~~~~d~vv~~GD~~~~ 56 (313)
T 1ute_A 37 TTVKTLGADFILSLGDNFYF 56 (313)
T ss_dssp HHHHHHCCSEEEECSCCSTT
T ss_pred HHHHhcCCCEEEECCCccCc
Confidence 44667899999999998764
No 147
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=31.82 E-value=40 Score=19.89 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=11.7
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 36 ~~~al~~l~~~~~dlvi~ 53 (138)
T 3c3m_A 36 GEECLEALNATPPDLVLL 53 (138)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHhccCCCEEEE
Confidence 355666666677777665
No 148
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=31.63 E-value=35 Score=20.21 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhCCCCEEEee
Q psy149 27 PLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~ 46 (86)
-..+.++.+.+.+||++|+=
T Consensus 40 ~~~~a~~~l~~~~~dlii~d 59 (147)
T 2zay_A 40 NAIEAVPVAVKTHPHLIITE 59 (147)
T ss_dssp SHHHHHHHHHHHCCSEEEEE
T ss_pred CHHHHHHHHHcCCCCEEEEc
Confidence 34667777778889988873
No 149
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=31.39 E-value=34 Score=19.28 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=13.4
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
-.+.++.+.+.+||++|+
T Consensus 34 ~~~a~~~~~~~~~dlvl~ 51 (120)
T 2a9o_A 34 GREALEQFEAEQPDIIIL 51 (120)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 456677777888998865
No 150
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=31.20 E-value=37 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.8
Q ss_pred HHHHHHhhCCCCEEEeeccc
Q psy149 30 DLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~GPF 49 (86)
.+.+.+++.+||+++..|++
T Consensus 86 ~l~~~l~~~~pDvv~~~~~~ 105 (375)
T 3beo_A 86 GLDKVMKEAKPDIVLVHGDT 105 (375)
T ss_dssp HHHHHHHHHCCSEEEEETTS
T ss_pred HHHHHHHHhCCCEEEEeCCc
Confidence 46667778999999998763
No 151
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=31.00 E-value=44 Score=20.03 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 39 ~~~~a~~~l~~~~~dlii~ 57 (153)
T 3cz5_A 39 DAGEAYRLYRETTPDIVVM 57 (153)
T ss_dssp SHHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHhcCCCCEEEE
Confidence 4577888888889998886
No 152
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=30.91 E-value=43 Score=24.45 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHHHhhCCCCEEEeec
Q psy149 30 DLIALTVQQEPDVLILIG 47 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~G 47 (86)
++++.+++.+||++|+.|
T Consensus 66 ~~~~~l~~~~~Dliv~~~ 83 (305)
T 2bln_A 66 LWVERIAQLSPDVIFSFY 83 (305)
T ss_dssp HHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHhcCCCEEEEec
Confidence 577888889999999987
No 153
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=30.89 E-value=38 Score=19.86 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=12.5
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 39 ~~~~a~~~l~~~~~dlii~ 57 (142)
T 3cg4_A 39 SGGQCIDLLKKGFSGVVLL 57 (142)
T ss_dssp SHHHHHHHHHTCCCEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEE
Confidence 3456666667777777665
No 154
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=30.86 E-value=35 Score=19.43 Aligned_cols=17 Identities=12% Similarity=0.548 Sum_probs=12.2
Q ss_pred HHHHHHHhhCCCCEEEe
Q psy149 29 EDLIALTVQQEPDVLIL 45 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL 45 (86)
.+.++.+.+.+||++|+
T Consensus 35 ~~a~~~~~~~~~dlvi~ 51 (124)
T 1mb3_A 35 LSALSIARENKPDLILM 51 (124)
T ss_dssp HHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 45666777778888775
No 155
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=30.56 E-value=43 Score=19.25 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=14.1
Q ss_pred hHHHHHHHHhhC-CCCEEEe
Q psy149 27 PLEDLIALTVQQ-EPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~-~PdvlIL 45 (86)
-..+.++.+.+. +||++|+
T Consensus 37 ~~~~a~~~l~~~~~~dlvi~ 56 (132)
T 2rdm_A 37 SGAKAIEMLKSGAAIDGVVT 56 (132)
T ss_dssp SHHHHHHHHHTTCCCCEEEE
T ss_pred CHHHHHHHHHcCCCCCEEEE
Confidence 356777777776 8998876
No 156
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=30.53 E-value=46 Score=19.90 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.7
Q ss_pred chHHHHHH-HHhhCCCCEEEe
Q psy149 26 KPLEDLIA-LTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~-~v~~~~PdvlIL 45 (86)
+|-..+++ ++++.+.|++|+
T Consensus 94 ~~~~~I~~~~a~~~~~dliV~ 114 (146)
T 3s3t_A 94 IPKHTIEDYAKQHPEIDLIVL 114 (146)
T ss_dssp CHHHHHHHHHHHSTTCCEEEE
T ss_pred ChHHHHHHHHHhhcCCCEEEE
Confidence 38899999 999999998887
No 157
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=30.44 E-value=34 Score=20.31 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=13.0
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 37 ~~~a~~~l~~~~~dlvll 54 (137)
T 3cfy_A 37 GRDAIQFIERSKPQLIIL 54 (137)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 456677777778887775
No 158
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=30.29 E-value=40 Score=20.12 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=12.4
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 37 ~~~~al~~~~~~~~dlvll 55 (141)
T 3cu5_A 37 DGINAIQIALKHPPNVLLT 55 (141)
T ss_dssp SHHHHHHHHTTSCCSEEEE
T ss_pred cHHHHHHHHhcCCCCEEEE
Confidence 3456666666677777664
No 159
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=30.25 E-value=40 Score=23.99 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=18.8
Q ss_pred CCchHHHHHHH-HhhCCCCEEEeecc
Q psy149 24 SYKPLEDLIAL-TVQQEPDVLILIGP 48 (86)
Q Consensus 24 ~y~pL~~ll~~-v~~~~PdvlIL~GP 48 (86)
.|....+.+.. +.+.+||++|-+|-
T Consensus 46 ~y~~~~~~l~~~i~~~~Pd~VihvG~ 71 (223)
T 3ro0_A 46 VFYKSLAVLREAMKKHQPDIIICVGQ 71 (223)
T ss_dssp CTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EehhHHHHHHHHHHHhCCCEEEEecc
Confidence 46666666654 56689999999997
No 160
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=29.83 E-value=35 Score=19.68 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=12.7
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 36 ~~~~~~~~~~~~~dlvi~ 53 (126)
T 1dbw_A 36 AEAFLAFAPDVRNGVLVT 53 (126)
T ss_dssp HHHHHHHGGGCCSEEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 456677777778887765
No 161
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=29.77 E-value=42 Score=19.25 Aligned_cols=19 Identities=11% Similarity=-0.122 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 37 ~~~~a~~~~~~~~~dlvi~ 55 (128)
T 1jbe_A 37 DGVDALNKLQAGGYGFVIS 55 (128)
T ss_dssp SHHHHHHHHTTCCCCEEEE
T ss_pred CHHHHHHHHHhcCCCEEEE
Confidence 3567778888888998875
No 162
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.64 E-value=32 Score=20.04 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.3
Q ss_pred hHHHHHHHHhhCCCCEEEee
Q psy149 27 PLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~ 46 (86)
-..+.++.+.+.+||++|+=
T Consensus 35 ~~~~a~~~l~~~~~dlvi~d 54 (140)
T 2qr3_A 35 SPVSLSTVLREENPEVVLLD 54 (140)
T ss_dssp CHHHHHHHHHHSCEEEEEEE
T ss_pred CHHHHHHHHHcCCCCEEEEe
Confidence 35777888888889988873
No 163
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=29.64 E-value=40 Score=24.07 Aligned_cols=25 Identities=12% Similarity=0.309 Sum_probs=18.6
Q ss_pred CCchHHHHHH-HHhhCCCCEEEeecc
Q psy149 24 SYKPLEDLIA-LTVQQEPDVLILIGP 48 (86)
Q Consensus 24 ~y~pL~~ll~-~v~~~~PdvlIL~GP 48 (86)
.|....+.+. .+.+.+||++|-+|-
T Consensus 67 ~y~~~~~~l~~~i~~~~Pd~VihvG~ 92 (228)
T 4hps_A 67 IFDTSLEHLYAAVDKYQPELVISVGQ 92 (228)
T ss_dssp STTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeHHHHHHHHHHHHhhCCCEEEEecc
Confidence 4666666664 556689999999997
No 164
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=29.41 E-value=36 Score=20.95 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=13.5
Q ss_pred eCCCCCCCCCCCchHHHHHHHHhh
Q psy149 14 AGPYTQSDTLSYKPLEDLIALTVQ 37 (86)
Q Consensus 14 aGPfT~~d~l~y~pL~~ll~~v~~ 37 (86)
+||||.-.-=-=||+.|++++.-+
T Consensus 1 ~~~~tdI~QGPkEPF~dfVdRl~k 24 (77)
T 3g21_A 1 AGPWADIMQGPSESFVDFANRLIK 24 (77)
T ss_dssp CCCGGGCCCCTTCCHHHHHHHHHH
T ss_pred CCcccccccCCCccHHHHHHHHHH
Confidence 356665544444666666666543
No 165
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.32 E-value=46 Score=19.96 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=14.8
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 39 ~~~~a~~~l~~~~~dlvi~ 57 (154)
T 2rjn_A 39 SPLDALEALKGTSVQLVIS 57 (154)
T ss_dssp CHHHHHHHHTTSCCSEEEE
T ss_pred CHHHHHHHHhcCCCCEEEE
Confidence 4567788888888998876
No 166
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=29.31 E-value=27 Score=25.06 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=15.9
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccC
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
-+.+||+.+++ ...+||+||=.-
T Consensus 179 Ti~~lL~~~~~--~~~vvl~GPS~~ 201 (249)
T 3npg_A 179 TLDMILDRAKK--AKLIVITGPTGQ 201 (249)
T ss_dssp CHHHHHHHCSS--CSEEEEESGGGC
T ss_pred CHHHHHHhCcc--cCeEEEEecCch
Confidence 35677877754 337899999554
No 167
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=29.25 E-value=35 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=17.6
Q ss_pred CCchHHH-HHHHHhhCCCCEEEeeccc
Q psy149 24 SYKPLED-LIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 24 ~y~pL~~-ll~~v~~~~PdvlIL~GPF 49 (86)
.|.--.+ +.+.+.+.+||++|.+|--
T Consensus 46 ~~~~~~~~l~~~i~~~~Pd~vi~~G~a 72 (216)
T 4gxh_A 46 IFDTSLEHLYAAVDKYQPELVISVGQA 72 (216)
T ss_dssp STTHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEeccC
Confidence 3444444 4455667899999999963
No 168
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=29.11 E-value=52 Score=21.29 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=17.7
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccc
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
++.+-++..+|-|+..+.--+ .++.+.+ ...|.+|++||-
T Consensus 63 ~~riivvf~~g~~s~r~k~~~---~~~~~~~--~~aD~vi~~~~~ 102 (163)
T 3mvn_A 63 QQRILAVLEPRSNTMKMGVHK---HELATSL--QDADSVFIYQPP 102 (163)
T ss_dssp TSCEEEEECCC---------C---HHHHHHH--TTCSEEEEECC-
T ss_pred CCcEEEEECCCCcchhhHHHH---HHHHHHH--hcCCEEEEECCC
Confidence 345555555555653322111 3333333 259999999974
No 169
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=29.00 E-value=29 Score=25.39 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=28.5
Q ss_pred CceeEEEEeCCCCCCC---------CCCCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 6 RSLSMFVSAGPYTQSD---------TLSYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d---------~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
.+|.+..|||=|.... --++.||.+|++.|...+.+|-.|++|=.|..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~l~VvaS~~pl~~~v~~I~Gd~v~V~~lv~~g~dPH~ 74 (313)
T 1toa_A 17 ENLYFQGAMGSFGSKDAAADGKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHL 74 (313)
T ss_dssp --------------------CCCEEEESSHHHHHHHHHHHGGGSEEEESCCTTCCTTT
T ss_pred HHHHHHHHhccccCccccccCCCEEEEECHHHHHHHHHHcCCceEEEEccCCCCCccc
Confidence 3445555777555432 136789999999999999999999999888655
No 170
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=28.95 E-value=33 Score=25.61 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=27.9
Q ss_pred CceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+.++|.++-..-..+-.-+.+...++++.+.+..+|++++=-
T Consensus 13 ~~~kVa~vQ~~~~~d~~~nl~~~~~li~~A~~~gadlvv~PE 54 (440)
T 1ems_A 13 GRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPE 54 (440)
T ss_dssp SEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECT
T ss_pred CCceEEEEecCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Confidence 467777776544422223456677788888888999998743
No 171
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=28.83 E-value=22 Score=23.47 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=27.6
Q ss_pred eeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccC
Q psy149 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLD 51 (86)
Q Consensus 8 l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD 51 (86)
++|.+.|----. -+++.|.++++.+. .+||.+|.+|=++|
T Consensus 23 mri~~iSD~Hg~---~~~~~l~~~l~~~~-~~~D~ii~~GD~~~ 62 (178)
T 2kkn_A 23 KRFLLISDSHVP---VRMASLPDEILNSL-KEYDGVIGLGDYVD 62 (178)
T ss_dssp EEEEEECCCCBT---TTTCCCCHHHHHGG-GGCSEEEESSCBSC
T ss_pred eEEEEEecccCC---CCHHHHHHHHHHHh-cCCCEEEECCCCCC
Confidence 577777643311 13455667777766 78999999998887
No 172
>1ax8_A Obesity protein, leptin; helical cytokine, hematopoietic factor, diabetes, C; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=28.67 E-value=21 Score=24.50 Aligned_cols=45 Identities=13% Similarity=0.350 Sum_probs=25.2
Q ss_pred HHHHHHHhhCCCCEEE-----eec-cccCCCCccccCCCcCCCHHHHHHHHH
Q psy149 29 EDLIALTVQQEPDVLI-----LIG-PLLDTSHPLLLNGSLAETFEDFYVKLI 74 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlI-----L~G-PFiD~~h~~i~~g~~~~t~eelF~~~i 74 (86)
+.++.+++++.++.-+ +.| |||-..||.---+.+++|++ +|++++
T Consensus 15 ~TII~RI~d~~~~~~~s~~~~v~GldfiP~~~pi~gLssm~~TL~-~yQ~iL 65 (146)
T 1ax8_A 15 KTIVTRINDISHTQSVSSKQKVTGLDFIPGLHPILTLSKMDQTLA-VYQQIL 65 (146)
T ss_dssp HHHHHHHHHC--------------CCSCCCSSCCSSHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHhcccccCCCccccccCCccCcCCCccccHHHHHHHHH-HHHHHH
Confidence 4567788776655333 677 99999998866555666665 445553
No 173
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=28.66 E-value=58 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=20.6
Q ss_pred hHHHHHHHHhh--CCCCEEEeeccccCC
Q psy149 27 PLEDLIALTVQ--QEPDVLILIGPLLDT 52 (86)
Q Consensus 27 pL~~ll~~v~~--~~PdvlIL~GPFiD~ 52 (86)
-+..+++.+++ .+||.+|++|=+++.
T Consensus 29 ~~~~l~~~~~~~~~~~D~vi~~GDl~~~ 56 (195)
T 1xm7_A 29 FEIVILTNLLKVLKPEDTLYHLGDFTWH 56 (195)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCCBSC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCC
Confidence 45566777776 589999999998875
No 174
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=28.66 E-value=37 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 59 ~~~~al~~l~~~~~dlvil 77 (164)
T 3t8y_A 59 DGLEAVEKAIELKPDVITM 77 (164)
T ss_dssp SHHHHHHHHHHHCCSEEEE
T ss_pred CHHHHHHHhccCCCCEEEE
Confidence 4567777888888998776
No 175
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=28.59 E-value=43 Score=23.08 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHHHHHhhCCCCEEEeeccc
Q psy149 29 EDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPF 49 (86)
..+.+.+++.+||+++..+++
T Consensus 86 ~~l~~~l~~~~pDvv~~~~~~ 106 (364)
T 1f0k_A 86 RQARAIMKAYKPDVVLGMGGY 106 (364)
T ss_dssp HHHHHHHHHHCCSEEEECSST
T ss_pred HHHHHHHHhcCCCEEEEeCCc
Confidence 456677778899999998875
No 176
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=28.50 E-value=44 Score=20.94 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=16.8
Q ss_pred chHHHHHHHHhhCCCCEEEe
Q psy149 26 KPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL 45 (86)
.|-..+++++++.+.|++||
T Consensus 111 ~~~~~I~~~a~~~~~DLIVm 130 (175)
T 2gm3_A 111 DPKDVICQEVKRVRPDFLVV 130 (175)
T ss_dssp CHHHHHHHHHHHHCCSEEEE
T ss_pred CHHHHHHHHHHHhCCCEEEE
Confidence 37788889999999998887
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=28.20 E-value=51 Score=20.00 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=17.3
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
-+..+.+.+....+..+++.||=
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~ 52 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEP 52 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCT
T ss_pred HHHHHHHHHhcCCCCceEEECCC
Confidence 46677777777777888999983
No 178
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=28.03 E-value=39 Score=23.80 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=18.0
Q ss_pred CCchHHHHHHH-HhhCCCCEEEeeccc
Q psy149 24 SYKPLEDLIAL-TVQQEPDVLILIGPL 49 (86)
Q Consensus 24 ~y~pL~~ll~~-v~~~~PdvlIL~GPF 49 (86)
.|....+.+.. +.+.+||++|.+|--
T Consensus 46 ~~~~~~~~l~~~i~~~~Pd~Vi~vG~a 72 (215)
T 3giu_A 46 SFKKVDNIINKTLASNHYDVVLAIGQA 72 (215)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEEEEC
T ss_pred ehHhHHHHHHHHHHHhCCCEEEEeccC
Confidence 35555555544 566899999999863
No 179
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=27.97 E-value=44 Score=21.11 Aligned_cols=19 Identities=5% Similarity=0.188 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 39 ~~~~al~~~~~~~~dlvl~ 57 (184)
T 3rqi_A 39 NKDEALKLAGAEKFEFITV 57 (184)
T ss_dssp SHHHHHHHHTTSCCSEEEE
T ss_pred CHHHHHHHHhhCCCCEEEE
Confidence 3467777888888998886
No 180
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=27.92 E-value=41 Score=19.51 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=12.1
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 36 ~~~a~~~~~~~~~dlvl~ 53 (136)
T 1mvo_A 36 GEEALKKAETEKPDLIVL 53 (136)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHhhcCCCEEEE
Confidence 455666666777887765
No 181
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Probab=27.86 E-value=57 Score=28.44 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=30.8
Q ss_pred CCCCCch---HHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 21 DTLSYKP---LEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 21 d~l~y~p---L~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
...+|+- |..|++.+.+..-.|++-.||+|-++-+.
T Consensus 87 G~fdFsg~~dL~~fl~la~e~GL~VILRpGPYi~aEw~~ 125 (1003)
T 3og2_A 87 GRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSG 125 (1003)
T ss_dssp TBCCCCGGGCSHHHHHHHHHHTCEEEEEEESCCCTTBGG
T ss_pred CEecccchhhHHHHHHHHHHcCCEEEecCCcceeeecCC
Confidence 3577886 99999999999999999999999888743
No 182
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*
Probab=27.42 E-value=37 Score=24.87 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=16.9
Q ss_pred CchHHHHHHHH----hhCCCCEEEeecc
Q psy149 25 YKPLEDLIALT----VQQEPDVLILIGP 48 (86)
Q Consensus 25 y~pL~~ll~~v----~~~~PdvlIL~GP 48 (86)
.+++.+.++.+ .+.|||++|++.|
T Consensus 34 ~~~~~~~~~~~~~~l~~~~PdaIvviS~ 61 (312)
T 3vsj_B 34 WEVLRWAYERARERLDAMKPDVLLVHSP 61 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcC
Confidence 35555555555 4469999999988
No 183
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=27.40 E-value=43 Score=21.46 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCCCEEEeeccc
Q psy149 29 EDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPF 49 (86)
..+.+.+++.+|||+.|--.-
T Consensus 25 ~~~~~~i~~~~~DIv~LQE~~ 45 (238)
T 1vyb_A 25 HRLASWIKSQDPSVCCIQETH 45 (238)
T ss_dssp HHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHHHcCCCEEEEeccc
Confidence 678899999999999997653
No 184
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=27.22 E-value=31 Score=20.05 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=10.9
Q ss_pred HHHHHHhhCCCCEEEe
Q psy149 30 DLIALTVQQEPDVLIL 45 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL 45 (86)
+.++.+.+.+||++|+
T Consensus 37 ~a~~~~~~~~~dlii~ 52 (134)
T 3f6c_A 37 SAVQRVETLKPDIVII 52 (134)
T ss_dssp THHHHHHHHCCSEEEE
T ss_pred HHHHHHHhcCCCEEEE
Confidence 4556666677887776
No 185
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=26.96 E-value=45 Score=24.63 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.9
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||+++|.|
T Consensus 171 ~~~~~~l~~~~~DliVlag 189 (302)
T 3o1l_A 171 AEVSRLVGHHQADVVVLAR 189 (302)
T ss_dssp HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHHhCCCEEEHhH
Confidence 4688999999999999987
No 186
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=26.95 E-value=54 Score=23.55 Aligned_cols=22 Identities=5% Similarity=0.099 Sum_probs=18.7
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
+...++++++.+||++|+.|..
T Consensus 174 ~~~~l~~ik~~~~~vii~~~~~ 195 (389)
T 3o21_A 174 FRRIIEEMDRRQEKRYLIDCEV 195 (389)
T ss_dssp HHHHHHHHHTTTCCEEEEESCH
T ss_pred HHHHHHHHHhCCCeEEEEECCH
Confidence 5678899999999999998754
No 187
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=26.92 E-value=57 Score=23.13 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=27.0
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++.||.+|++.|...+.+|-.|++|=.|...
T Consensus 5 s~~p~~~~v~~I~Gd~v~V~~l~~~g~dPH~ 35 (284)
T 2prs_A 5 SLKPVGFIASAIADGVTETEVLLPDGASEHD 35 (284)
T ss_dssp SSHHHHHHHHHHHTTTSCEEESSCTTCBTTB
T ss_pred EcHHHHHHHHHHcCCceEEEeCCCCCCCCcc
Confidence 4679999999999999999999999888655
No 188
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=26.69 E-value=51 Score=20.68 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCCEEEeeccccCCCCcc
Q psy149 28 LEDLIALTVQQEPDVLILIGPLLDTSHPL 56 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPFiD~~h~~ 56 (86)
-.+-++.+.+.+||++|+ |..=|.
T Consensus 42 g~eAl~~~~~~~~Dlvll-----Di~mP~ 65 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAII-----DVNLDG 65 (123)
T ss_dssp HHHHHHHHHHCCSSEEEE-----CSSSSS
T ss_pred HHHHHHHHHhCCCCEEEE-----ecCCCC
Confidence 456677788889998876 555543
No 189
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=26.41 E-value=48 Score=23.44 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
+..+++++++.+||++|+.+.-
T Consensus 180 ~~~~l~~i~~~~~~vi~~~~~~ 201 (395)
T 3h6g_A 180 AKPLLKEMKRGKEFHVIFDCSH 201 (395)
T ss_dssp GHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHHhhcCCeEEEEECCH
Confidence 4678889999999999997753
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=26.34 E-value=57 Score=19.87 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhCCCCEEEeecc
Q psy149 27 PLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GP 48 (86)
-+..+++.+....+..+++.||
T Consensus 30 ~~~~l~~~l~~~~~~~vll~G~ 51 (187)
T 2p65_A 30 EIRRAIQILSRRTKNNPILLGD 51 (187)
T ss_dssp HHHHHHHHHTSSSSCEEEEESC
T ss_pred HHHHHHHHHhCCCCCceEEECC
Confidence 4667777777777778899999
No 191
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=26.22 E-value=41 Score=23.75 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCCCEEEeeccc
Q psy149 28 LEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~GPF 49 (86)
+...++++++.+|+++|+.|.-
T Consensus 204 ~~~~l~~i~~~~~~vii~~~~~ 225 (384)
T 3qek_A 204 LTALLLEAKELEARVIILSASE 225 (384)
T ss_dssp CHHHHHHHHTSSCCEEEEECCH
T ss_pred HHHHHHHHHhcCCcEEEEECCH
Confidence 3457888999999999998864
No 192
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=26.16 E-value=44 Score=22.07 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhCCCCEEEeecccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
....+++.+++.+||||.|=-+-.
T Consensus 33 ~~~~l~~~i~~~~~DIv~lQE~~~ 56 (245)
T 1wdu_A 33 ATAELAIEAATRKAAIALIQEPYV 56 (245)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCC
T ss_pred HHHHHHHHHhhcCCCEEEEEcccc
Confidence 467889999999999999876644
No 193
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=26.03 E-value=52 Score=22.93 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=17.9
Q ss_pred CCchHHHHHHHH-hhCCCCEEEeecc
Q psy149 24 SYKPLEDLIALT-VQQEPDVLILIGP 48 (86)
Q Consensus 24 ~y~pL~~ll~~v-~~~~PdvlIL~GP 48 (86)
.|....+.+..+ .+.+||++|.+|-
T Consensus 44 ~~~~~~~~l~~~~~~~~pd~vi~vG~ 69 (208)
T 1x10_A 44 VFGKAKEVLEKTLEEIKPDIAIHVGL 69 (208)
T ss_dssp STTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 466666666554 4579999999995
No 194
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=25.92 E-value=41 Score=20.56 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=18.1
Q ss_pred chHHHHHHH-HhhCCCCEEEe
Q psy149 26 KPLEDLIAL-TVQQEPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~-v~~~~PdvlIL 45 (86)
.|-.+++++ +++.++|++|+
T Consensus 105 ~~~~~I~~~~a~~~~~DlIV~ 125 (156)
T 3fg9_A 105 DVDDVILEQVIPEFKPDLLVT 125 (156)
T ss_dssp CHHHHHHHTHHHHHCCSEEEE
T ss_pred CHHHHHHHHHHHhcCCCEEEE
Confidence 589999999 89999998887
No 195
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=25.87 E-value=36 Score=23.54 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=26.5
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEee
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~ 46 (86)
+++|.++-..-..+..-+.+...++++.+.+..+|++++=
T Consensus 3 ~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~P 42 (276)
T 2w1v_A 3 TFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLP 42 (276)
T ss_dssp EEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECC
T ss_pred ccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcC
Confidence 4777777776432212245667777777778899998873
No 196
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=25.76 E-value=62 Score=19.27 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=14.3
Q ss_pred hHHHHHHHHhh-CCCCEEEe
Q psy149 27 PLEDLIALTVQ-QEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~-~~PdvlIL 45 (86)
-..+.++.+.+ .+||++|+
T Consensus 37 ~~~~a~~~l~~~~~~dlvi~ 56 (154)
T 2qsj_A 37 TVSDALAFLEADNTVDLILL 56 (154)
T ss_dssp SHHHHHHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHhccCCCCEEEE
Confidence 45677777877 88888776
No 197
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=25.72 E-value=41 Score=24.67 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=16.8
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||+++|.|
T Consensus 161 ~~~~~~l~~~~~Dlivla~ 179 (292)
T 3lou_A 161 AQWLDVFETSGAELVILAR 179 (292)
T ss_dssp HHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHHHhCCCEEEecC
Confidence 4688999999999999987
No 198
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=25.63 E-value=58 Score=19.18 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=13.0
Q ss_pred HHHHHHHHhh-CCCCEEEe
Q psy149 28 LEDLIALTVQ-QEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~-~~PdvlIL 45 (86)
..+.++.+.+ .+||++|+
T Consensus 38 ~~~a~~~l~~~~~~dlvi~ 56 (140)
T 3h5i_A 38 GEAAVEKVSGGWYPDLILM 56 (140)
T ss_dssp HHHHHHHHHTTCCCSEEEE
T ss_pred hHHHHHHHhcCCCCCEEEE
Confidence 4666777776 78888776
No 199
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=25.61 E-value=67 Score=22.64 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=22.0
Q ss_pred EEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 12 vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
|+.-.|... +-+|++ .+.++++.+||++++..+
T Consensus 171 v~~~~~~~~-~~d~~~---~l~~i~~~~pd~v~~~~~ 203 (371)
T 4f06_A 171 VEAVRMPLS-TTDFGP---IMQRIKNSGADMIFTFLP 203 (371)
T ss_dssp EEEEEECTT-CCCCHH---HHHHHHHHTCSEEEEECC
T ss_pred EEEEecCcc-cccHHH---HHHHHHhcCCCEEEEEec
Confidence 444455433 446655 688899999999887654
No 200
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=25.39 E-value=48 Score=24.13 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.8
Q ss_pred chHHHHHHHHhhCCCCEEEee
Q psy149 26 KPLEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~ 46 (86)
.|..+|++.+.+.+||++.+-
T Consensus 167 vp~e~iv~aa~e~~~d~VglS 187 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVS 187 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEE
Confidence 589999999999999999883
No 201
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=25.35 E-value=76 Score=19.31 Aligned_cols=44 Identities=18% Similarity=0.440 Sum_probs=35.7
Q ss_pred CCceeEEEEeCCCCCCCC------CCCchHHHHHHHHhhCCCCEEEeecc
Q psy149 5 RRSLSMFVSAGPYTQSDT------LSYKPLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~------l~y~pL~~ll~~v~~~~PdvlIL~GP 48 (86)
++..+++=|-|=||..+. ++-.-+..|.+.|++..|++.|-+-.
T Consensus 30 ~rGvT~~~g~G~Ys~~~~~vl~~Vv~r~e~~~l~~~I~~iDp~AFi~i~~ 79 (96)
T 3hlu_A 30 DLGVTMLQAVGAYKNNETEVIMCVMRKATLVKVRNLLKEVDPDAFMIVST 79 (96)
T ss_dssp CCCCEEEECEESSSSSCCEEEEEEECHHHHHHHHHHHHTTCTTCEEEEC-
T ss_pred CCCEEEEEEEEcccCCCEEEEEEEecHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 568889999999997662 45678899999999999999887643
No 202
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=25.31 E-value=42 Score=24.50 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||+++|.|
T Consensus 155 ~~~~~~l~~~~~Dlivlag 173 (287)
T 3nrb_A 155 SQIKNIVTQSQADLIVLAR 173 (287)
T ss_dssp HHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHHHhCCCEEEhhh
Confidence 4688999999999999987
No 203
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=25.08 E-value=42 Score=24.50 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.8
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||+++|.|
T Consensus 156 ~~~~~~l~~~~~Dlivlag 174 (288)
T 3obi_A 156 AAITALIAQTHTDLVVLAR 174 (288)
T ss_dssp HHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEhhh
Confidence 4688999999999999987
No 204
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=24.60 E-value=33 Score=20.24 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=12.3
Q ss_pred HHHHHHHHhh-CCCCEEEe
Q psy149 28 LEDLIALTVQ-QEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~-~~PdvlIL 45 (86)
..+.++.+.+ .+||++|+
T Consensus 38 ~~~a~~~l~~~~~~dlvi~ 56 (140)
T 3lua_A 38 LKKFYSIFKDLDSITLIIM 56 (140)
T ss_dssp HHHHHTTTTTCCCCSEEEE
T ss_pred HHHHHHHHhcCCCCcEEEE
Confidence 4566666677 77777775
No 205
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=24.56 E-value=45 Score=24.36 Aligned_cols=19 Identities=11% Similarity=0.323 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++++.|
T Consensus 156 ~~~~~~l~~~~~Dlivla~ 174 (286)
T 3n0v_A 156 RKVLQVIEETGAELVILAR 174 (286)
T ss_dssp HHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEecc
Confidence 3688999999999999987
No 206
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=24.32 E-value=51 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.5
Q ss_pred HHHHHHhhCCCCEEEeec
Q psy149 30 DLIALTVQQEPDVLILIG 47 (86)
Q Consensus 30 ~ll~~v~~~~PdvlIL~G 47 (86)
++++.+++.+||++|+.|
T Consensus 66 ~~~~~l~~~~~d~iv~~~ 83 (660)
T 1z7e_A 66 LWVERIAQLSPDVIFSFY 83 (660)
T ss_dssp HHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHhcCCCEEEEcC
Confidence 577888889999999976
No 207
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.10 E-value=67 Score=18.36 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=13.6
Q ss_pred hHHHHHHHHhh-------CCCCEEEe
Q psy149 27 PLEDLIALTVQ-------QEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~-------~~PdvlIL 45 (86)
-..+.++.+.+ .+||++|+
T Consensus 36 ~~~~a~~~l~~~~~~~~~~~~dlvi~ 61 (140)
T 1k68_A 36 DGMEAMAYLRQEGEYANASRPDLILL 61 (140)
T ss_dssp SHHHHHHHHTTCGGGGSCCCCSEEEE
T ss_pred CHHHHHHHHHcccccccCCCCcEEEE
Confidence 35677777776 67888776
No 208
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=23.90 E-value=1.8e+02 Score=22.18 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=33.2
Q ss_pred HHHHHHHhhCCCCEEEeecc-----ccCCCCccccCCCcCCCHHHHHHHHHHHhhcccc
Q psy149 29 EDLIALTVQQEPDVLILIGP-----LLDTSHPLLLNGSLAETFEDFYVKLIDSIVQPLE 82 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GP-----FiD~~h~~i~~g~~~~t~eelF~~~i~~i~~~~~ 82 (86)
.-+++++++..|++-|+.-| +.-.++.....|.+...+.+-|..-+.+.++..+
T Consensus 124 ~~~lk~A~~~~~~l~i~aspWSpP~wMk~n~~~~~gg~L~~~~y~~yA~Ylvk~i~~y~ 182 (447)
T 2wnw_A 124 IPLISGALRLNPHMKLMASPWSPPAFMKTNNDMNGGGKLRRECYADWADIIINYLLEYR 182 (447)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCCCGGGBTTSCSBSCCBBCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEEecCCCcHHhccCCCcCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 45788888877998887665 4555554444566655555555555555555443
No 209
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=23.86 E-value=63 Score=23.15 Aligned_cols=21 Identities=0% Similarity=-0.192 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCEEEeeccc
Q psy149 29 EDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPF 49 (86)
...++++++.+||++|+.+.-
T Consensus 196 ~~~l~~i~~~~~~vii~~~~~ 216 (433)
T 4f11_A 196 CTSVKKLKGNDVRIILGQFDQ 216 (433)
T ss_dssp HHHHHHHHHTTCCEEEEECCH
T ss_pred HHHHHHHhhCCCeEEEEeCcH
Confidence 367889999999999998864
No 210
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=23.84 E-value=53 Score=21.47 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.0
Q ss_pred chHHHHHHHHhhCCCCEEEeec
Q psy149 26 KPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 26 ~pL~~ll~~v~~~~PdvlIL~G 47 (86)
..+..+.+.+++.+|||+.|--
T Consensus 21 ~~~~~i~~~i~~~~~DIi~LQE 42 (266)
T 3teb_A 21 EKIDILARTIAEKQYDVIAMQE 42 (266)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEE
Confidence 3677888899999999999853
No 211
>2hy5_C DSRH; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.2 PDB: 2hyb_C
Probab=23.83 E-value=92 Score=18.23 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=26.1
Q ss_pred eeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeeccccCC
Q psy149 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 8 l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
+-+++-.+||.+. -+...+..+. +-+.++++|-=|-.
T Consensus 3 ~l~i~~~~P~~~~------~~~~~l~~a~--~~~~v~f~~dgV~~ 39 (102)
T 2hy5_C 3 ILHTVNKSPFERN------SLESCLKFAT--EGASVLLFEDGIYA 39 (102)
T ss_dssp EEEEECSCTTTCS------HHHHHHHHCC--TTCEEEECGGGGGG
T ss_pred EEEEECCCCCchH------HHHHHHHHhC--CCCeEEEeHHHHHH
Confidence 5578889999865 6777777664 34788888755443
No 212
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=23.66 E-value=49 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=15.6
Q ss_pred hHHHHHHHHhhCCCCEEEeecccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
-+.+||+.+++ .-.+||+||=.
T Consensus 201 Ti~~lL~~~~~--a~~vvl~GPS~ 222 (270)
T 2h1q_A 201 TLPRLLELSRN--ARRITLVGPGT 222 (270)
T ss_dssp CHHHHHHHTTT--SSEEEEESTTC
T ss_pred CHHHHHHhCcc--CCeEEEEecCh
Confidence 36678887753 22899999964
No 213
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=23.64 E-value=40 Score=25.26 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhCCCCEEEeec--cccC
Q psy149 27 PLEDLIALTVQQEPDVLILIG--PLLD 51 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~G--PFiD 51 (86)
-..+..+.+++.+||+++|+| |+-.
T Consensus 213 ~i~~i~~a~~~vnpdvivLc~gGpIst 239 (286)
T 2p10_A 213 LINECIEAARTIRDDIIILSHGGPIAN 239 (286)
T ss_dssp HHHHHHHHHHHHCSCCEEEEESTTCCS
T ss_pred HHHHHHHHHHHhCCCcEEEecCCCCCC
Confidence 456677888889999999986 7755
No 214
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=23.56 E-value=68 Score=18.68 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=13.8
Q ss_pred hHHHHHHHHhh------CCCCEEEe
Q psy149 27 PLEDLIALTVQ------QEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~------~~PdvlIL 45 (86)
-..+.++.+.+ .+||++|+
T Consensus 41 ~~~~a~~~l~~~~~~~~~~~dlii~ 65 (143)
T 2qvg_A 41 SGNQALDMLYGRNKENKIHPKLILL 65 (143)
T ss_dssp SHHHHHHHHHTCTTCCCCCCSEEEE
T ss_pred CHHHHHHHHHhcccccCCCCCEEEE
Confidence 45677777776 78998876
No 215
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=23.53 E-value=1e+02 Score=20.45 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEe
Q psy149 9 SMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 9 ~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
+++++. | +. ..++..+.+..+.+ +||++++
T Consensus 46 ~v~~v~-~----~~-~~e~~a~~l~~~~~-~p~~Vl~ 75 (166)
T 3fet_A 46 VLYRAK-K----GT-PFDAVSEGILKIAG-NYDYIAI 75 (166)
T ss_dssp EEEEEC-T----TC-CHHHHHHHHHHHHT-TCSEEEE
T ss_pred EEEEeC-C----CC-ChHHHHHHHHHHHc-CCCEEEE
Confidence 455555 4 23 55788888888877 9996654
No 216
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=23.53 E-value=45 Score=24.65 Aligned_cols=24 Identities=4% Similarity=0.034 Sum_probs=19.4
Q ss_pred HHHHHHHhhCCCCEEEeeccccCC
Q psy149 29 EDLIALTVQQEPDVLILIGPLLDT 52 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~GPFiD~ 52 (86)
..+.+.+++.+||.+|+.|=.++.
T Consensus 24 ~~m~~~~~~~~pd~vl~~GD~~y~ 47 (342)
T 3tgh_A 24 KYFKQFIKNERVTFIVSPGSNFID 47 (342)
T ss_dssp HHHHHHHHHTTCCEEEECSCSBTT
T ss_pred HHHHHHHhhcCCCEEEECCCcccC
Confidence 455566777999999999988876
No 217
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.32 E-value=46 Score=20.25 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=15.4
Q ss_pred chHHHHHHHHhhC--CCCEEEe
Q psy149 26 KPLEDLIALTVQQ--EPDVLIL 45 (86)
Q Consensus 26 ~pL~~ll~~v~~~--~PdvlIL 45 (86)
.-..+.++.+.+. +||++|+
T Consensus 68 ~~~~~al~~l~~~~~~~dliil 89 (157)
T 3hzh_A 68 ADGEEAVIKYKNHYPNIDIVTL 89 (157)
T ss_dssp SSHHHHHHHHHHHGGGCCEEEE
T ss_pred CCHHHHHHHHHhcCCCCCEEEE
Confidence 3457788888887 8898886
No 218
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=23.22 E-value=56 Score=21.38 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.1
Q ss_pred hHHHHHHHHhhCCCCEEEeecc
Q psy149 27 PLEDLIALTVQQEPDVLILIGP 48 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GP 48 (86)
.+..+.+.+++.+|||+.|---
T Consensus 14 ~~~~i~~~i~~~~~Dii~LQE~ 35 (268)
T 1ako_A 14 RPHQLEAIVEKHQPDVIGLQET 35 (268)
T ss_dssp CHHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEEec
Confidence 4678888899999999999654
No 219
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=23.20 E-value=31 Score=21.90 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCC-EEEeeccccCC
Q psy149 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPD-VLILIGPLLDT 52 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~Pd-vlIL~GPFiD~ 52 (86)
.+.+.|++.+|||+++ -.|.+|. |...+....-+ .+.++|.=+..
T Consensus 15 ~~kl~ii~~sgP~~~~--~~~~al~-lA~~A~a~g~eV~vFf~~dGV~~ 60 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLD--RTYAPLF-MASISASMEYETSVFFMIXGPXL 60 (134)
T ss_dssp CCEEEEEECCCGGGTH--HHHHHHH-HHHHHHHTTCEEEEEECTTGGGG
T ss_pred cceEEEEEccCCCCHH--HHHHHHH-HHHHHHHCCCCEEEEEEeCcHHH
Confidence 3578999999999744 2223332 22222333333 45666654443
No 220
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=23.08 E-value=53 Score=21.78 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=19.0
Q ss_pred ccCCCCccccCCCc-CCCHHHHHHHHHH
Q psy149 49 LLDTSHPLLLNGSL-AETFEDFYVKLID 75 (86)
Q Consensus 49 FiD~~h~~i~~g~~-~~t~eelF~~~i~ 75 (86)
.||++||. .+|-+ ..+||.+++..|.
T Consensus 16 ~iDct~Pv-eD~I~d~a~fekfL~erIK 42 (121)
T 3izc_W 16 TVDVSSPT-ENGVFDPASYAKYLIDHIK 42 (121)
T ss_dssp ECCCCCSS-SCSCCCSHHHHHHHHHHHH
T ss_pred EEEcCCcc-cCCeecHHHHHHHHHHHhe
Confidence 48999997 66655 4578888887664
No 221
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=23.07 E-value=66 Score=22.14 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=13.2
Q ss_pred HHHHHhhCCCCEEEeecc
Q psy149 31 LIALTVQQEPDVLILIGP 48 (86)
Q Consensus 31 ll~~v~~~~PdvlIL~GP 48 (86)
+-+.+.+.+||++|-+|-
T Consensus 49 l~~~~~~~~pd~vi~~G~ 66 (192)
T 2ebj_A 49 ALEDLHREGPKAVLHLGL 66 (192)
T ss_dssp HHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHhCCCEEEEecc
Confidence 334445579999999985
No 222
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.97 E-value=73 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++.||.+|++.|...+.+|- |++|=.|...
T Consensus 16 s~~pl~~~v~~I~Gd~v~V~-l~~~g~dPH~ 45 (284)
T 3cx3_A 16 SFYPIYAMVKEVSGDLNDVR-MIQSSSGIHS 45 (284)
T ss_dssp SSHHHHHHHHHHHTTSSEEE-ECCCCSCTTT
T ss_pred EcHHHHHHHHHHcCCceEEE-EcCCCCCCcc
Confidence 35688888888888888888 8888777543
No 223
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=22.79 E-value=36 Score=19.25 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=12.7
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 36 ~~~~~~~~~~~~~dlvi~ 53 (124)
T 1dc7_A 36 GNEVLAALASKTPDVLLS 53 (124)
T ss_dssp TTHHHHHSSSCCCSCEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 345667777788888765
No 224
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=22.73 E-value=74 Score=22.63 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=20.9
Q ss_pred EeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 13 SAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 13 AaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+.-.|... +-+|+ ..++++++.+||++++.|
T Consensus 197 ~~~~~~~~-~~d~~---~~l~~i~~~~~d~v~~~~ 227 (419)
T 3h5l_A 197 LFETVAIP-VSDWG---PTLAKLRADPPAVIVVTH 227 (419)
T ss_dssp EEEECCSS-CSCCH---HHHHHHHHSCCSEEEECC
T ss_pred EEecCCCC-CccHH---HHHHHHHhcCCCEEEEcc
Confidence 33445433 34554 567888999999999875
No 225
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=22.73 E-value=72 Score=19.01 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=13.7
Q ss_pred hHHHHHHHHhhCCC-CEEEe
Q psy149 27 PLEDLIALTVQQEP-DVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~P-dvlIL 45 (86)
-..+.++.+.+.+| |++|+
T Consensus 35 ~~~~a~~~l~~~~~~dlvi~ 54 (151)
T 3kcn_A 35 SGPEALACIKKSDPFSVIMV 54 (151)
T ss_dssp SHHHHHHHHHHSCCCSEEEE
T ss_pred CHHHHHHHHHcCCCCCEEEE
Confidence 35677777777776 88776
No 226
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_W
Probab=22.68 E-value=54 Score=22.00 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=19.7
Q ss_pred ccCCCCccccCCCc-CCCHHHHHHHHHHH
Q psy149 49 LLDTSHPLLLNGSL-AETFEDFYVKLIDS 76 (86)
Q Consensus 49 FiD~~h~~i~~g~~-~~t~eelF~~~i~~ 76 (86)
.||++||. ++|-+ ..+||.+++..|.-
T Consensus 24 ~IDct~Pv-eD~I~d~a~fekfL~erIKV 51 (130)
T 3iz5_W 24 VIDCSKPV-EDKIMEIASLEKFLQERIKV 51 (130)
T ss_dssp CCCCCCSS-SCSCCCSHHHHHHHHHHHHH
T ss_pred EEEecCcc-cCCeecHHHHHHHHHhheee
Confidence 48999997 66655 45688888877653
No 227
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=22.63 E-value=88 Score=19.11 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhCCCCEEEeeccccCCCCcccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPLLDTSHPLLL 58 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~ 58 (86)
....+++.+++ .=+|+++. |+-+|.+.
T Consensus 68 ~~~~i~~~~~~-G~~V~~l~----d~GdP~i~ 94 (117)
T 3hh1_A 68 AVRQVIELLEE-GSDVALVT----DAGTPAIS 94 (117)
T ss_dssp HHHHHHHHHHT-TCCEEEEE----ETTSCGGG
T ss_pred HHHHHHHHHHC-CCeEEEEe----cCCcCeEe
Confidence 34455555544 33677777 66777765
No 228
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=22.63 E-value=57 Score=22.72 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=14.7
Q ss_pred HHHHHHHHhhCCCCEEEee
Q psy149 28 LEDLIALTVQQEPDVLILI 46 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~ 46 (86)
+.++.+.+++.+||+||.-
T Consensus 91 ~~~l~~~l~~~~pD~Vi~d 109 (402)
T 3ia7_A 91 LRAAEEALGDNPPDLVVYD 109 (402)
T ss_dssp HHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHhccCCCEEEEC
Confidence 4567777788999999863
No 229
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=22.52 E-value=51 Score=23.15 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.2
Q ss_pred HHHHHHHHhhCCCCEEEeec
Q psy149 28 LEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL~G 47 (86)
+.++.+.+++.+||++|.-.
T Consensus 103 ~~~l~~~l~~~~PD~Vv~~~ 122 (391)
T 3tsa_A 103 LPEYLRLAEAWRPSVLLVDV 122 (391)
T ss_dssp HHHHHHHHHHHCCSEEEEET
T ss_pred HHHHHHHHHhcCCCEEEeCc
Confidence 66778888889999988753
No 230
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=22.34 E-value=49 Score=19.47 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=10.7
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 33 ~~~a~~~~~~~~~dlvl~ 50 (139)
T 2jk1_A 33 AEAAIAILEEEWVQVIIC 50 (139)
T ss_dssp HHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 345556666666766654
No 231
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=22.26 E-value=52 Score=23.45 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=17.6
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
-+...++++++ +||++|++|..
T Consensus 195 d~~~~l~~i~~-~~~viv~~~~~ 216 (435)
T 1dp4_A 195 HYPKLLRAVRR-KGRVIYICSSP 216 (435)
T ss_dssp GHHHHHHHHHH-HCSEEEEESCH
T ss_pred hHHHHHHHHHh-hCceEEEecCh
Confidence 35678888888 99999998753
No 232
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=22.23 E-value=63 Score=18.10 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=11.6
Q ss_pred HHHHHHHhhCCCCEEEe
Q psy149 29 EDLIALTVQQEPDVLIL 45 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL 45 (86)
.+.+..+.+.+||++|+
T Consensus 35 ~~~~~~~~~~~~dlvi~ 51 (121)
T 1zh2_A 35 QRGLLEAATRKPDLIIL 51 (121)
T ss_dssp HHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 44556666778998765
No 233
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.22 E-value=75 Score=18.42 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=14.1
Q ss_pred hHHHHHHHHhh----------CCCCEEEe
Q psy149 27 PLEDLIALTVQ----------QEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~----------~~PdvlIL 45 (86)
-..+.++.+.+ .+||++|+
T Consensus 40 ~~~~al~~l~~~~~~~~~~~~~~~dlvi~ 68 (149)
T 1k66_A 40 TGDQALDFLYQTGSYCNPDIAPRPAVILL 68 (149)
T ss_dssp SHHHHHHHHHTCCSSSCGGGCCCCSEEEE
T ss_pred CHHHHHHHHHhcccccCcccCCCCcEEEE
Confidence 45677777776 78998876
No 234
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.00 E-value=71 Score=20.54 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=12.8
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 40 ~~~a~~~~~~~~~dlvll 57 (233)
T 1ys7_A 40 GAEALRSATENRPDAIVL 57 (233)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 456667777778887765
No 235
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.82 E-value=53 Score=19.18 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=12.0
Q ss_pred HHHHHHHHhh-CCCCEEEe
Q psy149 28 LEDLIALTVQ-QEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~-~~PdvlIL 45 (86)
..+.++.+.+ .+||++|+
T Consensus 48 ~~~al~~l~~~~~~dlvil 66 (138)
T 2b4a_A 48 GSAFFQHRSQLSTCDLLIV 66 (138)
T ss_dssp HHHHHHTGGGGGSCSEEEE
T ss_pred HHHHHHHHHhCCCCCEEEE
Confidence 4566666666 77777765
No 236
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.69 E-value=70 Score=21.49 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q psy149 27 PLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL 45 (86)
-..+.++.+.+.+||++|+
T Consensus 69 ~~~~al~~~~~~~~Dlvll 87 (249)
T 3q9s_A 69 SAMNGLIKAREDHPDLILL 87 (249)
T ss_dssp SHHHHHHHHHHSCCSEEEE
T ss_pred CHHHHHHHHhcCCCCEEEE
Confidence 3567778888889998887
No 237
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=21.67 E-value=1.8e+02 Score=19.24 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=34.2
Q ss_pred eEEEEeCCCCCCCC-CCCchHHHHHHHHhhCCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHHHHHhhc
Q psy149 9 SMFVSAGPYTQSDT-LSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKLIDSIVQ 79 (86)
Q Consensus 9 ~i~vAaGPfT~~d~-l~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~i~~i~~ 79 (86)
+++.|+||+.+.+. . +-...+.+.+++..-+| ++ |+-+.. ..-.++|+.-+..|.+
T Consensus 11 ~~~y~a~~~F~~~e~~--~~~~~l~~~l~~~G~~v--~~-P~~~~~----------~~~~~i~~~d~~~i~~ 67 (161)
T 2f62_A 11 KIYIAGPAVFNPDMGA--SYYNKVRELLKKENVMP--LI-PTDNEA----------TEALDIRQKNIQMIKD 67 (161)
T ss_dssp EEEEESGGGGSTTTTH--HHHHHHHHHHHTTTCEE--EC-TTTTCC----------SSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCHHHHH--HHHHHHHHHHHHCCCEE--EC-CCccCc----------chHHHHHHHHHHHHHh
Confidence 68999999998877 6 44556666666554332 22 752111 1556788877655543
No 238
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=21.05 E-value=62 Score=20.69 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=13.8
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 40 ~~~al~~~~~~~~dlvll 57 (215)
T 1a04_A 40 GEQGIELAESLDPDLILL 57 (215)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 466777777788998876
No 239
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=20.95 E-value=77 Score=20.23 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=13.2
Q ss_pred HHHHHHHHhhCCCCEEEe
Q psy149 28 LEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~~~~PdvlIL 45 (86)
..+.++.+.+.+||++|+
T Consensus 35 ~~~a~~~~~~~~~dlvll 52 (225)
T 1kgs_A 35 GEEGMYMALNEPFDVVIL 52 (225)
T ss_dssp HHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 456677777788888775
No 240
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=20.90 E-value=32 Score=19.68 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=8.9
Q ss_pred HHHHHHHhhCCCCEEEe
Q psy149 29 EDLIALTVQQEPDVLIL 45 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL 45 (86)
.+.++.+.+.+||++|+
T Consensus 36 ~~a~~~~~~~~~dlvi~ 52 (127)
T 2jba_A 36 DSAVNQLNEPWPDLILL 52 (127)
T ss_dssp HHHHTTCSSSCCSEEEE
T ss_pred HHHHHHHhccCCCEEEE
Confidence 34444555556665553
No 241
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=20.88 E-value=74 Score=23.30 Aligned_cols=19 Identities=16% Similarity=0.438 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCCEEEeec
Q psy149 29 EDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 29 ~~ll~~v~~~~PdvlIL~G 47 (86)
.++++.+++.+||++|+.|
T Consensus 71 ~~~~~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 71 QENQQLVAELQADVMVVVA 89 (314)
T ss_dssp HHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHhcCCCEEEEee
Confidence 4788899999999999987
No 242
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=20.79 E-value=58 Score=22.76 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=28.6
Q ss_pred CCceeEEEEeCCCCCCC-CCCCchHHHHHHHHhhCCCCEEEe
Q psy149 5 RRSLSMFVSAGPYTQSD-TLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 5 ~~~l~i~vAaGPfT~~d-~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
.+.++|.++-......| .-+.+...++++.+.+.++|++++
T Consensus 18 ~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvf 59 (281)
T 3p8k_A 18 GSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVL 59 (281)
T ss_dssp TSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEEC
T ss_pred CCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEc
Confidence 35678877777665433 234466777777777789999887
No 243
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=20.75 E-value=80 Score=23.01 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=27.3
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++.||.+|++.|...+.+|-.|++|=.|..+
T Consensus 37 S~~pl~~~v~~I~Gd~v~V~~Lv~pg~dPH~ 67 (307)
T 3ujp_A 37 TFTVLADMVQNVAGDKLVVESITRIGAEIHG 67 (307)
T ss_dssp SSHHHHHHHHHHHTTSSEEEESSCSSCCSSS
T ss_pred EcHHHHHHHHHHcCCceEEEEcCCCCCCCcc
Confidence 4679999999999999999999999888655
No 244
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=20.71 E-value=1.4e+02 Score=19.64 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=28.6
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEe-eccccC
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL-IGPLLD 51 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL-~GPFiD 51 (86)
.+.++ .+|+-.....+..+-+.++++.+++.+.|++|+ ++|-++
T Consensus 82 ~l~~l-p~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~ 126 (260)
T 3q9l_A 82 NLYIL-PASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIE 126 (260)
T ss_dssp TEEEE-CCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSS
T ss_pred CEEEe-cCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCC
Confidence 34444 344444455667778999999988767887666 555554
No 245
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=20.70 E-value=94 Score=19.84 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=15.7
Q ss_pred hHHHHHHHHhhCCCCEEEeeccc
Q psy149 27 PLEDLIALTVQQEPDVLILIGPL 49 (86)
Q Consensus 27 pL~~ll~~v~~~~PdvlIL~GPF 49 (86)
-+.++++++++..+. +|+++|.
T Consensus 101 ~l~~~i~~~~~~~~~-vil~~~~ 122 (240)
T 3mil_A 101 NIRQMVSLMKSYHIR-PIIIGPG 122 (240)
T ss_dssp HHHHHHHHHHHTTCE-EEEECCC
T ss_pred HHHHHHHHHHHcCCe-EEEEcCC
Confidence 577888888888885 4555653
No 246
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=20.66 E-value=71 Score=22.83 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=20.2
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
++.||.+|++.|...+.+|- |++|=.|...
T Consensus 18 s~~pl~~~v~~I~Gd~v~V~-lv~~g~dPH~ 47 (286)
T 3gi1_A 18 SFYPMYAMTKEVSGDLNDVR-MIQSGAGIHS 47 (286)
T ss_dssp SSHHHHHHHHHHHTTSSEEE-EC-----CCS
T ss_pred EcHHHHHHHHHHhCCeeEEE-EcCCCCCCcc
Confidence 35689999999988888888 8888887544
No 247
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.63 E-value=83 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.094 Sum_probs=26.0
Q ss_pred CchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 25 YKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 25 y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
+.||.+|++.|...+.+|-.|++|=.|..+
T Consensus 13 ~~~l~~~v~~I~Gd~v~V~~lv~~g~dPH~ 42 (282)
T 3mfq_A 13 TSFLNDMVYQLAGDEVERDLLIPAGEDPHL 42 (282)
T ss_dssp SHHHHHHHHHHHTTSSEEEECSCTTSCTTT
T ss_pred cHHHHHHHHHHcCCceEEEEecCCCCCCcc
Confidence 458999999999999999999999887665
No 248
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=20.54 E-value=1.3e+02 Score=20.94 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=20.4
Q ss_pred EeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeec
Q psy149 13 SAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIG 47 (86)
Q Consensus 13 AaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~G 47 (86)
+...|.. ..-+|++ .++++++.+||++++.+
T Consensus 176 ~~~~~~~-~~~d~~~---~~~~l~~~~~dav~~~~ 206 (392)
T 3lkb_A 176 DVQEVGS-GNLDNTA---LLKRFEQAGVEYVVHQN 206 (392)
T ss_dssp EEEECCT-TCCCCHH---HHHHHHHTTCCEEEEES
T ss_pred EEEeeCC-CCcCHHH---HHHHHHhcCCCEEEEec
Confidence 3445543 3445654 46778888999999865
No 249
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=20.52 E-value=86 Score=18.33 Aligned_cols=17 Identities=0% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHhh-----CCCCEEEe
Q psy149 29 EDLIALTVQ-----QEPDVLIL 45 (86)
Q Consensus 29 ~~ll~~v~~-----~~PdvlIL 45 (86)
.+.++.+.+ .+||++|+
T Consensus 37 ~~al~~~~~~~~~~~~~dlvll 58 (133)
T 2r25_B 37 QEAFDKVKELTSKGENYNMIFM 58 (133)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEE
Confidence 445555554 67887775
No 250
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=20.47 E-value=47 Score=23.27 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=28.2
Q ss_pred CceeEEEEeCCCCCCC-CCCCchHHHHHHHHhhCCCCEEEe
Q psy149 6 RSLSMFVSAGPYTQSD-TLSYKPLEDLIALTVQQEPDVLIL 45 (86)
Q Consensus 6 ~~l~i~vAaGPfT~~d-~l~y~pL~~ll~~v~~~~PdvlIL 45 (86)
+.++|.++-......| .-+.+...++++.+.+..+|++++
T Consensus 19 ~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvf 59 (283)
T 3hkx_A 19 SHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLT 59 (283)
T ss_dssp EEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEEC
T ss_pred CccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEc
Confidence 4677777777666532 234466777788888889999987
No 251
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=20.30 E-value=54 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHhhCCCCEEEeeccccCCCC
Q psy149 24 SYKPLEDLIALTVQQEPDVLILIGPLLDTSH 54 (86)
Q Consensus 24 ~y~pL~~ll~~v~~~~PdvlIL~GPFiD~~h 54 (86)
+|..|..+++.+...+++.+|++|=+||.-.
T Consensus 61 ~~~~L~~ll~~~~~~~~~~~vflGD~VDRG~ 91 (309)
T 2ie4_C 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGY 91 (309)
T ss_dssp CHHHHHHHHHHHCCTTTSCEEECSCCSSSST
T ss_pred CHHHHHHHHHHcCCCCCCEEEEeCCccCCCC
Confidence 5678888888887777888999999999654
No 252
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=20.26 E-value=1.6e+02 Score=18.09 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=35.8
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhh-CCCCEEEeeccccCCCCccccCCCcCCCHHHHHHHH
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQ-QEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYVKL 73 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~-~~PdvlIL~GPFiD~~h~~i~~g~~~~t~eelF~~~ 73 (86)
.+-+++.+|||.+. -.++.|.=....+.. .+++.+.+++-=|-..++..........+.+.|+++
T Consensus 2 k~~iiv~~~p~~~~--~~~~al~~a~a~~~~g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L 67 (130)
T 2hy5_A 2 KFALQINEGPYQHQ--ASDSAYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAEL 67 (130)
T ss_dssp EEEEEECSCTTTST--HHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHH
T ss_pred EEEEEEeCCCCCcH--HHHHHHHHHHHHHhcCCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHH
Confidence 36789999999654 233444433333333 566677887766555544433222234555555544
No 253
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.22 E-value=85 Score=18.30 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=12.3
Q ss_pred HHHHHHHHh--hCCCCEEEe
Q psy149 28 LEDLIALTV--QQEPDVLIL 45 (86)
Q Consensus 28 L~~ll~~v~--~~~PdvlIL 45 (86)
..+.++.+. +.+||++|+
T Consensus 36 ~~~a~~~~~~~~~~~dlvi~ 55 (143)
T 3jte_A 36 STEGLRIFTENCNSIDVVIT 55 (143)
T ss_dssp HHHHHHHHHHTTTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCEEEE
Confidence 456666666 567887776
No 254
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=20.15 E-value=92 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=29.4
Q ss_pred ceeEEEEeCCCCCCCCCCCchHHHHHHHHhhCCCCEEEeecccc
Q psy149 7 SLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLL 50 (86)
Q Consensus 7 ~l~i~vAaGPfT~~d~l~y~pL~~ll~~v~~~~PdvlIL~GPFi 50 (86)
+. |++||| + . .|....+.+....+=|.||+.|+-+
T Consensus 337 p~-VI~aSG--~-g-----G~~~~~L~~~a~~~~n~VIf~g~~~ 371 (717)
T 2i7x_A 337 SK-ICFVSE--V-G-----ALINEVIIKVGNSEKTTLILTKPSF 371 (717)
T ss_dssp CE-EEEEES--C-H-----HHHHHHHHHHSSCTTEEEEECSSCC
T ss_pred CE-EEEECC--C-C-----HHHHHHHHHHcCCCcCEEEEEcCCC
Confidence 54 888888 2 1 7888899999988889999999988
Done!