Query psy14900
Match_columns 245
No_of_seqs 173 out of 222
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 23:42:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yje_M MKL/myocardin-like prot 100.0 2E-33 7E-38 232.4 3.7 131 17-154 6-136 (137)
2 3tpm_B MAL; nuclear import, pr 100.0 6.6E-29 2.2E-33 201.3 11.1 117 19-142 4-120 (120)
3 4b1z_M Phosphatase and actin r 99.9 1.3E-21 4.3E-26 157.5 8.9 107 18-143 6-113 (115)
4 2yje_M MKL/myocardin-like prot 99.8 4E-20 1.4E-24 152.9 2.6 102 2-109 35-136 (137)
5 3tpm_B MAL; nuclear import, pr 99.8 1.2E-18 4E-23 141.2 8.6 89 1-92 30-118 (120)
6 4b1z_M Phosphatase and actin r 99.3 3.6E-12 1.2E-16 102.4 7.6 69 65-143 6-74 (115)
7 2v52_M MKL/myocardin-like prot 98.6 9.3E-09 3.2E-13 65.7 2.0 30 63-92 1-30 (32)
8 2v52_M MKL/myocardin-like prot 98.2 4.3E-07 1.5E-11 58.0 1.9 30 111-140 1-30 (32)
9 4b1v_M Phosphatase and actin r 88.0 0.37 1.3E-05 30.2 2.6 25 116-140 6-30 (32)
10 4b1v_M Phosphatase and actin r 75.2 2.3 7.9E-05 26.6 2.7 26 66-91 4-29 (32)
No 1
>2yje_M MKL/myocardin-like protein 1; motor protein; HET: LAB ATP; 3.10A {Mus musculus} PDB: 2yjf_M*
Probab=99.97 E-value=2e-33 Score=232.43 Aligned_cols=131 Identities=44% Similarity=0.702 Sum_probs=49.2
Q ss_pred hhhhhHHHHHhhhcccccccccCCCCCCCCCCCCCcchHHHHHHHHHhhhhhHHHHHHhcCCChHHHHHhccccCCCCCC
Q psy14900 17 AKTGDLLKAFSKKLVSLKRLSAPRIPSSEKTLKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVG 96 (245)
Q Consensus 17 akt~d~Lk~kl~~Rp~~~eL~~~~i~~~~~~~k~apslqaqqk~LeRar~~D~Lk~kL~~RP~~~ELV~~nIL~~s~~~s 96 (245)
....+.|..+|.+||+..+|+..+| +++.+++|+||+++++|++++++|.|+++|.+||++.+||++|||+++
T Consensus 6 ~~rk~sL~~kL~~Rp~~~eL~~~~I---lp~~~~~ps~~~~~~~Ler~~~~d~L~~kL~~RP~~~eLv~rnIL~~~---- 78 (137)
T 2yje_M 6 SERKNVLQLKLQQRRTREELVSQGI---MPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHILEET---- 78 (137)
T ss_dssp -CHHHHHHHHHHSCCCHHHHHHTTS---SCCSSSCSTTHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHcCC---CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHcCCCCCC----
Confidence 3567889999999999999999999 788999999999999999999999999999999999999999999985
Q ss_pred CCCcchHHHHHHhHHhhHhhHHhhhhhcCCChhhHHhhCCCCCCchHHHHHHhccccc
Q psy14900 97 FVDPSLAEKQRRLSKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAF 154 (245)
Q Consensus 97 ~vaPsLqa~q~kLkra~L~D~Ln~kL~~RP~P~ELV~knIL~~d~~v~~alk~n~~~f 154 (245)
+++|+||+++++|+|+|++|+|++||++||+|+|||++|||+.+++|+++||+|+++|
T Consensus 79 ~~apslqa~q~eL~r~~~~d~L~~kL~~RP~~~eLve~nIL~~~~~v~~~i~~~~~~~ 136 (137)
T 2yje_M 79 SAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVNY 136 (137)
T ss_dssp ----------------------------------------------------------
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHcCCCCCCccHHHHHhccCCCC
Confidence 7899999999999999999999999999999999999999999999999999999998
No 2
>3tpm_B MAL; nuclear import, protein transport-transcription complex; 2.10A {Mus musculus} PDB: 3tpq_M* 2v51_E*
Probab=99.96 E-value=6.6e-29 Score=201.30 Aligned_cols=117 Identities=48% Similarity=0.725 Sum_probs=112.0
Q ss_pred hhhHHHHHhhhcccccccccCCCCCCCCCCCCCcchHHHHHHHHHhhhhhHHHHHHhcCCChHHHHHhccccCCCCCCCC
Q psy14900 19 TGDLLKAFSKKLVSLKRLSAPRIPSSEKTLKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFV 98 (245)
Q Consensus 19 t~d~Lk~kl~~Rp~~~eL~~~~i~~~~~~~k~apslqaqqk~LeRar~~D~Lk~kL~~RP~~~ELV~~nIL~~s~~~s~v 98 (245)
..+.|+.+|++||++.+|+..+| +|+++++++|+++++++++++++|+|+.+|.+||++.+|+++|||+++ ++
T Consensus 4 rk~~L~lkLq~Rr~r~qL~~qgI---lp~~~~~~~~~~~~~~l~r~~~~d~L~~kl~~RP~~~eL~~rnIL~~~----~~ 76 (120)
T 3tpm_B 4 RKNVLQLKLQQRRTREELVSQGI---MPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHILEET----SA 76 (120)
T ss_pred hHHHHHHHHhcCCCHHHHHHcCC---CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCccc----cc
Confidence 35789999999999999999999 788999999999999999999999999999999999999999999985 79
Q ss_pred CcchHHHHHHhHHhhHhhHHhhhhhcCCChhhHHhhCCCCCCch
Q psy14900 99 DPSLAEKQRRLSKCRLADQLNDQLAHRPGPLELIKKNILHTEEP 142 (245)
Q Consensus 99 aPsLqa~q~kLkra~L~D~Ln~kL~~RP~P~ELV~knIL~~d~~ 142 (245)
+|++|+++++|+|++++|+|++||++||+|+|||++|||++|++
T Consensus 77 ~p~lq~~~~~L~r~~~~d~L~~kl~~RP~~~eLv~~nIL~~d~~ 120 (120)
T 3tpm_B 77 EPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESS 120 (120)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCCCCC
Confidence 99999999999999999999999999999999999999999874
No 3
>4b1z_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP; 3.30A {Mus musculus}
Probab=99.85 E-value=1.3e-21 Score=157.49 Aligned_cols=107 Identities=23% Similarity=0.285 Sum_probs=93.0
Q ss_pred hhhhHHHHHhhhcccccccccCCCCCCCCCCCCCcchHHHHHHHHHhhhhhHHHHHHhcCCChHHHHHhccccCCCCCCC
Q psy14900 18 KTGDLLKAFSKKLVSLKRLSAPRIPSSEKTLKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGF 97 (245)
Q Consensus 18 kt~d~Lk~kl~~Rp~~~eL~~~~i~~~~~~~k~apslqaqqk~LeRar~~D~Lk~kL~~RP~~~ELV~~nIL~~s~~~s~ 97 (245)
...|.|..+|.+||+..+|+..+| +|. ....+.++++++++|+|+++|++||++++|+++|||++. +
T Consensus 6 ~RKdsL~~kL~~Rp~~~eLv~~~I---lp~------~s~~~~~~~r~~~~d~L~rkLs~RP~~eeL~qrnIL~~~---~- 72 (115)
T 4b1z_M 6 CRKDSLAIKLSNRPSKRELEEKNI---LPR------QTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPR---N- 72 (115)
T ss_dssp CHHHHHHHHHTTCCCHHHHHHTTS---SCS------SCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHTTTSSCCS---C-
T ss_pred HhHHHHHHHHhcCCCHHHHHhcCC---CCC------CChhHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCCC---C-
Confidence 457899999999999999999999 533 344567888999999999999999999999999999975 1
Q ss_pred CCcchHHHHHHhHHhhHhhHHhhhhhcCCChhhHHhhCCC-CCCchH
Q psy14900 98 VDPSLAEKQRRLSKCRLADQLNDQLAHRPGPLELIKKNIL-HTEEPI 143 (245)
Q Consensus 98 vaPsLqa~q~kLkra~L~D~Ln~kL~~RP~P~ELV~knIL-~~d~~v 143 (245)
+.+.+++|++++|.|++||++||||+|||++||| ..+.-|
T Consensus 73 ------~~~~~~~k~~l~~~L~~KLs~RP~~~EL~ek~ILi~f~~yv 113 (115)
T 4b1z_M 73 ------EQEEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYV 113 (115)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHTTCSCSTTSST
T ss_pred ------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHcCchhhhhccc
Confidence 3467999999999999999999999999999998 665443
No 4
>2yje_M MKL/myocardin-like protein 1; motor protein; HET: LAB ATP; 3.10A {Mus musculus} PDB: 2yjf_M*
Probab=99.78 E-value=4e-20 Score=152.91 Aligned_cols=102 Identities=34% Similarity=0.453 Sum_probs=23.0
Q ss_pred CCChhhHHHHHHHHHhhhhhHHHHHhhhcccccccccCCCCCCCCCCCCCcchHHHHHHHHHhhhhhHHHHHHhcCCChH
Q psy14900 2 KTPPAFHAQRRQLERAKTGDLLKAFSKKLVSLKRLSAPRIPSSEKTLKTPPAFHAQRRQLERAKTGDLLKAKIQARPART 81 (245)
Q Consensus 2 k~~~afheqrk~Lerakt~d~Lk~kl~~Rp~~~eL~~~~i~~~~~~~k~apslqaqqk~LeRar~~D~Lk~kL~~RP~~~ 81 (245)
+++++||+++++|+|++++|+|+++|.+||+..+|+..+| ++...++|++++.+++|+|++++|.|+++|.+||++.
T Consensus 35 ~~~ps~~~~~~~Ler~~~~d~L~~kL~~RP~~~eLv~rnI---L~~~~~apslqa~q~eL~r~~~~d~L~~kL~~RP~~~ 111 (137)
T 2yje_M 35 KSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHI---LEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPM 111 (137)
T ss_dssp SSCSTTHHHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHcCC---CCCCCcChHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 5789999999999999999999999999999999999999 6777888999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCCCCcchHHHHHHh
Q psy14900 82 ELVRQHILLGDEGVGFVDPSLAEKQRRL 109 (245)
Q Consensus 82 ELV~~nIL~~s~~~s~vaPsLqa~q~kL 109 (245)
|||++|||+.+ +.|+.+|.+++..+
T Consensus 112 eLve~nIL~~~---~~v~~~i~~~~~~~ 136 (137)
T 2yje_M 112 ELVEKNILPVE---SSLKEAIIVGQVNY 136 (137)
T ss_dssp ----------------------------
T ss_pred HHHHcCCCCCC---ccHHHHHhccCCCC
Confidence 99999999987 68999998887654
No 5
>3tpm_B MAL; nuclear import, protein transport-transcription complex; 2.10A {Mus musculus} PDB: 3tpq_M* 2v51_E*
Probab=99.76 E-value=1.2e-18 Score=141.16 Aligned_cols=89 Identities=39% Similarity=0.532 Sum_probs=85.2
Q ss_pred CCCChhhHHHHHHHHHhhhhhHHHHHhhhcccccccccCCCCCCCCCCCCCcchHHHHHHHHHhhhhhHHHHHHhcCCCh
Q psy14900 1 LKTPPAFHAQRRQLERAKTGDLLKAFSKKLVSLKRLSAPRIPSSEKTLKTPPAFHAQRRQLERAKTGDLLKAKIQARPAR 80 (245)
Q Consensus 1 lk~~~afheqrk~Lerakt~d~Lk~kl~~Rp~~~eL~~~~i~~~~~~~k~apslqaqqk~LeRar~~D~Lk~kL~~RP~~ 80 (245)
+|+|++||++++++++++++|+|++++.+||++.+|+..+| ++...++|++++.+++|++++++|.|++||.+||++
T Consensus 30 ~~~~~~~~~~~~~l~r~~~~d~L~~kl~~RP~~~eL~~rnI---L~~~~~~p~lq~~~~~L~r~~~~d~L~~kl~~RP~~ 106 (120)
T 3tpm_B 30 LKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHI---LEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGP 106 (120)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcC---CcccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 47899999999999999999999999999999999999999 677888999999999999999999999999999999
Q ss_pred HHHHHhccccCC
Q psy14900 81 TELVRQHILLGD 92 (245)
Q Consensus 81 ~ELV~~nIL~~s 92 (245)
.|||++|||+.+
T Consensus 107 ~eLv~~nIL~~d 118 (120)
T 3tpm_B 107 MELVEKNILPVE 118 (120)
T ss_pred HHHHHcCCCCCC
Confidence 999999999986
No 6
>4b1z_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP; 3.30A {Mus musculus}
Probab=99.31 E-value=3.6e-12 Score=102.40 Aligned_cols=69 Identities=28% Similarity=0.423 Sum_probs=61.0
Q ss_pred hhhhHHHHHHhcCCChHHHHHhccccCCCCCCCCCcchHHHHHHhHHhhHhhHHhhhhhcCCChhhHHhhCCCCCCchH
Q psy14900 65 KTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEKQRRLSKCRLADQLNDQLAHRPGPLELIKKNILHTEEPI 143 (245)
Q Consensus 65 r~~D~Lk~kL~~RP~~~ELV~~nIL~~s~~~s~vaPsLqa~q~kLkra~L~D~Ln~kL~~RP~P~ELV~knIL~~d~~v 143 (245)
...|+|..+|.+||++.+||++|||+.. + ..+..+.|+++.|.|+++|++||+++|||++|||+.+..-
T Consensus 6 ~RKdsL~~kL~~Rp~~~eLv~~~Ilp~~---s-------~~~~~~~r~~~~d~L~rkLs~RP~~eeL~qrnIL~~~~~~ 74 (115)
T 4b1z_M 6 CRKDSLAIKLSNRPSKRELEEKNILPRQ---T-------DEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQ 74 (115)
T ss_dssp CHHHHHHHHHTTCCCHHHHHHTTSSCSS---C-------HHHHHHHHHHHHHHHHHHHHHCCCHHHHHTTTSSCCSCHH
T ss_pred HhHHHHHHHHhcCCCHHHHHhcCCCCCC---C-------hhHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCCCCHH
Confidence 3568999999999999999999999764 2 3567889999999999999999999999999999977654
No 7
>2v52_M MKL/myocardin-like protein 1; structural protein/contractIle protein, structural protein, contractIle protein, nucleotide-binding; HET: LAB ATP; 1.45A {Mus musculus}
Probab=98.63 E-value=9.3e-09 Score=65.66 Aligned_cols=30 Identities=60% Similarity=0.836 Sum_probs=27.9
Q ss_pred HhhhhhHHHHHHhcCCChHHHHHhccccCC
Q psy14900 63 RAKTGDLLKAKIQARPARTELVRQHILLGD 92 (245)
Q Consensus 63 Rar~~D~Lk~kL~~RP~~~ELV~~nIL~~s 92 (245)
|++++|.|+++|.+||++.|||+||||+++
T Consensus 1 r~k~~D~Lk~kl~~RPdR~eLV~~~IL~~s 30 (32)
T 2v52_M 1 RARTEDYLKRKIRSRPERAELVRMHILEET 30 (32)
T ss_dssp CCSCSHHHHHHHHTCCCHHHHHHTTSSCCC
T ss_pred CchHHHHHHHHHHcCCCHHHHHHhcCCCCC
Confidence 468999999999999999999999999975
No 8
>2v52_M MKL/myocardin-like protein 1; structural protein/contractIle protein, structural protein, contractIle protein, nucleotide-binding; HET: LAB ATP; 1.45A {Mus musculus}
Probab=98.21 E-value=4.3e-07 Score=57.98 Aligned_cols=30 Identities=30% Similarity=0.538 Sum_probs=27.2
Q ss_pred HhhHhhHHhhhhhcCCChhhHHhhCCCCCC
Q psy14900 111 KCRLADQLNDQLAHRPGPLELIKKNILHTE 140 (245)
Q Consensus 111 ra~L~D~Ln~kL~~RP~P~ELV~knIL~~d 140 (245)
|++..|.|+++|.+||...|||++|||+..
T Consensus 1 r~k~~D~Lk~kl~~RPdR~eLV~~~IL~~s 30 (32)
T 2v52_M 1 RARTEDYLKRKIRSRPERAELVRMHILEET 30 (32)
T ss_dssp CCSCSHHHHHHHHTCCCHHHHHHTTSSCCC
T ss_pred CchHHHHHHHHHHcCCCHHHHHHhcCCCCC
Confidence 456789999999999999999999999963
No 9
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=87.96 E-value=0.37 Score=30.18 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.1
Q ss_pred hHHhhhhhcCCChhhHHhhCCCCCC
Q psy14900 116 DQLNDQLAHRPGPLELIKKNILHTE 140 (245)
Q Consensus 116 D~Ln~kL~~RP~P~ELV~knIL~~d 140 (245)
.-|..||+.|-..+|||.+|+|.+.
T Consensus 6 ~vlerkis~rqsreelikrgvlke~ 30 (32)
T 4b1v_M 6 AALERKISMRQSREELIKRGVLKEI 30 (32)
T ss_dssp HHHHHHHHTCCCHHHHHHTTSCCCC
T ss_pred HHHHHHHHhcccHHHHHHhhhhhhc
Confidence 3588899999999999999999864
No 10
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=75.21 E-value=2.3 Score=26.58 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.1
Q ss_pred hhhHHHHHHhcCCChHHHHHhccccC
Q psy14900 66 TGDLLKAKIQARPARTELVRQHILLG 91 (245)
Q Consensus 66 ~~D~Lk~kL~~RP~~~ELV~~nIL~~ 91 (245)
+..-|+.||+-|-.+.|||.+++|..
T Consensus 4 ts~vlerkis~rqsreelikrgvlke 29 (32)
T 4b1v_M 4 TSAALERKISMRQSREELIKRGVLKE 29 (32)
T ss_dssp -CHHHHHHHHTCCCHHHHHHTTSCCC
T ss_pred hHHHHHHHHHhcccHHHHHHhhhhhh
Confidence 44567889999999999999999974
Done!