Query psy14900
Match_columns 245
No_of_seqs 173 out of 222
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 23:42:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14900.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14900hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l0oc_ a.4.13.2 (C:) SigmaF { 5.6 2.7E+02 0.02 16.8 3.4 35 50-86 6-40 (57)
2 d1ug3a2 a.118.1.14 (A:1438-156 4.8 2E+02 0.015 20.0 2.6 25 109-133 2-26 (127)
3 d2db7a1 a.273.1.1 (A:3-57) Hai 3.7 2E+02 0.014 18.3 1.4 15 111-125 41-55 (55)
4 d1x4la1 g.39.1.3 (A:8-36) Four 3.2 1.2E+02 0.0091 17.0 0.1 9 169-177 14-22 (29)
5 d1rp3a1 a.4.13.1 (A:87-163) Si 2.2 7.5E+02 0.055 14.9 3.6 30 55-86 6-35 (77)
6 d2qale1 d.14.1.1 (E:78-158) Ri 2.1 3.2E+02 0.023 18.1 1.1 20 225-244 23-42 (81)
7 d2uube1 d.14.1.1 (E:74-154) Ri 2.0 3.9E+02 0.029 17.6 1.5 21 224-244 22-42 (81)
8 d1kfia3 c.84.1.1 (A:324-443) E 1.9 3.9E+02 0.028 18.3 1.5 17 228-244 27-43 (120)
9 d1pkpa1 d.14.1.1 (A:78-148) Ri 1.9 3.8E+02 0.027 17.3 1.1 21 224-244 23-43 (71)
10 d1t3qa1 a.56.1.1 (A:88-168) Qu 1.7 4.4E+02 0.032 17.4 1.3 20 131-150 34-53 (81)
No 1
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.59 E-value=2.7e+02 Score=16.79 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCcchHHHHHHHHHhhhhhHHHHHHhcCCChHHHHHh
Q psy14900 50 TPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQ 86 (245)
Q Consensus 50 ~apslqaqqk~LeRar~~D~Lk~kL~~RP~~~ELV~~ 86 (245)
+|-.+.+...++. +....|.+++..-|...||-..
T Consensus 6 vPr~~~e~~~ki~--~~~~~l~q~lgRePT~~EiA~~ 40 (57)
T d1l0oc_ 6 VSRSLKEMGNKIR--KAKDELSKTRGRAPTVTEIADH 40 (57)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHHTSCCBHHHHHHH
T ss_pred CcHHHHHHHHHHH--HHHHHHHHHcCCCCCHHHHHHH
Confidence 3444555544444 6778899999999999999875
No 2
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.82 E-value=2e+02 Score=19.98 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=20.7
Q ss_pred hHHhhHhhHHhhhhhcCCChhhHHh
Q psy14900 109 LSKCRLADQLNDQLAHRPGPLELIK 133 (245)
Q Consensus 109 Lkra~L~D~Ln~kL~~RP~P~ELV~ 133 (245)
|+...+.+.|.+.|...|++.+++.
T Consensus 2 ~~~~~l~~~L~~~l~e~~~~~~i~~ 26 (127)
T d1ug3a2 2 LPSEELNRQLEKLLKEGSSNQRVFD 26 (127)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4566788899999999999998854
No 3
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.65 E-value=2e+02 Score=18.27 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=12.3
Q ss_pred HhhHhhHHhhhhhcC
Q psy14900 111 KCRLADQLNDQLAHR 125 (245)
Q Consensus 111 ra~L~D~Ln~kL~~R 125 (245)
|.||...|...+.+|
T Consensus 41 r~RLl~HL~~C~~qr 55 (55)
T d2db7a1 41 RVRLVSHLNNYASQR 55 (55)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 678888999888776
No 4
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=1.2e+02 Score=16.99 Aligned_cols=9 Identities=11% Similarity=0.722 Sum_probs=6.3
Q ss_pred CCCCCCCCC
Q psy14900 169 DHYMTLDDD 177 (245)
Q Consensus 169 dsy~afeED 177 (245)
.-|++|||-
T Consensus 14 ~kyisFE~R 22 (29)
T d1x4la1 14 TKYISFEER 22 (29)
T ss_dssp CSCEECSSC
T ss_pred ceEEEeecc
Confidence 347888874
No 5
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=2.20 E-value=7.5e+02 Score=14.94 Aligned_cols=30 Identities=20% Similarity=0.456 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHhcCCChHHHHHh
Q psy14900 55 HAQRRQLERAKTGDLLKAKIQARPARTELVRQ 86 (245)
Q Consensus 55 qaqqk~LeRar~~D~Lk~kL~~RP~~~ELV~~ 86 (245)
....++++ +....|.+++..-|...|+-..
T Consensus 6 r~~~~ki~--~a~~~L~~~lGR~Pt~~EiA~~ 35 (77)
T d1rp3a1 6 REKERRIK--EVVEKLKEKLGREPTDEEVAKE 35 (77)
T ss_dssp HHHHHHHH--HHHHHHHHHHSSCCCHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHCcCCCHHHHHHH
Confidence 33344444 6678899999999999999875
No 6
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.12 E-value=3.2e+02 Score=18.09 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.1
Q ss_pred hhhcCcchhHHHHHHHhcCC
Q psy14900 225 RERGIVGSDMLETAAANAGI 244 (245)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~ 244 (245)
+-.||++..+..+...-|||
T Consensus 23 ~GtGliag~~vr~ilelaGI 42 (81)
T d2qale1 23 EGTGIIAGGAMRAVLEVAGV 42 (81)
T ss_dssp TTSCEECCHHHHHHHHHHTC
T ss_pred CCCccccCHHHHHHHHHcCc
Confidence 45689999999999988887
No 7
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.00 E-value=3.9e+02 Score=17.63 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=17.4
Q ss_pred hhhhcCcchhHHHHHHHhcCC
Q psy14900 224 ERERGIVGSDMLETAAANAGI 244 (245)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (245)
.+-.||++..+..+...-|||
T Consensus 22 p~GtGliag~~vr~ilelaGI 42 (81)
T d2uube1 22 APGTGVIAGAVPRAILELAGV 42 (81)
T ss_dssp CTTCCEECCHHHHHHHHHTTC
T ss_pred CCCCcccccHHHHHHHHHhCc
Confidence 345689999999999988887
No 8
>d1kfia3 c.84.1.1 (A:324-443) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Probab=1.95 E-value=3.9e+02 Score=18.26 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=13.7
Q ss_pred cCcchhHHHHHHHhcCC
Q psy14900 228 GIVGSDMLETAAANAGI 244 (245)
Q Consensus 228 ~~~~~~~~~~~~~~~~~ 244 (245)
-+++|+|++..|+..|+
T Consensus 27 tv~tS~~~~~i~~~~g~ 43 (120)
T d1kfia3 27 SMPTSGALDKVAAKNGI 43 (120)
T ss_dssp ETTSCTHHHHHHHHHTC
T ss_pred ECccCHHHHHHHHhcCc
Confidence 45788899988888876
No 9
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=1.87 E-value=3.8e+02 Score=17.26 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=16.9
Q ss_pred hhhhcCcchhHHHHHHHhcCC
Q psy14900 224 ERERGIVGSDMLETAAANAGI 244 (245)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (245)
.+-.||++..+..+...-|||
T Consensus 23 p~GtGliag~~vr~il~laGI 43 (71)
T d1pkpa1 23 SEGTGVIAGGPARAVLELAGI 43 (71)
T ss_dssp CTTCCEESCHHHHHHHHHHTC
T ss_pred CCCCccccCHHHHHHHHHcCc
Confidence 345688999988888888887
No 10
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small subunit QorS, C-domain {Pseudomonas putida [TaxId: 303]}
Probab=1.75 E-value=4.4e+02 Score=17.41 Aligned_cols=20 Identities=5% Similarity=0.247 Sum_probs=11.9
Q ss_pred HHhhCCCCCCchHHHHHHhc
Q psy14900 131 LIKKNILHTEEPIERAVKEG 150 (245)
Q Consensus 131 LV~knIL~~d~~v~~alk~n 150 (245)
|+.+|--|.++.|..++.+|
T Consensus 34 ll~~~~~ps~~ei~~al~Gn 53 (81)
T d1t3qa1 34 ILAENPAPSRDEVREVMSGN 53 (81)
T ss_dssp HHHHCSSCCHHHHHHHGGGS
T ss_pred HHhcCCCCCHHHHHHHHcCC
Confidence 44455555666677777654
Done!