RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14900
(245 letters)
>2yje_M MKL/myocardin-like protein 1; motor protein; HET: LAB ATP; 3.10A
{Mus musculus} PDB: 2yjf_M*
Length = 137
Score = 99.7 bits (248), Expect = 9e-27
Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Query: 46 KTLKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEK 105
LK+P AFH QRR LERA+T D LK KI++RP R ELVR HIL +PSL K
Sbjct: 32 PPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHILEETS----AEPSLQAK 87
Query: 106 QRRLSKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAF 154
Q +L + RLAD LN+++A RPGP+EL++KNIL E ++ A+ G + +
Sbjct: 88 QLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVNY 136
Score = 48.5 bits (115), Expect = 1e-07
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 61 LERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEKQRRLSKCRLADQLND 120
++ ++L+ K+Q R R ELV Q I+ + + E++R L + R D L
Sbjct: 3 GSLSERKNVLQLKLQQRRTREELVSQGIMPPLK----SPAAFHEQRRSLERARTEDYLKR 58
Query: 121 QLAHRPGPLELIKKNILHTEEP 142
++ RP EL++ +IL
Sbjct: 59 KIRSRPERAELVRMHILEETSA 80
>3tpm_B MAL; nuclear import, protein transport-transcription complex; 2.10A
{Mus musculus} PDB: 3tpq_M* 2v51_E*
Length = 120
Score = 88.1 bits (218), Expect = 1e-22
Identities = 53/96 (55%), Positives = 66/96 (68%), Gaps = 4/96 (4%)
Query: 46 KTLKTPPAFHAQRRQLERAKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEK 105
LK+P AFH QRR LERA+T D LK KI++RP R ELVR HIL +PSL K
Sbjct: 28 PPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVRMHILEETS----AEPSLQAK 83
Query: 106 QRRLSKCRLADQLNDQLAHRPGPLELIKKNILHTEE 141
Q +L + RLAD LN+++A RPGP+EL++KNIL E
Sbjct: 84 QLKLKRARLADDLNEKIAQRPGPMELVEKNILPVES 119
Score = 46.9 bits (111), Expect = 4e-07
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 64 AKTGDLLKAKIQARPARTELVRQHILLGDEGVGFVDPSLAEKQRRLSKCRLADQLNDQLA 123
++ ++L+ K+Q R R ELV Q I+ + + E++R L + R D L ++
Sbjct: 2 SERKNVLQLKLQQRRTREELVSQGIMPPLK----SPAAFHEQRRSLERARTEDYLKRKIR 57
Query: 124 HRPGPLELIKKNILHTEEP 142
RP EL++ +IL
Sbjct: 58 SRPERAELVRMHILEETSA 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 48/127 (37%)
Query: 23 LKAFSKKLVSLKRLSAP------RIPSSEKTLK--------TPPAFHAQRRQLERAKTGD 68
L + ++L++ AP RIP SE+ LK P FH+
Sbjct: 386 LYGLN---LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-FHS-----------H 430
Query: 69 LLKAKIQARPARTELVRQHILLGDEGVGFVDPSLA---------EKQRRLSKCRLADQLN 119
LL PA ++L+ + L V F + R LS +++++
Sbjct: 431 LLV------PA-SDLINKD--LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-SISERIV 480
Query: 120 DQLAHRP 126
D + P
Sbjct: 481 DCIIRLP 487
Score = 33.9 bits (77), Expect = 0.053
Identities = 57/341 (16%), Positives = 93/341 (27%), Gaps = 144/341 (42%)
Query: 8 HA------QRRQLERAKTGDLLKAFSKKLVSLKRLSAPRIPSSEKTLKTPPAFHAQRRQL 61
HA Q KT +L+K + + KR + S A
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS---------AL------F 146
Query: 62 ERAKTGDLLKAKI------QARPAR--TELVRQHI------LLGDEGVGFVDPSLAEKQR 107
G A++ Q EL + + L+GD + S AE
Sbjct: 147 RAVGEG---NAQLVAIFGGQGNTDDYFEEL--RDLYQTYHVLVGD----LIKFS-AETLS 196
Query: 108 RLSKCRLADQ------------LND-----------------------QLAH-------- 124
L + L + L + QLAH
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 125 --RPGPL-ELIK------KNIL--------HTEEPIERAVKEGV-IAFRATCEGQSSRPE 166
PG L +K + ++ + E +V++ + + F + P
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 167 ---PPDHYMTLDDDSRSSEATSPP--SLSG--------EAGGVRASSPP------SLSEE 207
PP L+D ++E P S+S + P SL
Sbjct: 317 TSLPPS---ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL--- 370
Query: 208 RERGGRR----ASSPTSLSEERERGIVGSDMLETAAANAGI 244
G + + P SL G+ + L A A +G+
Sbjct: 371 --VNGAKNLVVSGPPQSL-----YGLNLT--LRKAKAPSGL 402
Score = 32.7 bits (74), Expect = 0.13
Identities = 46/295 (15%), Positives = 77/295 (26%), Gaps = 99/295 (33%)
Query: 12 RQLERAKTGD-------LLKAFSKK----------LVSLKRLSAPRIPSSEKTLKTPPAF 54
+E +K G L F L + + + +++ +K
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN--YI 127
Query: 55 HAQ---RRQLERAKTGDLLKAKIQARPART---------------ELVRQHILLGDEGVG 96
A+ +R ++ L +A + A+ EL R L
Sbjct: 128 TARIMAKRPFDKKSNSALFRA-VGEGNAQLVAIFGGQGNTDDYFEEL-RD---LYQTYHV 182
Query: 97 FVDPSLAEKQRRLSKCRLADQLNDQLAHRPGPLELIKKNILHTEEP-------------- 142
V + LS L D L +++ L
Sbjct: 183 LVGDLIKFSAETLS--ELIRTTLDAEKVFTQGLNILE--WLENPSNTPDKDYLLSIPISC 238
Query: 143 --IERAVKEGVIA---FRATCEGQSSRP-EPPDHYMTLDDDSRS-------SEATSPPSL 189
I GVI + T + P E + S+ +E S S
Sbjct: 239 PLI------GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 190 SGEAG---------GVRA-------SSPPSLSEERERGGRRASSP----TSLSEE 224
GVR S PPS+ E+ SP ++L++E
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Score = 31.6 bits (71), Expect = 0.24
Identities = 36/184 (19%), Positives = 49/184 (26%), Gaps = 67/184 (36%)
Query: 43 SSEKTLKTPPA--FHAQRRQLERAKTGDLLKAKIQAR-PARTELVRQHILLGDEG----- 94
S E L P A F A + L+ + P TE DE
Sbjct: 15 SLEHVLLVPTASFFIASQ-----------LQEQFNKILPEPTEGFAAD----DEPTTPAE 59
Query: 95 -----VGFVDPSLAEKQRRLSKCRLADQLNDQLAHRPGPLE---LIKKNILHT------- 139
+G+V SL E + ++ LN L E L +I H
Sbjct: 60 LVGKFLGYVS-SLVEPSKVGQFDQV---LNLCLTE----FENCYLEGNDI-HALAAKLLQ 110
Query: 140 EEPIERAVKEGVI--AFRATCEGQSSRPEPPDHYMTLDDDSRSSEATSPPSLSGEA---- 193
E + +I A + RP +S A G A
Sbjct: 111 ENDTTLVKTKELIKNYITA--RIMAKRPFDKKS------NSALFRAVG----EGNAQLVA 158
Query: 194 --GG 195
GG
Sbjct: 159 IFGG 162
Score = 28.1 bits (62), Expect = 3.5
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 34/101 (33%)
Query: 120 DQLAHRP-----GPLE---LIKKNI-LHTEEPIERAVKEGVIAFRATCEGQSSRPEPPDH 170
D + RP G LE L+ + ++E F PEP +
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQ-----LQE---QF------NKILPEPTEG 47
Query: 171 YMTLDDDSRSSEATSPPSLSGE-----AGGVRASSPPSLSE 206
+ DD E T+P L G+ + V S +
Sbjct: 48 F-AADD-----EPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
>2v52_M MKL/myocardin-like protein 1; structural protein/contractIle
protein, structural protein, contractIle protein,
nucleotide-binding; HET: LAB ATP; 1.45A {Mus musculus}
Length = 32
Score = 32.9 bits (74), Expect = 0.006
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 63 RAKTGDLLKAKIQARPARTELVRQHIL 89
RA+T D LK KI++RP R ELVR HIL
Sbjct: 1 RARTEDYLKRKIRSRPERAELVRMHIL 27
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.30
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 13/75 (17%)
Query: 97 FVDPSLAEKQRRLSKCRLADQLNDQLAHRPGPLELIKKNILHTEEPIERAVKEGVIAFRA 156
SL EKQ + S + + LH R++ + +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYA------LH------RSIVDHYNIPKT 458
Query: 157 TCEGQSSRPEPPDHY 171
P D Y
Sbjct: 459 FDSDDLI-PPYLDQY 472
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.7
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 28 KKLVSLKRLSAPRIPSSEKTLKTPPAFHAQRRQLE 62
KKL + +L A + PA A + +E
Sbjct: 23 KKLQASLKLYAD---------DSAPAL-AIKATME 47
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.60A {Wolinella succinogenes}
Length = 157
Score = 26.0 bits (57), Expect = 9.4
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 88 ILLGDEGVGFVDPSLAEK-QRRLSKCRLAD 116
L GD+GV +L + ++ + +
Sbjct: 13 ELRGDDGVA---IALGRLVEEQMPEWSVFF 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.358
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,627,434
Number of extensions: 212538
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 25
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.7 bits)