BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14904
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DTS|A Chain A, Crystal Structure Of An Atp Dependent Carboxylase,
Dethiobiotin Synthase, At 1.65 Angstroms Resolution
Length = 221
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 97/208 (46%), Gaps = 4/208 (1%)
Query: 8 HYFXXXXXXXXXXXXXSCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
YF SCALL K G G KP+ASG+ + N D L +
Sbjct: 4 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGL--RNSDALALQR 61
Query: 68 YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
S+ ++ +NPY F P SP+ S E R I + + L D +++EG GG
Sbjct: 62 NSSLQLDYAT-VNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 120
Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
+ P D AD + LP+ILV+ +K+GCIN+A+L+ + I GL L GWVAN
Sbjct: 121 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 180
Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYL 215
A E LT+ + LG IP+L
Sbjct: 181 PGKRHA-EYMTTLTRMIPAPLLGEIPWL 207
>pdb|1DAM|A Chain A, Dethiobiotin Synthetase Complexed With Dethiobiotin, Adp,
Inorganic Phosphate And Magnesium
pdb|1BS1|A Chain A, Dethiobiotin Synthetase Complexed With Dethiobiotin, Adp ,
Inorganic Phosphate And Magnesium
pdb|1DAK|A Chain A, Dethiobiotin Synthetase From Escherichia Coli, Complex
Reaction Intermediate Adp And Mixed Anhydride
pdb|1A82|A Chain A, Dethiobiotin Synthetase From Escherichia Coli, Complex
With Substrates Atp And Diaminopelargonic Acid
pdb|1BYI|A Chain A, Structure Of Apo-dethiobiotin Synthase At 0.97 Angstroms
Resolution
pdb|1DAD|A Chain A, Dethiobiotin Synthetase Complexed With Adp
pdb|1DAE|A Chain A, Dethiobiotin Synthetase Complexed With 3-(1-Aminoethyl)
Nonanedioic Acid
pdb|1DAF|A Chain A, Dethiobiotin Synthetase Complexed With 7-(Carboxyamino)-8-
Amino-Nonanoic Acid, Adp, And Calcium
pdb|1DAG|A Chain A, Dethiobiotin Synthetase Complexed With
7-(Carboxyamino)-8-Amino- Nonanoic Acid And
5'-Adenosyl-Methylene-Triphosphate
pdb|1DAH|A Chain A, Dethiobiotin Synthetase Complexed With
7,8-Diamino-Nonanoic Acid,
5'-Adenosyl-Methylene-Triphosphate, And Manganese
pdb|1DAI|A Chain A, Dethiobiotin Synthetase Complexed With
7-(Carboxyamino)-8-Amino- Nonanoic Acid
pdb|1DBS|A Chain A, Mechanistic Implications And Family Relationships From The
Structure Of Dethiobiotin Synthetase
Length = 224
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 97/208 (46%), Gaps = 4/208 (1%)
Query: 8 HYFXXXXXXXXXXXXXSCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
YF SCALL K G G KP+ASG+ + N D L +
Sbjct: 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGL--RNSDALALQR 60
Query: 68 YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
S+ ++ +NPY F P SP+ S E R I + + L D +++EG GG
Sbjct: 61 NSSLQLDYAT-VNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 119
Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
+ P D AD + LP+ILV+ +K+GCIN+A+L+ + I GL L GWVAN
Sbjct: 120 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 179
Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYL 215
A E LT+ + LG IP+L
Sbjct: 180 PGKRHA-EYMTTLTRMIPAPLLGEIPWL 206
>pdb|3OF5|A Chain A, Crystal Structure Of A Dethiobiotin Synthetase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3OF5|B Chain B, Crystal Structure Of A Dethiobiotin Synthetase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 228
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 24 SCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDV-NLLNKYSNSLYEFTKL-INP 81
S L+ + + I + +KP+ASG ++ EDV ++LN Y ++FT IN
Sbjct: 22 STKLIEVCEHQNIKSLCLKPVASGQSQFSE----LCEDVESILNAYK---HKFTAAEINL 74
Query: 82 YLFKYPISPY---TSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENS 138
F ++P+ + ++ I N I Y +L D++ +EG GG P+ D+
Sbjct: 75 ISFNQAVAPHIIAAKTKVDISIENLKQFIE-DKYNQDL-DILFIEGAGGLLTPYSDHTTQ 132
Query: 139 ADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVAN 183
DL + L +P++LV +K+GCIN+ LL++ +N +KL GW+AN
Sbjct: 133 LDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIAN 177
>pdb|3MLE|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|B Chain B, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|C Chain C, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|D Chain D, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|E Chain E, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|F Chain F, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3QXC|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Atp
pdb|3QXH|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Adp And
8-Aminocaprylic Acid
pdb|3QXJ|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gtp
pdb|3QXS|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Anp
pdb|3QXX|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gdp And
8-Aminocaprylic Acid
pdb|3QY0|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gdp
Length = 242
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 24 SCA-LLSEF-KKRGISCIGMKPIASG---AYLNNKNKIWFNEDVNLLNKYSN----SLYE 74
+CA LL+++ G+ I +KPI +G A ++ + F +D LL++ S Y
Sbjct: 37 TCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYR 96
Query: 75 FTKLINPYLFKY---PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVP 131
+ K+ P + + P +P + NL R+ N + D++I+EG GG VP
Sbjct: 97 YHKVSAPLIAQQEEDPNAPIDTDNLTQRLHN----------FTKTYDLVIVEGAGGLCVP 146
Query: 132 FHDNENSADLAEKLGLPIILVIDLKIGCINNALL 165
EN D A KL ++L+ +G IN+ LL
Sbjct: 147 ITLEENMLDFALKLKAKMLLISHDNLGLINDCLL 180
>pdb|2QMO|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori
Length = 220
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 24 SCA-LLSEF-KKRGISCIGMKPIASG---AYLNNKNKIWFNEDVNLLNKYSN----SLYE 74
+CA LL+++ G+ I +KPI +G A ++ + F +D LL++ S Y
Sbjct: 17 TCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYR 76
Query: 75 FTKLINPYLFKY---PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVP 131
+ K+ P + + P +P + NL R+ N + D++I+EG GG VP
Sbjct: 77 YHKVSAPLIAQQEEDPNAPIDTDNLTQRLHN----------FTKTYDLVIVEGAGGLCVP 126
Query: 132 FHDNENSADLAEKLGLPIILVIDLKIGCINNALL 165
EN D A KL +L+ +G IN+ LL
Sbjct: 127 ITLEENXLDFALKLKAKXLLISHDNLGLINDCLL 160
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 35.8 bits (81), Expect = 0.023, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 82 YLFKYPISPYTSSNLENRIINTSHIINCYNYL----------SNLTDVIIL-EGIGGFSV 130
Y ++ ISP+ ++ EN + S ++ S +D++ L E GG +
Sbjct: 156 YAWEAAISPHLAAERENATVEDSVVLQMIEKCLKEEMECGVKSEKSDLLCLVETAGGVAS 215
Query: 131 PFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT 190
P DL LP ILV D ++G I+ + + E++ RG + V +V
Sbjct: 216 PGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLV-- 273
Query: 191 LFANENYIELTKYL 204
N + LT YL
Sbjct: 274 -----NEVPLTSYL 282
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 35.4 bits (80), Expect = 0.025, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 82 YLFKYPISPYTSSNLENRIINTSHIIN----CYN------YLSNLTDVIIL-EGIGGFSV 130
Y ++ ISP+ ++ EN + S ++ C S +D++ L E GG +
Sbjct: 156 YAWEAAISPHLAAERENATVEDSVVLQXIEKCLKEEXECGVKSEKSDLLCLVETAGGVAS 215
Query: 131 PFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT 190
P DL LP ILV D ++G I+ + + E++ RG + V +V
Sbjct: 216 PGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLV-- 273
Query: 191 LFANENYIELTKYL 204
N + LT YL
Sbjct: 274 -----NEVPLTSYL 282
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 37 SCIG-MKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSN 95
+C G + + G +L+ + F E + L+ YEF + P+ +
Sbjct: 34 ACAGQVGELVVGEFLDEGALLRFAEGLALVT------YEFENV--------PVE--AARR 77
Query: 96 LENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAE---KLGLPIILV 152
LE R+ L + +G+G + PFH + DL E ++GLP +L
Sbjct: 78 LEGRLPLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVGLPALLK 137
Query: 153 I-----DLK----IGCINNALLSLEAINSRGLKLIGWV 181
D K + AL +L+A+ RGL L G+V
Sbjct: 138 TRRGGYDGKGQALVRTEEEALEALKALGGRGLILEGFV 175
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 128 FSVPFHDNENSADLA---EKLGLPIILVIDLKIGCINNALLSLEAINSRG 174
S PF D E +LA E I VID +IG N A + +E I G
Sbjct: 191 LSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEG 240
>pdb|2EC1|A Chain A, Solution Structure Of The Ranbd1 Domain From Human
Nucleoporin 50 Kda
Length = 125
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 30 EFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
EFK++GI + +KP A N K ++ D NL N
Sbjct: 29 EFKEKGIGTLHLKPTA-----NQKTQLLVRADTNLGN 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,633,588
Number of Sequences: 62578
Number of extensions: 272282
Number of successful extensions: 673
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 29
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)