RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy149
         (86 letters)



>d2ohwa1 d.79.8.1 (A:3-130) Uncharacterized protein YueI {Bacillus
          subtilis [TaxId: 1423]}
          Length = 128

 Score = 29.6 bits (67), Expect = 0.023
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 31 LIALTVQQ--EPDVLILIGPLLDTSHP--LLLNGSLAETFEDFYVKL 73
          ++ALT  Q             L  SH   LL+NG L       Y+++
Sbjct: 35 VLALTKGQVLRSKPYKEAEHELKNSHNVTLLINGELQYQSYSSYIQM 81


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 27.0 bits (60), Expect = 0.26
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 9/34 (26%)

Query: 53  SHPLLLNGSLAET-----FEDF--YVKLIDSIVQ 79
           S  LLLNGSLAE        +F    K I  IVQ
Sbjct: 110 STQLLLNGSLAEEEVVIRSVNFTDNAKTI--IVQ 141


>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 233

 Score = 24.0 bits (51), Expect = 2.7
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 12  VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLIL 45
              G +      S   L +  AL++  +   L++
Sbjct: 200 TRVGRFELDQARSLDDLAERPALSLSLDEACLLM 233


>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB
           {Escherichia coli [TaxId: 562]}
          Length = 242

 Score = 23.6 bits (50), Expect = 4.4
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 12  VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLL 50
           ++   Y     ++ + L +L+    QQ+     L+ PLL
Sbjct: 195 LAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 233


>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 536

 Score = 22.7 bits (49), Expect = 9.0
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 28  LEDLIALTVQQEPDVLILIGPLLDTSHPLLLN 59
             + +  T   +  V+  I  +L +S  +  N
Sbjct: 338 ANEWVVQTFGDDSQVVETISWMLLSSWRIYEN 369


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 284,892
Number of extensions: 10409
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 5
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.9 bits)