BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14900
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YJE|M Chain M, Oligomeric Assembly Of Actin Bound To Mrtf-A
Length = 137
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 74/106 (69%), Gaps = 8/106 (7%)
Query: 48 LKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEKQR 107
LK+P AFH QRR LERA+T D LK KI++RP R ELVR HIL +PSL KQ
Sbjct: 34 LKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHILEETSA----EPSLQAKQL 89
Query: 108 RLSKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIA 153
+L + RLAD LN+++A RPGP+EL++KNIL P+E ++KE +I
Sbjct: 90 KLKRARLADDLNEKIAQRPGPMELVEKNIL----PVESSLKEAIIV 131
>pdb|3TPM|B Chain B, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 120
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
Query: 48 LKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEKQR 107
LK+P AFH QRR LERA+T D LK KI++RP R ELVR HIL +E +PSL KQ
Sbjct: 30 LKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHIL--EETSA--EPSLQAKQL 85
Query: 108 RLSKCRLADQLNDQLAHRPGPLELIKKNILHTE 140
+L + RLAD LN+++A RPGP+EL++KNIL E
Sbjct: 86 KLKRARLADDLNEKIAQRPGPMELVEKNILPVE 118
>pdb|3TPQ|M Chain M, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
Length = 117
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 67/90 (74%), Gaps = 4/90 (4%)
Query: 48 LKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEKQR 107
LK+P AFH QRR LERA+T D LK KI++RP R ELVR HIL +E +PSL KQ
Sbjct: 30 LKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHIL--EETSA--EPSLQAKQL 85
Query: 108 RLSKCRLADQLNDQLAHRPGPLELIKKNIL 137
+L + RLAD LN+++A RPGP+EL++KNIL
Sbjct: 86 KLKRARLADDLNEKIAQRPGPMELVEKNIL 115
>pdb|2YJF|M Chain M, Oligomeric Assembly Of Actin Bound To Mrtf-A
Length = 137
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 8/106 (7%)
Query: 48 LKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEKQR 107
LK+P AFH QR LERA+T D LK KI++RP R ELVR HIL +PSL KQ
Sbjct: 34 LKSPAAFHEQRESLERARTEDYLKRKIRSRPERAELVRMHILEETSA----EPSLQAKQL 89
Query: 108 RLSKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIA 153
+L + RLAD LN+++A RP +EL++KNIL P+E ++KE +I
Sbjct: 90 KLKRARLADDLNEKIAQRPERMELVEKNIL----PVESSLKEAIIV 131
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 1 LKTPPAFHAQRRQLERAKTGDLLKAFSKKLVSL-KRLSAPRIPSSEKTLKTPPAFHAQRR 59
LK+P AFH QR LERA+T D LK +K+ S +R R+ E+T P+ A++
Sbjct: 34 LKSPAAFHEQRESLERARTEDYLK---RKIRSRPERAELVRMHILEET-SAEPSLQAKQL 89
Query: 60 QLERAKTGDLLKAKIQARPARTELVRQHIL 89
+L+RA+ D L KI RP R ELV ++IL
Sbjct: 90 KLKRARLADDLNEKIAQRPERMELVEKNIL 119
>pdb|2V52|M Chain M, Structure Of Mal-Rpel2 Complexed To G-Actin
Length = 32
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 63 RAKTGDLLKAKIQARPARTELVRQHIL 89
RA+T D LK KI++RP R ELVR HIL
Sbjct: 1 RARTEDYLKRKIRSRPERAELVRMHIL 27
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 70 LKAKIQARPARTELVRQHILLGDEGVGFV-----DPSLAEKQRRLSKCRLAD 116
+ + +QA PA TEL + LGD GVG V +P+ ++ L C L +
Sbjct: 44 ISSAVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQKLSLQNCGLTE 95
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 5/144 (3%)
Query: 52 PAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEKQRRLSK 111
PA + LE G L I +++ + L + GV + P+ A +
Sbjct: 73 PAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPN-APGVITPGE 131
Query: 112 CRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRATCEGQSSRPEPPDHY 171
C++ Q H+PG + ++ ++ T E +++ G ++TC G P P ++
Sbjct: 132 CKIGIQPGH--IHKPGKVGIVSRSGTLTYEAVKQTTDYGF--GQSTCVGIGGDPIPGSNF 187
Query: 172 MTLDDDSRSSEATSPPSLSGEAGG 195
+ + + T + GE GG
Sbjct: 188 IDILEMFEKDPQTEAIVMIGEIGG 211
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 110 SKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRATCEGQSSRPEPPD 169
+C++ Q H+PG + ++ ++ T E +++ G ++TC G P P
Sbjct: 130 GECKIGIQPGH--IHKPGKVGIVSRSGTLTYEAVKQTTDYGF--GQSTCVGIGGDPIPGS 185
Query: 170 HYMTLDDDSRSSEATSPPSLSGEAGG 195
+++ + + T + GE GG
Sbjct: 186 NFIDILEMFEKDPQTEAIVMIGEIGG 211
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 110 SKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRATCEGQSSRPEPPD 169
+C++ Q H+PG + ++ ++ T E +++ G ++TC G P P
Sbjct: 130 GECKIGIQPGH--IHKPGKVGIVSRSGTLTYEAVKQTTDYGF--GQSTCVGIGGDPIPGS 185
Query: 170 HYMTLDDDSRSSEATSPPSLSGEAGG 195
+++ + + T + GE GG
Sbjct: 186 NFIDILEMFEKDPQTEAIVMIGEIGG 211
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 110 SKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRATCEGQSSRPEPPD 169
+C++ Q H+PG + ++ ++ T E +++ G ++TC G P P
Sbjct: 130 GECKIGIQPGH--IHKPGKVGIVSRSGTLTYEAVKQTTDYGF--GQSTCVGIGGDPIPGS 185
Query: 170 HYMTLDDDSRSSEATSPPSLSGEAGG 195
+++ + + T + GE GG
Sbjct: 186 NFIDILEMFEKDPQTEAIVMIGEIGG 211
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
Length = 288
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 110 SKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRATCEGQSSRPEPPD 169
+C++ Q H+PG + ++ ++ T E +++ G ++TC G P P
Sbjct: 130 GECKIGIQPGH--IHKPGKVGIVSRSGTLTYEAVKQTTDYGF--GQSTCVGIGGDPIPGS 185
Query: 170 HYMTLDDDSRSSEATSPPSLSGEAGG 195
+++ + + T + GE GG
Sbjct: 186 NFIDILEMFEKDPQTEAIVMIGEIGG 211
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
Length = 288
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 110 SKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRATCEGQSSRPEPPD 169
+C++ Q H+PG + ++ ++ T E +++ G ++TC G P P
Sbjct: 130 GECKIGIQPGH--IHKPGKVGIVSRSGTLTYEAVKQTTDYGF--GQSTCVGIGGDPIPGS 185
Query: 170 HYMTLDDDSRSSEATSPPSLSGEAGG 195
+++ + + T + GE GG
Sbjct: 186 NFIDILEMFEKDPQTEAIVMIGEIGG 211
>pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 110 SKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRATCEGQSSRPEPPD 169
+C++ Q H+PG + ++ ++ T E +++ G ++TC G P P
Sbjct: 130 GECKIGIQPGH--IHKPGKVGIVSRSGTLTYEAVKQTTDYGF--GQSTCVGIGGDPIPGS 185
Query: 170 HYMTLDDDSRSSEATSPPSLSGEAGG 195
+++ + + T + GE GG
Sbjct: 186 NFIDILEMFEKDPQTEAIVMIGEIGG 211
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 286
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 110 SKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRATCEGQSSRPEPPD 169
+C++ Q H+PG + ++ ++ T E +++ G ++TC G P P
Sbjct: 130 GECKIGIQPGH--IHKPGKVGIVSRSGTLTYEAVKQTTDYGF--GQSTCVGIGGDPIPGS 185
Query: 170 HYMTLDDDSRSSEATSPPSLSGEAGG 195
+++ + + T + GE GG
Sbjct: 186 NFIDILEMFEKDPQTEAIVMIGEIGG 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,268,531
Number of Sequences: 62578
Number of extensions: 219896
Number of successful extensions: 475
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 34
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)