RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14903
(241 letters)
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 163 bits (416), Expect = 5e-48
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
GKV I+L+ + P S ED+ + E QF LGL+AHPI++E GDYP +++ V +N
Sbjct: 226 GGKVGISLNINWCEPAT-NSAEDRASCENYQQFNLGLYAHPIFTEEGDYPAVLKDRVSRN 284
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
SA EG SRLP+FT EE++ ++G+ DF +N YT++L + PS D
Sbjct: 285 SADEGYTDSRLPQFTAEEVEYIRGTHDFLGINFYTALLGKSG--VEGYEPSRYRDSGVIL 342
Query: 223 SQDPNWPSSNSPWLK 237
+QD WP S S WLK
Sbjct: 343 TQDAAWPISASSWLK 357
Score = 66.0 bits (162), Expect = 1e-12
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
AHPI++E GDYP +++ V +NSA EG SRLP+FT EE++ ++G T D N+Y
Sbjct: 263 AHPIFTEEGDYPAVLKDRVSRNSADEGYTDSRLPQFTAEEVEYIRG----THDFLGINFY 318
Query: 117 -PHNATSKEDQEAAERVFQFTLGLFAHPIYSEAG 149
S + R + L + +
Sbjct: 319 TALLGKSGVEGYEPSRYRDSGVILTQDAAWPISA 352
Score = 61.8 bits (151), Expect = 2e-11
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
M KA+ D N+IGYTAWS++DNFEWL GY+
Sbjct: 408 MLKAIHEDGVNVIGYTAWSLMDNFEWLRGYS 438
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral
beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA;
1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Length = 469
Score = 156 bits (397), Expect = 2e-45
Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
KG VS++L + P + S DQEAA+R F L LFA PI+ + GDYP +V+ +
Sbjct: 217 KGMVSLSLFAVWLEPADPNSVSDQEAAKRAITFHLDLFAKPIFID-GDYPEVVKSQIASM 275
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
S K+G SRLP FTEEE K +KG+ DFFA+ +YT+ LI + I+ D +
Sbjct: 276 SQKQGYPSSRLPEFTEEEKKMIKGTADFFAVQYYTTRLIKYQE-NKKGELGILQDAEIEF 334
Query: 223 SQDPNWPSSNSPWLK 237
DP+W N W+
Sbjct: 335 FPDPSWK--NVDWIY 347
Score = 61.8 bits (151), Expect = 3e-11
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ KA+ DK N+ Y AWS+LDNFEW GY+
Sbjct: 400 LFKAIQLDKVNLQVYCAWSLLDNFEWNQGYS 430
Score = 60.6 bits (148), Expect = 7e-11
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
A PI+ + GDYP +V+ + S K+G SRLP FTEEE K +KG T D + YY
Sbjct: 255 AKPIFID-GDYPEVVKSQIASMSQKQGYPSSRLPEFTEEEKKMIKG----TADFFAVQYY 309
Query: 117 PHNATSKEDQEAAERVFQFTLGLFAHPIYSEAG 149
++ + E + P S
Sbjct: 310 TTRLIKYQENKKGELGILQDAEIEFFPDPSWKN 342
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 156 bits (396), Expect = 3e-45
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 6/136 (4%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
GK+SI++ + P NA S +D E AER QF G F HP+Y GDYPPI+++ VDQ
Sbjct: 218 NGKISISISGVFFMPKNAESDDDIETAERANQFERGWFGHPVYK--GDYPPIMKKWVDQK 275
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
S +EG S+LP+FT++EIK LKG+ DF+ALNHY+S L+ S+ P+ D +
Sbjct: 276 SKEEGLPWSKLPKFTKDEIKLLKGTADFYALNHYSSRLVTFG---SDPNPNFNPDASYVT 332
Query: 223 SQDPNW-PSSNSPWLK 237
S D W + +P++
Sbjct: 333 SVDEAWLKPNETPYII 348
Score = 61.8 bits (151), Expect = 2e-11
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+A+ DKCN+IGYT WS+LDNFEW GY+
Sbjct: 399 TLQAMYEDKCNVIGYTVWSLLDNFEWFYGYS 429
Score = 58.7 bits (143), Expect = 3e-10
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 8/60 (13%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
HP+Y GDYPPI+++ VDQ S +EG S+LP+FT++EIK LKG T D + N+Y
Sbjct: 256 GHPVYK--GDYPPIMKKWVDQKSKEEGLPWSKLPKFTKDEIKLLKG----TADFYALNHY 309
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 144 bits (366), Expect = 1e-40
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
KGK+ ITL S + P + SK + +AA+R F G F P+ GDYP +R +V
Sbjct: 261 KGKIGITLVSHWFVPFSR-SKSNNDAAKRAIDFMFGWFMDPLIR--GDYPLSMRGLV--- 314
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
+RLP+FT+E+ K +KG+FDF LN+YT+ N S+ S D A
Sbjct: 315 -------GNRLPQFTKEQSKLVKGAFDFIGLNYYTANYADNLPPSNGLNNSYTTDSRANL 367
Query: 223 S----QDPNWPSSNSPWLK 237
+ P P + SPWL
Sbjct: 368 TGVRNGIPIGPQAASPWLY 386
Score = 58.4 bits (142), Expect = 4e-10
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ A + D N+ GY AWS+LDNFEW +GYT
Sbjct: 445 LLSA-IRDGANVKGYFAWSLLDNFEWSNGYT 474
Score = 46.8 bits (112), Expect = 2e-06
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 18/60 (30%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
P+ GDYP +R +V +RLP+FT+E+ K +KG D NYY
Sbjct: 298 MDPLIR--GDYPLSMRGLV----------GNRLPQFTKEQSKLVKG----AFDFIGLNYY 341
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 143 bits (363), Expect = 2e-40
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
+GKV I LD + Y + S EDQ AA+R F +G + P+ + G YP I++ +V
Sbjct: 240 QGKVGIVLDFNWYEALS-NSTEDQAAAQRARDFHIGWYLDPLIN--GHYPQIMQDLV--- 293
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
+ RLP+FT E+ + +KGS D+ +N YT+ + P S D TY
Sbjct: 294 -------KDRLPKFTPEQARLVKGSADYIGINQYTASYMKGQQLMQQTPTSYSADWQVTY 346
Query: 223 SQ----DPNWPSSNSPWLK 237
P P +NS WL
Sbjct: 347 VFAKNGKPIGPQANSNWLY 365
Score = 57.5 bits (140), Expect = 7e-10
Identities = 18/31 (58%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
++KA +++ N+ GY AWS+LDNFEWL GYT
Sbjct: 422 LKKA-IDEGANVAGYFAWSLLDNFEWLSGYT 451
Score = 46.7 bits (112), Expect = 2e-06
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
P+ + G YP I++ +V + RLP+FT E+ + +KG + D N Y
Sbjct: 277 LDPLIN--GHYPQIMQDLV----------KDRLPKFTPEQARLVKG----SADYIGINQY 320
Query: 117 -PHNATSKEDQEAAERVFQ 134
++ + +
Sbjct: 321 TASYMKGQQLMQQTPTSYS 339
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 143 bits (364), Expect = 2e-40
Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
G + ITL S + P + K D +AA+R F LG F HP+ G YP +R +V
Sbjct: 246 NGIIGITLVSHWFEPAS-KEKADVDAAKRGLDFMLGWFMHPLTK--GRYPESMRYLV--- 299
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
R RLP+F+ EE K L GSFDF LN+Y+S A + NA P+I D
Sbjct: 300 -------RKRLPKFSTEESKELTGSFDFLGLNYYSSYYAAKAPRIPNARPAIQTDSLINA 352
Query: 223 SQD----PNWPSSNSPWLK 237
+ + P P + S WL
Sbjct: 353 TFEHNGKPLGPMAASSWLC 371
Score = 58.3 bits (142), Expect = 3e-10
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ A + D N+ GY AWS+ DN EW GYT
Sbjct: 430 VLTA-IGDGVNVKGYFAWSLFDNMEWDSGYT 459
Score = 46.8 bits (112), Expect = 2e-06
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 18/60 (30%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
HP+ G YP +R +V R RLP+F+ EE K L G + D NYY
Sbjct: 283 MHPLT--KGRYPESMRYLV----------RKRLPKFSTEESKELTG----SFDFLGLNYY 326
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 142 bits (361), Expect = 1e-39
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
+G++ I L+S P + + D +A +R F LG F P+ + GDYP +R++V
Sbjct: 265 EGEIGIVLNSMWMEPLS-DVQADIDAQKRALDFMLGWFLEPLTT--GDYPKSMRELV--- 318
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
+ RLP+F+ ++ + LKG +DF +N+YT+ + N +S++ S D T
Sbjct: 319 -------KGRLPKFSADDSEKLKGCYDFIGMNYYTATYVTNAVKSNSEKLSYETDDQVTK 371
Query: 223 SQD----PNWPSSNSPWLK 237
+ + P + W
Sbjct: 372 TFERNQKPIGHALYGGWQH 390
Score = 58.0 bits (141), Expect = 5e-10
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
++ A ++D N+ GY WS DNFEW GY
Sbjct: 449 VRDA-IDDGVNVKGYFVWSFFDNFEWNLGYI 478
Score = 46.8 bits (112), Expect = 3e-06
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 18/60 (30%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
P+ TGDYP +R++V + RLP+F+ ++ + LKG D NYY
Sbjct: 302 LEPLT--TGDYPKSMRELV----------KGRLPKFSADDSEKLKG----CYDFIGMNYY 345
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
PEST defense, family GH1, hydrolase, chloroplast,
transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Length = 512
Score = 141 bits (359), Expect = 1e-39
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 97 EEIKALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVR 156
+ K ++ + D P+ TS D++A ER + LG F P+ GDYP +R
Sbjct: 247 KHYKRDDTRIGLAFDVMGRVPYG-TSFLDKQAEERSWDINLGWFLEPVVR--GDYPFSMR 303
Query: 157 QIVDQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIIN 216
+ R RLP F +E+ + L GS++ LN+YTS N + S N P +
Sbjct: 304 SLA----------RERLPFFKDEQKEKLAGSYNMLGLNYYTSRFSKNIDISPNYSPVLNT 353
Query: 217 DRAATYSQ------DPNWPSSNSPWLK 237
D A + P P +PW+
Sbjct: 354 DDAYASQEVNGPDGKPIGPPMGNPWIY 380
Score = 58.0 bits (141), Expect = 5e-10
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
++++ ++ N+ GY AWS+LDNFEW G+T
Sbjct: 441 LKES-IDLGSNVQGYFAWSLLDNFEWFAGFT 470
Score = 47.6 bits (114), Expect = 1e-06
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 19/95 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
P+ GDYP +R + R RLP F +E+ + L G + + NYY
Sbjct: 290 LEPVVR--GDYPFSMRSLA----------RERLPFFKDEQKEKLAG----SYNMLGLNYY 333
Query: 117 -PHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGD 150
+ + + V + + G
Sbjct: 334 TSRFSKNIDISPNYSPVLNTDDAYASQEVNGPDGK 368
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; 1.63A {Trichoderma reesei}
Length = 473
Score = 140 bits (355), Expect = 3e-39
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 100 KALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIV 159
+ G++ I L+ YP +A D+EAAER +F FA PIY GDYP +R+ +
Sbjct: 221 ASGDGQIGIVLNGDFTYPWDAADPADKEAAERRLEFFTAWFADPIYL--GDYPASMRKQL 278
Query: 160 DQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRA 219
RLP FT EE + GS DF+ +NHYTS I + + ++A ++ N
Sbjct: 279 ----------GDRLPTFTPEERALVHGSNDFYGMNHYTSNYIRHRSSPASADDTVGNVDV 328
Query: 220 ATYSQD--PNWPSSNSPWLK 237
++ P + SPWL+
Sbjct: 329 LFTNKQGNCIGPETQSPWLR 348
Score = 59.9 bits (146), Expect = 9e-11
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
M A+ D N+ GY AWS++DNFEW DGY
Sbjct: 407 MVTAVELDGVNVKGYFAWSLMDNFEWADGYV 437
Score = 46.1 bits (110), Expect = 4e-06
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 23/98 (23%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD------- 111
A PIY GDYP +R+ + RLP FT EE + G + D
Sbjct: 262 ADPIY--LGDYPASMRKQL----------GDRLPTFTPEERALVHG----SNDFYGMNHY 305
Query: 112 SSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAG 149
+SNY H ++ + V + I E
Sbjct: 306 TSNYIRHRSSPASADDTVGNVDVLFTNKQGNCIGPETQ 343
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 139 bits (353), Expect = 1e-38
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 19/141 (13%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
K+ + D Y P+ S D +A ER + +G F P+ GDYP +R ++
Sbjct: 299 DSKIGMAFDVMGYEPYQ-DSFLDDQARERSIDYNMGWFLEPVVR--GDYPFSMRSLI--- 352
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
RLP FT+EE + L S D LN+YTS + + S + P++ D A
Sbjct: 353 -------GDRLPMFTKEEQEKLASSCDIMGLNYYTSRFSKHVDMSPDFTPTLNTDDAYAS 405
Query: 223 SQ------DPNWPSSNSPWLK 237
S+ + P + + W+
Sbjct: 406 SETTGSDGNDIGPITGTYWIY 426
Score = 58.0 bits (141), Expect = 5e-10
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
++ A ++ ++ G+ W ++DNFEW GY+
Sbjct: 484 VKDA-IDQGADVRGHFTWGLIDNFEWSLGYS 513
Score = 46.9 bits (112), Expect = 2e-06
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
P+ GDYP +R ++ RLP FT+EE + L + D NYY
Sbjct: 336 LEPVVR--GDYPFSMRSLI----------GDRLPMFTKEEQEKLAS----SCDIMGLNYY 379
Query: 117 -PHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGD 150
+ + + G+
Sbjct: 380 TSRFSKHVDMSPDFTPTLNTDDAYASSETTGSDGN 414
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 139 bits (353), Expect = 1e-38
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
G++ + L+ P+ + DQ+A ER LG F P+ GDYP +R
Sbjct: 302 DGRIGLALNVFGRVPYT-NTFLDQQAQERSMDKCLGWFLEPVVR--GDYPFSMRVSA--- 355
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
R R+P F E+E + L GS+D +N+YTS + + S N P + D A
Sbjct: 356 -------RDRVPYFKEKEQEKLVGSYDMIGINYYTSTFSKHIDLSPNNSPVLNTDDAYAS 408
Query: 223 SQD------PNWPSSNSPWLK 237
+ P + + W+
Sbjct: 409 QETKGPDGNAIGPPTGNAWIN 429
Score = 58.0 bits (141), Expect = 5e-10
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
++++ ++ ++ GY AWS+LDNFEW GYT
Sbjct: 488 LKQS-IDLGADVRGYFAWSLLDNFEWSSGYT 517
Score = 47.2 bits (113), Expect = 2e-06
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
P+ GDYP +R R R+P F E+E + L G + D NYY
Sbjct: 339 LEPVVR--GDYPFSMRVSA----------RDRVPYFKEKEQEKLVG----SYDMIGINYY 382
Query: 117 -PHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGD 150
+ + V + G+
Sbjct: 383 TSTFSKHIDLSPNNSPVLNTDDAYASQETKGPDGN 417
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 137 bits (347), Expect = 4e-38
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
G++ ITLDS P++ + +EA R +F LG FA+PIY G+YPP +++I+
Sbjct: 224 GGQIGITLDSHWLIPYD-DTDASKEATLRAMEFKLGRFANPIYK--GEYPPRIKKIL--- 277
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
RLP FT EEI+ +KGS DFF LN YT+ L+ + S+ +
Sbjct: 278 -------GDRLPEFTPEEIELVKGSSDFFGLNTYTTHLVQDGG--SDELAGFVKTGHTRA 328
Query: 223 SQDPNWPSSNSPWLK 237
S+ WL+
Sbjct: 329 DGTQLGTQSDMGWLQ 343
Score = 60.2 bits (147), Expect = 8e-11
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ +A+ D ++ GY WS+LDNFEW +GY
Sbjct: 401 LLQAVTEDGADVRGYFGWSLLDNFEWAEGYK 431
Score = 46.4 bits (111), Expect = 3e-06
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
A+PIY G+YPP +++I+ RLP FT EEI+ +KG + D N Y
Sbjct: 261 ANPIYK--GEYPPRIKKIL----------GDRLPEFTPEEIELVKG----SSDFFGLNTY 304
Query: 117 -PHNATSKEDQEAAERVFQFTLGLFAHPIYSEAG 149
H E A V + +++
Sbjct: 305 TTHLVQDGGSDELAGFVKTGHTRADGTQLGTQSD 338
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 138 bits (349), Expect = 4e-38
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
+G++ I+ + P + S D EAA R F LG F PI S GDYP +++ V
Sbjct: 266 EGQIGISHATQWMEPWDENSASDVEAAARALDFMLGWFMEPITS--GDYPKSMKKFV--- 320
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAP--PSIINDRAA 220
SRLP+F+ E+ K LKGS+DF LN+YT+ + N + +S+ S D
Sbjct: 321 -------GSRLPKFSPEQSKMLKGSYDFVGLNYYTASYVTNASTNSSGSNNFSYNTDIHV 373
Query: 221 TYSQD----PNWPSSNSPWLK 237
TY D P P S S WL
Sbjct: 374 TYETDRNGVPIGPQSGSDWLL 394
Score = 59.2 bits (144), Expect = 2e-10
Identities = 17/31 (54%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+++A +ND N+ GY AWS+LDNFEW +GY
Sbjct: 453 VRQA-MNDGVNVKGYFAWSLLDNFEWGEGYG 482
Score = 47.7 bits (114), Expect = 1e-06
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
PI S GDYP +++ V SRLP+F+ E+ K LKG + D NYY
Sbjct: 304 MEPITS--GDYPKSMKKFV----------GSRLPKFSPEQSKMLKG----SYDFVGLNYY 347
Query: 117 -PHNATSKEDQEAAERVFQFTLGLFAHPIYSEAG 149
T+ + F + + G
Sbjct: 348 TASYVTNASTNSSGSNNFSYNTDIHVTYETDRNG 381
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 136 bits (344), Expect = 1e-37
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
G++ I D + P + + D EAA+R +F LG FA P + GDYP +R V
Sbjct: 241 NGQLGIAFDVMWFEPMSN-TTIDIEAAKRAQEFQLGWFADPFFF--GDYPATMRARV--- 294
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQS--SNAPPSIINDRAA 220
RLPRFT +E +KG+ DF +NHYT+ +NN + + + D
Sbjct: 295 -------GERLPRFTADEAAVVKGALDFVGINHYTTYYTRHNNTNIIGTLLNNTLADTGT 347
Query: 221 TYSQ----DPNWPSSNSPWLK 237
P +NS WL
Sbjct: 348 VSLPFKNGKPIGDRANSIWLY 368
Score = 61.4 bits (150), Expect = 3e-11
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ ++ D C++ GY AWS+LDN+EW GY+
Sbjct: 427 LAASIKEDGCDVRGYFAWSLLDNWEWAAGYS 457
Score = 46.0 bits (110), Expect = 4e-06
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 18/60 (30%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
A P + GDYP +R V RLPRFT +E +KG LD N+Y
Sbjct: 278 ADPFF--FGDYPATMRARV----------GERLPRFTADEAAVVKG----ALDFVGINHY 321
>1e4m_M Myrosinase MA1; hydrolase, family 1 glycosyl hydrolase,
glucosinolate, TIM B; HET: NAG FUC BMA MAN; 1.2A
{Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M*
1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M*
2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M*
1myr_A*
Length = 501
Score = 134 bits (340), Expect = 5e-37
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 24/153 (15%)
Query: 97 EEIKALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVR 156
+ GK+ T+ + + P+N T + A ER+ +F LG F P+ + G YP I+
Sbjct: 243 KNYTHQGGKIGPTMITRWFLPYNDTDRHSIAATERMKEFFLGWFMGPLTN--GTYPQIMI 300
Query: 157 QIVDQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAP-PSII 215
V RLP F+ EE +KGS+DF LN+Y + + N+ + +
Sbjct: 301 DTV----------GERLPSFSPEESNLVKGSYDFLGLNYYFTQYAQPSPNPVNSTNHTAM 350
Query: 216 NDRAATYS-----------QDPNWPSSNSPWLK 237
D A + + ++ +
Sbjct: 351 MDAGAKLTYINASGHYIGPLFEKDKADSTDNIY 383
Score = 62.6 bits (153), Expect = 1e-11
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ K + N+ GY AW++ DN+E+ G+T
Sbjct: 440 LNKVIKEKDVNVKGYLAWALGDNYEFNKGFT 470
Score = 46.1 bits (110), Expect = 4e-06
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 18/60 (30%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
P+ G YP I+ V RLP F+ EE +KG + D NYY
Sbjct: 287 MGPLT--NGTYPQIMIDTV----------GERLPSFSPEESNLVKG----SYDFLGLNYY 330
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 113 bits (285), Expect = 2e-29
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 18/133 (13%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
G++ I ++S P+ +KED EA RV ++ + PIY G+YP +
Sbjct: 213 SGEIGIAPNTSWAVPYR-RTKEDMEACLRVNGWSGDWYLDPIYF--GEYPKFMLDWY--- 266
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
P + +++ + DF +N+YTS + N P ++
Sbjct: 267 -----ENLGYKPPIVDGDMELIHQPIDFIGINYYTSSMNRYN-------PGEAGGMLSSE 314
Query: 223 SQDPNWPSSNSPW 235
+ P ++ W
Sbjct: 315 AISMGAPKTDIGW 327
Score = 55.6 bits (135), Expect = 3e-09
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+A + D N+ GY WS++DNFEW +GY
Sbjct: 385 ASRA-IEDGINLKGYMEWSLMDNFEWAEGYG 414
Score = 39.0 bits (92), Expect = 8e-04
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKV 106
PIY G+YP + P + +++ + +
Sbjct: 250 LDPIY--FGEYPKFMLDWY--------ENLGYKPPIVDGDMELIHQPI 287
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 107 bits (271), Expect = 2e-27
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 24/134 (17%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQF-TLGLFAHPIYSEAGDYPPIVRQIVDQ 161
GK+ I ++ + P + +ED A + QF LF +PIY GDYP +V +
Sbjct: 236 DGKIGIVFNNGYFEPAS-EKEEDIRAVRFMHQFNNYPLFLNPIYR--GDYPELVLEFA-- 290
Query: 162 NSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAAT 221
R LP ++++ ++ DF LN+Y+ L+ + + A
Sbjct: 291 --------REYLPENYKDDMSEIQEKIDFVGLNYYSGHLVKFDP----------DAPAKV 332
Query: 222 YSQDPNWPSSNSPW 235
+ + P + W
Sbjct: 333 SFVERDLPKTAMGW 346
Score = 55.6 bits (135), Expect = 3e-09
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
KA + + + GY WS+LDNFEW +GY+
Sbjct: 404 AWKA-IQEGVPLKGYFVWSLLDNFEWAEGYS 433
Score = 38.3 bits (90), Expect = 0.001
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKV 106
+PIY GDYP +V + R LP ++++ ++ K+
Sbjct: 274 LNPIY--RGDYPELVLEFA----------REYLPENYKDDMSEIQEKI 309
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 106 bits (268), Expect = 4e-27
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
G++ ITL+ S Y ++ +ED AA R + F G YP + +I
Sbjct: 214 DGQIGITLNLSTCYSNS-ADEEDIAAAHRSDGWNNRWFLDAALK--GTYPEDMIKIF--- 267
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
+ +P +E + + DF +N+YT ++ NN+++ S+
Sbjct: 268 -----SDTNIMPELPKELFTEVFETSDFLGINYYTRQVVKNNSEAFIGAESV-------- 314
Query: 223 SQDPNWPSSNSPW 235
+ P + W
Sbjct: 315 --AMDNPKTEMGW 325
Score = 53.7 bits (130), Expect = 1e-08
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
A + + GY WS +DNFEW +GY
Sbjct: 383 ALSA-IEAGVPLKGYYIWSFMDNFEWAEGYE 412
Score = 37.1 bits (87), Expect = 0.004
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 10/48 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKV 106
G YP + +I + +P +E +
Sbjct: 251 LDAAL--KGTYPEDMIKIF--------SDTNIMPELPKELFTEVFETS 288
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A
{Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A*
2o9r_A*
Length = 454
Score = 106 bits (266), Expect = 9e-27
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 100 KALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIV 159
K L GK+ ITL+ + + ED AA R F FA P+++ G YP + +
Sbjct: 218 KGLTGKIGITLNMEHVDAAS-ERPEDVAAAIRRDGFINRWFAEPLFN--GKYPEDMVEWY 274
Query: 160 DQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRA 219
G + L +++ ++ DF +N+YT +I + N +S ++
Sbjct: 275 -------GTYLNGLDFVQPGDMELIQQPGDFLGINYYTRSIIRSTNDASLLQVEQVH--- 324
Query: 220 ATYSQDPNWPSSNSPW 235
P ++ W
Sbjct: 325 ------MEEPVTDMGW 334
Score = 54.4 bits (132), Expect = 6e-09
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ + + + GY WS LDNFEW GY+
Sbjct: 392 CHRF-IEEGGQLKGYFVWSFLDNFEWAWGYS 421
Score = 34.8 bits (81), Expect = 0.022
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKV 106
A P++ G YP + + G + L +++ ++
Sbjct: 258 AEPLF--NGKYPEDMVEWY-------GTYLNGLDFVQPGDMELIQQPG 296
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 103 bits (260), Expect = 6e-26
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 20/133 (15%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
G++ I + S P++ TS+ED+ A R F PIY G YP +
Sbjct: 213 SGQIGIAPNVSWAVPYS-TSEEDKAACARTISLHSDWFLQPIYQ--GSYPQFLVDWF--- 266
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
+ + ++ + D +N+Y+ + N ++ IN
Sbjct: 267 -----AEQGATVPIQDGDMDIIGEPIDMIGINYYSMSVNRFNPEAGFLQSEEIN------ 315
Query: 223 SQDPNWPSSNSPW 235
P ++ W
Sbjct: 316 ---MGLPVTDIGW 325
Score = 54.8 bits (133), Expect = 5e-09
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ + ++D ++ GY AWS+LDNFEW +GY
Sbjct: 381 VHRT-IHDGLHVKGYMAWSLLDNFEWAEGYN 410
Score = 33.6 bits (78), Expect = 0.041
Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 10/48 (20%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKV 106
PIY G YP + + + ++ + +
Sbjct: 250 LQPIY--QGSYPQFLVDWF--------AEQGATVPIQDGDMDIIGEPI 287
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 103 bits (260), Expect = 8e-26
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 21/143 (14%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
+ S+TL+ + P S D +A R+ +F P+ G YP + +
Sbjct: 227 DAQCSVTLNIHHVRPLT-DSDADADAVRRIDALANRVFTGPMLQ--GAYPEDLVKDT--- 280
Query: 163 SAKEGRARSRLPRFT-EEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAAT 221
A F + +++ DF +N+Y+ L++ + S A +
Sbjct: 281 ------AGLTDWSFVRDGDLRLAHQKLDFLGVNYYSPTLVSEADGSGTHNSDGHGRSAHS 334
Query: 222 Y--------SQDPNWPSSNSPWL 236
P ++ W
Sbjct: 335 PWPGADRVAFHQPPGETTAMGWA 357
Score = 54.5 bits (132), Expect = 8e-09
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ +A + D ++ GY WS+LDNFEW GY+
Sbjct: 414 VHRA-IKDGSDVRGYFLWSLLDNFEWAHGYS 443
Score = 29.8 bits (68), Expect = 0.75
Identities = 15/102 (14%), Positives = 22/102 (21%), Gaps = 17/102 (16%)
Query: 59 AHPIYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLD--SSNYY 116
P+ G YP + + A F + L LD NYY
Sbjct: 264 TGPML--QGAYPEDLVKDT---------AGLTDWSFVRDGDLRL---AHQKLDFLGVNYY 309
Query: 117 -PHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQ 157
P + + P + P
Sbjct: 310 SPTLVSEADGSGTHNSDGHGRSAHSPWPGADRVAFHQPPGET 351
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 99.5 bits (249), Expect = 2e-24
Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
G++ ITL+ + YP S++D +AA + + F P++ G YP + I
Sbjct: 221 PGEIGITLNLTPAYPAG-DSEKDVKAASLLDDYINAWFLSPVFK--GSYPEELHHIY--- 274
Query: 163 SAKEGRARSRLPRFT--EEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAA 220
L FT ++ + DF +N+Y+ +++ + + ++
Sbjct: 275 -------EQNLGAFTTQPGDMDIISRDIDFLGINYYSRMVVRHKPGDNLFNAEVVK---- 323
Query: 221 TYSQDPNWPSSNSPW 235
+ PS+ W
Sbjct: 324 ----MEDRPSTEMGW 334
Score = 54.0 bits (131), Expect = 1e-08
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
KA + D + GY WS++DNFEW GY+
Sbjct: 392 AYKA-LKDGVPLRGYYVWSLMDNFEWAYGYS 421
>1pbg_A PGAL, 6-phospho-beta-D-galactosidase; hydrolase (glycosyl
hydrolase); 2.30A {Lactococcus lactis} SCOP: c.1.8.4
PDB: 3pbg_A 2pbg_A 4pbg_A*
Length = 468
Score = 99.6 bits (249), Expect = 2e-24
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 12/146 (8%)
Query: 100 KALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIV 159
K KG++ + YP++ + D AAE Y G Y + V
Sbjct: 206 KGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYL--GHYSDKTMEGV 263
Query: 160 DQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRA 219
+ A+ G + + A K DF +N+Y S + + + + ++
Sbjct: 264 NHILAENGGELDLRD-EDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKG 322
Query: 220 ATYSQ---------DPNWPSSNSPWL 236
++ Q P ++ W+
Sbjct: 323 SSKYQIKGVGRRVAPDYVPRTDWDWI 348
Score = 53.0 bits (128), Expect = 2e-08
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ A + D N+ GY WS++D F W +GY
Sbjct: 405 LSDA-IADGANVKGYFIWSLMDVFSWSNGYE 434
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A
{Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A*
Length = 465
Score = 97.2 bits (243), Expect = 2e-23
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 24/133 (18%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
++ ITL+ + YP + D EAA R+ F LF P+ G Y
Sbjct: 235 GSQMGITLNFNTIYPVS-AEPADVEAARRMHSFQNELFLEPLIR--GQYNQATLMAYPN- 290
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
E+++ + DF +N+Y + + ++ Q
Sbjct: 291 ---------LPEFIAPEDMQTISAPIDFLGVNYYNPMRVKSSPQPPGIEVV--------- 332
Query: 223 SQDPNWPSSNSPW 235
P + W
Sbjct: 333 --QVESPVTAMGW 343
Score = 54.1 bits (131), Expect = 8e-09
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
++A + D ++ GY AWS+LDNFEW +GY+
Sbjct: 401 ARRA-LADGVDLRGYYAWSLLDNFEWAEGYS 430
>4eam_A Lactase, beta-galactosidase; glycoside hydrolase, chemical biology,
allosteric activation switchable enzyme, chemical
rescue; 1.70A {Sulfolobus solfataricus P2} PDB: 4ean_A
1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A*
1gow_A 1uwi_A
Length = 489
Score = 90.0 bits (224), Expect = 5e-21
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 27/140 (19%)
Query: 97 EEIKAL-KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIV 155
+ IK++ K V I +S++ P + +D EA E F I G+
Sbjct: 248 DGIKSVSKKPVGIIYANSSFQPL---TDKDMEAVEMAENDNRWWFFDAIIR--GEITRGN 302
Query: 156 RQIVDQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSII 215
+IV + LKG D+ +N+YT ++ + +
Sbjct: 303 EKIVRDD---------------------LKGRLDWIGVNYYTRTVVKRTEKGYVSLGGYG 341
Query: 216 NDRAATYSQDPNWPSSNSPW 235
+ P+S+ W
Sbjct: 342 HGCERNSVSLAGLPTSDFGW 361
Score = 54.2 bits (131), Expect = 9e-09
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ +A +N ++ GY WS+ DN+EW G++
Sbjct: 409 VHRA-INSGADVRGYLHWSLADNYEWASGFS 438
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A
{Thermosphaera aggregans} SCOP: c.1.8.4
Length = 481
Score = 89.3 bits (222), Expect = 1e-20
Identities = 16/140 (11%), Positives = 31/140 (22%), Gaps = 30/140 (21%)
Query: 97 EEIKAL-KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIV 155
+ IK K V + + E ++ L F + G
Sbjct: 250 DNIKRFSKKPVGLIYAFQWFELLEG----PAEVFDKFKSSKLYYFTDIVSK--GSSI--- 300
Query: 156 RQIVDQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSII 215
E + L D+ +N+Y+ ++ +
Sbjct: 301 --------------------INVEYRRDLANRLDWLGVNYYSRLVYKIVDDKPIILHGYG 340
Query: 216 NDRAATYSQDPNWPSSNSPW 235
P S+ W
Sbjct: 341 FLCTPGGISPAENPCSDFGW 360
Score = 55.4 bits (134), Expect = 3e-09
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ KA N+ + GY WS+ DN+EW G+
Sbjct: 408 VWKA-ANEGIPVKGYLHWSLTDNYEWAQGFR 437
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural
genomics/PR initiative, RSGI, structural genomics,
hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4
PDB: 1np2_A
Length = 431
Score = 87.9 bits (219), Expect = 2e-20
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 31/133 (23%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
+V I L+ + Y ED EA + ++ F PI YP
Sbjct: 211 ARRVGIVLNFAPAYG------EDPEAVDVADRYHNRFFLDPILG--KGYPESPF------ 256
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
R +P +++ + DF +N+Y + +A +
Sbjct: 257 -----RDPPPVP-ILSRDLELVARPLDFLGVNYYAPVRVAPGTGTLPVRY---------- 300
Query: 223 SQDPNWPSSNSPW 235
P P++ W
Sbjct: 301 -LPPEGPATAMGW 312
Score = 53.6 bits (130), Expect = 1e-08
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+A + ++ GY WS++DNFEW GYT
Sbjct: 369 ALRA-REEGVDLRGYFVWSLMDNFEWAFGYT 398
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme,
thermostability, TIM barrel, alkylglucosides; 2.50A
{Pyrococcus horikoshii} SCOP: c.1.8.4
Length = 423
Score = 69.5 bits (171), Expect = 5e-14
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 33/133 (24%)
Query: 103 KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIVRQIVDQN 162
K KV I + P + + D++AAE+ F I+S G Y + +
Sbjct: 200 KFKVGIVKNIPIILPAS-DKERDRKAAEKADNLFNWHFLDAIWS--GKYRGVFK------ 250
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATY 222
+ + DF +N+YT+ + + +
Sbjct: 251 -----------------TYRIPQSDADFIGVNYYTASEVRHTWNPLKFFFEV-------K 286
Query: 223 SQDPNWPSSNSPW 235
D + + W
Sbjct: 287 LADISERKTQMGW 299
Score = 50.6 bits (122), Expect = 1e-07
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ KA + D ++ GY WS +DN+EW +G+
Sbjct: 346 VHKA-IEDGLDVRGYFYWSFMDNYEWKEGFG 375
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis;
2.35A {Pyrococcus furiosus}
Length = 473
Score = 56.5 bits (137), Expect = 2e-09
Identities = 16/140 (11%), Positives = 33/140 (23%), Gaps = 43/140 (30%)
Query: 97 EEIKAL-KGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAGDYPPIV 155
+ IK + V + + + P +D+ R + H
Sbjct: 250 DAIKEYSEKSVGVIYAFAWHDPLA-EEYKDEVEEIRKKDYEFVTILHS------------ 296
Query: 156 RQIVDQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSII 215
KG D+ +N+Y+ ++ + P
Sbjct: 297 -----------------------------KGKLDWIGVNYYSRLVYGAKDGHLVPLPGYG 327
Query: 216 NDRAATYSQDPNWPSSNSPW 235
P+S+ W
Sbjct: 328 FMSERGGFAKSGRPASDFGW 347
Score = 54.2 bits (131), Expect = 8e-09
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 1 MQKALVNDKCNIIGYTAWSILDNFEWLDGYT 31
+ A + + ++ GY WS+ DN+EW G+
Sbjct: 395 VYNA-MKEGADVRGYLHWSLTDNYEWAQGFR 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 5e-04
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 37/138 (26%)
Query: 45 PAGSWVPISMI-SKSAHPIYSETGDYPPI----VRQIVDQNSAKEGRARSRLPRFTEEEI 99
PAG V IS++ + +G PP + + + A G +SR+P F+E
Sbjct: 361 PAGKQVEISLVNGAKNLVV---SG--PPQSLYGLNLTLRKAKAPSGLDQSRIP-FSER-- 412
Query: 100 KALKGKVSITLDSSNYYP-----H-----NATSKEDQEAAERVFQFTLGLFAHPIYS-EA 148
K+ S+ + P H A+ +++ + F P+Y
Sbjct: 413 -----KLKF---SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 149 G-DY----PPIVRQIVDQ 161
G D I +IVD
Sbjct: 465 GSDLRVLSGSISERIVDC 482
Score = 31.2 bits (70), Expect = 0.40
Identities = 19/155 (12%), Positives = 42/155 (27%), Gaps = 54/155 (34%)
Query: 62 IYSETGDYPPIVRQIVDQNSAKEGRARSRLPRFTEEEIKALKGKVSITLDSSNYYPH--- 118
+Y Y +V ++ + L + TLD+ +
Sbjct: 176 LYQ---TYHVLVGDLIK-------FSAETLSEL-----------IRTTLDAEKVFTQGLN 214
Query: 119 ------NATSKEDQE----AAERVFQFTL-GL--FAH-PIYSEAGDYPPIVRQIVDQNSA 164
N ++ D++ L G+ AH + ++ + P ++
Sbjct: 215 ILEWLENPSNTPDKDYLLSIP---ISCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLKG 269
Query: 165 KEGRARSRL-----------PRFTEEEIKALKGSF 188
G ++ + F KA+ F
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.004
Identities = 24/254 (9%), Positives = 68/254 (26%), Gaps = 70/254 (27%)
Query: 5 LVNDKCNIIGYTAWSILDNFE----WLDGYTISQADDLRSLGSPPAGSWVPISMISKSAH 60
+ D C ++ + + WL + + ++ + M+ K +
Sbjct: 166 VALDVCL-----SYKVQCKMDFKIFWL---NLKNCNSPETV----------LEMLQKLLY 207
Query: 61 ---PIYSETGDYPPIVRQIVDQNSAKEGRAR----SRLPR--------FTEEEIKALKGK 105
P ++ D+ ++ +S + R + A
Sbjct: 208 QIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 106 VSI---TLDSS--NYYPHNATSKEDQEAAERVF--QFTLGLFAHPIYSEAGDYPPIVRQI 158
I T ++ T+ + L + D P ++
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EV 322
Query: 159 VDQN---------SAKEGRARS-RLPRFTEEEI-KALKGSFDFFALN------HYTSILI 201
+ N S ++G A +++ ++ S + L + + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKMFDRLSV 380
Query: 202 ANNNQSSNAPPSII 215
+ ++ P ++
Sbjct: 381 FPPS--AHIPTILL 392
>2xhy_A BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, glycosidase;
2.30A {Escherichia coli}
Length = 479
Score = 36.3 bits (85), Expect = 0.006
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 21/117 (17%)
Query: 104 GKVSITLDSSNYYPHNATSK-EDQEAAERVFQFTLGLFAHPIYSEA---GDYPPIVRQIV 159
KV L YP + +D A+ + ++++ G YP V
Sbjct: 236 MKVGCMLAMVPLYP--YSCNPDDVMFAQESMRERY------VFTDVQLRGYYPSYVLNEW 287
Query: 160 DQNSAKEGRARSRLPRFTEEEIKALK-GSFDFFALNHYTSILIANNNQSSNAPPSII 215
++ + + ++ L+ G+ D+ ++Y + + + +A
Sbjct: 288 ERRGFN--------IKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFE 336
Score = 35.5 bits (83), Expect = 0.012
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 1 MQKALVNDKCNIIGYTAWSILD 22
M+KA+ D +++GYT W +D
Sbjct: 408 MKKAVTYDGVDLMGYTPWGCID 429
>3qom_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, glycoside
hydrolase, hydrolase; HET: BGC; 1.50A {Lactobacillus
plantarum}
Length = 481
Score = 35.2 bits (82), Expect = 0.016
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 1 MQKALVNDKCNIIGYTAWSILD 22
++ A++ D ++IGYT W +D
Sbjct: 409 IKLAVLEDGVDLIGYTPWGCID 430
Score = 35.2 bits (82), Expect = 0.017
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 21/111 (18%)
Query: 104 GKVSITLDSSNYYPHNATSK-EDQEAAERVFQFTLGLFAHPIYSEA---GDYPPIVRQIV 159
++ + YP T+ D A+R Q +++ G YP +R
Sbjct: 239 FQIGCMIAMCPIYP--LTAAPADVLFAQRAMQTRF------YFADVHCNGTYPQWLRNRF 290
Query: 160 DQNSAKEGRARSRLPRFTEEEIKALK-GSFDFFALNHYTSILIANNNQSSN 209
+ T E++K L+ G+ D+ ++Y S + + + +
Sbjct: 291 ESEHFN--------LDITAEDLKILQAGTVDYIGFSYYMSFTVKDTGKLAY 333
>4dde_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology,
protein structure initiati midwest center for structural
genomics, MCSG; HET: BG6; 1.45A {Streptococcus mutans}
PDB: 3pn8_A* 4f66_A* 4f79_A*
Length = 480
Score = 35.2 bits (82), Expect = 0.018
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MQKALVNDKCNIIGYTAWSILD 22
M KA+ D ++GYT W +D
Sbjct: 409 MIKAVDEDGVELMGYTPWGCID 430
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.11
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 17/44 (38%)
Query: 178 EEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAAT 221
++ +K L+ S +A +AP I AT
Sbjct: 19 KQALKKLQASLKLYA--------------DDSAPALAIK---AT 45
Score = 28.8 bits (63), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 96 EEEIKALKGKVSITL---DSSNYYPH---NAT 121
++ +K L+ S+ L DS+ P AT
Sbjct: 19 KQALKKLQA--SLKLYADDSA---PALAIKAT 45
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 29.9 bits (66), Expect = 0.71
Identities = 8/66 (12%), Positives = 17/66 (25%)
Query: 165 KEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSILIANNNQSSNAPPSIINDRAATYSQ 224
R S +F + + ++I N Q + ++ A
Sbjct: 212 AGTRKCSVNLKFGVNIRDLDNVTTTVESDASNPFVVITNECQWEGSAGVLLKKDAFDGQL 271
Query: 225 DPNWPS 230
+ W
Sbjct: 272 EITWAQ 277
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 26.6 bits (59), Expect = 2.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFFALNHY 196
S+ A + + E++ ALKGS F N +
Sbjct: 2 SSGSSGASIYKNKKSHEQLSALKGS---FCRNQF 32
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 26.7 bits (60), Expect = 5.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 174 PRFTEEEIKALKGSFDFF 191
P+ +++EI LK F+ F
Sbjct: 1 PKLSQDEIDDLKDVFELF 18
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
a.4.1.3
Length = 105
Score = 25.8 bits (56), Expect = 6.5
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 162 NSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSIL 200
+ E R F+ E++AL + + + +
Sbjct: 2 SHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVK 40
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 27.2 bits (59), Expect = 6.8
Identities = 9/71 (12%), Positives = 27/71 (38%)
Query: 90 RLPRFTEEEIKALKGKVSITLDSSNYYPHNATSKEDQEAAERVFQFTLGLFAHPIYSEAG 149
++P+ E L G++ T + E+++ + + + ++ +
Sbjct: 65 KIPKDVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPFASRFVFEKKR 124
Query: 150 DYPPIVRQIVD 160
+ P ++ I D
Sbjct: 125 ETPKLIINIKD 135
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.4 bits (59), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 27 LDGY--TISQADDLRSLGSPP 45
LDGY + SQA L +L P
Sbjct: 89 LDGYPRSYSQAMALETLEIRP 109
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 26.0 bits (58), Expect = 8.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 163 SAKEGRARSRLPRFTEEEIKALKGSFDFF 191
+ ++ AR+ L +EE I K +FD F
Sbjct: 4 TDQQAEARAFL---SEEMIAEFKAAFDMF 29
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding
protein; NMR {Oryza sativa}
Length = 122
Score = 25.9 bits (56), Expect = 8.3
Identities = 5/42 (11%), Positives = 15/42 (35%)
Query: 159 VDQNSAKEGRARSRLPRFTEEEIKALKGSFDFFALNHYTSIL 200
+ ++ + R FT E++ L + + + +
Sbjct: 17 LSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVK 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.388
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,700,009
Number of extensions: 211641
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 106
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)