RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14903
(241 letters)
>gnl|CDD|215809 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.
Length = 454
Score = 108 bits (273), Expect = 2e-27
Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 100 KALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIV 159
KG++ I L+ S YP + + +D EAAER QF G F P++ GDYP +R+IV
Sbjct: 210 HYQKGQIGIVLNLSWAYPLSPSPPDDVEAAERADQFHNGWFLDPVFR--GDYPEEMREIV 267
Query: 160 DQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRA 219
R LP FTEE+ + +KG +DF LN+YTS + N+ + SN PS
Sbjct: 268 --------GERGGLPNFTEEDKELIKGPYDFLGLNYYTSRRVRNDPEPSN-IPSYTEGIG 318
Query: 220 ATYSQDPNWPSSNSPWLKRSIG 241
+P+WPS++ W+ G
Sbjct: 319 MDSEVNPSWPSTDWGWIIYPEG 340
Score = 46.2 bits (110), Expect = 7e-06
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 8 DKCNIIGYTAWSILDNFEWLDGYT 31
D ++ GY AWS+LDNFEW +GY+
Sbjct: 397 DGVDLRGYFAWSLLDNFEWANGYS 420
Score = 35.4 bits (82), Expect = 0.021
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLDSSNYY 116
P++ GDYP +R+IV R LP FTEE+ + +KG NYY
Sbjct: 251 LDPVFR--GDYPEEMREIV--------GERGGLPNFTEEDKELIKGPYDFL--GLNYY 296
>gnl|CDD|215455 PLN02849, PLN02849, beta-glucosidase.
Length = 503
Score = 61.5 bits (149), Expect = 5e-11
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 104 GKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHP-IYSEAGDYPPIVRQIVDQN 162
G + +L + + P + +SK+D A +R F LG P I+ GDYP +++ +
Sbjct: 250 GSIGFSLFALGFTP-STSSKDDDIATQRAKDFYLGWMLEPLIF---GDYPDEMKRTIG-- 303
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIAN--NNQSSNAPPSIINDRAA 220
SRLP F++EE + +KGS DF + HY + + N S + P +D
Sbjct: 304 --------SRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGV 355
Query: 221 TYSQDPNWPSSNSPWLKRSI 240
+ + + + +PW S+
Sbjct: 356 SLGKFSAFEYAVAPWAMESV 375
>gnl|CDD|215435 PLN02814, PLN02814, beta-glucosidase.
Length = 504
Score = 58.0 bits (140), Expect = 7e-10
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
+G + +++ + P+ SK+D+ A +R F G P+ GDYP +++ +
Sbjct: 247 RGSIGLSIFAFGLSPYT-NSKDDEIATQRAKAFLYGWMLKPLV--FGDYPDEMKRTLG-- 301
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAP 211
SRLP F+EEE + +KGS DF + HYT+ + N S P
Sbjct: 302 --------SRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFP 342
Score = 30.7 bits (69), Expect = 0.81
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 10/38 (26%)
Query: 67 GDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKG 104
GDYP +++ + SRLP F+EEE + +KG
Sbjct: 290 GDYPDEMKRTLG----------SRLPVFSEEESEQVKG 317
Score = 27.2 bits (60), Expect = 9.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 14 GYTAWSILDNFEWLDGYTIS 33
GY WS++D +E L GYT S
Sbjct: 433 GYFVWSMIDLYELLGGYTTS 452
>gnl|CDD|215539 PLN02998, PLN02998, beta-glucosidase.
Length = 497
Score = 54.0 bits (129), Expect = 2e-08
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 122 SKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEI 181
S +D++A RV F +G HP+ GDYP ++ V SRLP FTEEE
Sbjct: 271 SVKDKQATARVNDFYIGWILHPLV--FGDYPETMKTNVG----------SRLPAFTEEES 318
Query: 182 KALKGSFDFFALNHYTSILIANNNQS 207
+ +KG+FDF + +Y ++ + +N+ S
Sbjct: 319 EQVKGAFDFVGVINYMALYVKDNSSS 344
Score = 27.8 bits (61), Expect = 6.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 60 HPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKG 104
HP+ GDYP ++ V SRLP FTEEE + +KG
Sbjct: 291 HPLV--FGDYPETMKTNVG----------SRLPAFTEEESEQVKG 323
>gnl|CDD|225343 COG2723, BglB,
Beta-glucosidase/6-phospho-beta-glucosidase/beta-
galactosidase [Carbohydrate transport and metabolism].
Length = 460
Score = 43.4 bits (103), Expect = 5e-05
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
KGKV I L+ + YP + ED +AAE +F F G+YP + + +++N
Sbjct: 216 KGKVGIILNLTPAYPLSD-KPEDVKAAENADRFHNRFFLDAQVK--GEYPEYLEKELEEN 272
Query: 163 SAKEGRARSRLPRFTEEEIKALK-GSFDFFALNHYT-SILIA--NNNQSSNAPPSIINDR 218
LP + +++ LK + DF LN+YT S + A S P
Sbjct: 273 GI--------LPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSV 324
Query: 219 AATYSQDPNWPSSNSPW 235
+P S+ W
Sbjct: 325 P-----NPGLEVSDWGW 336
Score = 39.9 bits (94), Expect = 7e-04
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 3 KALVNDKCNIIGYTAWSILDNFEWLDGYT 31
K + D ++ GY AWS++DN+ W +GY
Sbjct: 393 KKAIEDGVDVRGYFAWSLIDNYSWANGYK 421
>gnl|CDD|234180 TIGR03356, BGL, beta-galactosidase.
Length = 426
Score = 43.4 bits (103), Expect = 5e-05
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 101 ALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVD 160
KV I L+ + YP + S ED AA R F P+ G YP + + +
Sbjct: 206 GPGAKVGIVLNLTPVYPASD-SPEDVAAARRADGLLNRWFLDPLL--KGRYPEDLLEYL- 261
Query: 161 QNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIA 202
LP + +++ + DF +N+YT ++
Sbjct: 262 ----------GDLPFVQDGDLETIAQPLDFLGINYYTRSVVK 293
Score = 42.6 bits (101), Expect = 1e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 10 CNIIGYTAWSILDNFEWLDGYT 31
++ GY WS+LDNFEW +GY+
Sbjct: 381 VDVRGYFVWSLLDNFEWAEGYS 402
>gnl|CDD|184102 PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional.
Length = 469
Score = 36.1 bits (84), Expect = 0.013
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 27/111 (24%)
Query: 100 KALKGKVSITLDSSNYYPHNATSKEDQEAAER--VF--QFTL-GLFAHPIYSEAGDYPP- 153
K KG++ + YP + + ED AAE + +F L + G Y
Sbjct: 206 KGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATY-------LGYYSEE 258
Query: 154 ---IVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGS---FDFFALNHYTS 198
V I++ N +E+ + LK + DF +N+Y S
Sbjct: 259 TMEGVNHILEANGGSL--------DIRDEDFEILKAAKDLNDFLGINYYMS 301
Score = 30.7 bits (70), Expect = 0.60
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 6 VNDKCNIIGYTAWSILDNFEWLDGY 30
++D N+ GY WS++D F W +GY
Sbjct: 410 ISDGANVKGYFIWSLMDVFSWSNGY 434
>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase. This enzyme is part
of the tagatose-6-phosphate pathway of
galactose-6-phosphate degradation [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 467
Score = 32.8 bits (74), Expect = 0.16
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 6 VNDKCNIIGYTAWSILDNFEWLDGYT 31
+ D N+ GY WS++D F W +GY
Sbjct: 408 IADGANVKGYFIWSLMDVFSWSNGYE 433
Score = 28.9 bits (64), Expect = 2.6
Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 27/162 (16%)
Query: 49 WVPISMISKSAHPIYSETGDYPPIVRQIVDQNSAKEGR---ARSRLPRFTEEEIKALKGK 105
W + I Y G +PP ++ + + + +R + ++ K KG+
Sbjct: 154 WTTFNEIGPIGDGQYL-VGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKD--KGYKGE 210
Query: 106 VSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYP----PIVRQIVDQ 161
+ + YP++ + D AAE + + + G Y V I+ +
Sbjct: 211 IGVVHALPTKYPYDPENPADVRAAE--LEDIIHNKFILDATYLGHYSDKTMEGVNHILAE 268
Query: 162 NSAKEGRARSRLPRF--TEEEIKALKGS---FDFFALNHYTS 198
N +E+ +AL + DF +N+Y S
Sbjct: 269 NG----------GELDLRDEDFQALDAAKDLNDFLGINYYMS 300
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this
family generate radicals by combining a 4Fe-4S cluster
and S-adenosylmethionine (SAM) in close proximity. They
are characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster.
Mechanistically, they share the transfer of a single
electron from the iron-sulfur cluster to SAM, which
leads to its reductive cleavage to methionine and a
5'-deoxyadenosyl radical, which, in turn, abstracts a
hydrogen from the appropriately positioned carbon atom.
Depending on the enzyme, SAM is consumed during this
process or it is restored and reused. Radical SAM
enzymes catalyze steps in metabolism, DNA repair, the
biosynthesis of vitamins and coenzymes, and the
biosynthesis of many antibiotics. Examples are biotin
synthase (BioB), lipoyl synthase (LipA), pyruvate
formate-lyase (PFL), coproporphyrinogen oxidase (HemN),
lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide
reductase (ARR), and MoaA, an enzyme of the
biosynthesis of molybdopterin.
Length = 204
Score = 31.1 bits (70), Expect = 0.33
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 14/132 (10%)
Query: 68 DYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALK----GKVSITLDSSNYYPHNATSK 123
+ ++R++ + E + TEE +K LK V ++LDS + +
Sbjct: 60 ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRG 119
Query: 124 EDQ----------EAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQNSAKEGRARSRL 173
+ E E + L + D + + + S L
Sbjct: 120 SGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLL 179
Query: 174 PRFTEEEIKALK 185
P A
Sbjct: 180 PEEGTPLELAAP 191
>gnl|CDD|205634 pfam13456, RVT_3, Reverse transcriptase-like. This domain is found
in plants and appears to be part of a retrotransposon.
Length = 88
Score = 28.3 bits (64), Expect = 1.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 148 AGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNH 195
D +V+QI E ARSRL E I+ L FD +++H
Sbjct: 28 ESDSQLVVQQI-----QGEYEARSRLAALLRE-IRKLLKKFDSVSVSH 69
>gnl|CDD|237675 PRK14328, PRK14328, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 439
Score = 29.2 bits (66), Expect = 2.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 85 GRARSRLPRFTEEEIKAL--KGKVSITL 110
GR RSR P EIK L +G +TL
Sbjct: 171 GRERSRKPEDIIAEIKELVSEGYKEVTL 198
>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 29.0 bits (65), Expect = 2.2
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 61 PIYSETGDY---PPIVRQIVDQNSAKEGRARSRLP---RFTEEEIKALKGKVSITLDSSN 114
PIYSE +Y P +V++ +D+N+ P +TEEEIK I D+
Sbjct: 135 PIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEF---AEIARDNDA 191
Query: 115 YYPHNATSKE 124
+ H+ T ++
Sbjct: 192 FLLHDCTYRD 201
Score = 28.2 bits (63), Expect = 4.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 143 PIYSEAGDY---PPIVRQIVDQNSAKEGRARSRLP---RFTEEEIKAL 184
PIYSE +Y P +V++ +D+N+ P +TEEEIK
Sbjct: 135 PIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEF 182
>gnl|CDD|181973 PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.
Length = 476
Score = 29.0 bits (65), Expect = 2.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 1 MQKALVNDKCNIIGYTAWSILD 22
M+KA+V D +++GYT W +D
Sbjct: 405 MKKAVVEDGVDLMGYTPWGCID 426
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 28.8 bits (65), Expect = 2.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 92 PRFTEEEIKAL--KGKVSITLDSSNYYP 117
P +T+E+I L K+S LD Y P
Sbjct: 90 PTYTKEQISDLDRDPKLSRDLDGKPYLP 117
>gnl|CDD|151444 pfam10997, DUF2837, Protein of unknown function (DUF2837). This
bacterial family of proteins has no known function.
Length = 254
Score = 28.0 bits (63), Expect = 4.1
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 139 LFAHPI--YSEAGDYPPIVRQIVDQNSAKEGRARSRLPRFTE-EEIKALKGSFDFFALN 194
LF+ I + E G P +V + + K + RLP +++K K LN
Sbjct: 94 LFSRAIIHFEETGSVPRLVVKGFSISGLKRLKKSVRLPSLEYLKQLKFRKIPKRILLLN 152
>gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily
catalytic domain. Bacteria contain five DNA polymerases
(I, II, III, IV and V). DNA polymerase II (Pol II) is a
prototype for the B-family of polymerases. The role of
Pol II in a variety of cellular activities, such as
repair of DNA damaged by UV irradiation or oxidation has
been proved by genetic studies. DNA polymerase III is
the main enzyme responsible for replication of the
bacterial chromosome; however, In vivo studies have also
shown that Pol II is able to participate in chromosomal
DNA replication with larger role in lagging-strand
replication.
Length = 347
Score = 27.8 bits (62), Expect = 4.7
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 48 SWVPISMISKSAHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVS 107
S P M++ P G + +++ +V+ A + AR+ + KA +
Sbjct: 26 SLYPSIMLAYRICPARDSLGIFLALLKYLVELRLAAKESARAAARPAERDAFKAKQAAFK 85
Query: 108 ITLDS-SNYYPHNATSKEDQEAAERV 132
+ ++S Y + D EAA V
Sbjct: 86 VLINSFYGYLGTGLHAFSDPEAAAEV 111
>gnl|CDD|176860 cd07818, SRPBCC_1, Ligand-binding SRPBCC domain of an
uncharacterized subfamily of proteins. Uncharacterized
group of the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily. SRPBCC domains have a deep hydrophobic
ligand-binding pocket and they bind diverse ligands.
SRPBCC domains include the steroidogenic acute
regulatory protein (StAR)-related lipid transfer (START)
domains of mammalian STARD1-STARD15, the C-terminal
catalytic domains of the alpha oxygenase subunit of
Rieske-type non-heme iron aromatic ring-hydroxylating
oxygenases (RHOs_alpha_C), Class I and II
phosphatidylinositol transfer proteins (PITPs), Bet v 1
(the major pollen allergen of white birch, Betula
verrucosa), CoxG, CalC, and related proteins. Other
members of the superfamily include PYR/PYL/RCAR plant
proteins, the aromatase/cyclase (ARO/CYC) domains of
proteins such as Streptomyces glaucescens
tetracenomycin, and the SRPBCC domains of Streptococcus
mutans Smu.440 and related proteins.
Length = 150
Score = 27.2 bits (61), Expect = 5.3
Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 209 NAPPSIINDRAATYSQDPNWPSSNSPWLKR 238
NAPP + P W SPW K
Sbjct: 11 NAPPEEVFPYVNDLKNWPEW----SPWEKL 36
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 27.4 bits (61), Expect = 5.7
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 25/114 (21%)
Query: 85 GRARSRLPRFTEEEIKALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPI 144
G+ RSR EI+ L K E V +G P
Sbjct: 25 GKLRSRYLEALVREIELLAEKG--------------------EKEGLVGTVFIGGG-TPT 63
Query: 145 YSEAGDYPPIVRQIVDQNSAKEGRARS---RLPRFTEEEIKALKGS-FDFFALN 194
++ I + + + R TEE ++ALK + + +L
Sbjct: 64 LLSPEQLEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVSLG 117
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 27.5 bits (62), Expect = 7.1
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 114 NYYPHNATSKEDQEAAERVFQFTLG----LFAHPIYSEAGDYPP------IVRQIVDQN 162
Y A +D EA E + + PI E G P +R++ ++
Sbjct: 166 YRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKH 224
>gnl|CDD|184949 PRK14987, PRK14987, gluconate operon transcriptional regulator;
Provisional.
Length = 331
Score = 27.3 bits (60), Expect = 7.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 71 PIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLDSSNYYPH-------NATSK 123
P+++ + D+ + SR R E+ AL+GK++ LD Y P+ NATS+
Sbjct: 6 PVLQDVADRVGVTK-MTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSR 64
>gnl|CDD|223056 PHA03362, PHA03362, single-stranded binding protein UL29;
Provisional.
Length = 1189
Score = 27.7 bits (62), Expect = 7.2
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 35/124 (28%)
Query: 86 RARSRLPRFTEEEIKALKGKVSI--TLDSS--------NYYPHNATSK-EDQEAA----- 129
R R+RLPRF L+G + + T++S+ NY P++A + EAA
Sbjct: 515 RLRTRLPRFG----APLRGPIGVFGTMNSAYSDCDVLGNYAPYSALKRGGGGEAARAVMQ 570
Query: 130 -------ERVFQF--TLGLFAHPIYSEAGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEE 180
ERV + GL + D I D+ S A S L R +EE
Sbjct: 571 DTYRATLERVMDYLEKEGLIDPDTPTSGED----TSIIRDRASFM--TALSNLNRTVDEE 624
Query: 181 IKAL 184
+
Sbjct: 625 AEQF 628
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
Provisional.
Length = 1195
Score = 27.2 bits (60), Expect = 9.6
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 212 PSIINDRAATYSQDPNWPSSNSPWLKR 238
P I+ S D W S N PW K+
Sbjct: 421 PKFIDVTYTEGSNDKKWSSRNFPWTKK 447
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.388
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,318,929
Number of extensions: 1135529
Number of successful extensions: 849
Number of sequences better than 10.0: 1
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 40
Length of query: 241
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 147
Effective length of database: 6,768,326
Effective search space: 994943922
Effective search space used: 994943922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.2 bits)