RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14900
         (245 letters)



>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
           subtilis [TaxId: 1423]}
          Length = 178

 Score = 25.0 bits (54), Expect = 6.5
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 133 KKNILHTEEPIERAVKE 149
           +K ++  E+ I RA+  
Sbjct: 1   QKAVILDEQAIRRALTR 17


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 837,295
Number of extensions: 36505
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 3
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)