Your job contains 1 sequence.
>psy149
MTLTRRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNG
SLAETFEDFYVKLIDSIVQPLEKPGH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy149
(86 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0005696 - symbol:DNApol-alpha73 "DNA polymerase al... 170 8.1e-12 1
UNIPROTKB|H0YDR7 - symbol:POLA2 "DNA polymerase alpha sub... 157 2.4e-11 1
UNIPROTKB|F6XEE7 - symbol:POLA2 "Uncharacterized protein"... 161 7.2e-11 1
UNIPROTKB|E2R2N0 - symbol:POLA2 "Uncharacterized protein"... 161 7.3e-11 1
ZFIN|ZDB-GENE-030131-778 - symbol:pola2 "polymerase (DNA ... 161 7.3e-11 1
UNIPROTKB|B4DNB4 - symbol:POLA2 "cDNA FLJ60312, highly si... 157 7.6e-11 1
MGI|MGI:99690 - symbol:Pola2 "polymerase (DNA directed), ... 160 9.4e-11 1
UNIPROTKB|Q14181 - symbol:POLA2 "DNA polymerase alpha sub... 157 2.0e-10 1
RGD|621817 - symbol:Pola2 "polymerase (DNA directed), alp... 153 5.3e-10 1
UNIPROTKB|G3V8U6 - symbol:Pola2 "Polymerase (DNA directed... 153 5.3e-10 1
UNIPROTKB|F1RQV4 - symbol:POLA2 "Uncharacterized protein"... 147 2.3e-09 1
UNIPROTKB|F1MXS4 - symbol:POLA2 "DNA polymerase alpha sub... 147 2.3e-09 1
UNIPROTKB|F1MLC0 - symbol:POLA2 "DNA polymerase alpha sub... 147 2.4e-09 1
UNIPROTKB|Q58D13 - symbol:POLA2 "DNA polymerase alpha sub... 147 2.4e-09 1
TAIR|locus:2008580 - symbol:POLA2 "DNA polymerase alpha 2... 146 3.2e-09 1
ASPGD|ASPL0000002116 - symbol:AN10855 species:162425 "Eme... 124 1.1e-07 2
POMBASE|SPCC553.09c - symbol:spb70 "DNA polymerase alpha ... 121 1.4e-06 1
SGD|S000000131 - symbol:POL12 "B subunit of DNA polymeras... 120 2.3e-06 1
DICTYBASE|DDB_G0282731 - symbol:polA2 "DNA polymerase alp... 106 6.2e-05 1
WB|WBGene00001002 - symbol:div-1 species:6239 "Caenorhabd... 103 0.00012 1
>FB|FBgn0005696 [details] [associations]
symbol:DNApol-alpha73 "DNA polymerase alpha 73kD"
species:7227 "Drosophila melanogaster" [GO:0006261 "DNA-dependent
DNA replication" evidence=ISS] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 EMBL:AE014297 GO:GO:0005635
GO:GO:0003677 GO:GO:0006270 GO:GO:0003887 eggNOG:COG5214 KO:K02321
InterPro:IPR016722 PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784
EMBL:AY060943 PIR:S40962 RefSeq:NP_733206.3
ProteinModelPortal:Q9VB62 SMR:Q9VB62 IntAct:Q9VB62 MINT:MINT-282285
STRING:Q9VB62 PaxDb:Q9VB62 EnsemblMetazoa:FBtr0114543 GeneID:43278
KEGG:dme:Dmel_CG5923 CTD:43278 FlyBase:FBgn0005696
InParanoid:Q9VB62 OMA:EQWMAFS OrthoDB:EOG470RZS PhylomeDB:Q9VB62
GenomeRNAi:43278 NextBio:833113 Bgee:Q9VB62 GermOnline:CG5923
GO:GO:0005658 Uniprot:Q9VB62
Length = 609
Score = 170 (64.9 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAET 65
R L V++GP+T S L Y+PL DL+ PDVL+L GP LD H ++ G LAET
Sbjct: 358 RELQFVVASGPFTDSTDLFYEPLHDLLKYLKDHRPDVLVLTGPFLDADHKMV--GELAET 415
Query: 66 FEDFYVKLIDSIVQPL 81
F+ F+ K+I I++ +
Sbjct: 416 FDTFFEKMIGGIMESI 431
>UNIPROTKB|H0YDR7 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 HGNC:HGNC:30073
ChiTaRS:POLA2 EMBL:AP000944 Ensembl:ENST00000525924 Uniprot:H0YDR7
Length = 261
Score = 157 (60.3 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLIA+ PDV IL GP LD H + N L FED
Sbjct: 12 VLVACGPYTTSDSITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSPFEDI 71
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 72 FKQCLRTIIEGTRSSG 87
>UNIPROTKB|F6XEE7 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 CTD:23649
KO:K02321 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 OMA:QVGGTFG
EMBL:AAEX03011641 Ensembl:ENSCAFT00000021706 RefSeq:XP_533234.2
GeneID:476025 KEGG:cfa:476025 Uniprot:F6XEE7
Length = 595
Score = 161 (61.7 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLIA+ + +PDV IL GP LD H + N L FED
Sbjct: 338 VLVACGPYTTSDSITYDPLLDLIAIINRDQPDVCILFGPFLDAKHEQVENCLLTSPFEDI 397
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 398 FKQCLRTIIEGTRSSG 413
>UNIPROTKB|E2R2N0 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 Ensembl:ENSCAFT00000021706
Uniprot:E2R2N0
Length = 597
Score = 161 (61.7 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLIA+ + +PDV IL GP LD H + N L FED
Sbjct: 338 VLVACGPYTTSDSITYDPLLDLIAIINRDQPDVCILFGPFLDAKHEQVENCLLTSPFEDI 397
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 398 FKQCLRTIIEGTRSSG 413
>ZFIN|ZDB-GENE-030131-778 [details] [associations]
symbol:pola2 "polymerase (DNA directed), alpha 2"
species:7955 "Danio rerio" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 ZFIN:ZDB-GENE-030131-778 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 HOVERGEN:HBG055628 EMBL:BC065460 IPI:IPI00505805
UniGene:Dr.77094 STRING:Q6P0S9 PRIDE:Q6P0S9 InParanoid:Q6P0S9
ArrayExpress:Q6P0S9 Bgee:Q6P0S9 Uniprot:Q6P0S9
Length = 600
Score = 161 (61.7 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ ++ GPYT S++L+Y PL DLI + + PDV IL GP +D+ H + + ETFE
Sbjct: 345 VMIACGPYTPSESLTYDPLLDLITIINKDRPDVCILFGPFVDSKHEQIEKNQVTETFETI 404
Query: 70 YVKLIDSIVQ 79
+ + +DSIV+
Sbjct: 405 FKRCMDSIVE 414
>UNIPROTKB|B4DNB4 [details] [associations]
symbol:POLA2 "cDNA FLJ60312, highly similar to DNA
polymerase subunit alpha B" species:9606 "Homo sapiens" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300 UniGene:Hs.201897
HGNC:HGNC:30073 ChiTaRS:POLA2 EMBL:AP000944 EMBL:AK297842
IPI:IPI00908664 SMR:B4DNB4 STRING:B4DNB4 Ensembl:ENST00000541089
UCSC:uc010rod.1 Uniprot:B4DNB4
Length = 361
Score = 157 (60.3 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLIA+ PDV IL GP LD H + N L FED
Sbjct: 134 VLVACGPYTTSDSITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSPFEDI 193
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 194 FKQCLRTIIEGTRSSG 209
>MGI|MGI:99690 [details] [associations]
symbol:Pola2 "polymerase (DNA directed), alpha 2"
species:10090 "Mus musculus" [GO:0000060 "protein import into
nucleus, translocation" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006260 "DNA
replication" evidence=ISO;IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR007185
Pfam:PF04042 MGI:MGI:99690 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0000060 EMBL:CH466612 GO:GO:0003887 CTD:23649
eggNOG:COG5214 HOGENOM:HOG000007382 KO:K02321 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300
GeneTree:ENSGT00390000016784 GO:GO:0005658 HOVERGEN:HBG055628
OMA:QVGGTFG OrthoDB:EOG4933HH EMBL:D13546 EMBL:AK150099
EMBL:BC021424 EMBL:BC064795 IPI:IPI00331177 PIR:B46642
RefSeq:NP_032919.2 UniGene:Mm.209931 ProteinModelPortal:P33611
SMR:P33611 IntAct:P33611 STRING:P33611 PhosphoSite:P33611
PaxDb:P33611 PRIDE:P33611 Ensembl:ENSMUST00000025752 GeneID:18969
KEGG:mmu:18969 InParanoid:Q8VDR3 BindingDB:P33611 ChEMBL:CHEMBL3005
NextBio:295312 Bgee:P33611 CleanEx:MM_POLA2 Genevestigator:P33611
GermOnline:ENSMUSG00000024833 Uniprot:P33611
Length = 600
Score = 160 (61.4 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYV 71
V+ GPYT SD+++Y PL DLIA+ + +PDV IL GP LD H + N L FED +
Sbjct: 344 VACGPYTTSDSITYDPLLDLIAIINRDQPDVCILFGPFLDAKHEQVENCKLTSPFEDVFK 403
Query: 72 KLIDSIVQPLEKPG 85
+ + ++++ G
Sbjct: 404 QCLRTVIEGTRSSG 417
>UNIPROTKB|Q14181 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000060
"protein import into nucleus, translocation" evidence=IEA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006270 "DNA replication
initiation" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005737 Reactome:REACT_115566
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0003677 GO:GO:0000082
GO:GO:0006270 GO:GO:0000060 GO:GO:0000216 GO:GO:0000084
GO:GO:0000722 Reactome:REACT_383 GO:GO:0006271 GO:GO:0003887
DrugBank:DB00851 GO:GO:0032201 CTD:23649 eggNOG:COG5214
HOGENOM:HOG000007382 KO:K02321 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300 GO:GO:0005658
EMBL:L24559 EMBL:CR456737 EMBL:BC002990 EMBL:BC001347
IPI:IPI00290272 PIR:S39621 RefSeq:NP_002680.2 UniGene:Hs.201897
PDB:2KEB PDB:4E2I PDBsum:2KEB PDBsum:4E2I ProteinModelPortal:Q14181
SMR:Q14181 IntAct:Q14181 MINT:MINT-1382407 STRING:Q14181
PhosphoSite:Q14181 DMDM:90110415 PaxDb:Q14181 PeptideAtlas:Q14181
PRIDE:Q14181 DNASU:23649 Ensembl:ENST00000265465 GeneID:23649
KEGG:hsa:23649 UCSC:uc001odj.3 GeneCards:GC11P065029
HGNC:HGNC:30073 HPA:HPA037570 neXtProt:NX_Q14181 PharmGKB:PA411
HOVERGEN:HBG055628 InParanoid:Q14181 OMA:QVGGTFG OrthoDB:EOG4933HH
PhylomeDB:Q14181 ChiTaRS:POLA2 EvolutionaryTrace:Q14181
GenomeRNAi:23649 NextBio:46481 ArrayExpress:Q14181 Bgee:Q14181
CleanEx:HS_POLA2 Genevestigator:Q14181 GermOnline:ENSG00000014138
Uniprot:Q14181
Length = 598
Score = 157 (60.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLIA+ PDV IL GP LD H + N L FED
Sbjct: 342 VLVACGPYTTSDSITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSPFEDI 401
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 402 FKQCLRTIIEGTRSSG 417
>RGD|621817 [details] [associations]
symbol:Pola2 "polymerase (DNA directed), alpha 2, accessory
subunit" species:10116 "Rattus norvegicus" [GO:0000060 "protein
import into nucleus, translocation" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IMP] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IC;ISO;TAS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=ISO;IMP;TAS] [GO:0046982
"protein heterodimerization activity" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007185 Pfam:PF04042
RGD:621817 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 eggNOG:COG5214 HOGENOM:HOG000007382
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 HOVERGEN:HBG055628
OrthoDB:EOG4933HH EMBL:AJ245648 EMBL:AJ011606 IPI:IPI00214475
UniGene:Rn.205002 STRING:O89043 PRIDE:O89043 UCSC:RGD:621817
InParanoid:O89043 Genevestigator:O89043
GermOnline:ENSRNOG00000020906 Uniprot:O89043
Length = 600
Score = 153 (58.9 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLI+ PDV IL GP LD H + N L FED
Sbjct: 342 VLVACGPYTTSDSITYDPLLDLISTINHDRPDVCILFGPFLDAKHEQVENCKLTSPFEDI 401
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + ++++ G
Sbjct: 402 FKQCLRTVIEGTRSSG 417
>UNIPROTKB|G3V8U6 [details] [associations]
symbol:Pola2 "Polymerase (DNA directed), alpha 2, isoform
CRA_a" species:10116 "Rattus norvegicus" [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 RGD:621817 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 OMA:QVGGTFG
UniGene:Rn.205002 EMBL:CH473953 Ensembl:ENSRNOT00000028406
Uniprot:G3V8U6
Length = 600
Score = 153 (58.9 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLI+ PDV IL GP LD H + N L FED
Sbjct: 342 VLVACGPYTTSDSITYDPLLDLISTINHDRPDVCILFGPFLDAKHEQVENCKLTSPFEDI 401
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + ++++ G
Sbjct: 402 FKQCLRTVIEGTRSSG 417
>UNIPROTKB|F1RQV4 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 GO:GO:0005658
OMA:QVGGTFG EMBL:CU856029 Ensembl:ENSSSCT00000014207 Uniprot:F1RQV4
Length = 598
Score = 147 (56.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFE 67
+ + V+ GPYT SD+++++PL DLI + + PDV IL GP LD H + + L FE
Sbjct: 341 IMVLVACGPYTTSDSIAFEPLLDLITVINRDRPDVCILFGPFLDAKHEQVESCLLTSPFE 400
Query: 68 DFYVKLIDSIVQPLEKPG 85
D + + + +I++ G
Sbjct: 401 DVFKQCLRTIIEGTRSSG 418
>UNIPROTKB|F1MXS4 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
UniGene:Bt.37506 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 EMBL:DAAA02063561
IPI:IPI00841939 Ensembl:ENSBTAT00000045520 ArrayExpress:F1MXS4
Uniprot:F1MXS4
Length = 600
Score = 147 (56.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD++++ PL DLI + + PDV IL GP LD H + + L +FED
Sbjct: 344 VLVACGPYTTSDSITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSSFEDV 403
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 404 FKQCLRTIIEGTRSSG 419
>UNIPROTKB|F1MLC0 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 GO:GO:0005658
OMA:QVGGTFG EMBL:DAAA02063561 IPI:IPI01017580
Ensembl:ENSBTAT00000015221 ArrayExpress:F1MLC0 Uniprot:F1MLC0
Length = 604
Score = 147 (56.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD++++ PL DLI + + PDV IL GP LD H + + L +FED
Sbjct: 344 VLVACGPYTTSDSITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSSFEDV 403
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 404 FKQCLRTIIEGTRSSG 419
>UNIPROTKB|Q58D13 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 EMBL:BT021784 IPI:IPI00686582
RefSeq:NP_001019713.2 UniGene:Bt.37506 STRING:Q58D13 GeneID:514793
KEGG:bta:514793 CTD:23649 eggNOG:COG5214 HOGENOM:HOG000007382
InParanoid:Q58D13 KO:K02321 BindingDB:Q58D13 ChEMBL:CHEMBL5259
NextBio:20871515 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 Uniprot:Q58D13
Length = 604
Score = 147 (56.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD++++ PL DLI + + PDV IL GP LD H + + L +FED
Sbjct: 344 VLVACGPYTTSDSITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSSFEDV 403
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 404 FKQCLRTIIEGTRSSG 419
>TAIR|locus:2008580 [details] [associations]
symbol:POLA2 "DNA polymerase alpha 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260
"DNA replication" evidence=IEA;RCA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006270 "DNA replication initiation"
evidence=RCA] [GO:0006275 "regulation of DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR007185 Pfam:PF04042 EMBL:CP002684
GO:GO:0005739 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 IPI:IPI00519085 RefSeq:NP_176930.2
UniGene:At.35625 ProteinModelPortal:F4HTP2 SMR:F4HTP2 PRIDE:F4HTP2
EnsemblPlants:AT1G67630.1 GeneID:843086 KEGG:ath:AT1G67630
OMA:GCRFMYD Uniprot:F4HTP2
Length = 620
Score = 146 (56.5 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 26/82 (31%), Positives = 52/82 (63%)
Query: 5 RRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAE 64
+ +S +++GP+T SD L ++PL +L+A ++ P +L+L+GP +D+ HP + G++
Sbjct: 356 KSEVSFIIASGPFTTSDNLLFEPLNELLAYAKRKPPQLLVLLGPFVDSEHPEIKKGAVDA 415
Query: 65 TFED-FYVKLIDSIVQPLEKPG 85
TF + F V+++ + +E G
Sbjct: 416 TFNEIFQVEVLRKLQDYVEFMG 437
>ASPGD|ASPL0000002116 [details] [associations]
symbol:AN10855 species:162425 "Emericella nidulans"
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016233
"telomere capping" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0003887
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 OMA:FFPGQIV EnsemblFungi:CADANIAT00007654
Uniprot:C8V2N1
Length = 682
Score = 124 (48.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNG 60
L++ ++ GPYT D L ++PL+++ + D LIL+GP LD HPLL +G
Sbjct: 390 LNVMIACGPYTADDNLDFEPLKEICHKAAEGYADGLILLGPFLDLEHPLLASG 442
Score = 31 (16.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 5/9 (55%), Positives = 9/9 (100%)
Query: 70 YVKLIDSIV 78
+VK++DSI+
Sbjct: 623 FVKVVDSIL 631
>POMBASE|SPCC553.09c [details] [associations]
symbol:spb70 "DNA polymerase alpha B-subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=TAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IC] [GO:0006270 "DNA
replication initiation" evidence=NAS] InterPro:IPR007185
Pfam:PF04042 PomBase:SPCC553.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0000790 GO:GO:0006270
GO:GO:0003887 GO:GO:0006269 eggNOG:COG5214 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 PIR:T41395 RefSeq:NP_587765.1
IntAct:O74946 STRING:O74946 EnsemblFungi:SPCC553.09c.1
GeneID:2539135 KEGG:spo:SPCC553.09c OMA:FFPGQIV OrthoDB:EOG4HDX2Z
NextBio:20800307 Uniprot:O74946
Length = 574
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/81 (29%), Positives = 49/81 (60%)
Query: 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL----A 63
+S+++++GP++ D LS+ PL+ +I+ + D++IL GP LD +H L+ G++ A
Sbjct: 304 ISIYIASGPWSLRDDLSFSPLKSMISYVNKNPVDLVILCGPFLDINHILIRTGNITGTSA 363
Query: 64 ETFEDFYVKLIDSIVQPLEKP 84
+ E+ + + + I+ L P
Sbjct: 364 TSLEELFKERVTPILSQLTCP 384
>SGD|S000000131 [details] [associations]
symbol:POL12 "B subunit of DNA polymerase alpha-primase
complex" species:4932 "Saccharomyces cerevisiae" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0016233 "telomere
capping" evidence=IGI;IMP;IPI] [GO:0006273 "lagging strand
elongation" evidence=IC] [GO:0006270 "DNA replication initiation"
evidence=IMP] InterPro:IPR007185 Pfam:PF04042 SGD:S000000131
GO:GO:0005635 GO:GO:0003677 EMBL:BK006936 GO:GO:0006270
GO:GO:0016233 GO:GO:0003887 GO:GO:0006273 eggNOG:COG5214 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 GO:GO:0005658
OMA:FFPGQIV OrthoDB:EOG4HDX2Z EMBL:Z35796 EMBL:X74738 PIR:S45769
RefSeq:NP_009518.1 PDB:3FLO PDBsum:3FLO ProteinModelPortal:P38121
SMR:P38121 DIP:DIP-2536N IntAct:P38121 MINT:MINT-619251
STRING:P38121 PaxDb:P38121 EnsemblFungi:YBL035C GeneID:852245
KEGG:sce:YBL035C CYGD:YBL035c HOGENOM:HOG000248502
EvolutionaryTrace:P38121 NextBio:970805 Genevestigator:P38121
GermOnline:YBL035C Uniprot:P38121
Length = 705
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 7 SLSMFVSAGPYTQSDTLSYKPLEDLI-ALTVQQEPDVLILIGPLLDTSHPLLLNGSLAET 65
SL + V+ GPY +D S + L++ I ++ + +P VLI+ GP +D +HPL+ +G L
Sbjct: 392 SLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPN- 450
Query: 66 FEDFYV--KLIDSIVQPLEKP 84
F F K +D + L P
Sbjct: 451 FPQFKTQPKTLDELFLKLFTP 471
>DICTYBASE|DDB_G0282731 [details] [associations]
symbol:polA2 "DNA polymerase alpha subunit B"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
dictyBase:DDB_G0282731 GO:GO:0005634 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
eggNOG:COG5214 KO:K02321 RefSeq:XP_640231.2 STRING:Q54S08
EnsemblProtists:DDB0304676 GeneID:8623771 KEGG:ddi:DDB_G0282731
InParanoid:Q54S08 OMA:ISMRYLQ Uniprot:Q54S08
Length = 623
Score = 106 (42.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 8 LSMFVSAGPYT-QSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTS--HPLLLNGSLAE 64
+++ +++GP+ Q T Y PL+DL + ++P +L L+GP +D S H + + +E
Sbjct: 370 INVMIASGPFDLQKSTPDYTPLDDLCNVVSNKKPHILFLMGPFIDESNVHIKKYSETFSE 429
Query: 65 TFEDFYVKLIDSI 77
F + KL D+I
Sbjct: 430 LFNNLMKKLNDNI 442
>WB|WBGene00001002 [details] [associations]
symbol:div-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 EMBL:Z31590
eggNOG:COG5214 KO:K02321 InterPro:IPR016722 InterPro:IPR013627
Pfam:PF08418 PIRSF:PIRSF018300 EMBL:AL032660 PIR:T27359
RefSeq:NP_499268.1 ProteinModelPortal:Q21625 SMR:Q21625
IntAct:Q21625 STRING:Q21625 PaxDb:Q21625 EnsemblMetazoa:R01H10.1
GeneID:176439 KEGG:cel:CELE_R01H10.1 UCSC:R01H10.1 CTD:176439
WormBase:R01H10.1 GeneTree:ENSGT00390000016784 HOGENOM:HOG000015821
InParanoid:Q21625 OMA:KGPTGNY NextBio:892584 Uniprot:Q21625
Length = 581
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 4 TRRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLA 63
T + ++ + GPYT +D Y+ L +L+ V ++PD+L+L GP +D + L +
Sbjct: 317 TDTTKEIWFACGPYTATDNCGYEHLCELLDKVVAEKPDILMLAGPFVDKKNTFLNKPTFN 376
Query: 64 ETF----EDFYVKLIDSIV 78
T+ ED +K+ +++V
Sbjct: 377 ITYDNLLEDLLLKVKETLV 395
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.137 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 86 86 0.00091 102 3 11 22 0.47 29
29 0.47 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 449 (48 KB)
Total size of DFA: 80 KB (2064 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.48u 0.07s 10.55t Elapsed: 00:00:05
Total cpu time: 10.48u 0.07s 10.55t Elapsed: 00:00:05
Start: Thu Aug 15 15:28:25 2013 End: Thu Aug 15 15:28:30 2013