Query psy14904
Match_columns 233
No_of_seqs 154 out of 1252
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:48:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0132 BioD Dethiobiotin synt 100.0 4.3E-38 9.4E-43 249.1 23.2 219 5-230 1-219 (223)
2 PRK12374 putative dithiobiotin 100.0 1.3E-34 2.9E-39 234.5 24.4 219 5-231 1-219 (231)
3 PF13500 AAA_26: AAA domain; P 100.0 1.2E-34 2.5E-39 230.1 21.5 199 7-222 1-199 (199)
4 PRK00090 bioD dithiobiotin syn 100.0 3.7E-34 8E-39 230.9 24.7 217 8-231 1-218 (222)
5 TIGR00347 bioD dethiobiotin sy 100.0 6.1E-28 1.3E-32 186.2 20.5 166 10-183 1-166 (166)
6 PRK00784 cobyric acid synthase 100.0 1.9E-27 4.2E-32 211.4 21.5 212 5-222 1-234 (488)
7 PLN02974 adenosylmethionine-8- 99.9 1.4E-25 3E-30 207.9 23.7 209 5-229 26-291 (817)
8 TIGR00313 cobQ cobyric acid sy 99.9 3.9E-25 8.4E-30 195.6 19.7 207 9-218 1-227 (475)
9 PRK01077 cobyrinic acid a,c-di 99.9 4.9E-24 1.1E-28 188.1 20.9 181 5-221 2-187 (451)
10 TIGR00379 cobB cobyrinic acid 99.9 1E-23 2.2E-28 185.8 21.2 178 8-221 1-184 (449)
11 PRK11670 antiporter inner memb 99.9 5.7E-24 1.2E-28 182.6 18.0 195 4-219 105-320 (369)
12 COG1797 CobB Cobyrinic acid a, 99.9 9E-24 2E-28 179.1 18.4 180 7-221 1-185 (451)
13 COG2894 MinD Septum formation 99.9 1.4E-24 2.9E-29 168.4 11.2 188 5-219 1-217 (272)
14 TIGR01969 minD_arch cell divis 99.9 1.6E-23 3.4E-28 171.6 16.6 194 7-219 1-201 (251)
15 PRK05632 phosphate acetyltrans 99.9 4.8E-23 1E-27 189.8 19.9 191 5-232 1-216 (684)
16 cd02037 MRP-like MRP (Multiple 99.9 6.3E-23 1.4E-27 158.6 16.9 159 8-216 1-169 (169)
17 CHL00175 minD septum-site dete 99.9 1.3E-23 2.9E-28 175.1 13.5 201 4-219 13-223 (281)
18 cd03109 DTBS Dethiobiotin synt 99.9 2.4E-22 5.1E-27 149.5 17.0 132 9-213 3-134 (134)
19 PRK13896 cobyrinic acid a,c-di 99.9 8.5E-22 1.8E-26 171.3 21.0 175 6-221 1-181 (433)
20 PRK06278 cobyrinic acid a,c-di 99.9 1.2E-21 2.5E-26 172.1 20.5 174 5-213 237-418 (476)
21 cd02117 NifH_like This family 99.9 3.6E-22 7.8E-27 159.9 15.1 198 7-215 1-212 (212)
22 TIGR01968 minD_bact septum sit 99.9 2.1E-22 4.6E-27 165.8 12.3 193 7-219 2-208 (261)
23 cd02036 MinD Bacterial cell di 99.9 7.5E-22 1.6E-26 153.5 13.0 157 8-219 1-157 (179)
24 PRK13232 nifH nitrogenase redu 99.9 5.5E-22 1.2E-26 164.7 12.8 203 6-219 1-215 (273)
25 PRK13235 nifH nitrogenase redu 99.9 1.1E-20 2.5E-25 156.9 18.2 199 6-220 1-218 (274)
26 TIGR01007 eps_fam capsular exo 99.9 2.8E-20 6.1E-25 148.1 19.5 169 4-186 15-191 (204)
27 COG0489 Mrp ATPases involved i 99.9 1.6E-20 3.5E-25 154.6 18.6 198 5-218 56-261 (265)
28 PRK10818 cell division inhibit 99.9 2.7E-20 5.9E-25 154.3 19.1 195 5-219 1-218 (270)
29 PRK13869 plasmid-partitioning 99.9 7.7E-21 1.7E-25 165.4 16.5 204 5-219 120-358 (405)
30 COG0455 flhG Antiactivator of 99.9 2.8E-21 6E-26 158.1 12.4 197 5-216 1-206 (262)
31 PRK13233 nifH nitrogenase redu 99.9 5.3E-21 1.2E-25 158.9 13.7 204 5-220 1-219 (275)
32 TIGR03371 cellulose_yhjQ cellu 99.9 2.6E-20 5.5E-25 152.3 17.4 199 6-219 1-212 (246)
33 cd03110 Fer4_NifH_child This p 99.9 1.5E-20 3.3E-25 146.6 15.3 174 8-213 1-179 (179)
34 PHA02518 ParA-like protein; Pr 99.9 6.9E-21 1.5E-25 152.0 13.5 169 7-218 1-175 (211)
35 KOG3022|consensus 99.9 3.4E-21 7.3E-26 154.4 11.2 203 6-220 47-263 (300)
36 PRK13185 chlL protochlorophyll 99.9 2.3E-20 5E-25 154.7 16.4 194 5-220 1-213 (270)
37 cd02040 NifH NifH gene encodes 99.9 1.8E-20 4E-25 155.2 15.5 203 6-219 1-216 (270)
38 TIGR03029 EpsG chain length de 99.9 1.1E-19 2.4E-24 151.0 20.0 167 3-184 100-274 (274)
39 TIGR03453 partition_RepA plasm 99.8 9.8E-20 2.1E-24 158.2 18.0 204 4-219 102-341 (387)
40 cd02032 Bchl_like This family 99.8 5.4E-20 1.2E-24 152.3 14.9 195 8-221 2-212 (267)
41 PRK13849 putative crown gall t 99.8 5.8E-20 1.3E-24 148.5 13.9 172 6-217 1-181 (231)
42 PRK13234 nifH nitrogenase redu 99.8 2.9E-20 6.4E-25 155.8 12.5 198 5-219 3-219 (295)
43 PRK13236 nitrogenase reductase 99.8 4.6E-20 1E-24 154.7 13.5 201 1-219 1-221 (296)
44 TIGR02016 BchX chlorophyllide 99.8 1.3E-19 2.9E-24 151.6 16.1 198 7-220 1-221 (296)
45 TIGR01281 DPOR_bchL light-inde 99.8 9.1E-20 2E-24 151.0 14.8 190 8-220 2-211 (268)
46 CHL00072 chlL photochlorophyll 99.8 7.5E-20 1.6E-24 152.8 14.1 197 6-220 1-211 (290)
47 PF01656 CbiA: CobQ/CobB/MinD/ 99.8 5.5E-20 1.2E-24 144.9 12.3 183 9-217 1-192 (195)
48 TIGR01287 nifH nitrogenase iro 99.8 1.7E-19 3.8E-24 149.9 15.8 203 7-220 1-216 (275)
49 PF06564 YhjQ: YhjQ protein; 99.8 6.9E-19 1.5E-23 141.6 18.2 195 6-219 1-206 (243)
50 PRK10037 cell division protein 99.8 3.1E-19 6.7E-24 146.4 16.4 195 6-220 1-207 (250)
51 PRK13231 nitrogenase reductase 99.8 1.6E-19 3.5E-24 149.2 14.7 198 6-220 2-210 (264)
52 TIGR03018 pepcterm_TyrKin exop 99.8 7.6E-19 1.6E-23 140.1 17.4 163 4-183 33-207 (207)
53 PHA02519 plasmid partition pro 99.8 2E-19 4.3E-24 155.5 15.0 205 4-219 104-339 (387)
54 COG1192 Soj ATPases involved i 99.8 2.5E-19 5.5E-24 147.6 14.7 204 5-219 1-221 (259)
55 TIGR03815 CpaE_hom_Actino heli 99.8 1.9E-18 4.1E-23 146.7 19.7 190 4-219 91-294 (322)
56 PRK13705 plasmid-partitioning 99.8 6.2E-19 1.3E-23 152.6 16.1 204 4-219 104-339 (388)
57 cd02033 BchX Chlorophyllide re 99.8 6.4E-19 1.4E-23 148.5 14.0 203 4-220 29-246 (329)
58 PRK13230 nitrogenase reductase 99.8 6.7E-19 1.4E-23 146.7 13.3 202 6-219 1-216 (279)
59 PRK09841 cryptic autophosphory 99.8 6E-18 1.3E-22 157.4 19.8 169 3-186 528-704 (726)
60 COG1149 MinD superfamily P-loo 99.8 2.1E-18 4.6E-23 138.4 13.6 105 104-221 150-255 (284)
61 PRK11519 tyrosine kinase; Prov 99.8 4.7E-18 1E-22 157.9 16.9 167 3-186 523-699 (719)
62 TIGR01005 eps_transp_fam exopo 99.8 8.9E-18 1.9E-22 157.4 17.1 169 4-189 544-721 (754)
63 COG1492 CobQ Cobyric acid synt 99.8 4E-18 8.8E-23 147.3 9.9 212 6-220 1-232 (486)
64 cd02038 FleN-like FleN is a me 99.7 3.3E-16 7.1E-21 117.2 14.8 132 8-213 1-139 (139)
65 PF07015 VirC1: VirC1 protein; 99.7 2.3E-15 5E-20 119.6 18.5 144 6-186 1-151 (231)
66 cd00550 ArsA_ATPase Oxyanion-t 99.7 5.1E-16 1.1E-20 127.5 14.5 108 104-217 114-241 (254)
67 COG3640 CooC CO dehydrogenase 99.7 2.4E-15 5.2E-20 118.5 16.0 198 8-221 2-226 (255)
68 cd02035 ArsA ArsA ATPase funct 99.6 4.7E-15 1E-19 119.1 13.8 164 9-186 1-181 (217)
69 COG0857 Pta BioD-like N-termin 99.6 2.2E-14 4.8E-19 121.6 16.7 210 5-232 1-223 (354)
70 cd03111 CpaE_like This protein 99.6 1.1E-14 2.4E-19 103.8 12.5 102 8-184 1-106 (106)
71 PF00142 Fer4_NifH: 4Fe-4S iro 99.6 5.1E-15 1.1E-19 119.3 10.7 195 7-220 1-217 (273)
72 PF09140 MipZ: ATPase MipZ; I 99.6 1.1E-15 2.3E-20 122.1 6.6 109 7-127 1-109 (261)
73 COG1348 NifH Nitrogenase subun 99.6 2E-14 4.3E-19 112.9 13.3 199 6-221 1-219 (278)
74 cd02042 ParA ParA and ParB of 99.6 1.4E-13 2.9E-18 97.7 12.6 99 8-183 1-104 (104)
75 TIGR00064 ftsY signal recognit 99.5 2.4E-12 5.1E-17 106.6 17.9 173 5-216 71-254 (272)
76 PF02374 ArsA_ATPase: Anion-tr 99.5 6.9E-13 1.5E-17 111.5 11.1 67 148-216 209-287 (305)
77 PRK10867 signal recognition pa 99.4 1.1E-11 2.3E-16 108.4 18.4 165 6-209 100-271 (433)
78 TIGR00959 ffh signal recogniti 99.4 1.5E-11 3.2E-16 107.5 18.5 165 7-209 100-270 (428)
79 TIGR01425 SRP54_euk signal rec 99.4 1.5E-11 3.2E-16 107.0 16.6 169 6-214 100-274 (429)
80 PRK10416 signal recognition pa 99.4 5.2E-11 1.1E-15 100.6 19.2 167 5-209 113-290 (318)
81 PRK11889 flhF flagellar biosyn 99.4 4.5E-11 9.7E-16 102.3 17.0 174 6-221 241-425 (436)
82 cd03115 SRP The signal recogni 99.4 1.7E-10 3.7E-15 89.3 18.2 166 8-209 2-170 (173)
83 PRK12726 flagellar biosynthesi 99.3 1.3E-10 2.9E-15 99.1 17.8 168 6-215 206-384 (407)
84 COG0541 Ffh Signal recognition 99.3 1.7E-10 3.7E-15 98.8 17.5 178 6-222 100-288 (451)
85 PF13614 AAA_31: AAA domain; P 99.3 3.1E-12 6.8E-17 97.3 6.3 140 7-158 1-153 (157)
86 PRK00771 signal recognition pa 99.3 2.4E-10 5.3E-15 100.1 18.2 164 6-209 95-263 (437)
87 PF00448 SRP54: SRP54-type pro 99.3 1.5E-10 3.3E-15 91.3 15.0 175 7-218 2-179 (196)
88 PRK12723 flagellar biosynthesi 99.2 7.8E-10 1.7E-14 95.6 17.4 161 6-209 174-343 (388)
89 PRK05703 flhF flagellar biosyn 99.2 5.1E-10 1.1E-14 98.2 15.8 164 6-209 221-388 (424)
90 PRK12724 flagellar biosynthesi 99.2 7.2E-10 1.6E-14 95.9 16.2 171 7-221 224-407 (432)
91 PRK12727 flagellar biosynthesi 99.2 1E-09 2.2E-14 97.2 17.2 162 6-209 350-515 (559)
92 COG0003 ArsA Predicted ATPase 99.2 2.2E-09 4.7E-14 90.5 16.4 68 147-216 208-286 (322)
93 PRK13886 conjugal transfer pro 99.2 2E-09 4.3E-14 87.0 15.5 38 5-42 1-38 (241)
94 COG0552 FtsY Signal recognitio 99.1 9.5E-10 2.1E-14 91.5 13.0 164 6-209 139-315 (340)
95 PRK14974 cell division protein 99.1 4.3E-09 9.3E-14 89.4 16.9 163 6-209 140-310 (336)
96 COG1419 FlhF Flagellar GTP-bin 99.1 5.7E-09 1.2E-13 89.3 17.2 174 5-221 202-386 (407)
97 cd01983 Fer4_NifH The Fer4_Nif 99.1 9.5E-10 2.1E-14 76.2 9.8 33 9-42 2-34 (99)
98 cd03114 ArgK-like The function 99.1 3E-09 6.6E-14 80.3 11.6 33 9-42 2-34 (148)
99 PRK06731 flhF flagellar biosyn 99.1 1.8E-08 3.8E-13 83.2 16.9 172 6-219 75-257 (270)
100 COG4963 CpaE Flp pilus assembl 99.0 9E-09 1.9E-13 87.1 14.2 197 4-221 102-313 (366)
101 PRK14723 flhF flagellar biosyn 99.0 2.7E-08 5.9E-13 92.0 17.8 175 6-221 185-371 (767)
102 PRK13768 GTPase; Provisional 99.0 9E-09 2E-13 84.5 13.0 37 5-42 1-37 (253)
103 PRK14493 putative bifunctional 99.0 3.5E-09 7.5E-14 87.7 9.4 38 6-45 1-38 (274)
104 KOG0780|consensus 98.9 2E-08 4.3E-13 84.8 11.8 148 6-186 101-251 (483)
105 PRK14722 flhF flagellar biosyn 98.9 6.7E-08 1.5E-12 83.1 15.3 172 6-221 137-329 (374)
106 TIGR03499 FlhF flagellar biosy 98.8 2.5E-08 5.4E-13 83.2 10.4 36 6-42 194-231 (282)
107 PRK14494 putative molybdopteri 98.8 2.5E-08 5.5E-13 80.2 9.1 43 6-49 1-43 (229)
108 cd02034 CooC The accessory pro 98.8 1.4E-08 3E-13 73.4 6.9 33 9-42 2-34 (116)
109 COG1763 MobB Molybdopterin-gua 98.8 1.5E-08 3.3E-13 76.9 7.2 42 5-47 1-42 (161)
110 COG1703 ArgK Putative periplas 98.8 6.7E-07 1.5E-11 73.6 16.6 147 5-186 50-200 (323)
111 PRK06995 flhF flagellar biosyn 98.8 2.7E-07 5.8E-12 81.8 15.4 170 6-219 256-437 (484)
112 PRK14495 putative molybdopteri 98.7 5.1E-08 1.1E-12 84.6 8.4 43 6-49 1-43 (452)
113 TIGR00750 lao LAO/AO transport 98.7 5.8E-07 1.3E-11 75.7 14.3 37 5-42 33-69 (300)
114 PRK09435 membrane ATPase/prote 98.7 2.7E-06 5.9E-11 72.3 18.0 37 5-42 55-91 (332)
115 TIGR00176 mobB molybdopterin-g 98.6 3.5E-07 7.5E-12 69.6 9.0 40 8-48 1-40 (155)
116 PRK10751 molybdopterin-guanine 98.6 6.5E-07 1.4E-11 69.0 10.5 45 1-46 1-45 (173)
117 TIGR00345 arsA arsenite-activa 98.5 4.3E-06 9.2E-11 69.9 15.0 68 148-217 191-269 (284)
118 KOG0781|consensus 98.5 1.6E-06 3.4E-11 75.4 12.4 149 8-186 380-541 (587)
119 PF07755 DUF1611: Protein of u 98.5 3.5E-06 7.6E-11 70.2 13.4 171 5-213 111-294 (301)
120 cd03116 MobB Molybdenum is an 98.5 1.2E-06 2.6E-11 66.8 9.1 43 6-49 1-43 (159)
121 PF10609 ParA: ParA/MinD ATPas 98.5 4.8E-07 1E-11 60.3 5.9 64 118-186 2-65 (81)
122 PF03308 ArgK: ArgK protein; 98.4 2.1E-06 4.5E-11 69.7 9.4 125 5-158 28-155 (266)
123 PRK14491 putative bifunctional 98.4 2.5E-06 5.5E-11 78.1 10.5 110 5-131 9-119 (597)
124 COG3367 Uncharacterized conser 98.4 1.8E-05 3.8E-10 65.8 14.1 175 5-219 147-331 (339)
125 PF03205 MobB: Molybdopterin g 98.4 3.8E-06 8.1E-11 62.8 9.5 39 7-46 1-39 (140)
126 PRK14489 putative bifunctional 98.4 2.1E-06 4.6E-11 74.3 9.1 43 5-48 204-246 (366)
127 PF03029 ATP_bind_1: Conserved 98.3 1.5E-06 3.3E-11 70.7 5.8 154 11-186 1-167 (238)
128 PRK14721 flhF flagellar biosyn 98.2 8.4E-05 1.8E-09 65.1 15.8 161 6-209 191-357 (420)
129 KOG1532|consensus 98.2 6.8E-05 1.5E-09 61.2 13.4 164 6-186 19-192 (366)
130 cd03113 CTGs CTP synthetase (C 98.0 0.00015 3.2E-09 58.4 12.1 200 7-216 1-239 (255)
131 cd04170 EF-G_bact Elongation f 98.0 0.00015 3.2E-09 60.1 12.6 94 116-216 63-157 (268)
132 COG0378 HypB Ni2+-binding GTPa 98.0 0.00012 2.6E-09 57.0 10.6 98 6-133 13-113 (202)
133 COG1341 Predicted GTPase or GT 97.9 6.9E-05 1.5E-09 64.4 8.5 38 6-44 73-110 (398)
134 COG1066 Sms Predicted ATP-depe 97.9 0.00027 5.9E-09 60.9 12.0 144 9-186 95-260 (456)
135 PRK13505 formate--tetrahydrofo 97.8 3.3E-05 7.2E-10 68.8 5.8 37 5-41 54-93 (557)
136 PRK05973 replicative DNA helic 97.8 0.00065 1.4E-08 55.1 12.6 34 8-42 66-99 (237)
137 COG1618 Predicted nucleotide k 97.8 5.7E-05 1.2E-09 56.9 5.5 37 4-41 3-39 (179)
138 KOG1533|consensus 97.7 5.7E-05 1.2E-09 60.3 5.3 32 10-42 6-37 (290)
139 cd00477 FTHFS Formyltetrahydro 97.7 5.7E-05 1.2E-09 66.7 5.6 37 5-41 37-76 (524)
140 cd01886 EF-G Elongation factor 97.6 0.0013 2.7E-08 54.7 12.3 94 116-216 63-157 (270)
141 KOG2825|consensus 97.6 4.9E-05 1.1E-09 61.2 3.7 36 6-42 19-54 (323)
142 cd04168 TetM_like Tet(M)-like 97.6 0.0028 6.1E-08 51.5 13.6 87 116-209 63-149 (237)
143 PF01583 APS_kinase: Adenylyls 97.6 0.00017 3.7E-09 54.6 5.8 36 6-42 2-37 (156)
144 COG0529 CysC Adenylylsulfate k 97.6 0.00015 3.2E-09 55.6 5.3 38 4-42 21-58 (197)
145 PRK04296 thymidine kinase; Pro 97.5 0.00018 3.8E-09 56.6 5.5 37 6-43 2-38 (190)
146 PF02492 cobW: CobW/HypB/UreG, 97.5 0.00054 1.2E-08 53.2 8.1 34 7-42 1-34 (178)
147 cd04169 RF3 RF3 subfamily. Pe 97.5 0.0045 9.7E-08 51.3 14.0 94 116-216 70-164 (267)
148 TIGR02012 tigrfam_recA protein 97.5 0.00081 1.8E-08 57.0 9.5 36 6-42 55-90 (321)
149 cd00983 recA RecA is a bacter 97.5 0.00079 1.7E-08 57.1 9.3 36 6-42 55-90 (325)
150 PF13207 AAA_17: AAA domain; P 97.5 0.0002 4.4E-09 51.6 4.9 31 8-42 1-31 (121)
151 cd01121 Sms Sms (bacterial rad 97.4 0.0039 8.5E-08 54.1 13.0 146 7-186 83-250 (372)
152 PRK00889 adenylylsulfate kinas 97.4 0.0003 6.5E-09 54.3 5.6 37 5-42 3-39 (175)
153 PF01695 IstB_IS21: IstB-like 97.4 0.00034 7.4E-09 54.4 5.8 36 6-42 47-82 (178)
154 COG2403 Predicted GTPase [Gene 97.4 0.00021 4.5E-09 60.7 4.6 41 2-42 122-162 (449)
155 PRK11823 DNA repair protein Ra 97.4 0.004 8.7E-08 55.4 12.9 35 7-42 81-115 (446)
156 PF00009 GTP_EFTU: Elongation 97.4 0.00057 1.2E-08 53.4 6.8 66 115-186 68-133 (188)
157 TIGR00073 hypB hydrogenase acc 97.4 0.0022 4.8E-08 51.0 10.3 36 5-42 21-56 (207)
158 PRK14490 putative bifunctional 97.4 0.0018 3.9E-08 56.2 10.3 38 7-46 6-43 (369)
159 TIGR00416 sms DNA repair prote 97.3 0.005 1.1E-07 54.9 12.9 35 7-42 95-129 (454)
160 PRK07667 uridine kinase; Provi 97.3 0.00038 8.3E-09 54.8 5.3 35 7-42 18-52 (193)
161 PRK00741 prfC peptide chain re 97.3 0.0076 1.6E-07 54.7 14.2 87 116-209 78-164 (526)
162 PF13245 AAA_19: Part of AAA d 97.3 0.00051 1.1E-08 45.6 5.0 35 7-42 11-49 (76)
163 PRK05480 uridine/cytidine kina 97.3 0.00052 1.1E-08 54.6 5.6 39 1-42 1-39 (209)
164 PRK15453 phosphoribulokinase; 97.3 0.00051 1.1E-08 56.9 5.5 38 4-42 3-40 (290)
165 PHA00729 NTP-binding motif con 97.3 0.00048 1E-08 55.3 5.3 27 5-32 16-42 (226)
166 cd01394 radB RadB. The archaea 97.3 0.0005 1.1E-08 55.0 5.5 35 7-42 20-54 (218)
167 cd02019 NK Nucleoside/nucleoti 97.3 0.00059 1.3E-08 44.3 4.6 32 8-42 1-32 (69)
168 cd01393 recA_like RecA is a b 97.2 0.0032 7E-08 50.5 9.8 36 6-42 19-60 (226)
169 PRK09354 recA recombinase A; P 97.2 0.003 6.5E-08 54.1 9.9 36 6-42 60-95 (349)
170 PRK13506 formate--tetrahydrofo 97.2 0.00043 9.4E-09 61.8 4.9 35 5-39 53-90 (578)
171 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0028 6E-08 48.2 8.6 30 13-42 8-37 (159)
172 cd01124 KaiC KaiC is a circadi 97.2 0.00053 1.2E-08 53.2 4.9 33 9-42 2-34 (187)
173 PRK00007 elongation factor G; 97.2 0.0096 2.1E-07 56.0 13.6 92 116-214 74-166 (693)
174 TIGR02236 recomb_radA DNA repa 97.2 0.005 1.1E-07 52.1 10.7 36 6-42 95-136 (310)
175 PRK10463 hydrogenase nickel in 97.2 0.005 1.1E-07 51.4 10.4 98 4-132 102-200 (290)
176 cd02028 UMPK_like Uridine mono 97.2 0.00063 1.4E-08 52.9 4.8 34 8-42 1-34 (179)
177 cd01884 EF_Tu EF-Tu subfamily. 97.2 0.015 3.3E-07 45.8 12.7 66 116-186 64-129 (195)
178 cd00881 GTP_translation_factor 97.2 0.016 3.4E-07 44.6 12.7 65 116-186 61-125 (189)
179 PRK09361 radB DNA repair and r 97.2 0.00083 1.8E-08 54.0 5.5 36 6-42 23-58 (225)
180 TIGR02237 recomb_radB DNA repa 97.2 0.00085 1.8E-08 53.3 5.5 36 6-42 12-47 (209)
181 COG1484 DnaC DNA replication p 97.2 0.00074 1.6E-08 55.5 5.2 36 6-42 105-140 (254)
182 TIGR00484 EF-G translation elo 97.1 0.017 3.8E-07 54.2 14.6 92 116-214 74-166 (689)
183 COG4088 Predicted nucleotide k 97.1 0.0005 1.1E-08 54.1 3.6 35 6-41 1-35 (261)
184 PRK08233 hypothetical protein; 97.1 0.00056 1.2E-08 52.9 3.7 34 6-42 3-36 (182)
185 PRK06526 transposase; Provisio 97.1 0.00054 1.2E-08 56.3 3.7 35 7-42 99-133 (254)
186 PRK06696 uridine kinase; Valid 97.1 0.0011 2.5E-08 53.3 5.6 34 6-40 22-55 (223)
187 PRK07952 DNA replication prote 97.1 0.0011 2.3E-08 54.2 5.3 35 7-42 100-134 (244)
188 PRK12739 elongation factor G; 97.0 0.0079 1.7E-07 56.5 11.5 93 115-214 71-164 (691)
189 COG1936 Predicted nucleotide k 97.0 0.00073 1.6E-08 51.6 3.7 28 8-40 2-29 (180)
190 cd02029 PRK_like Phosphoribulo 97.0 0.0011 2.3E-08 54.6 4.9 34 8-42 1-34 (277)
191 PF01935 DUF87: Domain of unkn 97.0 0.001 2.2E-08 53.7 4.8 38 7-45 24-62 (229)
192 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0013 2.7E-08 54.3 5.3 35 7-42 37-71 (259)
193 PF00485 PRK: Phosphoribulokin 97.0 0.0011 2.3E-08 52.2 4.5 29 8-37 1-29 (194)
194 cd02027 APSK Adenosine 5'-phos 97.0 0.0013 2.9E-08 49.5 4.8 34 8-42 1-34 (149)
195 cd01120 RecA-like_NTPases RecA 97.0 0.0014 3E-08 49.3 4.9 33 9-42 2-34 (165)
196 PF00154 RecA: recA bacterial 97.0 0.0093 2E-07 50.6 10.2 36 6-42 53-88 (322)
197 PRK09183 transposase/IS protei 97.0 0.0015 3.4E-08 53.8 5.5 35 7-42 103-137 (259)
198 TIGR00682 lpxK tetraacyldisacc 97.0 0.0014 3E-08 55.5 5.2 38 5-42 27-65 (311)
199 PRK05541 adenylylsulfate kinas 97.0 0.002 4.3E-08 49.8 5.8 37 5-42 6-42 (176)
200 TIGR00503 prfC peptide chain r 96.9 0.022 4.7E-07 51.9 13.0 87 116-209 79-165 (527)
201 PRK03846 adenylylsulfate kinas 96.9 0.002 4.3E-08 50.9 5.6 37 5-42 23-59 (198)
202 PRK00652 lpxK tetraacyldisacch 96.9 0.0013 2.8E-08 55.9 4.8 38 5-42 48-86 (325)
203 PF06418 CTP_synth_N: CTP synt 96.9 0.017 3.7E-07 47.2 10.8 192 6-208 1-232 (276)
204 PRK12377 putative replication 96.9 0.0018 3.9E-08 53.0 5.2 35 7-42 102-136 (248)
205 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0016 3.4E-08 53.3 4.9 33 9-42 2-34 (249)
206 TIGR02238 recomb_DMC1 meiotic 96.9 0.01 2.2E-07 50.3 9.9 35 7-42 97-137 (313)
207 PRK08118 topology modulation p 96.9 0.0011 2.4E-08 50.9 3.6 33 6-42 1-33 (167)
208 PLN03187 meiotic recombination 96.9 0.015 3.2E-07 50.0 10.7 35 7-42 127-167 (344)
209 smart00382 AAA ATPases associa 96.9 0.0011 2.5E-08 47.9 3.4 35 7-42 3-37 (148)
210 TIGR00041 DTMP_kinase thymidyl 96.9 0.0022 4.9E-08 50.2 5.3 36 6-42 3-38 (195)
211 PRK08939 primosomal protein Dn 96.8 0.0021 4.5E-08 54.3 5.4 36 6-42 156-191 (306)
212 cd01672 TMPK Thymidine monopho 96.8 0.0024 5.1E-08 49.9 5.4 34 8-42 2-35 (200)
213 PRK08181 transposase; Validate 96.8 0.0023 4.9E-08 53.1 5.2 36 6-42 106-141 (269)
214 TIGR00235 udk uridine kinase. 96.8 0.0019 4.1E-08 51.4 4.6 32 1-33 1-32 (207)
215 cd00544 CobU Adenosylcobinamid 96.8 0.014 3E-07 45.0 9.2 30 9-42 2-31 (169)
216 PRK04040 adenylate kinase; Pro 96.8 0.0021 4.6E-08 50.4 4.7 33 5-39 1-33 (188)
217 cd00984 DnaB_C DnaB helicase C 96.8 0.0026 5.7E-08 51.6 5.4 35 7-42 14-49 (242)
218 PF08433 KTI12: Chromatin asso 96.8 0.0022 4.9E-08 53.1 5.0 36 6-42 1-36 (270)
219 PRK06835 DNA replication prote 96.8 0.0026 5.6E-08 54.3 5.4 36 6-42 183-218 (329)
220 PF02606 LpxK: Tetraacyldisacc 96.7 0.0021 4.6E-08 54.7 4.6 38 5-42 34-72 (326)
221 KOG0635|consensus 96.7 0.0034 7.3E-08 47.0 4.9 38 4-42 29-66 (207)
222 PF12846 AAA_10: AAA-like doma 96.7 0.0027 5.8E-08 52.9 4.9 36 8-44 3-38 (304)
223 PLN03127 Elongation factor Tu; 96.7 0.049 1.1E-06 48.6 13.1 66 116-186 123-188 (447)
224 PRK01906 tetraacyldisaccharide 96.7 0.0028 6E-08 54.2 4.9 38 5-42 55-93 (338)
225 PF03266 NTPase_1: NTPase; In 96.7 0.0032 6.9E-08 48.5 4.8 32 9-41 2-33 (168)
226 PRK08533 flagellar accessory p 96.7 0.0039 8.5E-08 50.5 5.6 36 6-42 24-59 (230)
227 cd03112 CobW_like The function 96.7 0.027 5.9E-07 42.8 9.9 32 8-42 2-33 (158)
228 TIGR00455 apsK adenylylsulfate 96.7 0.0042 9.2E-08 48.3 5.6 37 5-42 17-53 (184)
229 PRK06762 hypothetical protein; 96.7 0.0034 7.3E-08 47.9 4.9 33 6-42 2-34 (166)
230 PRK10218 GTP-binding protein; 96.7 0.044 9.5E-07 50.7 12.9 66 115-186 66-131 (607)
231 TIGR01394 TypA_BipA GTP-bindin 96.7 0.036 7.8E-07 51.1 12.3 65 116-186 63-127 (594)
232 COG0468 RecA RecA/RadA recombi 96.7 0.025 5.5E-07 47.0 10.3 36 6-42 60-95 (279)
233 PRK08727 hypothetical protein; 96.6 0.0035 7.6E-08 50.9 5.1 35 7-42 42-76 (233)
234 PRK06893 DNA replication initi 96.6 0.0035 7.7E-08 50.7 5.1 35 7-42 40-74 (229)
235 COG2109 BtuR ATP:corrinoid ade 96.6 0.016 3.4E-07 45.0 8.1 38 5-42 26-63 (198)
236 PHA02542 41 41 helicase; Provi 96.6 0.0031 6.8E-08 56.4 5.0 35 8-42 191-225 (473)
237 PRK13351 elongation factor G; 96.6 0.05 1.1E-06 51.2 13.3 94 116-216 72-166 (687)
238 cd01122 GP4d_helicase GP4d_hel 96.6 0.0038 8.3E-08 51.6 5.3 34 8-42 32-66 (271)
239 PRK14527 adenylate kinase; Pro 96.6 0.0027 5.8E-08 49.8 4.1 30 1-31 1-30 (191)
240 PRK05433 GTP-binding protein L 96.6 0.057 1.2E-06 50.0 13.0 27 3-30 4-30 (600)
241 PTZ00035 Rad51 protein; Provis 96.6 0.024 5.3E-07 48.6 10.0 36 6-42 118-159 (337)
242 cd00009 AAA The AAA+ (ATPases 96.6 0.0043 9.4E-08 45.3 4.8 36 6-42 19-54 (151)
243 PRK06921 hypothetical protein; 96.6 0.0048 1E-07 51.1 5.5 36 6-42 117-153 (266)
244 PRK06851 hypothetical protein; 96.6 0.0052 1.1E-07 53.0 5.8 35 7-42 215-249 (367)
245 cd02025 PanK Pantothenate kina 96.6 0.0037 8E-08 50.3 4.6 33 8-41 1-35 (220)
246 PRK06067 flagellar accessory p 96.6 0.0048 1E-07 49.9 5.4 35 7-42 26-60 (234)
247 PRK04301 radA DNA repair and r 96.5 0.023 5E-07 48.2 9.7 35 7-42 103-143 (317)
248 PLN02924 thymidylate kinase 96.5 0.0051 1.1E-07 49.5 5.3 37 5-42 15-51 (220)
249 KOG3347|consensus 96.5 0.0022 4.7E-08 47.9 2.8 24 7-31 8-31 (176)
250 PRK07933 thymidylate kinase; V 96.5 0.0054 1.2E-07 49.1 5.4 34 8-42 2-35 (213)
251 PRK00049 elongation factor Tu; 96.5 0.052 1.1E-06 47.6 12.0 66 116-186 74-139 (396)
252 PRK06217 hypothetical protein; 96.5 0.0026 5.6E-08 49.6 3.4 24 7-31 2-25 (183)
253 PRK05439 pantothenate kinase; 96.5 0.0054 1.2E-07 51.8 5.5 36 6-42 86-123 (311)
254 PRK00089 era GTPase Era; Revie 96.5 0.36 7.9E-06 40.3 16.5 29 6-41 5-33 (292)
255 COG0467 RAD55 RecA-superfamily 96.5 0.0048 1E-07 50.8 5.1 36 6-42 23-58 (260)
256 PF13481 AAA_25: AAA domain; P 96.5 0.0052 1.1E-07 47.9 5.0 34 8-42 34-77 (193)
257 PF13238 AAA_18: AAA domain; P 96.5 0.0035 7.5E-08 45.3 3.7 22 9-31 1-22 (129)
258 PF06745 KaiC: KaiC; InterPro 96.5 0.0053 1.1E-07 49.4 5.0 35 7-42 20-55 (226)
259 COG0572 Udk Uridine kinase [Nu 96.4 0.0043 9.3E-08 49.5 4.3 38 1-41 1-40 (218)
260 CHL00071 tufA elongation facto 96.4 0.069 1.5E-06 47.1 12.2 67 115-186 73-139 (409)
261 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.0073 1.6E-07 48.5 5.6 36 6-42 16-51 (224)
262 smart00053 DYNc Dynamin, GTPas 96.4 0.097 2.1E-06 42.7 12.1 70 116-186 124-203 (240)
263 PRK08084 DNA replication initi 96.4 0.0069 1.5E-07 49.2 5.3 35 7-42 46-80 (235)
264 PRK06761 hypothetical protein; 96.4 0.0042 9E-08 51.8 4.1 35 6-41 3-37 (282)
265 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.0074 1.6E-07 48.6 5.4 35 7-42 21-55 (229)
266 TIGR00708 cobA cob(I)alamin ad 96.4 0.0082 1.8E-07 46.3 5.3 27 16-42 14-40 (173)
267 PF03796 DnaB_C: DnaB-like hel 96.4 0.0063 1.4E-07 50.1 5.0 34 9-42 21-55 (259)
268 PRK05380 pyrG CTP synthetase; 96.4 0.062 1.3E-06 48.5 11.5 38 5-42 1-39 (533)
269 PRK05642 DNA replication initi 96.3 0.0073 1.6E-07 49.0 5.2 35 7-42 46-80 (234)
270 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0079 1.7E-07 48.9 5.4 36 6-42 21-56 (237)
271 PTZ00301 uridine kinase; Provi 96.3 0.0052 1.1E-07 49.1 4.2 28 6-34 3-30 (210)
272 PRK00698 tmk thymidylate kinas 96.3 0.0086 1.9E-07 47.1 5.4 36 6-42 3-38 (205)
273 COG0237 CoaE Dephospho-CoA kin 96.3 0.006 1.3E-07 48.3 4.4 33 5-42 1-33 (201)
274 COG4240 Predicted kinase [Gene 96.3 0.0067 1.4E-07 48.6 4.5 33 8-41 52-85 (300)
275 cd04165 GTPBP1_like GTPBP1-lik 96.3 0.085 1.8E-06 42.5 11.1 87 115-205 82-168 (224)
276 PF13479 AAA_24: AAA domain 96.3 0.025 5.4E-07 45.2 8.0 27 7-42 4-30 (213)
277 PF05729 NACHT: NACHT domain 96.3 0.0056 1.2E-07 46.1 4.0 29 7-36 1-29 (166)
278 PRK13947 shikimate kinase; Pro 96.3 0.0048 1E-07 47.2 3.6 29 6-38 1-29 (171)
279 PF13604 AAA_30: AAA domain; P 96.3 0.0098 2.1E-07 46.9 5.4 36 7-43 19-54 (196)
280 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.01 2.2E-07 47.5 5.6 36 6-42 38-73 (226)
281 PRK08116 hypothetical protein; 96.2 0.0091 2E-07 49.5 5.4 34 8-42 116-149 (268)
282 cd02023 UMPK Uridine monophosp 96.2 0.0068 1.5E-07 47.7 4.4 32 8-42 1-32 (198)
283 PRK11537 putative GTP-binding 96.2 0.025 5.3E-07 48.1 8.0 35 5-42 3-37 (318)
284 KOG3220|consensus 96.2 0.0076 1.7E-07 47.2 4.4 29 6-39 1-29 (225)
285 TIGR00101 ureG urease accessor 96.2 0.054 1.2E-06 42.8 9.4 33 8-42 3-35 (199)
286 PRK03731 aroL shikimate kinase 96.2 0.0057 1.2E-07 46.9 3.7 25 6-31 2-26 (171)
287 PRK09519 recA DNA recombinatio 96.2 0.045 9.7E-07 51.8 9.9 36 6-42 60-95 (790)
288 PLN03186 DNA repair protein RA 96.2 0.066 1.4E-06 46.0 10.3 35 7-42 124-164 (342)
289 PRK08903 DnaA regulatory inact 96.1 0.011 2.3E-07 47.6 5.2 35 7-42 43-77 (227)
290 cd04167 Snu114p Snu114p subfam 96.1 0.1 2.3E-06 41.5 10.9 26 7-33 1-26 (213)
291 PRK06547 hypothetical protein; 96.1 0.0083 1.8E-07 46.3 4.3 34 5-42 14-47 (172)
292 TIGR02475 CobW cobalamin biosy 96.1 0.042 9.1E-07 47.2 9.0 36 4-42 2-37 (341)
293 TIGR02655 circ_KaiC circadian 96.1 0.0093 2E-07 53.7 5.2 35 7-42 264-298 (484)
294 KOG1534|consensus 96.1 0.018 3.8E-07 45.7 6.0 34 8-42 5-38 (273)
295 COG1435 Tdk Thymidine kinase [ 96.1 0.038 8.1E-07 43.3 7.8 112 4-151 2-115 (201)
296 PRK05800 cobU adenosylcobinami 96.1 0.032 7E-07 43.0 7.5 31 8-42 3-33 (170)
297 PRK12736 elongation factor Tu; 96.1 0.098 2.1E-06 45.9 11.3 66 116-186 74-139 (394)
298 COG1159 Era GTPase [General fu 96.1 0.27 5.9E-06 41.0 13.0 28 8-42 8-35 (298)
299 KOG2749|consensus 96.0 0.041 8.8E-07 46.9 8.2 37 5-42 102-138 (415)
300 PF13086 AAA_11: AAA domain; P 96.0 0.0076 1.7E-07 48.0 3.8 33 9-42 20-60 (236)
301 PRK13973 thymidylate kinase; P 96.0 0.016 3.4E-07 46.3 5.6 36 6-42 3-38 (213)
302 COG1855 ATPase (PilT family) [ 96.0 0.0086 1.9E-07 52.5 4.2 32 6-38 263-294 (604)
303 TIGR00485 EF-Tu translation el 96.0 0.25 5.4E-06 43.3 13.4 66 116-186 74-139 (394)
304 PF01268 FTHFS: Formate--tetra 96.0 0.0059 1.3E-07 54.8 3.2 37 5-41 53-92 (557)
305 TIGR01360 aden_kin_iso1 adenyl 96.0 0.0084 1.8E-07 46.5 3.8 26 5-31 2-27 (188)
306 PF13521 AAA_28: AAA domain; P 96.0 0.0085 1.8E-07 45.6 3.7 25 9-38 2-26 (163)
307 PF13401 AAA_22: AAA domain; P 96.0 0.014 3.1E-07 42.3 4.8 37 5-42 3-44 (131)
308 PRK00131 aroK shikimate kinase 96.0 0.0088 1.9E-07 45.7 3.7 25 6-31 4-28 (175)
309 PRK06851 hypothetical protein; 95.9 0.02 4.4E-07 49.5 6.2 35 6-41 30-64 (367)
310 TIGR03575 selen_PSTK_euk L-ser 95.9 0.012 2.5E-07 50.4 4.7 33 9-42 2-35 (340)
311 PRK05595 replicative DNA helic 95.9 0.012 2.5E-07 52.5 4.9 34 8-42 203-237 (444)
312 PTZ00141 elongation factor 1- 95.9 0.063 1.4E-06 47.9 9.4 67 115-186 83-156 (446)
313 PRK07261 topology modulation p 95.9 0.0086 1.9E-07 46.2 3.5 23 8-31 2-24 (171)
314 PF05970 PIF1: PIF1-like helic 95.9 0.019 4.2E-07 49.7 6.0 39 6-45 22-60 (364)
315 COG0504 PyrG CTP synthase (UTP 95.9 0.14 3E-06 45.4 11.0 37 6-42 1-38 (533)
316 cd02020 CMPK Cytidine monophos 95.9 0.0085 1.9E-07 44.4 3.3 23 8-31 1-23 (147)
317 PRK04328 hypothetical protein; 95.9 0.017 3.6E-07 47.4 5.1 36 6-42 23-58 (249)
318 PLN03126 Elongation factor Tu; 95.8 0.19 4E-06 45.3 12.1 66 116-186 143-208 (478)
319 PRK08760 replicative DNA helic 95.8 0.015 3.3E-07 52.2 5.2 34 8-42 231-265 (476)
320 TIGR03600 phage_DnaB phage rep 95.8 0.014 3E-07 51.6 4.9 34 8-42 196-230 (421)
321 PLN03046 D-glycerate 3-kinase; 95.8 0.015 3.3E-07 50.9 5.0 35 6-41 212-246 (460)
322 PRK13949 shikimate kinase; Pro 95.8 0.0097 2.1E-07 45.8 3.4 25 6-31 1-25 (169)
323 COG1102 Cmk Cytidylate kinase 95.8 0.0091 2E-07 45.3 3.1 28 8-39 2-29 (179)
324 COG1663 LpxK Tetraacyldisaccha 95.8 0.011 2.3E-07 50.1 3.7 38 5-42 46-84 (336)
325 PRK12735 elongation factor Tu; 95.8 0.14 3E-06 44.9 11.0 66 116-186 74-139 (396)
326 PRK01184 hypothetical protein; 95.8 0.014 3E-07 45.4 4.1 30 6-40 1-30 (184)
327 PLN02796 D-glycerate 3-kinase 95.8 0.015 3.3E-07 49.7 4.7 34 7-41 101-134 (347)
328 PF00004 AAA: ATPase family as 95.8 0.018 3.8E-07 41.6 4.5 30 9-42 1-30 (132)
329 TIGR02239 recomb_RAD51 DNA rep 95.8 0.097 2.1E-06 44.5 9.5 36 6-42 96-137 (316)
330 PRK08506 replicative DNA helic 95.7 0.016 3.4E-07 52.0 5.0 34 9-42 194-227 (472)
331 PLN02327 CTP synthase 95.7 0.22 4.7E-06 45.2 11.8 37 6-42 1-38 (557)
332 PRK03839 putative kinase; Prov 95.7 0.012 2.6E-07 45.5 3.6 23 8-31 2-24 (180)
333 PRK12338 hypothetical protein; 95.7 0.011 2.4E-07 50.0 3.5 28 7-38 5-32 (319)
334 TIGR00665 DnaB replicative DNA 95.7 0.022 4.9E-07 50.5 5.6 34 8-42 197-231 (434)
335 PF13173 AAA_14: AAA domain 95.7 0.019 4.1E-07 41.9 4.3 35 6-42 2-36 (128)
336 PRK14528 adenylate kinase; Pro 95.7 0.013 2.9E-07 45.7 3.7 31 6-40 1-31 (186)
337 PRK14530 adenylate kinase; Pro 95.7 0.013 2.9E-07 46.7 3.8 23 8-31 5-27 (215)
338 PF01745 IPT: Isopentenyl tran 95.6 0.024 5.1E-07 45.1 5.0 39 6-48 1-39 (233)
339 PRK06749 replicative DNA helic 95.6 0.017 3.6E-07 51.2 4.7 34 9-42 188-221 (428)
340 PRK00081 coaE dephospho-CoA ki 95.6 0.021 4.6E-07 44.9 4.8 33 5-42 1-33 (194)
341 PF08423 Rad51: Rad51; InterP 95.6 0.049 1.1E-06 44.8 7.1 35 7-42 39-79 (256)
342 TIGR00337 PyrG CTP synthase. C 95.6 0.22 4.8E-06 45.0 11.6 37 6-42 1-38 (525)
343 COG4108 PrfC Peptide chain rel 95.6 0.38 8.2E-06 42.4 12.4 84 116-206 80-163 (528)
344 COG0125 Tmk Thymidylate kinase 95.6 0.032 7E-07 44.4 5.6 37 5-42 2-38 (208)
345 COG1160 Predicted GTPases [Gen 95.6 0.42 9.1E-06 42.1 12.8 29 7-42 4-32 (444)
346 PRK14531 adenylate kinase; Pro 95.6 0.016 3.5E-07 45.1 3.8 24 7-31 3-26 (183)
347 PRK08006 replicative DNA helic 95.5 0.022 4.7E-07 51.1 5.0 34 9-42 226-260 (471)
348 PRK00300 gmk guanylate kinase; 95.5 0.014 3.1E-07 46.0 3.5 30 1-32 1-30 (205)
349 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.012 2.7E-07 45.4 3.1 23 8-31 1-23 (183)
350 PRK13507 formate--tetrahydrofo 95.5 0.0092 2E-07 53.5 2.6 36 6-41 63-101 (587)
351 cd02024 NRK1 Nicotinamide ribo 95.5 0.012 2.5E-07 46.2 2.9 23 8-31 1-23 (187)
352 PF07724 AAA_2: AAA domain (Cd 95.5 0.029 6.2E-07 43.3 5.0 37 5-42 2-39 (171)
353 PRK09270 nucleoside triphospha 95.5 0.028 6E-07 45.4 5.1 35 5-40 32-66 (229)
354 PRK12339 2-phosphoglycerate ki 95.5 0.016 3.5E-07 45.7 3.7 29 6-38 3-31 (197)
355 PRK02496 adk adenylate kinase; 95.5 0.017 3.8E-07 44.8 3.8 24 7-31 2-25 (184)
356 PRK10846 bifunctional folylpol 95.5 0.022 4.8E-07 50.2 4.9 36 4-42 47-82 (416)
357 TIGR00436 era GTP-binding prot 95.5 0.9 1.9E-05 37.6 14.2 20 8-28 2-21 (270)
358 PRK05748 replicative DNA helic 95.5 0.026 5.6E-07 50.4 5.2 34 8-42 205-239 (448)
359 cd00046 DEXDc DEAD-like helica 95.4 0.028 6.1E-07 40.4 4.6 34 8-42 2-37 (144)
360 PLN02759 Formate--tetrahydrofo 95.4 0.017 3.7E-07 52.3 3.9 36 6-41 69-108 (637)
361 PRK09165 replicative DNA helic 95.4 0.029 6.3E-07 50.7 5.4 34 8-42 219-267 (497)
362 PRK13975 thymidylate kinase; P 95.4 0.02 4.3E-07 44.8 3.9 26 6-32 2-27 (196)
363 PRK08840 replicative DNA helic 95.4 0.026 5.6E-07 50.5 5.0 34 9-42 219-253 (464)
364 PRK05986 cob(I)alamin adenolsy 95.4 0.037 8.1E-07 43.3 5.3 33 10-42 25-57 (191)
365 PRK07429 phosphoribulokinase; 95.4 0.027 5.8E-07 48.1 4.8 36 6-42 8-43 (327)
366 cd01123 Rad51_DMC1_radA Rad51_ 95.4 0.021 4.6E-07 46.0 4.0 36 6-42 19-60 (235)
367 PLN02200 adenylate kinase fami 95.4 0.023 5E-07 46.1 4.2 24 7-31 44-67 (234)
368 PF07728 AAA_5: AAA domain (dy 95.3 0.036 7.7E-07 40.8 4.9 30 9-42 2-31 (139)
369 PRK13695 putative NTPase; Prov 95.3 0.039 8.4E-07 42.5 5.3 31 8-39 2-32 (174)
370 PLN00043 elongation factor 1-a 95.3 0.17 3.7E-06 45.1 10.0 67 115-186 83-156 (447)
371 PF09848 DUF2075: Uncharacteri 95.3 0.025 5.4E-07 48.8 4.6 34 8-42 3-38 (352)
372 PRK12422 chromosomal replicati 95.3 0.032 7E-07 49.7 5.4 36 6-42 141-176 (445)
373 TIGR00554 panK_bact pantothena 95.3 0.037 8.1E-07 46.4 5.4 35 6-41 62-98 (290)
374 PRK06904 replicative DNA helic 95.3 0.027 5.8E-07 50.6 4.8 34 9-42 223-257 (472)
375 PF13191 AAA_16: AAA ATPase do 95.3 0.032 6.9E-07 42.9 4.8 37 5-42 23-59 (185)
376 cd01125 repA Hexameric Replica 95.3 0.032 6.9E-07 45.3 4.9 33 9-42 4-48 (239)
377 TIGR02655 circ_KaiC circadian 95.3 0.029 6.4E-07 50.5 5.1 36 6-42 21-57 (484)
378 PRK05057 aroK shikimate kinase 95.3 0.024 5.2E-07 43.7 3.9 28 1-31 1-28 (172)
379 COG0480 FusA Translation elong 95.2 0.42 9E-06 45.0 12.5 86 116-208 75-160 (697)
380 PF02223 Thymidylate_kin: Thym 95.2 0.021 4.6E-07 44.3 3.5 27 16-42 5-31 (186)
381 PF13671 AAA_33: AAA domain; P 95.2 0.02 4.3E-07 42.2 3.2 24 8-32 1-24 (143)
382 cd00227 CPT Chloramphenicol (C 95.2 0.025 5.3E-07 43.6 3.8 25 6-31 2-26 (175)
383 TIGR00376 DNA helicase, putati 95.2 0.032 6.9E-07 52.0 5.1 35 8-43 175-209 (637)
384 PRK09302 circadian clock prote 95.2 0.033 7.2E-07 50.5 5.1 36 6-42 31-67 (509)
385 PF00910 RNA_helicase: RNA hel 95.2 0.021 4.6E-07 40.3 3.1 25 9-34 1-25 (107)
386 PRK06321 replicative DNA helic 95.2 0.034 7.3E-07 49.9 5.0 34 9-42 228-262 (472)
387 PHA02530 pseT polynucleotide k 95.2 0.02 4.4E-07 48.0 3.4 25 6-31 2-26 (300)
388 PRK04220 2-phosphoglycerate ki 95.1 0.038 8.3E-07 46.4 4.9 24 7-31 93-116 (301)
389 TIGR03754 conj_TOL_TraD conjug 95.1 0.032 7E-07 51.6 4.8 37 8-45 182-218 (643)
390 cd02026 PRK Phosphoribulokinas 95.1 0.02 4.4E-07 47.6 3.2 34 8-42 1-34 (273)
391 cd02022 DPCK Dephospho-coenzym 95.1 0.028 6.2E-07 43.5 3.9 30 8-42 1-30 (179)
392 PF10662 PduV-EutP: Ethanolami 95.1 0.022 4.7E-07 42.5 3.0 76 104-186 51-130 (143)
393 TIGR01618 phage_P_loop phage n 95.1 0.15 3.3E-06 40.9 8.1 28 7-42 13-40 (220)
394 cd01131 PilT Pilus retraction 95.1 0.043 9.4E-07 43.3 4.9 34 8-42 3-37 (198)
395 PRK13764 ATPase; Provisional 95.1 0.037 8.1E-07 50.9 5.1 35 6-41 257-291 (602)
396 PRK05537 bifunctional sulfate 95.1 0.039 8.5E-07 50.6 5.2 36 6-42 392-428 (568)
397 COG0370 FeoB Fe2+ transport sy 95.1 0.4 8.6E-06 44.3 11.5 27 5-32 2-28 (653)
398 COG1072 CoaA Panthothenate kin 95.0 0.038 8.2E-07 45.5 4.5 30 7-37 83-112 (283)
399 PRK00625 shikimate kinase; Pro 95.0 0.027 6E-07 43.5 3.6 23 8-31 2-24 (173)
400 PLN02165 adenylate isopentenyl 95.0 0.026 5.7E-07 48.0 3.6 28 3-31 40-67 (334)
401 KOG2004|consensus 94.9 0.018 4E-07 53.2 2.7 35 5-40 437-471 (906)
402 PTZ00386 formyl tetrahydrofola 94.9 0.017 3.7E-07 52.2 2.4 36 6-41 68-107 (625)
403 TIGR02880 cbbX_cfxQ probable R 94.9 0.039 8.4E-07 46.2 4.4 29 7-36 59-87 (284)
404 COG3911 Predicted ATPase [Gene 94.9 0.034 7.4E-07 41.6 3.6 27 9-39 11-37 (183)
405 PF00308 Bac_DnaA: Bacterial d 94.9 0.072 1.6E-06 42.8 5.8 36 6-42 34-71 (219)
406 cd01129 PulE-GspE PulE/GspE Th 94.9 0.031 6.7E-07 46.3 3.7 35 7-42 81-115 (264)
407 TIGR01393 lepA GTP-binding pro 94.9 0.71 1.5E-05 42.8 12.8 25 5-30 2-26 (595)
408 cd01883 EF1_alpha Eukaryotic e 94.8 0.17 3.7E-06 40.4 7.9 22 9-31 2-23 (219)
409 PRK05636 replicative DNA helic 94.8 0.046 1E-06 49.4 5.0 34 8-42 267-301 (505)
410 PF06414 Zeta_toxin: Zeta toxi 94.8 0.034 7.5E-07 43.8 3.8 34 7-43 16-49 (199)
411 PRK00023 cmk cytidylate kinase 94.8 0.038 8.3E-07 44.6 4.0 24 7-31 5-28 (225)
412 PRK07004 replicative DNA helic 94.8 0.04 8.7E-07 49.3 4.5 34 9-42 215-249 (460)
413 PRK13946 shikimate kinase; Pro 94.8 0.032 7E-07 43.4 3.5 29 6-38 10-38 (184)
414 cd02021 GntK Gluconate kinase 94.8 0.027 5.8E-07 42.1 2.9 22 9-31 2-23 (150)
415 PF00931 NB-ARC: NB-ARC domain 94.8 0.039 8.5E-07 45.7 4.2 38 4-42 17-56 (287)
416 PRK04182 cytidylate kinase; Pr 94.8 0.03 6.5E-07 43.0 3.2 23 8-31 2-24 (180)
417 TIGR00017 cmk cytidylate kinas 94.8 0.037 8.1E-07 44.4 3.8 25 6-31 2-26 (217)
418 PRK14730 coaE dephospho-CoA ki 94.8 0.046 9.9E-07 43.1 4.3 32 7-42 2-33 (195)
419 TIGR02322 phosphon_PhnN phosph 94.8 0.032 7E-07 43.0 3.4 28 7-35 2-29 (179)
420 TIGR02881 spore_V_K stage V sp 94.8 0.047 1E-06 45.0 4.5 29 6-35 42-70 (261)
421 PF00265 TK: Thymidine kinase; 94.7 0.098 2.1E-06 40.5 5.9 37 7-44 2-38 (176)
422 KOG0991|consensus 94.7 0.032 6.9E-07 45.1 3.2 36 5-41 47-82 (333)
423 COG2019 AdkA Archaeal adenylat 94.7 0.042 9E-07 42.0 3.6 25 6-31 4-28 (189)
424 COG0703 AroK Shikimate kinase 94.7 0.037 7.9E-07 42.6 3.3 26 6-32 2-27 (172)
425 PRK14734 coaE dephospho-CoA ki 94.7 0.051 1.1E-06 43.0 4.3 30 6-40 1-30 (200)
426 cd00464 SK Shikimate kinase (S 94.6 0.036 7.9E-07 41.4 3.3 23 8-31 1-23 (154)
427 PRK13948 shikimate kinase; Pro 94.6 0.043 9.3E-07 42.8 3.8 26 5-31 9-34 (182)
428 TIGR02782 TrbB_P P-type conjug 94.6 0.056 1.2E-06 45.6 4.7 35 7-42 133-169 (299)
429 COG0563 Adk Adenylate kinase a 94.6 0.039 8.4E-07 42.9 3.5 22 8-30 2-23 (178)
430 PRK07560 elongation factor EF- 94.6 0.25 5.4E-06 47.0 9.4 65 116-186 86-150 (731)
431 PTZ00088 adenylate kinase 1; P 94.6 0.05 1.1E-06 44.0 4.2 29 8-40 8-36 (229)
432 KOG0744|consensus 94.6 0.034 7.4E-07 46.9 3.3 27 7-34 178-204 (423)
433 TIGR00362 DnaA chromosomal rep 94.6 0.073 1.6E-06 46.8 5.5 36 6-42 136-173 (405)
434 cd01428 ADK Adenylate kinase ( 94.5 0.034 7.4E-07 43.3 3.1 27 9-39 2-28 (194)
435 PF10412 TrwB_AAD_bind: Type I 94.5 0.075 1.6E-06 46.5 5.5 39 6-45 15-53 (386)
436 PRK05506 bifunctional sulfate 94.5 0.061 1.3E-06 50.1 5.1 37 5-42 459-495 (632)
437 PRK00091 miaA tRNA delta(2)-is 94.5 0.042 9E-07 46.5 3.6 33 6-42 4-36 (307)
438 PRK00149 dnaA chromosomal repl 94.4 0.081 1.8E-06 47.2 5.6 36 6-42 148-185 (450)
439 TIGR01313 therm_gnt_kin carboh 94.4 0.03 6.6E-07 42.4 2.5 22 9-31 1-22 (163)
440 CHL00181 cbbX CbbX; Provisiona 94.4 0.055 1.2E-06 45.3 4.2 28 8-36 61-88 (287)
441 PRK09302 circadian clock prote 94.4 0.069 1.5E-06 48.4 5.1 35 7-42 274-308 (509)
442 TIGR02173 cyt_kin_arch cytidyl 94.4 0.042 9.2E-07 41.8 3.3 27 8-38 2-28 (171)
443 COG2874 FlaH Predicted ATPases 94.4 0.21 4.4E-06 39.9 7.0 35 8-42 29-63 (235)
444 PLN02348 phosphoribulokinase 94.3 0.088 1.9E-06 45.8 5.3 28 6-34 49-76 (395)
445 TIGR03172 probable selenium-de 94.3 0.07 1.5E-06 43.2 4.4 30 9-41 2-31 (232)
446 TIGR00150 HI0065_YjeE ATPase, 94.3 0.057 1.2E-06 39.8 3.6 26 6-32 22-47 (133)
447 smart00763 AAA_PrkA PrkA AAA d 94.3 0.061 1.3E-06 46.3 4.3 27 6-33 78-104 (361)
448 PF00437 T2SE: Type II/IV secr 94.3 0.072 1.6E-06 44.0 4.6 36 6-42 127-162 (270)
449 TIGR03743 SXT_TraD conjugative 94.3 0.076 1.6E-06 49.4 5.1 38 7-45 177-214 (634)
450 COG1428 Deoxynucleoside kinase 94.2 0.052 1.1E-06 43.0 3.4 31 6-40 4-34 (216)
451 KOG3062|consensus 94.2 0.084 1.8E-06 42.3 4.5 36 6-42 1-38 (281)
452 PRK13976 thymidylate kinase; P 94.2 0.098 2.1E-06 41.7 5.0 34 8-42 2-37 (209)
453 PRK14532 adenylate kinase; Pro 94.2 0.045 9.7E-07 42.6 3.0 22 9-31 3-24 (188)
454 TIGR02746 TraC-F-type type-IV 94.2 0.077 1.7E-06 50.8 5.1 36 8-44 432-467 (797)
455 PRK07414 cob(I)yrinic acid a,c 94.2 0.12 2.5E-06 40.1 5.1 34 9-42 23-56 (178)
456 COG2759 MIS1 Formyltetrahydrof 94.2 0.024 5.3E-07 49.5 1.5 35 6-40 52-89 (554)
457 PRK14088 dnaA chromosomal repl 94.1 0.094 2E-06 46.7 5.2 36 6-42 130-167 (440)
458 PRK14738 gmk guanylate kinase; 94.1 0.067 1.5E-06 42.5 3.8 32 5-41 12-43 (206)
459 PF01580 FtsK_SpoIIIE: FtsK/Sp 94.1 0.079 1.7E-06 41.8 4.2 36 8-44 40-79 (205)
460 PF02562 PhoH: PhoH-like prote 94.1 0.099 2.1E-06 41.5 4.7 38 7-45 20-59 (205)
461 PRK13700 conjugal transfer pro 94.0 0.088 1.9E-06 49.2 5.0 40 5-45 184-223 (732)
462 PRK14731 coaE dephospho-CoA ki 94.0 0.11 2.4E-06 41.3 4.9 32 6-42 5-36 (208)
463 PRK12317 elongation factor 1-a 94.0 0.41 8.9E-06 42.4 9.0 30 1-31 1-30 (425)
464 PLN02422 dephospho-CoA kinase 94.0 0.082 1.8E-06 42.8 4.2 32 6-42 1-32 (232)
465 PRK00279 adk adenylate kinase; 93.9 0.066 1.4E-06 42.7 3.6 23 8-31 2-24 (215)
466 PF01591 6PF2K: 6-phosphofruct 93.9 0.14 3E-06 41.2 5.4 34 8-42 14-47 (222)
467 PRK08099 bifunctional DNA-bind 93.9 0.062 1.3E-06 47.2 3.6 25 6-31 219-243 (399)
468 TIGR01499 folC folylpolyglutam 93.9 0.085 1.8E-06 46.2 4.5 35 5-42 17-51 (397)
469 COG0050 TufB GTPases - transla 93.9 0.74 1.6E-05 38.6 9.4 65 117-186 75-139 (394)
470 PRK10536 hypothetical protein; 93.8 0.11 2.4E-06 42.7 4.7 37 7-44 75-113 (262)
471 TIGR01085 murE UDP-N-acetylmur 93.8 0.095 2.1E-06 46.9 4.8 35 5-42 84-118 (464)
472 PRK14733 coaE dephospho-CoA ki 93.8 0.12 2.7E-06 41.0 4.9 32 7-42 7-38 (204)
473 COG2074 2-phosphoglycerate kin 93.8 0.05 1.1E-06 44.3 2.6 31 7-40 89-119 (299)
474 PRK05416 glmZ(sRNA)-inactivati 93.8 0.11 2.4E-06 43.6 4.8 31 3-38 3-33 (288)
475 TIGR01351 adk adenylate kinase 93.8 0.061 1.3E-06 42.8 3.1 22 9-31 2-23 (210)
476 TIGR02640 gas_vesic_GvpN gas v 93.7 0.11 2.4E-06 42.9 4.7 32 7-42 22-53 (262)
477 COG1110 Reverse gyrase [DNA re 93.7 0.1 2.3E-06 50.1 4.9 38 6-44 97-134 (1187)
478 KOG0462|consensus 93.7 0.41 8.8E-06 43.3 8.3 85 116-207 124-208 (650)
479 PRK08356 hypothetical protein; 93.7 0.087 1.9E-06 41.3 3.8 30 6-40 5-34 (195)
480 PLN02674 adenylate kinase 93.7 0.084 1.8E-06 43.1 3.8 25 6-31 31-55 (244)
481 TIGR01420 pilT_fam pilus retra 93.6 0.082 1.8E-06 45.5 3.9 36 6-42 122-158 (343)
482 PRK12740 elongation factor G; 93.6 0.44 9.5E-06 44.8 8.9 93 115-214 58-151 (668)
483 TIGR02836 spore_IV_A stage IV 93.6 0.86 1.9E-05 40.2 9.9 48 160-209 166-213 (492)
484 PRK01438 murD UDP-N-acetylmura 93.5 0.12 2.7E-06 46.3 5.0 34 5-41 121-154 (480)
485 TIGR02768 TraA_Ti Ti-type conj 93.5 0.13 2.8E-06 48.9 5.2 37 7-44 369-405 (744)
486 PRK00139 murE UDP-N-acetylmura 93.5 0.1 2.3E-06 46.6 4.4 34 5-41 94-127 (460)
487 PRK13721 conjugal transfer ATP 93.5 0.1 2.3E-06 50.2 4.7 36 8-44 451-486 (844)
488 cd01127 TrwB Bacterial conjuga 93.5 0.13 2.9E-06 45.3 5.0 38 7-45 43-80 (410)
489 PRK07773 replicative DNA helic 93.5 0.13 2.8E-06 49.9 5.2 34 8-42 219-253 (886)
490 TIGR01650 PD_CobS cobaltochela 93.4 0.082 1.8E-06 45.0 3.4 33 7-40 65-97 (327)
491 PLN02748 tRNA dimethylallyltra 93.4 0.086 1.9E-06 47.1 3.6 26 5-31 21-46 (468)
492 PRK01390 murD UDP-N-acetylmura 93.4 0.13 2.9E-06 45.9 4.9 33 5-40 113-145 (460)
493 TIGR00929 VirB4_CagE type IV s 93.4 0.11 2.4E-06 49.6 4.7 37 7-44 435-472 (785)
494 PRK09518 bifunctional cytidyla 93.4 0.085 1.8E-06 49.9 3.8 24 7-31 2-25 (712)
495 TIGR03015 pepcterm_ATPase puta 93.4 0.083 1.8E-06 43.4 3.3 27 7-34 44-70 (269)
496 COG0466 Lon ATP-dependent Lon 93.3 0.065 1.4E-06 49.7 2.8 34 6-40 350-383 (782)
497 PRK10078 ribose 1,5-bisphospho 93.3 0.074 1.6E-06 41.4 2.8 25 6-31 2-26 (186)
498 TIGR03783 Bac_Flav_CT_G Bacter 93.3 0.13 2.8E-06 49.4 4.8 36 7-43 439-474 (829)
499 PLN02840 tRNA dimethylallyltra 93.2 0.094 2E-06 46.1 3.6 27 5-32 20-46 (421)
500 TIGR01448 recD_rel helicase, p 93.2 0.14 3.1E-06 48.4 5.1 37 7-44 339-377 (720)
No 1
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-38 Score=249.05 Aligned_cols=219 Identities=37% Similarity=0.619 Sum_probs=193.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
||+.|+|||+.+|||||++|+.|+++++++|++|.++||+++|.+... + ++|..++++.+++..++ +.++|+.|
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~--~---~~D~~~l~~~~~~~~~~-~~~~py~f 74 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETA--E---NSDALVLQRLSGLDLSY-ELINPYRF 74 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCC--C---CchHHHHHHhcCCCccc-ccccceec
Confidence 578999999999999999999999999999999999999999887543 1 46899999999987666 67889999
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL 164 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~ 164 (233)
..|.+|++++..++..++.+.+...+.++.+.||+|||||+||+.+|+++.++.+|++..+..|+|+|+..++|++|+++
T Consensus 75 ~~P~sPhlAa~~eg~~I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtl 154 (223)
T COG0132 75 KEPLSPHLAAELEGRTIDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTL 154 (223)
T ss_pred CCCCCcHHHHhhcCCcccHHHHHHHHHhhhcccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhhhcCCC
Q psy14904 165 LSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFS 230 (233)
Q Consensus 165 ~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~~~~~~ 230 (233)
.+++.+++.++++.|+|+|+++ +......+....+++..+.|++|.+|+.++.......++.+++
T Consensus 155 Lt~eal~~~gl~l~G~I~n~~~-~~~~~~~~~~~~l~~~~~~p~~g~~p~~~~~~~~~~~~~~~l~ 219 (223)
T COG0132 155 LTVEALRARGLPLAGWVANGIN-PELDHYAEINATLLKRIGAPLLGIIPYLPESEEEELGKLIDLA 219 (223)
T ss_pred HHHHHHHHCCCCEEEEEEccCC-CchhHHHHHHHHHHHhcCCCccccccCCccccchhhhhhhhhH
Confidence 9999999999999999999998 6554444455578888999999999998876544444444443
No 2
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=100.00 E-value=1.3e-34 Score=234.53 Aligned_cols=219 Identities=32% Similarity=0.494 Sum_probs=185.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
|++.|+|+++.+++|||++|++|+.+|.++|++|.++||+++++...+ .++.+.|+.++++.++.+.++ +.++|+.+
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~--~~~~~~D~~~l~~~~~~~~~~-~~~~p~~~ 77 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETP--EGLRNKDALVLQSVSSIELPY-EAVNPIAL 77 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCC--CCCchHHHHHHHHhcCCCCCH-HhccCeec
Confidence 456799999999999999999999999999999999999998865332 345567888888888876665 56677766
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL 164 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~ 164 (233)
..+ .++..++...+.+++.+.+++++++||+|||||++|+.+|+......+|++.+.+.|+++|+...++++++++
T Consensus 78 ~~~----~a~~~~~~~i~~~~i~~~~~~l~~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~l 153 (231)
T PRK12374 78 SEE----ESSVAHSCPINYTLMSNGLANLSEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHAL 153 (231)
T ss_pred CCC----cChHHcCCcCCHHHHHHHHHHHHhhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHH
Confidence 543 2333445556678899999889999999999999999999987778999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhhhcCCCC
Q psy14904 165 LSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSS 231 (233)
Q Consensus 165 ~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~~~~~~~ 231 (233)
.+.+.++..+++++|+|+|+++ +......++.+.+++..++|++|.||+.+.+....++++|+++.
T Consensus 154 Lt~~~l~~~~~~~~gvV~N~~~-~~~~~~~~~~~~l~~~~~~~~lg~iP~~~~~~~~~~~~~l~~~~ 219 (231)
T PRK12374 154 LTAQAIANDGLPLIGWVANRIN-PGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIDLSM 219 (231)
T ss_pred HHHHHHHhCCCcEEEEEEeCcc-CchhhhhhHHHHHHHhcCCCEEEEeCCCCCCChHHHHhhcChhh
Confidence 9999999999999999999998 65444456678888888999999999998888778888888764
No 3
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=100.00 E-value=1.2e-34 Score=230.07 Aligned_cols=199 Identities=35% Similarity=0.549 Sum_probs=163.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
|.|+|+++.+++|||+++++|+++|.++|.+|.++||++++... ++|..+++..+++..+. +.+.++.+..
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~--------d~d~~~~~~~~~~~~~~-~~~~~~~~~~ 71 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPED--------DEDAELIRELFGLSEPP-DDPSPYTFDE 71 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCC--------SSHHHHHHHHCCTCCCH-HHHECEEESS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCC--------CchHHHHHHHhCCCccc-ccccccccCc
Confidence 57999999999999999999999999999999999999987763 24888888888876654 4567888998
Q ss_pred CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS 166 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~ 166 (233)
+.+++.++..++.....+++. ++++++++|++||||+++..+|.....+++++++.+++|+++|++.+.++++++..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~i~--~~~l~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~ 149 (199)
T PF13500_consen 72 PASPHLAAELEGVDIDLERII--YKELAEEYDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLT 149 (199)
T ss_dssp SS-HHHHHHHHT----HHHHH--HHHCHTTTCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHH
T ss_pred ccCHHHHhhccCCcccHHHHH--HHHHhhcCCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHH
Confidence 889998887777655566665 688889999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhh
Q psy14904 167 LEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINL 222 (233)
Q Consensus 167 ~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~ 222 (233)
++.+++.|++++|+|+|+++ +. +..+.+++..++|++|+||+++.+++|+
T Consensus 150 ~~~~~~~g~~v~GvI~N~~~-~~-----~~~~~l~~~~~i~vlg~iP~~~~L~~p~ 199 (199)
T PF13500_consen 150 IEALKQRGIRVLGVILNRVP-EP-----ENLEALREKSGIPVLGVIPEDPDLSAPT 199 (199)
T ss_dssp HHHHHCTTS-EEEEEEEECT-CC-----HHHHHHHHHHCCEECE---SSTT-----
T ss_pred HHHHHhcCCCEEEEEEECCC-CH-----HHHHHHHHhCCCCEEEECCCCcccccCC
Confidence 99999999999999999987 32 4788888889999999999999999874
No 4
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=100.00 E-value=3.7e-34 Score=230.85 Aligned_cols=217 Identities=38% Similarity=0.669 Sum_probs=186.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP 87 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (233)
.|+|+++.+|+|||+++++|+++|+++|++|.++||+++++.... .+.|..++.+.++++.++ ..++++.+..|
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~-----~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~ 74 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETD-----RNGDALALQRLSGLPLDY-EDVNPYRFEEP 74 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCC-----CcHHHHHHHHHcCCCCCh-hhcCceeeCCC
Confidence 389999999999999999999999999999999999998765311 235888888888876554 55678888889
Q ss_pred CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHH
Q psy14904 88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSL 167 (233)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~ 167 (233)
.+|++++.+++.....+++.+.+++++++||+|||||+||+..|+...+.++|+++.+++|+++|+..+.++++++..++
T Consensus 75 ~sp~~a~~~~~~~~~~~~i~~~~~~l~~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i 154 (222)
T PRK00090 75 LSPHLAAALEGVAIDLEKISAALRRLAQQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTL 154 (222)
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHhhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHH
Confidence 99999887777767788999999999999999999999999888877788999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEcccCCCc-hhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhhhcCCCC
Q psy14904 168 EAINSRGLKLIGWVANHTQIVD-TLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSS 231 (233)
Q Consensus 168 ~~l~~~~~~i~GiVlN~~~~~~-~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~~~~~~~ 231 (233)
+.+++.++++.|+|+|+++ ++ ....++..+.+++.+++|++|.||+........+.++++.+.
T Consensus 155 ~~l~~~~~~i~gvIlN~~~-~~~~~~~~~~~~~l~~~~gi~vlg~ip~~~~~~~~~~~~~~~~~~ 218 (222)
T PRK00090 155 EAIRARGLPLAGWVANGIP-PEPGLRHAENLATLERLLPAPLLGELPYLAEAELAAAAEYLDLDL 218 (222)
T ss_pred HHHHHCCCCeEEEEEccCC-CcchhHHHHHHHHHHHHcCCCeEEecCCCCCcchHHHHhhCCHHh
Confidence 9998889999999999998 65 445567788999999999999999976666667777777654
No 5
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.96 E-value=6.1e-28 Score=186.15 Aligned_cols=166 Identities=37% Similarity=0.628 Sum_probs=139.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCCCC
Q psy14904 10 FITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPIS 89 (233)
Q Consensus 10 ~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (233)
+|+++.+|+||||++++|+.+|+++|+||+++||++++.... +.|..++++..+...++ +.+.++.+..|.+
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~-------d~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~ 72 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKT-------NSDALLLQNISGTALDW-DEVNPYAFALPLS 72 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCC-------chHHHHHHHHcCCCCch-hccCCeeeCCCCC
Confidence 589999999999999999999999999999999999875422 24677777766655444 4455666666666
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHH
Q psy14904 90 PYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEA 169 (233)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~ 169 (233)
|.......+.....+++.+.+++++++||+|||||++|+..|+.....++++++.+++++|+|++.+.++++++..+.+.
T Consensus 73 p~~~~~~~~~~~~~~~i~~~~~~l~~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~ 152 (166)
T TIGR00347 73 PHIAADQEGRPIDLEELSKHLRTLEQKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEH 152 (166)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHhcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH
Confidence 66655444445567789999999999999999999999988887777899999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEEc
Q psy14904 170 INSRGLKLIGWVAN 183 (233)
Q Consensus 170 l~~~~~~i~GiVlN 183 (233)
+++.++++.|+|+|
T Consensus 153 l~~~~~~i~gvv~N 166 (166)
T TIGR00347 153 ARQTGLTLAGVILN 166 (166)
T ss_pred HHHCCCCeEEEEeC
Confidence 99999999999998
No 6
>PRK00784 cobyric acid synthase; Provisional
Probab=99.96 E-value=1.9e-27 Score=211.41 Aligned_cols=212 Identities=20% Similarity=0.265 Sum_probs=159.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCccc--CCCCCCccchHHHHHHHH-hCCCcccccceee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYL--NNKNKIWFNEDVNLLNKY-SNSLYEFTKLINP 81 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~--~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~ 81 (233)
|||.|+|+|+.+|||||++|++|+++|+++|++|.++||++..... .+ ++....|+.++++. .+.. +. +.++|
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kpv~~~~~~~~~~--dg~~~~Da~~l~~~~~~~~-~~-~~i~P 76 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKAQNMSLNSAVTA--DGGEIGRAQALQAEAAGVE-PS-VDMNP 76 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccchhccccceECC--CCCeeHHHHHHHHHhCCCC-ch-hccCC
Confidence 4788999999999999999999999999999999999997422110 11 12223577777654 4443 22 46778
Q ss_pred eeecCCCChhhhh-hh--------------cCCCCCHHHHHHHHHHhhcCCCeEEEeccCccc-CccCC-CCchHHHHHH
Q psy14904 82 YLFKYPISPYTSS-NL--------------ENRIINTSHIINCYNYLSNLTDVIILEGIGGFS-VPFHD-NENSADLAEK 144 (233)
Q Consensus 82 ~~~~~~~~~~~~~-~~--------------~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~-~p~~~-~~~~~~l~~~ 144 (233)
+.+. |.+|+.++ .. ++.....+++.+.+++++++||++||||++|+. .|+.. ..+++++|+.
T Consensus 77 ~~~~-~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~ 155 (488)
T PRK00784 77 VLLK-PQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLAAEYDVVVVEGAGSPAEINLRDRDIANMGFAEA 155 (488)
T ss_pred EEec-CCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHHhcCCEEEEECCCCccccCcccCCchhHHHHHH
Confidence 7664 55555432 11 223355788999999898999999999999987 45532 4679999999
Q ss_pred hCCCEEEEEcCCCC-cHHHHHHHHHHHHh-CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhh
Q psy14904 145 LGLPIILVIDLKIG-CINNALLSLEAINS-RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINL 222 (233)
Q Consensus 145 ~~~~vllV~~~~~~-~~~~~~~~~~~l~~-~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~ 222 (233)
+++|+|+|++.+.+ +++++..+.+.++. .+++++|+|+|+++ +.....++..+.+++..++|++|.||+++.+..+.
T Consensus 156 l~~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~-~~~~~~~~~~~~l~~~~gipvLG~iP~~~~L~~~~ 234 (488)
T PRK00784 156 ADAPVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFR-GDISLLEPGLDWLEELTGVPVLGVLPYLDDLRLPA 234 (488)
T ss_pred cCCCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCC-CCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCcCh
Confidence 99999999999887 57777767677663 35799999999998 64333456667788888999999999999876553
No 7
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.95 E-value=1.4e-25 Score=207.93 Aligned_cols=209 Identities=22% Similarity=0.286 Sum_probs=166.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHh---------------
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS--------------- 69 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~--------------- 69 (233)
..+.++|+|+.++||||.+++.|+.+++++|.+|.++||+++|+... .|..++.+..
T Consensus 26 ~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~KPvqTG~~~~--------~Da~~v~~~~~~~~~~~~~~~~~~~ 97 (817)
T PLN02974 26 SCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYVKPVQTGFPDD--------SDARFVFRKADSLSRRSESLFASNR 97 (817)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEEEECCCCCC--------ccHHHHHHhhhcccccccccccccc
Confidence 46789999999999999999999999999999999999999987431 2444444321
Q ss_pred ---------------------------CCCc---ccc-cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh----
Q psy14904 70 ---------------------------NSLY---EFT-KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS---- 114 (233)
Q Consensus 70 ---------------------------~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---- 114 (233)
|... ... ...+++.+..|.+|++++..++..++.+.|.+.++++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~SPhlAA~~eg~~i~~~~i~~~~~~~l~~~~ 177 (817)
T PLN02974 98 TLFLSPPAAKSALGGVSSMGAHAAVNAGAEAGVTSSALWCHTLFAWRRAVSPHLAARREGRGVSDDEVLEAVNRSLREVG 177 (817)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCceecCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 1110 000 11256788899999999988888888888888887632
Q ss_pred -----cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCc
Q psy14904 115 -----NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD 189 (233)
Q Consensus 115 -----~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~ 189 (233)
+.+|++||||+||+.+|+....+.+|+++.++.|+|+|++..+|++++++.+++.++.+|+++.|+|+|...
T Consensus 178 ~~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~--- 254 (817)
T PLN02974 178 ANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG--- 254 (817)
T ss_pred cccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc---
Confidence 258999999999999999999999999999999999999999999999999999999999999999999533
Q ss_pred hhhhhhhHHHHHhhc--CCCceEecCCCCCCChhhhhhhcCC
Q psy14904 190 TLFANENYIELTKYL--NVTPLGRIPYLYNLNINLISHYLDF 229 (233)
Q Consensus 190 ~~~~~~~~~~l~~~~--~~pvlg~IP~~~~l~~~~~~~~~~~ 229 (233)
.++.+.|++++ ++|++ .+|.-+.-....+.+|++.
T Consensus 255 ----~~N~~~l~~~~~~~~pv~-~lp~~p~~~~~~~~~~~~~ 291 (817)
T PLN02974 255 ----LSNEKALLSYLSNRVPVF-VLPPVPEDPGDDLDEWFDD 291 (817)
T ss_pred ----cchHHHHHHHHhcCCcEE-eCCCCCCCcchhHHHHHHh
Confidence 24566666553 89998 5566554444557777653
No 8
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.94 E-value=3.9e-25 Score=195.63 Aligned_cols=207 Identities=18% Similarity=0.161 Sum_probs=147.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHh-CCCcccccceeeeeecCC
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS-NSLYEFTKLINPYLFKYP 87 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~ 87 (233)
|+|+||.+++|||++|++|++.|+++|++|.++||+...........+.-..+...++... +. .+. ..++|+.+..+
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~-~~~-~~~nPv~lk~~ 78 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI-EPS-VHMNPILLKPK 78 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-Cch-hccCCEEeCcC
Confidence 6899999999999999999999999999999999985222110000111112344444333 43 233 56788888654
Q ss_pred C---Chhhhhh------------hcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccC--ccCCCCchHHHHHHhCCCEE
Q psy14904 88 I---SPYTSSN------------LENRIINTSHIINCYNYLSNLTDVIILEGIGGFSV--PFHDNENSADLAEKLGLPII 150 (233)
Q Consensus 88 ~---~~~~~~~------------~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~--p~~~~~~~~~l~~~~~~~vl 150 (233)
. ++..... .++.....+.+++.+++++++||+|||||++|+.. +.....+++++++.+++|++
T Consensus 79 ~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVI 158 (475)
T TIGR00313 79 GNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILAREYDYVVIEGAGSPAEINLLKRDLANMRIAELANADAI 158 (475)
T ss_pred CCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHHhcCCEEEEECCCCccccccCcCCchHHHHHHHhCCCEE
Confidence 1 2111111 01113446788899999999999999999999875 22245678999999999999
Q ss_pred EEEcCCCCc-HHHHHHHHHHHHhC-CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCC
Q psy14904 151 LVIDLKIGC-INNALLSLEAINSR-GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNL 218 (233)
Q Consensus 151 lV~~~~~~~-~~~~~~~~~~l~~~-~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l 218 (233)
+|++.+.++ +.++..+++.++.. +.++.|+|+||++ ++....++..+.+++..|+|++|++|+++.+
T Consensus 159 LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~-~~~~~~~~~~~~l~e~~gipvLG~ip~~~~l 227 (475)
T TIGR00313 159 LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFR-GNVDVLKSGIEKLEELTGIPVLGVLPYDENL 227 (475)
T ss_pred EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccC-CcHHHHHHHHHHHHHhhCCCEEEEecCCCcC
Confidence 999988764 35666666666543 4689999999998 6543445677788888899999999998766
No 9
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.93 E-value=4.9e-24 Score=188.09 Aligned_cols=181 Identities=18% Similarity=0.298 Sum_probs=136.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+|+.|+|+++++|+||||+|++|+.+|+++|++|.++|| |++.. |..++....|.+. .+++++.+
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~---Gpd~~---------d~~~~~~~~g~~~---~~ld~~~~ 66 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV---GPDYI---------DPAYHTAATGRPS---RNLDSWMM 66 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec---CCCcc---------cHHHHHHHhCCCc---ccCCceeC
Confidence 378899999999999999999999999999999999996 55432 4455555566432 23443322
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCcc---CCCCchHHHHHHhCCCEEEEEcCCCCc--
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPF---HDNENSADLAEKLGLPIILVIDLKIGC-- 159 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~---~~~~~~~~l~~~~~~~vllV~~~~~~~-- 159 (233)
..+.+++.+++++++||++||||++|++++. ....+++++|+.+++|+++|++.+..+
T Consensus 67 -----------------~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~ 129 (451)
T PRK01077 67 -----------------GEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQS 129 (451)
T ss_pred -----------------CHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHH
Confidence 3467899999999999999999999997643 245689999999999999999987533
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN 221 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~ 221 (233)
+..+......+ +.++++.|+|+|++. +.. ..+...+.+++ .++|++|+||+++.+..|
T Consensus 130 ~a~l~~~~~~~-~~~i~i~GvI~N~v~-~~~-~~~~l~~~l~~-~gipvLG~IP~~~~l~~p 187 (451)
T PRK01077 130 AAALVLGFATF-DPDVRIAGVILNRVG-SER-HYQLLREALER-CGIPVLGALPRDAALALP 187 (451)
T ss_pred HHHHHHHHHHh-CCCCCEEEEEEECCC-Chh-HHHHHHHHHHh-cCCCEEEEeeCCcccCCC
Confidence 33344444443 447899999999997 432 22233455554 799999999999987644
No 10
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.92 E-value=1e-23 Score=185.78 Aligned_cols=178 Identities=22% Similarity=0.379 Sum_probs=135.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP 87 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (233)
.|+|+++.+|+|||++|++|+++|+++|++|.++|| +++.. |..++....|.+. .+++++.
T Consensus 1 ~~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~---g~d~~---------D~~~~~~~~g~~~---~~ld~~~---- 61 (449)
T TIGR00379 1 RVVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV---GPDYI---------DPMFHTQATGRPS---RNLDSFF---- 61 (449)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc---CCCCC---------CHHHHHHHhCCch---hhCCccc----
Confidence 389999999999999999999999999999999996 44432 3444555566431 2333322
Q ss_pred CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCccc---CccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904 88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFS---VPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL 164 (233)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~---~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~ 164 (233)
.+.+.+++.++++.+++|++||||++|+. .|+....+++++|+.++.|+|+|++.. +++++.
T Consensus 62 -------------~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~ 126 (449)
T TIGR00379 62 -------------MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSA 126 (449)
T ss_pred -------------CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHH
Confidence 24578999999999999999999999987 455555689999999999999999987 333333
Q ss_pred HHHH---HHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904 165 LSLE---AINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN 221 (233)
Q Consensus 165 ~~~~---~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~ 221 (233)
.++. ...+.++++.|+|+|++. +. ...+...+.+++..++|++|+||+++.+..|
T Consensus 127 ~al~~~~~~~~~~i~i~GvIlN~v~-~~-~~~~~~~~~i~~~~gipvLG~IP~~~~l~~p 184 (449)
T TIGR00379 127 AAIVLGYRSFDPGVKLKGVILNRVG-SE-RHLEKLKIAVEPLRGIPILGVIPRQQDLKVP 184 (449)
T ss_pred HHHHHHHHhhCCCCCEEEEEEECCC-CH-HHHHHHHHHHHHhCCCCEEEEecCccccCCC
Confidence 3321 113468999999999998 53 2334556788888899999999999887654
No 11
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.92 E-value=5.7e-24 Score=182.65 Aligned_cols=195 Identities=12% Similarity=0.041 Sum_probs=122.1
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcc----c-ccc
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYE----F-TKL 78 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~----~-~~~ 78 (233)
.++++|+|+|.||||||||+|+|||.+|+++|+||+++| .+++.... +. .+|.... . ...
T Consensus 105 ~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID---~D~qgps~-~~-----------~lg~~~~~~~~~~~~~ 169 (369)
T PRK11670 105 GVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILD---ADIYGPSI-PT-----------MLGAEDQRPTSPDGTH 169 (369)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEe---CCCCCCCc-ch-----------hcCCcccCCcccCCce
Confidence 357899999999999999999999999999999999999 33332110 00 0111000 0 011
Q ss_pred eeeeeecC--CCChhhhhhhcC----C-CCCHHHHHHHHH-HhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEE
Q psy14904 79 INPYLFKY--PISPYTSSNLEN----R-IINTSHIINCYN-YLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPII 150 (233)
Q Consensus 79 ~~~~~~~~--~~~~~~~~~~~~----~-~~~~~~l~~~~~-~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vl 150 (233)
+.|..... ..+.......+. + ......+.+.+. .+.++|||||||||||+... .++.+.++. .+.++
T Consensus 170 i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~---~l~~~~l~a--ad~vi 244 (369)
T PRK11670 170 MAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDI---QLTLAQNIP--VTGAV 244 (369)
T ss_pred eeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchH---HHHHhhhcc--CCeEE
Confidence 22211110 000000000000 1 112345666663 56678999999999986421 111222221 13578
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchh---h-----hhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 151 LVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTL---F-----ANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 151 lV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~---~-----~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
+|+.++..++.++...++.+++.+++++|+|.|++. .+.. . .....+.+++.++.++++.||.+..+.
T Consensus 245 iV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~-~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ 320 (369)
T PRK11670 245 VVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSM-HICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLR 320 (369)
T ss_pred EEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCc-cccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHH
Confidence 888888878888888888888899999999999986 2211 1 112467788889999999999998755
No 12
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.92 E-value=9e-24 Score=179.13 Aligned_cols=180 Identities=19% Similarity=0.293 Sum_probs=140.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
+.|.|+++.+|+||||+|++|+++|+++|++|--|| .|||+.| |++ +..++|.+. .|+++|...
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfK---vGPDYID--P~~-------H~~atG~~s---rNLD~~mm~- 64 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFK---VGPDYID--PGY-------HTAATGRPS---RNLDSWMMG- 64 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccc---cCCCccC--chh-------hhHhhCCcc---CCCchhhcC-
Confidence 358999999999999999999999999999999999 8999887 553 455566432 466666532
Q ss_pred CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccC---CCCchHHHHHHhCCCEEEEEcCCCCcHH--
Q psy14904 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFH---DNENSADLAEKLGLPIILVIDLKIGCIN-- 161 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~---~~~~~~~l~~~~~~~vllV~~~~~~~~~-- 161 (233)
.+.+++.+.+-.++.|+.||||..|++++.. +..+.+++|+.+++|||+|++....+-+
T Consensus 65 ----------------~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~A 128 (451)
T COG1797 65 ----------------EEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVA 128 (451)
T ss_pred ----------------HHHHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHH
Confidence 3568889999899999999999999987632 3468999999999999999998743222
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904 162 NALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN 221 (233)
Q Consensus 162 ~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~ 221 (233)
.+....+. -+.++++.|||+||+. +. ...+-..+.+++..++||+|+||+++++..|
T Consensus 129 Aiv~G~~~-fdp~v~iaGVIlNrVg-se-rH~~llr~Ale~~~gv~vlG~lpr~~~l~lp 185 (451)
T COG1797 129 AIVKGFKH-FDPDVNIAGVILNRVG-SE-RHYELLRDALEEYTGVPVLGYLPRDDDLELP 185 (451)
T ss_pred HHHHHHHh-cCCCCceEEEEEecCC-CH-HHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence 22222222 1578999999999998 42 2334455688888899999999999988877
No 13
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.4e-24 Score=168.37 Aligned_cols=188 Identities=15% Similarity=0.162 Sum_probs=122.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHH-------------------H
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNL-------------------L 65 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~-------------------~ 65 (233)
|.++|.|||.||||||||+++||+.+||++|+||+++| .+. ||++-|.-. +
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD---~Di-------GLRNLDlimGlE~RiVYd~vdVi~g~~~l 70 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLID---FDI-------GLRNLDLIMGLENRIVYDLVDVIEGEATL 70 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEe---cCc-------CchhhhhhhcccceeeeeehhhhcCccch
Confidence 46899999999999999999999999999999999998 322 222212110 0
Q ss_pred HHHhCCCcccccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHH
Q psy14904 66 NKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEK 144 (233)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~ 144 (233)
.+++ +.+..-+++ +.+ |.+ ..+....+..+.+...+++|+ .+|||||||||+|+-.+. ..|..
T Consensus 71 ~QAL-IkDKr~~nL--~lL--PAs----QtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~-------~~A~~ 134 (272)
T COG2894 71 NQAL-IKDKRLENL--FLL--PAS----QTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGF-------KNAVY 134 (272)
T ss_pred hhHh-hccccCCce--Eec--ccc----cccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHH-------Hhhhh
Confidence 1110 000000111 111 111 112223467788888899888 799999999999875432 23333
Q ss_pred hCCCEEEEEcCCCCcHHHHHHHHHHHHhCC----C---cEEEEEEcccCCCchhhhhhh--HHHHHhhcCCCceEecCCC
Q psy14904 145 LGLPIILVIDLKIGCINNALLSLEAINSRG----L---KLIGWVANHTQIVDTLFANEN--YIELTKYLNVTPLGRIPYL 215 (233)
Q Consensus 145 ~~~~vllV~~~~~~~~~~~~~~~~~l~~~~----~---~i~GiVlN~~~~~~~~~~~~~--~~~l~~~~~~pvlg~IP~~ 215 (233)
.....++|+.++..++.++-..+-.+...+ . .-..+++||++ |......++ .+.+.+.+.+|++|.||++
T Consensus 135 ~Ad~AiVVtnPEvSsVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~-p~~v~~GeMlsv~Dv~~iL~i~liGiiPed 213 (272)
T COG2894 135 FADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYR-PEMVKRGEMLSVEDVLEILSIPLIGVIPED 213 (272)
T ss_pred ccceEEEEcCCCccccccchhheeehhcccchhhcCCcccceEEEEccC-HHHhccCCcccHHHHHHHhCCceEEeecCc
Confidence 334789999999887776655554443221 1 12568999999 654333333 4677778999999999999
Q ss_pred CCCC
Q psy14904 216 YNLN 219 (233)
Q Consensus 216 ~~l~ 219 (233)
+.+-
T Consensus 214 ~~Vi 217 (272)
T COG2894 214 QDVL 217 (272)
T ss_pred hhhh
Confidence 8765
No 14
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.91 E-value=1.6e-23 Score=171.62 Aligned_cols=194 Identities=19% Similarity=0.221 Sum_probs=122.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCccchHHHHHHHHhCCCccccccee----
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNEDVNLLNKYSNSLYEFTKLIN---- 80 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~---- 80 (233)
++|+|+|.||||||||+|+|||.+|+++|+||+++| .+++... ..-+....+..+.....+. ....+.+.
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD---~D~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 76 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALD---ADITMANLELILGMEDKPVTLHDVLAGE-ADIKDAIYEGPF 76 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEe---CCCCCccceeEeCCCCCCCCHHHHhcCC-CCHHHheEeCCC
Confidence 489999999999999999999999999999999998 3332110 0011111111111111111 11100000
Q ss_pred -eeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc
Q psy14904 81 -PYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC 159 (233)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~ 159 (233)
...+ |....... ......+.+.+.++.++++||+|||||||++.. .....+. ....+++|+.++..+
T Consensus 77 ~l~~l--p~~~~~~~---~~~~~~~~l~~~l~~l~~~yD~VIiD~p~~~~~-----~~~~~l~--~ad~vliv~~~~~~s 144 (251)
T TIGR01969 77 GVKVI--PAGVSLEG---LRKADPDKLEDVLKEIIDDTDFLLIDAPAGLER-----DAVTALA--AADELLLVVNPEISS 144 (251)
T ss_pred CEEEE--eCCCCHHH---HhhcCHHHHHHHHHHHHhhCCEEEEeCCCccCH-----HHHHHHH--hCCeEEEEECCCCch
Confidence 0011 11111110 011245678888988989999999999988742 1122222 224699999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
+.++....+..++.+.++.|+|+|+++ ++.. ....+.+++.++.|+++.||+++.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~vv~N~~~-~~~~--~~~~~~l~~~~~~~~l~~Ip~~~~~~ 201 (251)
T TIGR01969 145 ITDALKTKIVAEKLGTAILGVVLNRVT-RDKT--ELGREEIETILEVPVLGVVPEDPEVR 201 (251)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEECCC-chhh--hhHHHHHHHhhCCcEEEEecCCHhHH
Confidence 887777777777778889999999998 4321 22345677778999999999998764
No 15
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.91 E-value=4.8e-23 Score=189.79 Aligned_cols=191 Identities=19% Similarity=0.212 Sum_probs=138.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
|||.|+|+++.+|+|||++|++|+.+|.++|++|.+|||+++++.. ...+ ..... . ..
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~--------~~~~---~~~~~--~---~~------ 58 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLT--------MSEV---EALLA--S---GQ------ 58 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC--------HHHH---HHHHh--c---cC------
Confidence 4678999999999999999999999999999999999998876321 0111 11100 0 00
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHH---
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCIN--- 161 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~--- 161 (233)
.....+++.+.++++.++||+|||||+++.........+++++|+.+++|+++|++.+.+++.
T Consensus 59 --------------~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~ 124 (684)
T PRK05632 59 --------------LDELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELA 124 (684)
T ss_pred --------------ChHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHH
Confidence 012346788889899999999999999765543333457899999999999999999987754
Q ss_pred -HHHHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHH-----------------HhhcCCCceEecCCCCCCChh-
Q psy14904 162 -NALLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIEL-----------------TKYLNVTPLGRIPYLYNLNIN- 221 (233)
Q Consensus 162 -~~~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l-----------------~~~~~~pvlg~IP~~~~l~~~- 221 (233)
++....+.+. ..+.++.|+|+|+++.+.. ..+.....+ .+..++|++|+||+++.+.++
T Consensus 125 ~~i~~~~~~l~~~~~~~v~GVIvNr~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t 203 (684)
T PRK05632 125 ERIELAASSFGGAKNANILGVIINKLNAPVD-EQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPR 203 (684)
T ss_pred HHHHHHHHHhccCCCCcEEEEEEECCCCCHH-HHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCC
Confidence 4555555655 6789999999999431111 222333333 123589999999999999988
Q ss_pred --hhhhhcCCCCC
Q psy14904 222 --LISHYLDFSSL 232 (233)
Q Consensus 222 --~~~~~~~~~~~ 232 (233)
++++.|+.+.+
T Consensus 204 ~~~i~~~L~~~vl 216 (684)
T PRK05632 204 VIDIAKHLGATVL 216 (684)
T ss_pred HHHHHHHcCCEEE
Confidence 46777777653
No 16
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.91 E-value=6.3e-23 Score=158.63 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=113.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP 87 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (233)
+|+|+|+|||+||||+|.|||.+++++|+||+++| .+++... ..++ +..+
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD---~D~q~~~---------~~~~------------------~~~~ 50 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLD---ADIYGPS---------IPKM------------------WRGP 50 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEe---CCCCCCC---------chHH------------------HhCc
Confidence 58999999999999999999999999999999999 4443211 0000 0000
Q ss_pred CChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH-HhCCCEEEEEcCCCCcHHHHHH
Q psy14904 88 ISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE-KLGLPIILVIDLKIGCINNALL 165 (233)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~-~~~~~vllV~~~~~~~~~~~~~ 165 (233)
.....+.+.++++. ++||+|||||||++.. ....... .....+++|+.++..++.++..
T Consensus 51 -------------~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~------~~~~~~~~~~ad~viiV~~p~~~s~~~~~~ 111 (169)
T cd02037 51 -------------MKMGAIKQFLTDVDWGELDYLVIDMPPGTGD------EHLTLAQSLPIDGAVIVTTPQEVALDDVRK 111 (169)
T ss_pred -------------chHHHHHHHHHHhhcCCCCEEEEeCCCCCcH------HHHHHHhccCCCeEEEEECCchhhHHHHHH
Confidence 01123455555554 7899999999987532 0111111 2234789999999889999999
Q ss_pred HHHHHHhCCCcEEEEEEcccCCCc----hh---h-hhhhHHHHHhhcCCCceEecCCCC
Q psy14904 166 SLEAINSRGLKLIGWVANHTQIVD----TL---F-ANENYIELTKYLNVTPLGRIPYLY 216 (233)
Q Consensus 166 ~~~~l~~~~~~i~GiVlN~~~~~~----~~---~-~~~~~~~l~~~~~~pvlg~IP~~~ 216 (233)
.++.+++.+.++.|+|+||+. +. .. . .....+.+.+.++.|++|.||+++
T Consensus 112 ~~~~l~~~~~~~~gvv~N~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 112 AIDMFKKVNIPILGVVENMSY-FVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred HHHHHHhcCCCeEEEEEcCCc-ccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 999999999999999999997 31 11 1 123557777788999999999975
No 17
>CHL00175 minD septum-site determining protein; Validated
Probab=99.91 E-value=1.3e-23 Score=175.11 Aligned_cols=201 Identities=17% Similarity=0.123 Sum_probs=125.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCccchHHHHHHHHhCCCcccccce-e
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNEDVNLLNKYSNSLYEFTKLI-N 80 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~-~ 80 (233)
++.++|+|+|.||||||||+|.|||.+|+++|+||+++| .+++..+ ...++.+....-+.........+.+.+ .
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD---~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALID---ADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR 89 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEe---CCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence 367899999999999999999999999999999999998 3332111 001111000000011110000000000 0
Q ss_pred ----eeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhc-CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904 81 ----PYLFKYPISPYTSSNLENRIINTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL 155 (233)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~ 155 (233)
+...-.|.+.. ........+.+.+.++.+.+ .||||||||||++... ....... ...+++|+++
T Consensus 90 ~~~~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~------~~~~l~~-aD~viiV~~p 158 (281)
T CHL00175 90 DKRWKNLSLLAISKN----RQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDVG------FINAIAP-AQEAIVVTTP 158 (281)
T ss_pred cCCCCCeEEEeCCCc----hhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHH------HHHHHHh-cCeeEEEcCC
Confidence 00000111111 11112345568888888887 9999999999886421 1122222 2478999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh--hhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN--ENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~--~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
+..++.++...++.+++.+....++|+|+++ ++..... ...+.+++.++.++++.||+++.+.
T Consensus 159 ~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~Ip~d~~v~ 223 (281)
T CHL00175 159 EITAIRDADRVAGLLEANGIYNVKLLVNRVR-PDMIQANDMMSVRDVQEMLGIPLLGAIPEDENVI 223 (281)
T ss_pred ChHHHHHHHHHHHHHHHcCCCceEEEEeccC-hhhhhhhccccHHHHHHHhCCCeEEEccCCHhHH
Confidence 9988888888888888777777899999998 5321111 1346678888999999999998665
No 18
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.90 E-value=2.4e-22 Score=149.46 Aligned_cols=132 Identities=34% Similarity=0.571 Sum_probs=115.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCCC
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPI 88 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (233)
+++++ .|+|||+++.+|+..|+++|++|.++||.. .
T Consensus 3 ~~~~~--~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~-------------------------------~----------- 38 (134)
T cd03109 3 GFGTG--TDIGKTVATAILARALKEKGYRVAPLKPVQ-------------------------------T----------- 38 (134)
T ss_pred EEeCC--CCcCHHHHHHHHHHHHHHCCCeEEEEecCC-------------------------------C-----------
Confidence 45555 469999999999999999999999998320 0
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHH
Q psy14904 89 SPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLE 168 (233)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~ 168 (233)
+|+++|||++|+.+|+....+.+|+++.++.|+++|++++.++++++..+++
T Consensus 39 ----------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~ 90 (134)
T cd03109 39 ----------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIE 90 (134)
T ss_pred ----------------------------CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904 169 AINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP 213 (233)
Q Consensus 169 ~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP 213 (233)
.++..++.+.|+|.|++. +.........+.+++..++|++|.||
T Consensus 91 ~l~~~g~~i~gvi~N~~~-~~~~~~~~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 91 AARIKGIILNGVLGNVIV-EKEGLATLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred HHHhcCCceeEEEEccCC-CccchhhhhHHHHHHhcCCCEEEeCC
Confidence 999999999999999998 54333335677888889999999998
No 19
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.90 E-value=8.5e-22 Score=171.26 Aligned_cols=175 Identities=24% Similarity=0.386 Sum_probs=132.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
|+.|+|+++.+|+||||++++|+.+|.++|++|..+| .|++.. |..++..+.|.+. .+++|+..
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K---~Gpd~i---------D~~~~~~~~g~~~---~nld~~~~- 64 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAK---AGPDFI---------DPSHHEAVAGRPS---RTLDPWLS- 64 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEe---eCCCCC---------CHHHHHHHhCCCc---ccCChhhC-
Confidence 5679999999999999999999999999999999999 577754 4456677777542 34444422
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc--HHHH
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC--INNA 163 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~--~~~~ 163 (233)
..+.+++.+.+ ..+|++||||.+|+.++ ...+.+|+++.++.|+|+|++...++ +..+
T Consensus 65 ----------------~~~~i~~~~~~--~~~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~ 124 (433)
T PRK13896 65 ----------------GEDGMRRNYYR--GEGDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAAT 124 (433)
T ss_pred ----------------CHHHHHHHHHh--hcCCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHH
Confidence 12446665543 35999999999999864 33689999999999999999999985 4445
Q ss_pred HHHHHHHH---hCCCcEEEEEEcccCCCchhhhhhh-HHHHHhhcCCCceEecCCCCCCChh
Q psy14904 164 LLSLEAIN---SRGLKLIGWVANHTQIVDTLFANEN-YIELTKYLNVTPLGRIPYLYNLNIN 221 (233)
Q Consensus 164 ~~~~~~l~---~~~~~i~GiVlN~~~~~~~~~~~~~-~~~l~~~~~~pvlg~IP~~~~l~~~ 221 (233)
+.....+. ..++++.|||+|++. +. .+.+. .+.+++ ++|++|.||+++.+..|
T Consensus 125 l~g~~~~~~~~~~~~~i~GvIlN~~~-~~--~h~~~l~~~~~~--~i~vlG~lP~~~~~~~~ 181 (433)
T PRK13896 125 ALGFRAYADRIGRDIDVAGVIAQRAH-GG--RHADGIRDALPD--ELTYFGRIPPRDDLEIP 181 (433)
T ss_pred HHHHHHHHHhccCCCcEEEEEEECCC-cH--HHHHHHHHhhhh--cCceeEecccCCCCCCC
Confidence 66654333 258999999999998 42 23333 344444 79999999999988765
No 20
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.89 E-value=1.2e-21 Score=172.11 Aligned_cols=174 Identities=18% Similarity=0.273 Sum_probs=127.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+|+.|+|+++.+|+||||+|++|+.+|+++ |..+| .|++..| . . -..+.+
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK---~GpD~id---------~------~---------p~~~~~ 286 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAK---IGPDVRD---------I------V---------PSLYLL 286 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEc---CCCChhh---------c------C---------Ccceec
Confidence 477899999999999999999999999986 88899 4554321 0 0 012445
Q ss_pred cCCCChhhhhhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCC---CchHHHHHHhCCCEEEEEcCCCCcH
Q psy14904 85 KYPISPYTSSNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDN---ENSADLAEKLGLPIILVIDLKIGCI 160 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~---~~~~~l~~~~~~~vllV~~~~~~~~ 160 (233)
..+.+|+.++.++... ...+...+.++. .++|++||||++|+++|.... .+.+++|+.+++|+++|++...+++
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~~~--~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g~i 364 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFVKN--SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKSGI 364 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHHHh--cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCChH
Confidence 6677777776543332 333333333332 368999999999999985432 5889999999999999999999987
Q ss_pred HHHHHH----HHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904 161 NNALLS----LEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP 213 (233)
Q Consensus 161 ~~~~~~----~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP 213 (233)
+++... .+.+++.++++.|+|+|++. +. .+.+..+.+.+..|+|++|++|
T Consensus 365 ~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~-~~--~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 365 EGAFVESMAYYSLLKKMGVKVEGIILNKVY-NM--EIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEECCC-cH--HHHHHHHHHHHhcCCCEEEecc
Confidence 776554 35666789999999999998 42 2445555444558999999944
No 21
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.89 E-value=3.6e-22 Score=159.89 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=107.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCcc-chHH-HHHHHHhC-CCcccccceee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWF-NEDV-NLLNKYSN-SLYEFTKLINP 81 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~-~~d~-~~~~~~~~-~~~~~~~~~~~ 81 (233)
++|+|+| ||||||||+|.|||.+|+++|+||+++| .+++... ...+.. .... ..+..... ......+.+..
T Consensus 1 ~~iav~g-KGGvGKTt~~~nLA~~la~~G~rvLliD---~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T cd02117 1 RQIAIYG-KGGIGKSTTSQNLSAALAEMGKKVLQVG---CDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFE 76 (212)
T ss_pred CEEEEEC-CCcCcHHHHHHHHHHHHHHCCCcEEEEe---CCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEe
Confidence 4699997 9999999999999999999999999998 3333210 000000 0011 11110000 00000000100
Q ss_pred e---eecCCCChhhhh-hhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCC
Q psy14904 82 Y---LFKYPISPYTSS-NLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLK 156 (233)
Q Consensus 82 ~---~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~ 156 (233)
. ..-.|.+..... ...... .....+.+.++.+.++||||||||++.+... .+ ...++......+++|++++
T Consensus 77 ~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~yD~ilID~~g~~~~~---~~-~~~l~~~~ad~vliv~~p~ 152 (212)
T cd02117 77 GFGGVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCG---GF-AMPIREGKADEIYIVTSGE 152 (212)
T ss_pred CCCCcEEEeCCCCCCCcccCCcchhhHHHHHHhccccccCCCEEEEecCCCceec---cc-ccccccccCcEEEEEeccc
Confidence 0 000011111100 000000 0111223356667789999999997654210 11 0111111123688888888
Q ss_pred CCcHHHH---HHHHHHHHhC-CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCC
Q psy14904 157 IGCINNA---LLSLEAINSR-GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYL 215 (233)
Q Consensus 157 ~~~~~~~---~~~~~~l~~~-~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~ 215 (233)
..++..+ ...++.+++. +.++.|+|+||++ ++ .+.+..+.+++.++.++++.||++
T Consensus 153 ~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~-~~--~~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 153 FMALYAANNICKGIRKYAKSGGVRLGGLICNSRN-TD--RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCC-Cc--cHHHHHHHHHHHcCCCEEEecCCC
Confidence 7665444 4444444433 7788999999998 54 344567788888899999999985
No 22
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.88 E-value=2.1e-22 Score=165.79 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=121.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC--CCCCCccch-HHHHHHHHhCCCcccc-------
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN--NKNKIWFNE-DVNLLNKYSNSLYEFT------- 76 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~--~~~~~l~~~-d~~~~~~~~~~~~~~~------- 76 (233)
|+|+|+|+||||||||+|.|||.+|+++|+||+++| .+++.. +...++... ...+.....+. ....
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD---~D~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 77 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLID---ADIGLRNLDLLLGLENRIVYTLVDVVEGE-CRLQQALIKDK 77 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEE---CCCCCCCeeEEeCCCCcCCCCHHHHhcCc-CcHHHHhhcCC
Confidence 689999999999999999999999999999999998 333210 000011100 00001111110 0000
Q ss_pred --cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904 77 --KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID 154 (233)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~ 154 (233)
+++. .+. .+... .......+.+.+.++.+++.||+|||||||++..+. .. .... .+.+++|+.
T Consensus 78 ~~~~l~--~l~--~~~~~----~~~~~~~~~l~~~l~~l~~~~D~viiD~p~~~~~~~-----~~-~l~~-aD~viiv~~ 142 (261)
T TIGR01968 78 RLKNLY--LLP--ASQTR----DKDAVTPEQMKKLVNELKEEFDYVIIDCPAGIESGF-----RN-AVAP-ADEAIVVTT 142 (261)
T ss_pred CCCCeE--EEe--CCCch----hhhhCCHHHHHHHHHHHHHhCCEEEEeCCCCcCHHH-----HH-HHHh-CCeEEEEcC
Confidence 1111 111 11100 111234567888889899999999999998875321 11 1222 236899999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhh--hhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFA--NENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~--~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
++..++..+...++.+++.+....++|+|+++ +..... ....+.+++.++.|+++.||++..+.
T Consensus 143 ~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~~~~~ 208 (261)
T TIGR01968 143 PEVSAVRDADRVIGLLEAKGIEKIHLIVNRLR-PEMVKKGDMLSVDDVLEILSIPLIGVIPEDEAII 208 (261)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCceEEEEeCcC-chhcccccccCHHHHHHHhCCceeEEccCCHHHH
Confidence 99888888888888877666656899999997 532111 12356677778999999999988653
No 23
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.88 E-value=7.5e-22 Score=153.54 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=109.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP 87 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (233)
+|+|+|+|||+||||+|.|||.+|+++|++|+++| .+++.. .+ + ..++... ..+..
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD---~D~~~~----~~---~-----~~~~~~~-----~~~~~---- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLID---ADLGLR----NL---D-----LILGLEN-----RVVYT---- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEe---CCCCCC----Cc---h-----hhccccc-----cCCcc----
Confidence 58999999999999999999999999999999998 444321 10 0 0111110 00000
Q ss_pred CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHH
Q psy14904 88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSL 167 (233)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~ 167 (233)
+.+.+. + |+|||||||++... ...... ....+++|+.++..++..+...+
T Consensus 57 ------------------~~~~~~----~-d~viiD~p~~~~~~------~~~~l~-~ad~viiv~~~~~~s~~~~~~~~ 106 (179)
T cd02036 57 ------------------LHDVLA----G-DYILIDSPAGIERG------FITAIA-PADEALLVTTPEISSLRDADRVK 106 (179)
T ss_pred ------------------hhhccc----C-CEEEEECCCCCcHH------HHHHHH-hCCcEEEEeCCCcchHHHHHHHH
Confidence 011111 1 99999999876421 111222 23478999999988888888888
Q ss_pred HHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 168 EAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 168 ~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
+.++..+.+..|+|+|+++ ++.....+..+.+++.++.++++.||+++.+.
T Consensus 107 ~~~~~~~~~~~~iv~N~~~-~~~~~~~~~~~~~~~~~~~~v~~~Ip~~~~~~ 157 (179)
T cd02036 107 GLLEALGIKVVGVIVNRVR-PDMVEGGDMVEDIEEILGVPLLGVIPEDPAVI 157 (179)
T ss_pred HHHHHcCCceEEEEEeCCc-ccccchhhHHHHHHHHhCCCEEEEecCCHHHH
Confidence 8888778889999999998 65444444567788888999999999998664
No 24
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.88 E-value=5.5e-22 Score=164.72 Aligned_cols=203 Identities=13% Similarity=0.077 Sum_probs=114.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCc-cchH-HHHHHHHhCCCcccccceee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIW-FNED-VNLLNKYSNSLYEFTKLINP 81 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l-~~~d-~~~~~~~~~~~~~~~~~~~~ 81 (233)
||+|+|+ +||||||||+++|||.+|+++|+||+++| .+++... ...+. .... .+.+........+..+.+.+
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD---~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~ 76 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVG---CDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQP 76 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEe---cccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEe
Confidence 4789999 89999999999999999999999999998 3333211 00010 0011 11111000000000011111
Q ss_pred e---eecCCCChhhhh-hhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCC
Q psy14904 82 Y---LFKYPISPYTSS-NLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLK 156 (233)
Q Consensus 82 ~---~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~ 156 (233)
. ..-.|.+..... ...++. .....+.+.++.+.++||||||||++++... .......+.+ ...+++|+.++
T Consensus 77 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~yD~vlID~~~~~~~~--~~~~~~al~a--ad~vlip~~p~ 152 (273)
T PRK13232 77 GFGDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCG--GFAMPIREGK--AKEIYIVASGE 152 (273)
T ss_pred CCCCeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccccccCCEEEEecCCCeeEC--CEeccccccc--cceEEEecCch
Confidence 0 000111100000 000111 1123477788888889999999998665311 0010000111 13689999998
Q ss_pred CCcHHHHHHHHHHH---HhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 157 IGCINNALLSLEAI---NSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 157 ~~~~~~~~~~~~~l---~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
..++..+...++.+ ++.+.++.|+|.|+.+ .. ...+..+.+++.++.++++.||++..+.
T Consensus 153 ~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~-~~--~~~~~~e~l~~~~~~~vl~~Ip~~~~v~ 215 (273)
T PRK13232 153 LMAIYAANNICKGLAKFAKGGARLGGIICNSRN-VD--GERELLEAFAKKLGSQLIHFVPRDNIVQ 215 (273)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC-CC--ccHHHHHHHHHHhCCCeEEECCCCHHHH
Confidence 77776544444444 4568889999999875 22 2345678888889999999999987654
No 25
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.87 E-value=1.1e-20 Score=156.88 Aligned_cols=199 Identities=13% Similarity=0.068 Sum_probs=108.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCC-CccchHH-HHHHHHhCCCccc------
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNK-IWFNEDV-NLLNKYSNSLYEF------ 75 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~-~l~~~d~-~~~~~~~~~~~~~------ 75 (233)
||+|+|+ .||||||||+|+|||.+|+++|+||+++| .+++... ... +...... +.+.. .+...+.
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID---~Dpq~~~t~~l~~~~~~~~~~~~l~~-~~~~~~~~~i~~~ 75 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVG---CDPKADSTRLLLGGLAQKTVLDTLRE-EGEDVELEDIRKE 75 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEe---cCCcccccccccCCCCCccHHHHHHh-cCCCCCHHHHhhc
Confidence 5789999 59999999999999999999999999998 3333211 000 0011111 11110 0000000
Q ss_pred -ccceeeeeecCCCChhhh-hhhcCCCCCHH-HHHHHHHHh--hcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEE
Q psy14904 76 -TKLINPYLFKYPISPYTS-SNLENRIINTS-HIINCYNYL--SNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPII 150 (233)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~~~~~l--~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vl 150 (233)
.+++... |.+..+. ....+...... .+.+.++.+ .++||||||||++++.. ..+ .+.++......++
T Consensus 76 ~~~~l~~i----p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~---~~l-~~~~a~~aad~vl 147 (274)
T PRK13235 76 GYGGTRCT----ESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVC---GGF-AMPIRDGKAEEIY 147 (274)
T ss_pred CCCCCEEE----eCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCcc---CCc-ccccccccccEEE
Confidence 0111111 1110000 00111111111 233444333 36899999999655421 111 1111100112588
Q ss_pred EEEcCCCCcHHHH---HHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 151 LVIDLKIGCINNA---LLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 151 lV~~~~~~~~~~~---~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
+++.++..++..+ ...++.++ +.++++.|+|+|+.. . ...++..+.+++.++.++++.||++..+..
T Consensus 148 Ip~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~-~--~~~~e~~~~l~~~~~~~ll~~Ip~~~~v~~ 218 (274)
T PRK13235 148 IVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRK-V--DNEREMIEELARKIGTQMIHFVPRDNFVQR 218 (274)
T ss_pred EEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC-C--CchHHHHHHHHHHcCCceEEeCCCCHHHHH
Confidence 8888887666544 44444443 467888999999754 2 123566778888889899999999886653
No 26
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.87 E-value=2.8e-20 Score=148.06 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=107.2
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccc-------
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFT------- 76 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~------- 76 (233)
..+|+|+|+|.|||+||||++.|||.+|+++|+||+++|...+++..... .+....... +..+.......+
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~-~~~~~~~~~-l~~~l~~~~~l~~~i~~~~ 92 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGT-FKSQNKITG-LTNFLSGTTDLSDAICDTN 92 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHH-hCCCCCCCC-HHHHhcCCCCHHHhcccCC
Confidence 34899999999999999999999999999999999999933221110000 000000000 111111000000
Q ss_pred -cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904 77 -KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL 155 (233)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~ 155 (233)
+++... ...+..+..... ...+.+.+.++++++.||+|||||||... ...+.+.....+.+++|+.+
T Consensus 93 ~~~l~~l-~~g~~~~~~~~~-----l~~~~l~~~l~~l~~~yD~ViiD~pp~~~------~~~~~~~~~~~D~vilV~~~ 160 (204)
T TIGR01007 93 IENLFVI-TSGPVPPNPTEL-----LQSSNFKTLIETLRKYFDYIIIDTPPIGT------VTDAAIIARACDASILVTDA 160 (204)
T ss_pred CCCEEEE-eCCCCCCCHHHH-----hCcHHHHHHHHHHHhcCCEEEEeCCCccc------cchHHHHHHhCCeEEEEEEC
Confidence 111111 111111111111 12356888889999999999999996321 12233343344589999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 156 KIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+..+.+++...++.+++.+.+++|+|+|+++
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~ 191 (204)
T TIGR01007 161 GEIKKRDVQKAKEQLEQTGSNFLGVVLNKVD 191 (204)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEEeCcc
Confidence 9999999999999999999999999999998
No 27
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.87 E-value=1.6e-20 Score=154.56 Aligned_cols=198 Identities=13% Similarity=0.117 Sum_probs=126.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhC--CCccc----ccc
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSN--SLYEF----TKL 78 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~~~----~~~ 78 (233)
..++|+|+|.|||+||||+|.|||.++++.|+||+++|.+..++..... .+..+... ......| +.+.. ...
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~-l~~~~~~g-~~~~~~g~~~~~~~~~~~~~~ 133 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRM-LGLENLPG-LTELLAGEALEPVIQHDGIKV 133 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHH-hCCCCCCC-cccccCCCccccceecCccce
Confidence 4679999999999999999999999999999999999955444432100 00000000 0000001 11000 011
Q ss_pred eeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC
Q psy14904 79 INPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI 157 (233)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~ 157 (233)
+. +.+..+ .+..+.+ ......+.+.+.+++.+ |||||||+||+... ..+.+++.....+++|++++.
T Consensus 134 ls-i~~~~~-~p~~~r~----~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~------~d~~i~~~~~~g~viVt~p~~ 201 (265)
T COG0489 134 LS-ILPLGP-VPVIPRG----LLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGD------ADATVLQRIPDGVVIVTTPGK 201 (265)
T ss_pred EE-EEecCC-CCCCChH----hhhhHHHHHHHHHHhccCCCEEEEeCCCCchH------HHHHHHhccCCeEEEEeCCcc
Confidence 11 111111 1111111 12356788899988877 99999999988643 345666665557999999999
Q ss_pred CcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhh-hhhHHHHHhhcCCCceEecCCCCCC
Q psy14904 158 GCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFA-NENYIELTKYLNVTPLGRIPYLYNL 218 (233)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~-~~~~~~l~~~~~~pvlg~IP~~~~l 218 (233)
.+...+...++.+++.+.+++|+|.|+.. ...... ....+...+.++ +++|.+|.+...
T Consensus 202 ~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~-~~~~~~~~g~~~~~~~~~~-~~~g~~p~~~~~ 261 (265)
T COG0489 202 TALEDVKKAIDMLEKAGIPVLGVVENMSY-FICPRCGEGGGEKYAERYG-PYLGSIPLDPSA 261 (265)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEecCcc-CcccccCCCchhhHHHHhc-cccccCCCChhh
Confidence 99898999999999999999999999776 211111 123444444556 888999887654
No 28
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.86 E-value=2.7e-20 Score=154.27 Aligned_cols=195 Identities=12% Similarity=0.081 Sum_probs=113.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCccch-HHHHHHHHhCCCccc------
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNE-DVNLLNKYSNSLYEF------ 75 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~-d~~~~~~~~~~~~~~------ 75 (233)
|+|+|+|+|+||||||||+|+|||.+|+++|++|+++| .+++... ...+.... ...+.....+. ...
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD---~D~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID---FDIGLRNLDLIMGCERRVVYDFVNVIQGD-ATLNQALIK 76 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE---CCCCCCChhhhhCCCcccccCHHHHhcCC-CcHHHhccc
Confidence 46899999999999999999999999999999999999 3332110 00011000 00111100110 000
Q ss_pred ---ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhc-CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904 76 ---TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL 151 (233)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll 151 (233)
.+++.. + |...... ......+.+.+.++.++. .||||||||||++... ... .... ...+++
T Consensus 77 ~~~~~~~~~--l--p~~~~~~----~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~-----~~~-~l~~-ad~viv 141 (270)
T PRK10818 77 DKRTENLYI--L--PASQTRD----KDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG-----ALM-ALYF-ADEAII 141 (270)
T ss_pred cCCcCCEEE--e--cCCCCcc----hhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHH-----HHH-HHHh-CCeEEE
Confidence 011111 1 1111110 111233456777777764 8999999999887531 112 2222 236888
Q ss_pred EEcCCCCcHHHHHHHHHHHHh-------CCCcE-EEEEEcccCCCchhhh--hhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 152 VIDLKIGCINNALLSLEAINS-------RGLKL-IGWVANHTQIVDTLFA--NENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 152 V~~~~~~~~~~~~~~~~~l~~-------~~~~i-~GiVlN~~~~~~~~~~--~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
|++++..++..+...++.++. .+.++ .++|+|+++ ++.... ....+.+++.+|.++++.||++..+.
T Consensus 142 v~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~v~ 218 (270)
T PRK10818 142 TTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN-PGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL 218 (270)
T ss_pred EcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccC-HhhhhhcccccHHHHHHHhCCcEEEEecCCHHHH
Confidence 899887777665555555431 11222 589999998 543211 11345666677999999999998655
No 29
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.86 E-value=7.7e-21 Score=165.42 Aligned_cols=204 Identities=11% Similarity=0.086 Sum_probs=116.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCccc-h---HHHHHHHHh--C-CCcccc
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWFN-E---DVNLLNKYS--N-SLYEFT 76 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~~-~---d~~~~~~~~--~-~~~~~~ 76 (233)
++++|+|+|+||||||||+|+|||.+|+++|+||+++| .+++..- ..-|+.+ . ....+.... + ...++.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlID---lDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~ 196 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVD---LDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLR 196 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEc---CCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHH
Confidence 57899999999999999999999999999999999998 3333210 0001100 0 000011110 0 001110
Q ss_pred cceee----eeecCCCChhhhh-hhc---------CCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHH
Q psy14904 77 KLINP----YLFKYPISPYTSS-NLE---------NRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADL 141 (233)
Q Consensus 77 ~~~~~----~~~~~~~~~~~~~-~~~---------~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l 141 (233)
+.+.+ -..-.|....+.. +.. ... ....+|.+.++++.++||||||||||++.. ++.+.+
T Consensus 197 ~~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~yD~IiIDtpP~l~~-----~t~~al 271 (405)
T PRK13869 197 DVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVADDYDVVVIDCPPQLGF-----LTLSGL 271 (405)
T ss_pred HheeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhhccCCEEEEECCCchhH-----HHHHHH
Confidence 11111 0111233332211 000 000 112468889999999999999999988742 233333
Q ss_pred HHHhCCCEEEEEcCCCCcHHH---HHH----HHHHHHh----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-
Q psy14904 142 AEKLGLPIILVIDLKIGCINN---ALL----SLEAINS----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL- 209 (233)
Q Consensus 142 ~~~~~~~vllV~~~~~~~~~~---~~~----~~~~l~~----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl- 209 (233)
.++ .-+|+++.++.-++.. ++. .++.+++ .+..++|+|+|+++ ++...+.+..+.+++.++-+++
T Consensus 272 ~aA--d~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~-~~~~~~~~~~~~l~~~~~~~vl~ 348 (405)
T PRK13869 272 CAA--TSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYE-PQDAPQTKVAALLRNMFEDHVLT 348 (405)
T ss_pred HHc--CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeEC-CCCcHHHHHHHHHHHHhhhhhcc
Confidence 332 2467777766544433 332 1223332 23457899999998 6665667788888888887777
Q ss_pred EecCCCCCCC
Q psy14904 210 GRIPYLYNLN 219 (233)
Q Consensus 210 g~IP~~~~l~ 219 (233)
..||++..+.
T Consensus 349 ~~I~~s~ai~ 358 (405)
T PRK13869 349 NPMVKSAAVS 358 (405)
T ss_pred CcCcchHHHH
Confidence 4577776544
No 30
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.86 E-value=2.8e-21 Score=158.08 Aligned_cols=197 Identities=16% Similarity=0.139 Sum_probs=119.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHH-HHHHHHcCCeeeEEeeeecCcccCC--CCCCccchHHHHHHHHhCCCccccccee-
Q psy14904 5 NFLHYFITGTNTNIGKTIISCAL-LSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNEDVNLLNKYSNSLYEFTKLIN- 80 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~L-a~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~- 80 (233)
++++|+|+|.|||+||||+|+|| +..++.+|++|+++|. +..... ..-++.+.-.. +.....-..++.+.+.
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDa---D~g~~nL~~~~g~~~~~~~-l~dvL~~~~~~~Di~~~ 76 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDA---DLGLGNLSLLLGVESKPTT-LHDVLAGEASIEDIIYE 76 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEec---CCCCCcHHHHhCCCCCccc-HHHHHhCCCCHhHeeee
Confidence 46899999999999999999999 5555556778799993 222110 00011110000 2222111111101111
Q ss_pred -e--eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC
Q psy14904 81 -P--YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI 157 (233)
Q Consensus 81 -~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~ 157 (233)
+ -.+-.|.+.... +....+.+++...++++.+.||||||||++|+..+. ....... ..+++|+.++.
T Consensus 77 ~~~~gl~vipg~~~~~---~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl~~~~------~~~~~~s-d~~viVt~pe~ 146 (262)
T COG0455 77 TPQDGLYVLPGGSGLE---DLAKLDPEDLEDVIKELEELYDYILIDTGAGLSRDT------LSFILSS-DELVIVTTPEP 146 (262)
T ss_pred cCcCCEEEeeCCCChH---HHhhcCHHHHHHHHHHHHhcCCEEEEeCCCCccHHH------HHHHHhc-CcEEEEeCCCc
Confidence 0 001112221111 113456788888899999999999999999986422 1222222 47899999999
Q ss_pred CcHHHHHHHHHHHHhCCCcEEE--EEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904 158 GCINNALLSLEAINSRGLKLIG--WVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLY 216 (233)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~i~G--iVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~ 216 (233)
.++.++..+++.+++.+....+ +|+||++ +..+..+......+.....+.+..||+++
T Consensus 147 ~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~-~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 206 (262)
T COG0455 147 TSITDAYKTIKILSKLGLDLLGRRVVLNRVR-STKEGVDVAALLIQVVKQVPVLQVIPFDP 206 (262)
T ss_pred chHHHHHHHHHHHHHcCCccccceEEEEecc-cccchhHHHHHHHHHHHhCCceeEeccCh
Confidence 9999999999999999999988 9999997 32221111222222222445778888888
No 31
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.86 E-value=5.3e-21 Score=158.95 Aligned_cols=204 Identities=10% Similarity=0.026 Sum_probs=110.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEeeeecCcccCCC--CCCc-cchH-HHHHHHHhCCCcccccce
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMKPIASGAYLNNK--NKIW-FNED-VNLLNKYSNSLYEFTKLI 79 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~dp~~~~~~~~~~--~~~l-~~~d-~~~~~~~~~~~~~~~~~~ 79 (233)
|+++|+|+ +||||||||+|.|||.+|++ +|+||+++| .+++.... ..+. .... .+.+.......... +.+
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD---~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~-~~~ 75 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHG---CDPKADSTRLILGGKPQTTMMDTLRELGEEKVTP-DKV 75 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEec---cCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCH-HHH
Confidence 46899999 79999999999999999997 699999998 33332110 0000 0000 11111000000000 000
Q ss_pred e----eeeecCCCChhhhh-hhcCCCC-CHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904 80 N----PYLFKYPISPYTSS-NLENRII-NTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI 153 (233)
Q Consensus 80 ~----~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~ 153 (233)
. +...-.|....+.. ...+... ...++.+.++.+.++||||||||++.+.. ..+. +.+.......+++++
T Consensus 76 ~~~~~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~yD~iliD~~~~~~~---~al~-~~~~~~aad~viIp~ 151 (275)
T PRK13233 76 IKTGFKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYTDDLDFVFFDVLGDVVC---GGFA-MPIRDGKAQEVYIVA 151 (275)
T ss_pred eeeCCCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCccCCCCEEEEecCCceee---cccc-ccchhccCceEEEec
Confidence 0 00000111111110 0001110 01125667777888999999999543321 1111 000000112588888
Q ss_pred cCCCCcHHHHHHHHHHH----HhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 154 DLKIGCINNALLSLEAI----NSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~l----~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
.++..++..+...++.+ ++.+++++|+|+|+.. .. ...+..+.+++.++.++++.||+++.+..
T Consensus 152 ~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~-~~--~~~~~~e~l~~~~~~~~l~~Ip~~~~v~~ 219 (275)
T PRK13233 152 SGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN-VD--GELELLEEFTDAIGTQMIHFVPRDNIVQK 219 (275)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC-CC--cHHHHHHHHHHHcCCceeeecCcchHHHH
Confidence 88866655443333222 4678999999999764 21 23456788888889999999999987653
No 32
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.86 E-value=2.6e-20 Score=152.25 Aligned_cols=199 Identities=11% Similarity=0.040 Sum_probs=111.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC-CCCCCccch-HHHHHHHHhCCCccc-------c
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN-NKNKIWFNE-DVNLLNKYSNSLYEF-------T 76 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~-~~~~~l~~~-d~~~~~~~~~~~~~~-------~ 76 (233)
||+|+|+|+|||+||||+|.|||.+|+++|+||+++| .+++.. ...-+.... ...+.....+ ...+ .
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD---~D~q~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 76 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAID---LDPQNLLRLHFGMDWSVRDGWARALLN-GEPWAAAAYRSS 76 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEe---CCCcchHHHHhCCCCccCCcHHHHHhc-CCChHHhHhhcC
Confidence 6899999999999999999999999999999999999 333211 000000000 0000000000 0000 0
Q ss_pred cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904 77 KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL 155 (233)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~ 155 (233)
.++. ....+......... .......++++.++.++.. ||+|||||||++.. + ...... ....+++++.+
T Consensus 77 ~~l~--~ip~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~-~-----~~~~l~-~ad~vii~~~~ 146 (246)
T TIGR03371 77 DGVL--FLPFGDLSADEREA-YQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSP-I-----TRQALA-AADLVLVVVNA 146 (246)
T ss_pred CCeE--EecCCCCcHHHHHH-HhhcCHHHHHHHHHhcccCCCCEEEEECCCCchH-H-----HHHHHH-hCCeEEEEeCC
Confidence 1111 11100000000000 0011235677778887654 69999999987542 1 112222 22468888888
Q ss_pred CCCcHHHHHHHH-HHHHhCC-CcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904 156 KIGCINNALLSL-EAINSRG-LKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-GRIPYLYNLN 219 (233)
Q Consensus 156 ~~~~~~~~~~~~-~~l~~~~-~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~ 219 (233)
+..++..+...+ +.++..+ ....++|+|+++ ++...+++..+.+++.++.+++ +.||++..+.
T Consensus 147 ~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ 212 (246)
T TIGR03371 147 DAACYATLHQQALALFAGSGPRIGPHFLINQFD-PARQLSRDVRAVLRQTLGSRLLPFVIHRDEAVS 212 (246)
T ss_pred CHHHHHHHHHHHHHHhhcccccccceEEeeccC-cchhhHHHHHHHHHHHhcccccCCcccchhhHH
Confidence 866655544222 2333121 223789999998 6554556667778888888755 6788877654
No 33
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.86 E-value=1.5e-20 Score=146.59 Aligned_cols=174 Identities=14% Similarity=0.123 Sum_probs=102.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee-ecC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL-FKY 86 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (233)
.|+|+|.|||+||||+|+|||.+| +||+++| .+++... + ...++.+... ... .. ...
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD---~D~~~~~----~--------~~~~~~~~~~--~~~-~~~~~~ 58 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLAD---CDVDAPN----L--------HLFLKPEIEE--EED-FIVGGK 58 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEE---CCCCCCc----h--------hhhcCCCccc--ccc-ceecCC
Confidence 389999999999999999999999 8999999 4333211 0 1112221100 000 00 000
Q ss_pred -CCChhhhhhhcCC-CCCHHHHHHHHHHh--hcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHH
Q psy14904 87 -PISPYTSSNLENR-IINTSHIINCYNYL--SNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINN 162 (233)
Q Consensus 87 -~~~~~~~~~~~~~-~~~~~~l~~~~~~l--~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~ 162 (233)
+..........+. ....+.+.+.+..+ .+.||||||||||+.... ....... ...+++|+.++..++..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~------~~~~l~~-aD~vliv~~~~~~~~~~ 131 (179)
T cd03110 59 KAVIDPELCISCGLCGKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCP------VIASLTG-ADAALLVTEPTPSGLHD 131 (179)
T ss_pred ceEEchhhhccccchHHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHH------HHHHHHc-CCEEEEEecCCcccHHH
Confidence 0000000000000 00012222222221 378999999999886421 1222222 23688999998888888
Q ss_pred HHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904 163 ALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP 213 (233)
Q Consensus 163 ~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP 213 (233)
+...++.+++.+.+ .++|+||++ ++....++..+.++ .+|+|++|.||
T Consensus 132 ~~~~~~~l~~~~~~-~~vV~N~~~-~~~~~~~~~~~~~~-~~~~~vl~~ip 179 (179)
T cd03110 132 LERAVELVRHFGIP-VGVVINKYD-LNDEIAEEIEDYCE-EEGIPILGKIP 179 (179)
T ss_pred HHHHHHHHHHcCCC-EEEEEeCCC-CCcchHHHHHHHHH-HcCCCeEEeCC
Confidence 88888888877877 589999998 54433344445555 46999999998
No 34
>PHA02518 ParA-like protein; Provisional
Probab=99.86 E-value=6.9e-21 Score=152.03 Aligned_cols=169 Identities=13% Similarity=0.077 Sum_probs=105.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
++|+|+|.||||||||+|.|||.+|+++|++|+++| .+++.. ...|...... .. +. +
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD---~D~q~~---------~~~~~~~~~~------~~--~~-i-- 57 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVD---LDPQGS---------STDWAEAREE------GE--PL-I-- 57 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEe---CCCCCC---------hHHHHHhccc------CC--CC-C--
Confidence 589999999999999999999999999999999999 555431 1122221100 00 00 0
Q ss_pred CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS 166 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~ 166 (233)
+..+ ....+.+.+.++.+.||+|||||||+... . ....... ..-+|+++.++..++..+...
T Consensus 58 ~~~~-----------~~~~~~~~l~~~~~~~d~viiD~p~~~~~-~-----~~~~l~~-aD~viip~~ps~~~~~~~~~~ 119 (211)
T PHA02518 58 PVVR-----------MGKSIRADLPKVASGYDYVVVDGAPQDSE-L-----ARAALRI-ADMVLIPVQPSPFDIWAAPDL 119 (211)
T ss_pred chhh-----------ccHHHHHHHHHHhccCCEEEEeCCCCccH-H-----HHHHHHH-CCEEEEEeCCChhhHHHHHHH
Confidence 0000 01345667777888999999999988532 1 1122222 236888888876655544333
Q ss_pred HHHHH-----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEe-cCCCCCC
Q psy14904 167 LEAIN-----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGR-IPYLYNL 218 (233)
Q Consensus 167 ~~~l~-----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~-IP~~~~l 218 (233)
.+.++ +.+.+..++|.|+++ ++.....+..+.+++ .+.|++.. +|++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~iv~n~~~-~~~~~~~~~~~~l~~-~~~~~~~~~i~~~~~~ 175 (211)
T PHA02518 120 VELIKARQEVTDGLPKFAFIISRAI-KNTQLYREARKALAG-YGLPILRNGTTQRVAY 175 (211)
T ss_pred HHHHHHHHhhCCCCceEEEEEeccC-CcchHHHHHHHHHHH-cCchhhhchhhhHHHH
Confidence 33332 346778899999987 544444555666654 48888865 4444433
No 35
>KOG3022|consensus
Probab=99.86 E-value=3.4e-21 Score=154.35 Aligned_cols=203 Identities=12% Similarity=0.062 Sum_probs=127.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCc-ccccce---ee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLY-EFTKLI---NP 81 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~---~~ 81 (233)
.++|+|+|.||||||||+|.|||.+|++.|.+|+++|-+.+|+.... ..|+..+. .++...|... ....++ .-
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~-m~g~e~~~--~~~~~~g~~Pv~~~~~l~~mS~ 123 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPR-MMGLEGEV--VHQSDNGWIPVVVNKNLKLMSM 123 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchh-hcCCCCce--eeecCCCceeeeecCCeEEEEe
Confidence 46899999999999999999999999999999999996655554210 01111000 0110011000 000111 10
Q ss_pred eeecCC-CChhhhhhhcCCC-CCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC
Q psy14904 82 YLFKYP-ISPYTSSNLENRI-INTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG 158 (233)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~~-~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~ 158 (233)
..+..+ ..+-. .+. .....+++.+.... .+.||+|||||||.+.. .++....+... ...++|++++.-
T Consensus 124 gfLl~~~~~~vI-----wRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDe---hls~~~~~~~~-~gAviVTTPQ~v 194 (300)
T KOG3022|consen 124 GFLLKPRDDSVI-----WRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDE---HLSLVQFLRES-DGAVIVTTPQEV 194 (300)
T ss_pred eeecCCCCccce-----eechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChh---hhheeeccccc-CceEEEeCchhh
Confidence 011110 00000 111 12356777776654 46899999999998652 33344444321 247889999988
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEEcccC--CCch----hhh-hhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 159 CINNALLSLEAINSRGLKLIGWVANHTQ--IVDT----LFA-NENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~--~~~~----~~~-~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
++.++.+.+...++.+++++|+|-||.. ++.- ..+ ..-.+.+.+.+|+|++|.||.++.+..
T Consensus 195 Al~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~ 263 (300)
T KOG3022|consen 195 ALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAE 263 (300)
T ss_pred hhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHH
Confidence 8889999999999999999999999976 2321 111 122467778899999999999987653
No 36
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.86 E-value=2.3e-20 Score=154.71 Aligned_cols=194 Identities=15% Similarity=0.103 Sum_probs=104.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCcc---chH-HHHHHHHh--CCCcccc--
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWF---NED-VNLLNKYS--NSLYEFT-- 76 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~---~~d-~~~~~~~~--~~~~~~~-- 76 (233)
|+++|+|+ +||||||||+|.|||.+|+++|+||+++| .+++.... ..+. ... .+.+.... .......
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD---~Dpq~~~t-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 75 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIG---CDPKHDST-FTLTGKLVPTVIDILEEVDFHSEELRPEDF 75 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe---ccCCcchh-hhhcCCCCCcHHHHHHhccccccCCCHHHh
Confidence 46899999 59999999999999999999999999998 33332100 0010 000 01111000 0000010
Q ss_pred -----cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHH--hhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCE
Q psy14904 77 -----KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNY--LSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPI 149 (233)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~v 149 (233)
++++.. |.+..+.. ............+.+++ +.++||||||||++++.... + .+.+.. . ..+
T Consensus 76 i~~~~~~l~~i----p~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~---~-~~~l~~-A-D~v 144 (270)
T PRK13185 76 VYEGYNGVDCV----EAGGPPAG-TGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG---F-AAPLQY-A-DYA 144 (270)
T ss_pred eeeCCCCcEEE----ECCCCCCC-CCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc---c-cchhhh-C-cEE
Confidence 111111 11111100 00000001111122222 45689999999976653211 1 111111 1 257
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 150 ILVIDLKIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 150 llV~~~~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
|+++.++..++..+...++.++ +.++++.|+|+|+++ .. ...+.+.+.++.++++.||++..+..
T Consensus 145 iip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~-~~-----~~~~~~~~~~g~~vl~~Ip~~~~i~~ 213 (270)
T PRK13185 145 LIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA-GT-----DLIDKFNEAVGLKVLAHVPDLDAIRR 213 (270)
T ss_pred EEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC-hH-----HHHHHHHHHcCCCEEEECCCCcccCh
Confidence 8888887766655444444332 567888999999987 31 23445555679999999999987664
No 37
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.85 E-value=1.8e-20 Score=155.17 Aligned_cols=203 Identities=14% Similarity=0.077 Sum_probs=108.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-chH-HHHHHHHhCCCcccccceee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-NED-VNLLNKYSNSLYEFTKLINP 81 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~~d-~~~~~~~~~~~~~~~~~~~~ 81 (233)
||+|+|++ ||||||||+|.|||.+|+++|+||+++| .+++.... ..+.. ... ...+...........+.+..
T Consensus 1 m~~iav~~-KGGvGKTT~~~nLA~~La~~G~kVlliD---~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 76 (270)
T cd02040 1 MRQIAIYG-KGGIGKSTTTQNLSAALAEMGKKVMIVG---CDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFE 76 (270)
T ss_pred CcEEEEEe-CCcCCHHHHHHHHHHHHHhCCCeEEEEE---cCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheee
Confidence 68899995 9999999999999999999999999998 33332110 00000 000 01111100000001000100
Q ss_pred ---eeecCCCChhhhh-hhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCC
Q psy14904 82 ---YLFKYPISPYTSS-NLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLK 156 (233)
Q Consensus 82 ---~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~ 156 (233)
...-.|.+..+.. ...... .....+.+.++.+.++||||||||++++... .+. ..++......+++++.++
T Consensus 77 ~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~yD~viID~~g~~~~~---~~~-~~~~~~aaD~vlip~~p~ 152 (270)
T cd02040 77 GFGGIKCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVIYDVLGDVVCG---GFA-MPIREGKAQEIYIVTSGE 152 (270)
T ss_pred cCCCeEEEeCCCCCCCCCCcCcchhhHHHHHHhcCccccCCCEEEEecccCcccC---Ccc-cccccccccEEEEEecCc
Confidence 0000011111100 000000 0111233445556678999999997654210 111 001100123688888888
Q ss_pred CCcHHHHHHH---HHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 157 IGCINNALLS---LEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 157 ~~~~~~~~~~---~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
..++..+... ++.+. +.+.++.|+|.|+.+ . ....+..+.+++.++.++++.||++..+.
T Consensus 153 ~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~-~--~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~ 216 (270)
T cd02040 153 MMALYAANNICKGILKYAKSGGVRLGGLICNSRN-T--DREDELIDAFAKRLGTQMIHFVPRDNVVQ 216 (270)
T ss_pred hHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC-C--hhHHHHHHHHHHHcCCCeEeecCCcHHHH
Confidence 7666544333 33332 346889999999865 2 23345677787788999999999998654
No 38
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.85 E-value=1.1e-19 Score=151.01 Aligned_cols=167 Identities=11% Similarity=0.119 Sum_probs=106.6
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCccc-------
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEF------- 75 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~------- 75 (233)
.+..++|+|+|.|||+||||++.|||.+|++.|+||+++|.....+..... -++.+ ...+.....|. ...
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~-~~~~~-~~gl~~~l~~~-~~~~~i~~~~ 176 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRN-FKLSE-QRGLSDILAGR-SDLEVITHIP 176 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHh-cCCCC-CCCHHHHhCCC-CCHHHeeecC
Confidence 456789999999999999999999999999999999999943222211000 00000 00000111111 000
Q ss_pred -ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904 76 -TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID 154 (233)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~ 154 (233)
..++.-.... ...++.... ...+++.+.++++++.||||||||||... ...+.+.....+.+++|+.
T Consensus 177 ~~~~l~~lp~g-~~~~~~~~~-----~~~~~~~~~l~~l~~~yD~ViiD~pp~~~------~~d~~~~~~~~d~vilV~~ 244 (274)
T TIGR03029 177 ALENLSVLPAG-AIPPNPQEL-----LARPAFTDLLNKVMGDYDVVIVDTPSAEH------SSDAQIVATRARGTLIVSR 244 (274)
T ss_pred CCCCEEEEeCc-CCCCCHHHH-----hCcHHHHHHHHHHHhcCCEEEEeCCCccc------ccHHHHHHHhCCeEEEEEE
Confidence 0111111111 001111110 12357888899999999999999997642 1233334444457999999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy14904 155 LKIGCINNALLSLEAINSRGLKLIGWVANH 184 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~ 184 (233)
++..+..++...++.+++.+.+++|+|+|+
T Consensus 245 ~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 245 VNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999999999999999999999999999996
No 39
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.84 E-value=9.8e-20 Score=158.18 Aligned_cols=204 Identities=10% Similarity=0.084 Sum_probs=115.6
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC-CCCccc------hH-H-HHHHHHhCCCcc
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK-NKIWFN------ED-V-NLLNKYSNSLYE 74 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~-~~~l~~------~d-~-~~~~~~~~~~~~ 74 (233)
+++++|+|+|.||||||||+|+|||.+|+++|+||+++| .+++..-. .-++.+ .. . .++....+ ..+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID---~DpQ~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAID---LDPQASLSALFGYQPEFDVGENETLYGAIRYDDE-RRP 177 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEe---cCCCCCHHHHcCCCcccccccCccHHHHHhcccc-ccC
Confidence 357899999999999999999999999999999999998 33332100 001100 00 0 01110000 001
Q ss_pred ccccee----eeeecCCCChhhhh-------hh-cCC---CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchH
Q psy14904 75 FTKLIN----PYLFKYPISPYTSS-------NL-ENR---IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSA 139 (233)
Q Consensus 75 ~~~~~~----~~~~~~~~~~~~~~-------~~-~~~---~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~ 139 (233)
..+.+. +...-.|....+.. .. ... ......+.+.++++.++||+|||||||++.. .+..
T Consensus 178 l~~~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~IiiD~pp~~~~-----~~~~ 252 (387)
T TIGR03453 178 LSEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVEDDYDVVVIDCPPQLGF-----LTLS 252 (387)
T ss_pred HHhhcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCCEEEEeCCccHhH-----HHHH
Confidence 100110 00111122222110 00 000 0112468888899999999999999988642 1223
Q ss_pred HHHHHhCCCEEEEEcCCCCcHHHH---HH----HHHHHHh----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCc
Q psy14904 140 DLAEKLGLPIILVIDLKIGCINNA---LL----SLEAINS----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTP 208 (233)
Q Consensus 140 ~l~~~~~~~vllV~~~~~~~~~~~---~~----~~~~l~~----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pv 208 (233)
.+..+ .-+|+++.++..++..+ .. ..+.++. .+..+.|+|+|+++ ++...+.+..+.+++.++.++
T Consensus 253 al~aa--d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~-~~~~~~~~~~~~l~~~~~~~v 329 (387)
T TIGR03453 253 ALCAA--TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYE-PNDGPQAQMVAFLRSLFGDHV 329 (387)
T ss_pred HHHHc--CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeEC-CCCccHHHHHHHHHHHhcccc
Confidence 33322 35677777654333322 11 1222332 34567899999998 655556677788888888878
Q ss_pred e-EecCCCCCCC
Q psy14904 209 L-GRIPYLYNLN 219 (233)
Q Consensus 209 l-g~IP~~~~l~ 219 (233)
+ ..||++..+.
T Consensus 330 l~~~I~~~~~~~ 341 (387)
T TIGR03453 330 LTNPMLKSTAIS 341 (387)
T ss_pred ccccccccHHHH
Confidence 7 4688876554
No 40
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.84 E-value=5.4e-20 Score=152.29 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=103.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCc---cchH-HHHHHHH---hCCCccccccee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIW---FNED-VNLLNKY---SNSLYEFTKLIN 80 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l---~~~d-~~~~~~~---~~~~~~~~~~~~ 80 (233)
+|+|+| ||||||||+|+|||.+|+++|+||+++| .+++.... ..+ .... .+.+... .+ ..+..+.+.
T Consensus 2 ~i~v~g-KGGvGKTT~a~nLA~~la~~G~rvlliD---~Dpq~~~~-~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~i~ 75 (267)
T cd02032 2 VLAVYG-KGGIGKSTTSSNLSVALAKRGKKVLQIG---CDPKHDST-FTLTGFLIPTVIDILEEVDFHYE-ELWPEDVIY 75 (267)
T ss_pred EEEEec-CCCCCHHHHHHHHHHHHHHCCCcEEEEe---cCCCCCcc-eeccCCCCCCHHHHHHhcccccc-CCChhheEE
Confidence 488886 9999999999999999999999999998 33332100 011 0001 1111100 01 001101111
Q ss_pred ee---eecCCCChhhhhhhcCCCCCHHHHHHHHHH--hhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904 81 PY---LFKYPISPYTSSNLENRIINTSHIINCYNY--LSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL 155 (233)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~ 155 (233)
.. ..-.|.+..+.. .+........-...+++ +.++||||||||+|++..+. . .+. +... +.+++++.+
T Consensus 76 ~~~~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~---~-~~a-l~~a-D~vlip~~p 148 (267)
T cd02032 76 EGYGGVDCVEAGGPPAG-AGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG---F-AAP-LNYA-DYALIVTDN 148 (267)
T ss_pred ECCCCcEEEEcCCCCCC-ccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc---c-hhh-hhhc-CEEEEEecC
Confidence 00 000011110100 00000000111112222 45689999999987654321 1 111 1111 257888888
Q ss_pred CCCcHHHHHHHHHHH----HhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904 156 KIGCINNALLSLEAI----NSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN 221 (233)
Q Consensus 156 ~~~~~~~~~~~~~~l----~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~ 221 (233)
+..++..+...++.+ ++.++++.|+|+||++ ++ ...+.+.+.++.++++.||++..+...
T Consensus 149 ~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~-~~-----~~i~~~~~~~~~~vl~~Ip~~~~v~~A 212 (267)
T cd02032 149 DFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTD-KT-----DLIDKFVEAVGMPVLAVLPLIEDIRRS 212 (267)
T ss_pred CcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCC-HH-----HHHHHHHHhCCCCEEEEecCCccccHH
Confidence 866655544444333 2467888999999998 42 233445556799999999999887643
No 41
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.84 E-value=5.8e-20 Score=148.53 Aligned_cols=172 Identities=10% Similarity=0.011 Sum_probs=98.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
|++|+|+|+||||||||++.|||.+|+++|++|+++| .|++.. -..|...... +...+....
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD---~DpQ~s---------~~~w~~~~~~------~~~~~~~~~ 62 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFE---ADENRP---------LTRWKENALR------SNTWDPACE 62 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEe---CCCCCC---------HHHHHHhhcc------ccCCCccce
Confidence 5799999999999999999999999999999999999 555531 1223322111 000000000
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL 164 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~ 164 (233)
.. .......+.+.++... ++||||||||||+... . ... ..... .-+|+++.++..++..+.
T Consensus 63 ~~-----------~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~-~----~~~-al~~a-D~vliP~~ps~~d~~~~~ 124 (231)
T PRK13849 63 VY-----------AADELPLLEAAYEDAELQGFDYALADTHGGSSE-L----NNT-IIASS-NLLLIPTMLTPLDIDEAL 124 (231)
T ss_pred ec-----------CCCHHHHHHHHHHHHhhCCCCEEEEeCCCCccH-H----HHH-HHHHC-CEEEEeccCcHHHHHHHH
Confidence 00 0011234666666664 6799999999987642 1 111 11222 246667776655554444
Q ss_pred HHHHHHH------hCCCcEEEEEEcccCCCchh-hhhhhHHHHHhhcCCCceE-ecCCCCC
Q psy14904 165 LSLEAIN------SRGLKLIGWVANHTQIVDTL-FANENYIELTKYLNVTPLG-RIPYLYN 217 (233)
Q Consensus 165 ~~~~~l~------~~~~~i~GiVlN~~~~~~~~-~~~~~~~~l~~~~~~pvlg-~IP~~~~ 217 (233)
..++.+. +.+++. .+|+|+++ ++.. ...+..+++.+ ++|++. .||.+..
T Consensus 125 ~~~~~v~~~~~~~~~~l~~-~iv~~~~~-~~~~~~~~~~~~~~~~--~~~vl~t~I~~r~~ 181 (231)
T PRK13849 125 STYRYVIELLLSENLAIPT-AILRQRVP-VGRLTTSQRAMSDMLE--SLPVVDSPMHERDA 181 (231)
T ss_pred HHHHHHHHHHHHhCCCCCe-EEEEEecc-cccCCHHHHHHHHHHh--cCCCCCccccchHH
Confidence 4433322 456664 49999996 4321 22222333332 566773 4666553
No 42
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.84 E-value=2.9e-20 Score=155.78 Aligned_cols=198 Identities=14% Similarity=0.036 Sum_probs=109.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-chH-HHHHHHHhCC-Ccccc---
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-NED-VNLLNKYSNS-LYEFT--- 76 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~~d-~~~~~~~~~~-~~~~~--- 76 (233)
+|++|+|. .||||||||++.|||.+|+++|+||+++| .+++.... ..+.. ... .+.+...... ..+..
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD---~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 78 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVG---CDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVM 78 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEe---cccccccccccccCCCCCcHHHHHHhcCCcccccHHHHh
Confidence 47899997 99999999999999999999999999998 33332110 00000 011 1112110000 00110
Q ss_pred ----cceeeeeecCCCChhhhhhhcCCCCCHHHHH-HHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCE
Q psy14904 77 ----KLINPYLFKYPISPYTSSNLENRIINTSHII-NCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPI 149 (233)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~v 149 (233)
.++.- . |.+..... . +.......+. +.++++. ++||||||||++++.. ..+. +.++......+
T Consensus 79 ~~~~~gl~l--i--pa~~~~~~-~-~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~---nal~-~~~~~~aAD~v 148 (295)
T PRK13234 79 KIGYKGIKC--V--ESGGPEPG-V-GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVC---GGFA-MPIRENKAQEI 148 (295)
T ss_pred eecCCCeEE--E--ECCCCCCC-C-CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceE---CCCc-cccccccCceE
Confidence 11111 1 11100000 0 0000012233 3555543 7899999999654321 1111 11110112368
Q ss_pred EEEEcCCCCcHHHHHHHH---HHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 150 ILVIDLKIGCINNALLSL---EAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 150 llV~~~~~~~~~~~~~~~---~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
|+++.++..++..+...+ +..+ +.++++.|+|+|+.+ . ....+..+.+++.++.++++.||++..+.
T Consensus 149 IIPv~pe~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~r-t--~~~~~~~e~l~e~~g~~ll~~Ip~d~~V~ 219 (295)
T PRK13234 149 YIVMSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQ-T--DRELELAEALAARLGSKLIHFVPRDNIVQ 219 (295)
T ss_pred EEecCccHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC-C--chHHHHHHHHHHHhCCceEEECCCchHHH
Confidence 889998877665544433 3332 456889999999765 2 23345677888888999999999988655
No 43
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.84 E-value=4.6e-20 Score=154.68 Aligned_cols=201 Identities=15% Similarity=0.085 Sum_probs=110.6
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccc-hHH-HHHHHH--hCCCcccc
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFN-EDV-NLLNKY--SNSLYEFT 76 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~-~d~-~~~~~~--~~~~~~~~ 76 (233)
|-+++|++|++ +.||||||||+++|||.+|+++|+||+++|.+.++... +...+... ... +++... .+ +.++.
T Consensus 1 ~~~~~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~-~~l~~~~~~~tl~d~~~~~~~~~-~~~l~ 77 (296)
T PRK13236 1 MTDENIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADST-RLMLHSKAQTTVLHLAAERGAVE-DLELH 77 (296)
T ss_pred CCCcCceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCcc-chhccCCCCCCHHHHHHhcCCcc-CCCHH
Confidence 66788999999 55999999999999999999999999999832222111 00011110 011 111110 01 00110
Q ss_pred -------cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-----cCCCeEEEeccCcccCccCCCCchHHHHHH
Q psy14904 77 -------KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS-----NLTDVIILEGIGGFSVPFHDNENSADLAEK 144 (233)
Q Consensus 77 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~~D~vlID~~~g~~~p~~~~~~~~~l~~~ 144 (233)
.++.-. |.+..... . +. ...+.+. .++.+. ++||||+|||++.+..+.. .....+.+
T Consensus 78 ~~i~~~~~gv~ll----pa~~~~~~-~-~~-~~~~~~~-~l~~~~~~~~~~~yD~vliD~~~~~~~~~~--~~~~~l~a- 146 (296)
T PRK13236 78 EVMLTGFRGVKCV----ESGGPEPG-V-GC-AGRGIIT-AINFLEENGAYQDLDFVSYDVLGDVVCGGF--AMPIREGK- 146 (296)
T ss_pred HhheeCCCCeEEE----ECCCCCCC-C-CC-cceeehh-hhHHHHhcCccccCCEEEEeccccceeccc--cccchhcc-
Confidence 111111 11100000 0 00 0011111 233333 5899999999754322111 10010111
Q ss_pred hCCCEEEEEcCCCCcHHHHHHH---H-HHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 145 LGLPIILVIDLKIGCINNALLS---L-EAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 145 ~~~~vllV~~~~~~~~~~~~~~---~-~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
...+++|+.++..++..+... + +..++.++++.|+|+||.+ .. ......+.+++.++.+++++||++..+.
T Consensus 147 -AD~vIIvttpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~-~~--~~~~ile~l~~~~g~~vl~~Ip~~~~v~ 221 (296)
T PRK13236 147 -AQEIYIVTSGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRN-VD--REIELIETLAKRLNTQMIHFVPRDNIVQ 221 (296)
T ss_pred -CCEEEEecCcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCC-Cc--chHHHHHHHHHHhCccceeeCCCChHHH
Confidence 136899999988777554322 2 2334678999999999865 21 1124567888888999999999996544
No 44
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.83 E-value=1.3e-19 Score=151.63 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=106.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccc-hHH-HHHHHH--hCCCccccccee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFN-EDV-NLLNKY--SNSLYEFTKLIN 80 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~-~d~-~~~~~~--~~~~~~~~~~~~ 80 (233)
++|+|+ .||||||||+|+|||.+|+++|+||+++| .+++.... ..+... ... +.+... .+....+.+.+.
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID---~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~ 76 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLG---CDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCF 76 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEE---ecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHhee
Confidence 578999 69999999999999999999999999998 33332110 000000 011 111100 000001100111
Q ss_pred eeeec-CCCChhhhhhhcCCCC-------CHHHHHHHHHHh---hcCCCeEEEeccCcccCc-cCCCCchHHHHHHhCCC
Q psy14904 81 PYLFK-YPISPYTSSNLENRII-------NTSHIINCYNYL---SNLTDVIILEGIGGFSVP-FHDNENSADLAEKLGLP 148 (233)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~-------~~~~l~~~~~~l---~~~~D~vlID~~~g~~~p-~~~~~~~~~l~~~~~~~ 148 (233)
...+. .+.... ..+...... ......+.++.+ ..+||||||||++.+.++ .. ...+.. ....
T Consensus 77 ~~~~~~~~~~~~-~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~--~~~a~~---~Ad~ 150 (296)
T TIGR02016 77 KTTIMNGSGGVY-GMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFA--TPLARS---LAEE 150 (296)
T ss_pred eccccCcCCCcc-eeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccccc--cchhhh---hCCe
Confidence 10000 000000 000100000 000112444443 368999999997654211 11 111111 1236
Q ss_pred EEEEEcCCCCcH---HHHHHHHHHHHhC--CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 149 IILVIDLKIGCI---NNALLSLEAINSR--GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 149 vllV~~~~~~~~---~~~~~~~~~l~~~--~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
+++|++++..++ +++...++.+++. +++++|+|+||+. .. ...+.+.+.+++|+++.||+++.+..
T Consensus 151 viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~-~~-----~~~~~~~~~~~i~vLg~IP~d~~i~~ 221 (296)
T TIGR02016 151 VIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDD-GS-----GEAQAFAREVGIPVLAAIPADEELRR 221 (296)
T ss_pred EEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCC-Cc-----cHHHHHHHHcCCCeEEECCCCHHHHH
Confidence 888888876555 4455566666554 4789999999997 32 12344556689999999999998764
No 45
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.83 E-value=9.1e-20 Score=151.00 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=103.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCcc---chHH-HHHHHH--hCCCcccc-----
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWF---NEDV-NLLNKY--SNSLYEFT----- 76 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~---~~d~-~~~~~~--~~~~~~~~----- 76 (233)
+|+|. +||||||||+|+|||.+|+++|+||+++| .+++... ...+. .... +.+... ........
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD---~D~q~~~-~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~ 76 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIG---CDPKHDS-TFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYT 76 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEe---cCccccc-cceecCCCCCcHHHHHHhccccccCCCHHHeeEe
Confidence 47888 69999999999999999999999999998 3333210 00110 0111 111100 00000000
Q ss_pred --cceeeeeecCCCChhhh-hhhcCCCCCHHHHHHHHH--HhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904 77 --KLINPYLFKYPISPYTS-SNLENRIINTSHIINCYN--YLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL 151 (233)
Q Consensus 77 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll 151 (233)
++++-. |....+. .+.+.. ........++ .+.++||||||||++++..+.. ..+ +.. ...+++
T Consensus 77 ~~~~l~~i----~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~---~~~-l~a--AD~vli 144 (268)
T TIGR01281 77 GYGGVDCV----EAGGPPAGSGCGGY--VVGETVKLLKEHHILDDYDVILFDVLGDVVCGGF---ATP-LQY--ADYALV 144 (268)
T ss_pred CCCCeEEE----ecCCCCCCCcccce--ehhhhHHHhhhccccccCCEEEEecCCccccCcc---ccc-hhh--cCEEEE
Confidence 111111 1111010 000000 0011112222 2456899999999876543211 111 111 125777
Q ss_pred EEcCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 152 VIDLKIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 152 V~~~~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
++.++..++..+...++.++ +.++++.|+|+||++ ++ +..+.+++.++.|+++.||++..+..
T Consensus 145 p~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~-~~-----~~~~~~~~~~~~~vl~~I~~~~~v~~ 211 (268)
T TIGR01281 145 VAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSD-AT-----DLIERFNERVGMPVLGVVPDLEVIRR 211 (268)
T ss_pred EecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCC-hH-----HHHHHHHHHcCCCEEEEcCCChHHHH
Confidence 88877666655444444332 457889999999998 43 34566666789999999999886553
No 46
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.83 E-value=7.5e-20 Score=152.79 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=105.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCccchHH-HHHHH--HhCCCccccccee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNEDV-NLLNK--YSNSLYEFTKLIN 80 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~d~-~~~~~--~~~~~~~~~~~~~ 80 (233)
|| |+|+| ||||||||+|.|||.+|+++|+||+++| .+++... ...+...... ..+.. ....+.+..+.+.
T Consensus 1 m~-ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID---~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~ 75 (290)
T CHL00072 1 MK-LAVYG-KGGIGKSTTSCNISIALARRGKKVLQIG---CDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIY 75 (290)
T ss_pred Ce-EEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEe---ccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEE
Confidence 45 88999 8999999999999999999999999998 3333211 0001111111 11110 0000000101111
Q ss_pred ee---eecCCCChhhh-hhhcCC-CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904 81 PY---LFKYPISPYTS-SNLENR-IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL 155 (233)
Q Consensus 81 ~~---~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~ 155 (233)
+. ..-.|....+. .+.+.. ......+.+.++++ ++||||||||++++..+ .+ .+.+.. ...+++++.+
T Consensus 76 ~~~~~l~lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~yD~IiIDt~~~l~~~---a~-~aal~~--AD~viIp~~p 148 (290)
T CHL00072 76 KGYGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNAF-YEYDIILFDVLGDVVCG---GF-AAPLNY--ADYCIIITDN 148 (290)
T ss_pred eCCCCeEEEeCCCCCCccchhhcccHHHHHHHHHhhcc-ccCCEEEEecCCcceec---hh-hhhhhc--CCEEEEEecC
Confidence 00 00011111110 000000 00112233334332 47999999998765321 11 111111 1357888888
Q ss_pred CCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 156 KIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 156 ~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
+..++..+...++.++ +.++++.|+|+||++ .+ ...+.+.+.++.++++.||++..+..
T Consensus 149 ~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~-~~-----~~~~~~~~~~~~~vl~~Ip~~~~v~~ 211 (290)
T CHL00072 149 GFDALFAANRIAASVREKARTHPLRLAGLVGNRTS-KR-----DLIDKYVEACPMPVLEVLPLIEDIRV 211 (290)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC-ch-----hHHHHHHHHcCCceEEECCCChHHHH
Confidence 8766655444443332 356788999999997 42 23444566789999999998886653
No 47
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.83 E-value=5.5e-20 Score=144.87 Aligned_cols=183 Identities=21% Similarity=0.231 Sum_probs=105.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHH---HHhCCCcccccceeeeeec
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN---KYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~ 85 (233)
|+|+|+|||+||||+|++||.+|+++|++|+++| ++++.. ...++. ....... ..... ...
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD---~D~~~~---------~~~~~~~~~~~~~~~~---~~~~~-~~~ 64 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLID---LDPQAP---------NLSILFGVYDILREGL---ENANA-ILK 64 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE---ESTTSH---------HHHHHTTCHHHHTTSS---HGHHC-HHE
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccc---cCcccc---------cHHHHhcchhhccccc---eehhh-hhh
Confidence 7899999999999999999999999999999999 555431 111111 0000000 00000 000
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhhc-CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL 164 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~ 164 (233)
. ........ .........+++.++.+.+ .||+||||||+++..+ ...+.....-+++++.++..++..+.
T Consensus 65 ~-~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~-------~~~~l~~ad~viv~~~~~~~~i~~~~ 135 (195)
T PF01656_consen 65 N-FESQDIYQ-GEEYLDPELLREILESLIKSDYDYIIIDTPPGLSDP-------VRNALAAADYVIVPIEPDPSSIEGAE 135 (195)
T ss_dssp S-CCHHHHHH-HCHCHHHHHHHHHHHHHHHTTSSEEEEEECSSSSHH-------HHHHHHTSSEEEEEEESSHHHHHHHH
T ss_pred c-cchhhhhh-hhhhhHHHHHHHHHHHhhhccccceeecccccccHH-------HHHHHHhCceeeeecCCcHHHHHHHH
Confidence 0 00000000 0000223567888888654 4999999999887532 22222233468888888876777777
Q ss_pred HHHHHHHhCC--CcEEEEEEcccCCCc-hhhhhhhHHHHHhhcC-CCce-EecCCCCC
Q psy14904 165 LSLEAINSRG--LKLIGWVANHTQIVD-TLFANENYIELTKYLN-VTPL-GRIPYLYN 217 (233)
Q Consensus 165 ~~~~~l~~~~--~~i~GiVlN~~~~~~-~~~~~~~~~~l~~~~~-~pvl-g~IP~~~~ 217 (233)
..++.+++.+ .++.|+|+||++ ++ ....+...+..++... ..++ +.||++..
T Consensus 136 ~~~~~l~~~~~~~~~~~vv~N~v~-~~~~~~~~~~~~~~~~~~~~~~vl~~~Ip~~~~ 192 (195)
T PF01656_consen 136 RLIELLKRLGKKLKIIGVVINRVD-PGNESKLQEEIEEIERELYVPVVLPGVIPYSEA 192 (195)
T ss_dssp HHHHHHHHHTHTEEEEEEEEEEET-SCCHHHHHHHHHHHHHHCECCCBESEEEE--HH
T ss_pred HHHHHHHHhccccceEEEEEeeeC-CCccchHHHHHHHHHHHhCCCcCcCCcCCCCCC
Confidence 7777777555 568999999997 43 2223333333333333 3355 67988754
No 48
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.83 E-value=1.7e-19 Score=149.88 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=107.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-chH-HHHHHHHhCCCcccccceeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-NED-VNLLNKYSNSLYEFTKLINPY 82 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~~d-~~~~~~~~~~~~~~~~~~~~~ 82 (233)
++|+|.| ||||||||+|.|||.+|+++|+||+++| .+++.... ..+.. ... .+.+.....-..+..+.+...
T Consensus 1 ~~ia~~g-KGGVGKTT~a~nLA~~La~~G~~VlliD---~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~ 76 (275)
T TIGR01287 1 RQIAIYG-KGGIGKSTTTQNIAAALAEMGKKVMIVG---CDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEG 76 (275)
T ss_pred CeeEEeC-CCcCcHHHHHHHHHHHHHHCCCeEEEEe---CCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeC
Confidence 4789986 9999999999999999999999999998 33332110 00000 001 111111000000110001000
Q ss_pred ---eecCCCChhhh-hhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC
Q psy14904 83 ---LFKYPISPYTS-SNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI 157 (233)
Q Consensus 83 ---~~~~~~~~~~~-~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~ 157 (233)
..-.|...... ....+.. .....+.+.+..+.++||||||||++.+... .+. ..++......+++++.++.
T Consensus 77 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiIDt~~~~~~~---~~~-~~~~~~aAD~viip~~p~~ 152 (275)
T TIGR01287 77 FGGIRCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVFYDVLGDVVCG---GFA-MPIREGKAQEIYIVTSGEM 152 (275)
T ss_pred CCCEEEEeCCCCCccCCCccchhhhHHHHHHHhhhhhccCCEEEEeccCcceec---cee-eccccccccEEEEEecchH
Confidence 00001110000 0000000 0011234456667789999999997654210 110 0010011136888888887
Q ss_pred CcHHHHHHH---HHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 158 GCINNALLS---LEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 158 ~~~~~~~~~---~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
.++..+... ++.++ +.+.++.|+|.|+.+ . ....+..+.+++.++.++++.||++..+..
T Consensus 153 ~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~-~--~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~ 216 (275)
T TIGR01287 153 MALYAANNICKGILKYAKSGGVRLGGLICNSRN-V--DDEKELIDEFAKKLGTQLIHFVPRSNIVQK 216 (275)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC-C--chHHHHHHHHHHHhCCceEEECCCChHHHH
Confidence 666554333 33332 457788899988754 2 233455677777889999999999986653
No 49
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.83 E-value=6.9e-19 Score=141.60 Aligned_cols=195 Identities=12% Similarity=0.096 Sum_probs=115.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCcc-chHHHHHHHHhCCCccc-------c
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWF-NEDVNLLNKYSNSLYEF-------T 76 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~-~~d~~~~~~~~~~~~~~-------~ 76 (233)
||+|+|.|.||||||||+|+|||.+|++.|++|+++| .+++..- ..-++. +..-.|.+..... .++ .
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID---~dpqN~Lrlhfg~~~~~~~G~a~a~l~~-~~W~~~~~~~~ 76 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAID---LDPQNLLRLHFGLPLDDRDGWARALLDG-ADWQQAAYRYS 76 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEe---CCcHHHHHHhcCCCCcccccHHHHHhCC-CCHHHHhhccC
Confidence 7899999999999999999999999999999999999 4433210 000000 0011112211110 011 0
Q ss_pred cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904 77 KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID 154 (233)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~ 154 (233)
+.+...+|.. .+..-....+........+.+.+.++. ..||+||||+|+|.. |.. .-+....+-++.|+.
T Consensus 77 ~g~~~LPfG~-l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~-~~~------~~al~~aD~vL~V~~ 148 (243)
T PF06564_consen 77 DGVDFLPFGQ-LTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPS-PYT------RQALAAADLVLVVVN 148 (243)
T ss_pred CCCEEEcCCC-CCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCc-HHH------HHHHHhCCeEEEEeC
Confidence 2222223322 111111111112234567888888888 789999999998864 221 112222236888888
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
++..+.. ....+.+ ..+ ..+|+|+++ +.+...++....+++..+-.+-+.|.+|+.+.
T Consensus 149 ~Da~s~~--~L~q~~l-~~~---~~~liNq~~-~~s~l~~D~~~~~~~~l~~llp~~IHrDeAv~ 206 (243)
T PF06564_consen 149 PDAASHA--RLHQRAL-PAG---HRFLINQYD-PASQLQRDLLQVWRQSLGRLLPGVIHRDEAVA 206 (243)
T ss_pred CCHHHHH--HHHHhcc-cCC---cEEEEeccC-ccchHHHHHHHHHHHhhccccceeeecchHHH
Confidence 8854432 2222221 222 478999999 87777778888778776654446898888665
No 50
>PRK10037 cell division protein; Provisional
Probab=99.83 E-value=3.1e-19 Score=146.39 Aligned_cols=195 Identities=12% Similarity=0.039 Sum_probs=102.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCccc-hHHHHHHHHhCCCcccccceee--
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWFN-EDVNLLNKYSNSLYEFTKLINP-- 81 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~~-~d~~~~~~~~~~~~~~~~~~~~-- 81 (233)
|++|+|+|+||||||||+|.|||.+|+++|+||+++| .+++..- ...|+.. ....+.....+. .++.+.+..
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID---~D~q~~~s~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVID---ACPDNLLRLSFNVDFTHRQGWARALLDG-QDWRDAGLRYT 76 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEe---CChhhhHHHHhCCCccccchHHHHHhcC-CCchhhhcccc
Confidence 6799999999999999999999999999999999998 3333210 0001100 001111111111 011000000
Q ss_pred -eeecCCCChhhhhhhcCC---CCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904 82 -YLFKYPISPYTSSNLENR---IINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL 155 (233)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~ 155 (233)
...-.|.......+.+.. ......+.+.+++++ ++||||||||||++.. .....+ . ....+++++.+
T Consensus 77 ~~l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~-----~~~~al-~-aaD~vlvpv~~ 149 (250)
T PRK10037 77 SQLDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASP-----LTRQLL-S-LCDHSLAIVNV 149 (250)
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccH-----HHHHHH-H-hCCEEEEEcCc
Confidence 000011110000000000 001234778888887 8999999999988642 112222 2 22467888877
Q ss_pred CCCcHHHHHHHHHHHHhC-CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceE-ecCCCCCCCh
Q psy14904 156 KIGCINNALLSLEAINSR-GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLG-RIPYLYNLNI 220 (233)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~-~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg-~IP~~~~l~~ 220 (233)
+..+ .++..+.. +.+ ..+++|+++ +.....++..+.+.+. +.+++. .||++..+..
T Consensus 150 ~~~~------~i~~~~~~~~~~-~~i~~n~~~-~~~~~~~~~~~~~~~~-~~~~l~~~I~~~~~~~~ 207 (250)
T PRK10037 150 DANC------HIRLHQQALPAG-AHILINDLR-IGSQLQDDLYQLWLQS-QRRLLPMLIHRDEAMAE 207 (250)
T ss_pred CHHH------HHhhhccccCCC-eEEEEecCC-cccHHHHHHHHHHHHh-cccccCccccCchhHHH
Confidence 6322 22333221 223 567889987 5443334444444332 567774 5888876553
No 51
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.83 E-value=1.6e-19 Score=149.20 Aligned_cols=198 Identities=15% Similarity=0.083 Sum_probs=113.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccchHHHHHHHHhCC-Cccc-------
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFNEDVNLLNKYSNS-LYEF------- 75 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~~d~~~~~~~~~~-~~~~------- 75 (233)
||+|+|. .||||||||+|.|||.+|+++| ||+++| .+++.... ..+..... ......+. ....
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD---~Dpq~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 74 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIG---CDPKADTTRTLCGKRIPT--VLDTLKDNRKPELEDIIHEG 74 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEe---EccCcccchhhhcCCccH--HHHHHhhcCCCChhHhheeC
Confidence 6899999 5999999999999999999999 999998 33332100 00101011 01111110 0000
Q ss_pred ccceeeeeecCCCChhhhhhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904 76 TKLINPYLFKYPISPYTSSNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID 154 (233)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~ 154 (233)
.+++......... +.. ...+.. ....++.+.++++.++||||||||++++.. ..+... .+......+++++.
T Consensus 75 ~~~l~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~l~~~yD~ViIDt~~~~~~---~~~~~~-~~~~aaD~vlip~~ 147 (264)
T PRK13231 75 FNGILCVESGGPE-PGV--GCAGRGVIVAMNLLENLGVFDEDIDVVIYDVLGDVVC---GGFSVP-LREDYADEVYIVTS 147 (264)
T ss_pred CCCeEEEEcCCCC-CCC--CCcCceeeehhhhHHhhccccCCCCEEEEecCCCceE---cccccc-ccccccceeEEEec
Confidence 0111111110000 000 000111 111235667777888999999999765421 011100 00011236888889
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
++..++..+...++.++..+.++.|+|.|+++ .. ...+..+.+.+.++.++++.||++..+..
T Consensus 148 p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~-~~--~~~~~~~~l~~~~~~~vl~~I~~~~~v~~ 210 (264)
T PRK13231 148 GEYMSLYAANNIARGIKKLKGKLGGIICNCRG-ID--NEVEIVSEFASRIGSRIIGVIPRSNLVQE 210 (264)
T ss_pred CchhHHHHHHHHHHHHHHcCCcceEEEEcCCC-Cc--cHHHHHHHHHHHhCCCeEEeCCCCHHHHH
Confidence 88878877777777776655567888888775 22 23455677777789899999999876653
No 52
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.82 E-value=7.6e-19 Score=140.14 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=100.9
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCc-ccc-----
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLY-EFT----- 76 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~----- 76 (233)
+++++|+|+|.|||+||||++.|||.+|++ .|+||+++|...+++.... .-++... .. +..+..... .+.
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~-~~~~~~~-~~-l~~~l~~~~~~l~~~i~~ 109 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHR-TLGLEAE-PG-LSDCLLDPVLDLADVLVP 109 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhh-eeCCCCC-CC-HHHHHcCCCCCHHHHhcc
Confidence 468999999999999999999999999997 6999999993322111000 0011100 00 111110000 000
Q ss_pred ---cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCC--CeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904 77 ---KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLT--DVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL 151 (233)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll 151 (233)
+++. .. |.+....... .....+++.+.+++++++| ||||||||+++..+ ....++... +.+++
T Consensus 110 ~~~~~l~--vl--~~g~~~~~~~--~~~~~~~l~~~l~~l~~~y~~D~IiiD~pp~~~~~-----~~~~l~~~a-D~vii 177 (207)
T TIGR03018 110 TNIGRLS--LL--PAGRRHPNPT--ELLASQRMRSLLHELARRYPDRIIIIDTPPLLVFS-----EARALARLV-GQIVL 177 (207)
T ss_pred CCCCCEE--EE--eCCCCCCCHH--HHhCcHHHHHHHHHHHhhCCCCEEEEECCCCcchh-----HHHHHHHhC-CEEEE
Confidence 1111 11 1111100000 0012367888999999888 99999999876421 123333333 47999
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEc
Q psy14904 152 VIDLKIGCINNALLSLEAINSRGLKLIGWVAN 183 (233)
Q Consensus 152 V~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN 183 (233)
|+..+..+...+...++.++ +.+++|+|+|
T Consensus 178 V~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 178 VVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred EEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 99999988888888888887 6799999998
No 53
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.82 E-value=2e-19 Score=155.46 Aligned_cols=205 Identities=10% Similarity=-0.003 Sum_probs=113.4
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee-eecCcccCCCCCCccc-----hHHHHHHHHhCCCccccc
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP-IASGAYLNNKNKIWFN-----EDVNLLNKYSNSLYEFTK 77 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp-~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~~~ 77 (233)
+++++|+|+|+||||||||+|+|||.+|+++|+||+++|. +.++.-.. ..|+.+ .+........+.......
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~--~~g~~~~~~~~~~~tl~~~~~~~~~~~~~ 181 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASM--YHGYVPDLHIHADDTLLPFYLGERDNAEY 181 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCccc--ccCcCccccccccccHHHHHhCCCcchHh
Confidence 3578999999999999999999999999999999999982 22211100 001100 000001111111000000
Q ss_pred ceee----eeecCCCChhhhh---hh---cC-CC---CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHH
Q psy14904 78 LINP----YLFKYPISPYTSS---NL---EN-RI---INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAE 143 (233)
Q Consensus 78 ~~~~----~~~~~~~~~~~~~---~~---~~-~~---~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~ 143 (233)
.+.+ ...-.|....+.. .. .. .. .....+.+.++++.++||+|||||||++.. ++...+++
T Consensus 182 ~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~~~YD~IlID~pPslg~-----lt~nAL~A 256 (387)
T PHA02519 182 AIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVWDNYDIIVIDSAPNLGT-----GTINVVCA 256 (387)
T ss_pred heecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhhccCCEEEEECCCCccH-----HHHHHHHH
Confidence 1111 0111123322211 00 00 00 113468888899999999999999988742 23344444
Q ss_pred HhCCCEEEEEcCCCCcHHH---HHHHH----HHHHh--CCCcEEEEEEcccCCCch-hhhhhhHHHHHhhcCCCce-Eec
Q psy14904 144 KLGLPIILVIDLKIGCINN---ALLSL----EAINS--RGLKLIGWVANHTQIVDT-LFANENYIELTKYLNVTPL-GRI 212 (233)
Q Consensus 144 ~~~~~vllV~~~~~~~~~~---~~~~~----~~l~~--~~~~i~GiVlN~~~~~~~-~~~~~~~~~l~~~~~~pvl-g~I 212 (233)
+ ..+|+++.++..++.. +...+ +.++. .+.. +.+++|+++ ++. ...+...+.+++.+|-.++ ..|
T Consensus 257 A--d~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~-~~~~~~~~~i~~~l~~~~g~~vl~~~I 332 (387)
T PHA02519 257 A--DVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPV-VRLLLTKYS-LTVGNQSRWMEEQIRNTWGSMVLRQVV 332 (387)
T ss_pred h--CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCC-eEEEEeeEC-CCCchHHHHHHHHHHHHhccccccccC
Confidence 3 2467777766544332 22222 22221 1233 458999998 653 3444567889988888787 458
Q ss_pred CCCCCCC
Q psy14904 213 PYLYNLN 219 (233)
Q Consensus 213 P~~~~l~ 219 (233)
|....+.
T Consensus 333 ~~s~~i~ 339 (387)
T PHA02519 333 RVTDEVG 339 (387)
T ss_pred cCcchHh
Confidence 7765544
No 54
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.82 E-value=2.5e-19 Score=147.60 Aligned_cols=204 Identities=15% Similarity=0.103 Sum_probs=111.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEeeeecCcccCCC-CCCccch-HHHHHHHHhCCCcc--cccce
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMKPIASGAYLNNK-NKIWFNE-DVNLLNKYSNSLYE--FTKLI 79 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~dp~~~~~~~~~~-~~~l~~~-d~~~~~~~~~~~~~--~~~~~ 79 (233)
+|++|+|+|+||||||||+|.|||.+|+ ++|+||+++| .+++.... .-+.... +.....-..+.... .....
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliD---lDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLID---LDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYT 77 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEe---CCCcchhhHhcCCCcccchhHHHHHhcccccccchhcc
Confidence 5789999999999999999999999999 6679999998 44442110 0011101 00001111110000 00000
Q ss_pred --eeeeecCCCChhhh--hhhcC-CCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904 80 --NPYLFKYPISPYTS--SNLEN-RIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID 154 (233)
Q Consensus 80 --~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~ 154 (233)
.....-.|....++ .+.+. .......+++.++.+.++||||||||||++. ++ +...++++ .-+++.+.
T Consensus 78 ~~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~yD~iiID~pp~l~-~l----~~nal~as--d~vlIP~~ 150 (259)
T COG1192 78 VVIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYDYIIIDTPPSLG-VL----TLNALAAA--DHVLIPVQ 150 (259)
T ss_pred cCCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhccCCCEEEECCCCchh-HH----HHHHHHHc--CeeEEecC
Confidence 01111223222222 11111 1111234555555566799999999998873 22 23333332 24666666
Q ss_pred CCCCcH---HHHHHHHHHHHhC---CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904 155 LKIGCI---NNALLSLEAINSR---GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-GRIPYLYNLN 219 (233)
Q Consensus 155 ~~~~~~---~~~~~~~~~l~~~---~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~ 219 (233)
.+.-++ ..++..+..+++. .+.+.+++.|+++ ++.....+..+.+++.++.+++ ..||.+..+.
T Consensus 151 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 221 (259)
T COG1192 151 PEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFD-SRTKLADEVLQELKQLLGDPVLKTKIPRRVAYR 221 (259)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEc-CCcchHHHHHHHHHHHhccccccccCcccccHH
Confidence 664333 3344445444321 1477999999998 6555556677777777665655 4577776555
No 55
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.82 E-value=1.9e-18 Score=146.73 Aligned_cols=190 Identities=11% Similarity=0.083 Sum_probs=118.2
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCccc-----CCCCCCccchHHH---------HHHHHh
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYL-----NNKNKIWFNEDVN---------LLNKYS 69 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~-----~~~~~~l~~~d~~---------~~~~~~ 69 (233)
.++++|+|+|.|||+||||+|.|||.+|+++|++|+++|-..++... .+..+++.-.+.. .+....
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDAL 170 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhC
Confidence 35799999999999999999999999999999999999832211110 0000111100110 000000
Q ss_pred CCCcccccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCE
Q psy14904 70 NSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPI 149 (233)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~v 149 (233)
.. . +.+. .+..+.. . ......+.+.+.++.+++.|||||||||++... . ........ ..+
T Consensus 171 --~~-~-~~l~--vl~~~~~--~-----~~~~~~~~l~~~l~~l~~~~D~VIID~p~~~~~-~-----~~~~L~~A-D~v 230 (322)
T TIGR03815 171 --PR-R-GGLS--VLSWGRA--V-----GAALPPAAVRAVLDAARRGGDLVVVDLPRRLTP-A-----AETALESA-DLV 230 (322)
T ss_pred --CC-c-CCeE--EEecCCC--C-----cCCCCHHHHHHHHHHHHhcCCEEEEeCCCCCCH-H-----HHHHHHHC-CEE
Confidence 00 0 1111 1111100 0 112445678888999999999999999987532 1 22233333 368
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 150 ILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 150 llV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
++|+..+..++..+...++.++..+.+ +++|+|+.. +. ....+.+++.+|.|+++.||+++.+.
T Consensus 231 liV~~~~~~sl~~a~r~l~~l~~~~~~-~~lVv~~~~-~~----~~~~~~i~~~lg~~v~~~Ip~d~~v~ 294 (322)
T TIGR03815 231 LVVVPADVRAVAAAARVCPELGRRNPD-LRLVVRGPA-PA----GLDPEEIAESLGLPLLGEVRDQRGLA 294 (322)
T ss_pred EEEcCCcHHHHHHHHHHHHHHhhhCCC-eEEEEeCCC-CC----CCCHHHHHHHhCCCceeeCCCChhHH
Confidence 889988887777777777777655544 567788754 22 12346778888999999999988654
No 56
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.81 E-value=6.2e-19 Score=152.62 Aligned_cols=204 Identities=11% Similarity=0.020 Sum_probs=113.0
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee-eecCcccCCCCCCcc------chHHHHHHHHhCCCcccc
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP-IASGAYLNNKNKIWF------NEDVNLLNKYSNSLYEFT 76 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp-~~~~~~~~~~~~~l~------~~d~~~~~~~~~~~~~~~ 76 (233)
.+.++|+|+|.||||||||+|+|||.+|+++|+||+++|. +.++.-..- .|+. ..+. ......+...+..
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~--~g~~~~~~~~~~~~-l~~~~~~~~~~~~ 180 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMY--HGWVPDLHIHAEDT-LLPFYLGEKDDAT 180 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhh--cCcCcccccccccc-HHHHHhcCCCchh
Confidence 3578999999999999999999999999999999999982 222111000 0110 0011 1111111110000
Q ss_pred cceee----eeecCCCChhhhh---h---hc--CCC-C-CHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHH
Q psy14904 77 KLINP----YLFKYPISPYTSS---N---LE--NRI-I-NTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLA 142 (233)
Q Consensus 77 ~~~~~----~~~~~~~~~~~~~---~---~~--~~~-~-~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~ 142 (233)
+.+.+ ...-.|....+.. . .. +.. . ....+++.+++++++||||||||||++.. ++...++
T Consensus 181 ~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~~~YD~IiIDtpP~l~~-----~t~nal~ 255 (388)
T PRK13705 181 YAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLGI-----GTINVVC 255 (388)
T ss_pred hheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhhccCCEEEEECCCchhH-----HHHHHHH
Confidence 01110 0111222222211 0 00 100 1 13457788888989999999999988742 2333333
Q ss_pred HHhCCCEEEEEcCCCCcHHH---HHHHHHHHHh------CCCcEEEEEEcccCCCchh-hhhhhHHHHHhhcCCCceE-e
Q psy14904 143 EKLGLPIILVIDLKIGCINN---ALLSLEAINS------RGLKLIGWVANHTQIVDTL-FANENYIELTKYLNVTPLG-R 211 (233)
Q Consensus 143 ~~~~~~vllV~~~~~~~~~~---~~~~~~~l~~------~~~~i~GiVlN~~~~~~~~-~~~~~~~~l~~~~~~pvlg-~ 211 (233)
++ .-+|+++.++..++.. +...++.+.+ .+.+ +.+++|+++ ++.. ..+...+.+++.++-.+|. .
T Consensus 256 Aa--D~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~-~~~~~~~~~~~~~l~~~~~~~vl~~~ 331 (388)
T PRK13705 256 AA--DVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPD-VRILLTKYS-NSNGSQSPWMEEQIRDAWGSMVLKNV 331 (388)
T ss_pred Hc--CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCC-eEEEEEEec-CCCchHHHHHHHHHHHHhcccccccc
Confidence 32 2577777776544433 3333333322 1223 458999998 5532 2334667888888877884 5
Q ss_pred cCCCCCCC
Q psy14904 212 IPYLYNLN 219 (233)
Q Consensus 212 IP~~~~l~ 219 (233)
||+...+.
T Consensus 332 I~~s~~i~ 339 (388)
T PRK13705 332 VRETDEVG 339 (388)
T ss_pred CcccchHh
Confidence 88876555
No 57
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.81 E-value=6.4e-19 Score=148.55 Aligned_cols=203 Identities=14% Similarity=0.054 Sum_probs=111.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccc----hHHHHHHHHhCCCcccccce
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFN----EDVNLLNKYSNSLYEFTKLI 79 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~----~d~~~~~~~~~~~~~~~~~~ 79 (233)
++.++|+|++ |||+||||++.|||.+|+++|+||+++|....++.... ..+... .+........+......+.+
T Consensus 29 ~~~~ii~v~g-kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~-~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~ 106 (329)
T cd02033 29 KKTQIIAIYG-KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSL-LFGGKACPTIIETSAKKKLAGEEVQIGDVC 106 (329)
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccch-hccccCCCcccccccccccCcccceeeceE
Confidence 4578999996 89999999999999999999999999983322111000 000000 01000000000000000000
Q ss_pred ---eeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHh---hcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904 80 ---NPYLFKYPISPYTSSNLENRIINTSHIINCYNYL---SNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI 153 (233)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~ 153 (233)
..+....+..|..+....++. .....+.++++ ..+||||||||+++..++ ++ ...++......+++|+
T Consensus 107 ~~~~gv~~~~~g~p~~~~G~~~~~--~i~~~~~l~~l~~~~w~~DyVliD~~gdv~~g---gf-~l~i~~~~ad~VIVVt 180 (329)
T cd02033 107 FKRDGVFAMELGGPEVGRGCGGRG--IIHGFELLEKLGFHDWDFDYVLLDFLGDVVCG---GF-GLPIARDMAQKVIVVG 180 (329)
T ss_pred EEeCCEEEecCCCCeecccccchH--HHHHHHHHHHccCccccCCEEEEecCCcceec---cc-cchhhhcCCceEEEeC
Confidence 001111111222221110100 01112344433 347999999998765321 10 0112222334688888
Q ss_pred cCCCCcHH---HHHHHHHHHHhC--CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 154 DLKIGCIN---NALLSLEAINSR--GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 154 ~~~~~~~~---~~~~~~~~l~~~--~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
+++..++. .+...++.+++. +.++.|+|+||++ .. ...+.+.+.+++|++|.||+++.+..
T Consensus 181 ~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d-~~-----~~ie~~ae~lgi~vLg~IP~D~~V~~ 246 (329)
T cd02033 181 SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDD-GT-----GEAQAFAAHAGIPILAAIPADEELRR 246 (329)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcC-Cc-----chHHHHHHHhCCCEEEECCCCHHHHH
Confidence 88887764 456666777655 5778999999987 32 23566667789999999999987654
No 58
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.80 E-value=6.7e-19 Score=146.66 Aligned_cols=202 Identities=14% Similarity=0.124 Sum_probs=103.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC--CCCCCccchHH-HHHHHHhCC-Ccccccceee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN--NKNKIWFNEDV-NLLNKYSNS-LYEFTKLINP 81 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~--~~~~~l~~~d~-~~~~~~~~~-~~~~~~~~~~ 81 (233)
|++|+|+ +||||||||+|+|||.+|+++|+||+++| .|++.. ....+....+. +.+.. .+. ..+..+.+.+
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD---~Dpq~n~t~~l~~~~~~~l~d~~~~-~~~~~~~~~~~i~~ 75 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVG---CDPKADCTRNLVGEKIPTVLDVLRE-KGIDNLGLEDIIYE 75 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEe---eCCcccccccccCccCCCHHHHHHh-cCCCCCCHHHheee
Confidence 6899999 59999999999999999999999999998 333311 00001000111 11111 000 0011011111
Q ss_pred e---eecCCCChhhhh-hhcCCC-CCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904 82 Y---LFKYPISPYTSS-NLENRI-INTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL 155 (233)
Q Consensus 82 ~---~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~ 155 (233)
. ..-.|....... ...+.. .....+.+.+..+. .+||||||||++++... .+.. ..+......+++++.+
T Consensus 76 ~~~~l~lipa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~---~l~~-~~~~~aAD~vlIp~~p 151 (279)
T PRK13230 76 GFNGIYCVESGGPEPGYGCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCG---GFAM-PLQKGLADDVYIVTTC 151 (279)
T ss_pred CCCCcEEEECCCCCCCCCcCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccC---Cccc-cccccccceEEEeccc
Confidence 0 000011100000 000000 00011222222333 47999999997654210 1110 0000011368889998
Q ss_pred CCCcHHHHH---HHHHHHHh-CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 156 KIGCINNAL---LSLEAINS-RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 156 ~~~~~~~~~---~~~~~l~~-~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
+..++..+. ..++.+++ .+.++.|+|.|. + ... ...+..+.+++.++.++++.||++..+.
T Consensus 152 ~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~-r-~~~-~~~~~~e~l~~~~g~~vl~~Ip~~~~v~ 216 (279)
T PRK13230 152 DPMAIYAANNICKGIKRFAKRGKSALGGIIYNG-R-SVI-DAPDIVEEFAKKIGTNVIGKIPMSNIIT 216 (279)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCcceEEEEec-c-CCC-chhHHHHHHHHHhCCcEEEECCCChHHH
Confidence 876665544 34444433 477888888553 2 211 1235677788788999999999987654
No 59
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.80 E-value=6e-18 Score=157.38 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=109.5
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCccc-------
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEF------- 75 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~------- 75 (233)
.+..|+|+|||.++|+||||+|+|||.+|++.|+||+++|.....+.... ..++.+ +.. +..+......+
T Consensus 528 ~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~-~~~~~~-~~g-l~~~l~~~~~~~~~i~~~ 604 (726)
T PRK09841 528 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHN-LFTVSN-EHG-LSEYLAGKDELNKVIQHF 604 (726)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHH-HcCCCC-CCC-HHHHhCCCCCHHHheecc
Confidence 45678999999999999999999999999999999999993322111000 000000 000 01111000000
Q ss_pred -ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904 76 -TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID 154 (233)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~ 154 (233)
.+++.... ..+..++.. ++ +..+++.+.++++++.||+|||||||.+.. ..+.+++...+.+++|+.
T Consensus 605 ~~~~l~vl~-~g~~~~~p~-el----l~~~~~~~ll~~l~~~yD~IIIDtPP~~~~------~Da~~la~~ad~~llVvr 672 (726)
T PRK09841 605 GKGGFDVIT-RGQVPPNPS-EL----LMRDRMRQLLEWANDHYDLVIVDTPPMLAV------SDAAVVGRSVGTSLLVAR 672 (726)
T ss_pred CCCCEEEEe-CCCCCCCHH-HH----hCcHHHHHHHHHHHhcCCEEEEeCCCcccc------chHHHHHHhCCeEEEEEe
Confidence 01121111 111111111 11 234678899999999999999999976532 223343444457899999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.++..++...++.+++.+.+++|+|+|+++
T Consensus 673 ~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 673 FGLNTAKEVSLSMQRLEQAGVNIKGAILNGVI 704 (726)
T ss_pred CCCCCHHHHHHHHHHHHhCCCceEEEEEeCcc
Confidence 99988888999999999999999999999997
No 60
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.79 E-value=2.1e-18 Score=138.37 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEE
Q psy14904 104 SHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVA 182 (233)
Q Consensus 104 ~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVl 182 (233)
.++...+.+..+. .|++|||+|+|...|....+..+|+ +++|+.+...+++++.+.++.+++.+++ .++|+
T Consensus 150 ~~lV~~~kk~a~E~~~~~IIDsaaG~gCpVi~sl~~aD~-------ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iVi 221 (284)
T COG1149 150 GKLVTALKKHAKELADLLIIDSAAGTGCPVIASLKGADL-------AILVTEPTPFGLHDLKRALELVEHFGIP-TGIVI 221 (284)
T ss_pred chHHHHHHHhhhhhcceeEEecCCCCCChHHHhhccCCE-------EEEEecCCccchhHHHHHHHHHHHhCCc-eEEEE
Confidence 3555555554444 6999999999999887655555653 7999999998999999999999999999 88999
Q ss_pred cccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904 183 NHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN 221 (233)
Q Consensus 183 N~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~ 221 (233)
||++ +.. . +..+. .+..|+|+++.||++.++...
T Consensus 222 Nr~~-~g~--s-~ie~~-~~e~gi~il~~IPyd~~i~~~ 255 (284)
T COG1149 222 NRYN-LGD--S-EIEEY-CEEEGIPILGEIPYDKDIPEA 255 (284)
T ss_pred ecCC-CCc--h-HHHHH-HHHcCCCeeEECCcchhHHHH
Confidence 9996 532 1 23333 445699999999999877643
No 61
>PRK11519 tyrosine kinase; Provisional
Probab=99.78 E-value=4.7e-18 Score=157.92 Aligned_cols=167 Identities=14% Similarity=0.184 Sum_probs=110.5
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC-----CCCCCccchHHHHHHHHhCC-----C
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN-----NKNKIWFNEDVNLLNKYSNS-----L 72 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~-----~~~~~l~~~d~~~~~~~~~~-----~ 72 (233)
++..++|+|||.+||+||||+|.|||.+|++.|+||+++|-+...+... ....|+. | .+.....+ .
T Consensus 523 ~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~--~--~l~~~~~l~~~i~~ 598 (719)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLS--D--ILIGQGDITTAAKP 598 (719)
T ss_pred CCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHH--H--HhCCCCCHHHhecc
Confidence 4467899999999999999999999999999999999999322211100 0001211 1 11100000 0
Q ss_pred cccccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904 73 YEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV 152 (233)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV 152 (233)
... +++.-.. ..+..++... .+..+++.+.++++++.||+|||||||-+.. ..+.++..+.+.+++|
T Consensus 599 ~~~-~~l~~lp-~g~~~~~~~e-----ll~s~~~~~ll~~l~~~yD~ViiDtpP~~~v------~Da~~l~~~~d~~l~V 665 (719)
T PRK11519 599 TSI-ANFDLIP-RGQVPPNPSE-----LLMSERFAELVNWASKNYDLVLIDTPPILAV------TDAAIVGRHVGTTLMV 665 (719)
T ss_pred cCc-CCEEEEe-CCCCCCCHHH-----HhhHHHHHHHHHHHHhcCCEEEEeCCCcccc------hHHHHHHHHCCeEEEE
Confidence 000 1222111 1111122211 1235688999999999999999999976432 3344444555578999
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 153 IDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+.++......+..+++.+++.+.+++|+|+|+++
T Consensus 666 vr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 666 ARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred EeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCc
Confidence 9999988888888999999999999999999997
No 62
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.77 E-value=8.9e-18 Score=157.37 Aligned_cols=169 Identities=10% Similarity=-0.014 Sum_probs=106.0
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC-----CCCCCccchHHHH----HHHHhCCCcc
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN-----NKNKIWFNEDVNL----LNKYSNSLYE 74 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~-----~~~~~l~~~d~~~----~~~~~~~~~~ 74 (233)
++.++|+|+|.|||+||||+|.|||..|++.|+||+++|.+..++... ....|+. +... +..... ...
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~--~~l~~~~~~~~~i~-~~~ 620 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLL--DLLAGLRSLLLDLT-ASG 620 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChH--HHHcCCccHHHHhc-cCC
Confidence 356899999999999999999999999999999999999332211100 0001111 0000 000000 000
Q ss_pred cccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904 75 FTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID 154 (233)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~ 154 (233)
. +++.-... .+..+... +. ....++.+.++++++.||+|||||||.+.. .....++.. .+.+++|+.
T Consensus 621 ~-~~l~~l~~-g~~~~~~~-~l----l~~~~~~~~l~~l~~~yD~IiID~pp~~~~-----~d~~~l~~~-~D~vl~v~~ 687 (754)
T TIGR01005 621 A-ASLPMLDS-GLFPHGIT-EL----LASPAMFSLVIHARLYSDCVVVDVGTADPV-----RDMRAAARL-AIIMLLVTA 687 (754)
T ss_pred C-CCeeEecC-CCCCCCHH-HH----hccHHHHHHHHHHHhhCCEEEEcCCCcchh-----HHHHHhhhh-CCeEEEEEE
Confidence 0 12211111 11111111 11 123567888899999999999999977542 122233333 346889999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCc
Q psy14904 155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD 189 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~ 189 (233)
++..+...+...++.+++.+.+++|+|+|+++ ++
T Consensus 688 ~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~-~~ 721 (754)
T TIGR01005 688 YDRVVVECGRADAQGISRLNGEVTGVFLNMLD-PN 721 (754)
T ss_pred eCceeHHHHHHHHHHHHhcCCceEEEEecCCC-hh
Confidence 98888888888999998888999999999998 53
No 63
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.75 E-value=4e-18 Score=147.35 Aligned_cols=212 Identities=19% Similarity=0.198 Sum_probs=147.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHH-hCCCcccccceeeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY-SNSLYEFTKLINPYLF 84 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 84 (233)
|+.|++.|+..++|||+++++|++.|+++|++|.-||++-...+..-...|.--.-+.+++.. ++...+ -.++|+.+
T Consensus 1 ~~~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~--v~mNPvLL 78 (486)
T COG1492 1 MKAIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPS--VHMNPVLL 78 (486)
T ss_pred CCccEEEeccCCcchhhhhhhhhHHHHhcCCccCCCchhhcccccEECCCCcEEehhhhHHHHHcCCCCc--cccCCEEE
Confidence 357999999999999999999999999999999999977554442110011111233444443 455443 35677665
Q ss_pred cCCC--Chh----------hh-hh--hcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCc-c-CCCCchHHHHHHhCC
Q psy14904 85 KYPI--SPY----------TS-SN--LENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVP-F-HDNENSADLAEKLGL 147 (233)
Q Consensus 85 ~~~~--~~~----------~~-~~--~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p-~-~~~~~~~~l~~~~~~ 147 (233)
+... +.. .+ .+ .+........+.+.++++.+.||+|++|++++.... + ...+.+..+|...++
T Consensus 79 KP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~da 158 (486)
T COG1492 79 KPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIADA 158 (486)
T ss_pred eecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhhhcccEEEEecCCChhhcCcccccccceeeehhcCC
Confidence 4321 100 00 01 011122356788888899999999999999876532 2 134566777777889
Q ss_pred CEEEEEcCCCCc-HHHHHHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 148 PIILVIDLKIGC-INNALLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 148 ~vllV~~~~~~~-~~~~~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
|+|+|.+-+.+. +.++.-++..+. +.+.++.|+|+||++ .+....+..+++|++.+|.|+||++||......
T Consensus 159 pvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFR-Gd~~ll~~gik~Le~~tg~~vlGv~P~~~~~~~ 232 (486)
T COG1492 159 PVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFR-GDESLLDPGLKWLEELTGVPVLGVLPYLKDALR 232 (486)
T ss_pred CEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeC-CCHHHHhhHHHHHHHhhCCeeEeeccccccccC
Confidence 999999999864 344555565553 456689999999999 666666788999999999999999999886664
No 64
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.72 E-value=3.3e-16 Score=117.22 Aligned_cols=132 Identities=22% Similarity=0.232 Sum_probs=92.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP 87 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (233)
+|++++.|||+||||++.+||..++++|++|+++| .+++. ..+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd---~D~~~--------------------------~~~~------- 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLD---ADLGL--------------------------ANLD------- 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEE---CCCCC--------------------------CCCC-------
Confidence 48899999999999999999999999999999998 22211 0000
Q ss_pred CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHH
Q psy14904 88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSL 167 (233)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~ 167 (233)
||+||||+|+++.. ....++...| .+++|++++..++..+...+
T Consensus 45 -----------------------------yd~VIiD~p~~~~~------~~~~~l~~aD-~vviv~~~~~~s~~~~~~~l 88 (139)
T cd02038 45 -----------------------------YDYIIIDTGAGISD------NVLDFFLAAD-EVIVVTTPEPTSITDAYALI 88 (139)
T ss_pred -----------------------------CCEEEEECCCCCCH------HHHHHHHhCC-eEEEEcCCChhHHHHHHHHH
Confidence 99999999987542 1233444444 68899999887777766666
Q ss_pred HHHHh-CCCcEEEEEEcccCCCchhhhhhhHHHHHh------hcCCCceEecC
Q psy14904 168 EAINS-RGLKLIGWVANHTQIVDTLFANENYIELTK------YLNVTPLGRIP 213 (233)
Q Consensus 168 ~~l~~-~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~------~~~~pvlg~IP 213 (233)
+.+.+ .+..-+++|+||+. +.. ..++..+.+++ ..++|++|.||
T Consensus 89 ~~l~~~~~~~~~~lVvN~~~-~~~-~~~~~~~~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 89 KKLAKQLRVLNFRVVVNRAE-SPK-EGKKVFKRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHHhcCCCCEEEEEeCCC-CHH-HHHHHHHHHHHHHHHHhCCChhhceecC
Confidence 66643 33445889999997 432 22333333332 24679999998
No 65
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.70 E-value=2.3e-15 Score=119.59 Aligned_cols=144 Identities=13% Similarity=0.113 Sum_probs=86.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
|++|.++|.|||+||||.+..||..|+++|.+|.+|| .|++.. -..|-+. ......+++.+. + +.
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID---aDpn~p---------l~~W~~~-a~~~~~~~~~~~-V-~~ 65 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALID---ADPNQP---------LAKWAEN-AQRPGAWPDRIE-V-YE 65 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe---CCCCCc---------HHHHHHh-ccccCCCCCCee-E-Ee
Confidence 7899999999999999999999999999999999999 555431 1223221 111111101111 1 11
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL 164 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~ 164 (233)
. .....+.+.++... +.|||||||+.|+-+ + . .+.+.....-||+.+.......+++.
T Consensus 66 ~--------------~e~~~l~~~~e~a~~~~~d~VlvDleG~as-~-----~-~~~aia~sDlVlIP~~~s~lD~~eA~ 124 (231)
T PF07015_consen 66 A--------------DELTILEDAYEAAEASGFDFVLVDLEGGAS-E-----L-NDYAIARSDLVLIPMQPSQLDADEAA 124 (231)
T ss_pred c--------------cchhhHHHHHHHHHhcCCCEEEEeCCCCCc-h-----h-HHHHHHHCCEEEECCCCChHHHHHHH
Confidence 0 11234666666544 469999999987643 1 1 22222222345554544433444555
Q ss_pred HHHHHHH------hCCCcEEEEEEcccC
Q psy14904 165 LSLEAIN------SRGLKLIGWVANHTQ 186 (233)
Q Consensus 165 ~~~~~l~------~~~~~i~GiVlN~~~ 186 (233)
.+++.++ +.+++ ..|++||++
T Consensus 125 ~t~~~v~~~~~~~~~~ip-~~Vl~Tr~~ 151 (231)
T PF07015_consen 125 KTFKWVRRLEKAERRDIP-AAVLFTRVP 151 (231)
T ss_pred HHHHHHHHHHHhhCCCCC-eeEEEecCC
Confidence 5544443 45667 469999997
No 66
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.70 E-value=5.1e-16 Score=127.50 Aligned_cols=108 Identities=10% Similarity=0.109 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHH----HHh----CCCEEEEEcCCCCcHHHHHHHHHHHHhCCC
Q psy14904 104 SHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLA----EKL----GLPIILVIDLKIGCINNALLSLEAINSRGL 175 (233)
Q Consensus 104 ~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~----~~~----~~~vllV~~~~~~~~~~~~~~~~~l~~~~~ 175 (233)
.++.+.+++ .+||+|||||||.-.. ...+...+.. ..+ ...+++|+.++..++.++...++.++..++
T Consensus 114 ~~~~~~l~~--~~yD~VVvDtpPtg~t--lrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~ 189 (254)
T cd00550 114 DEFSRYIDE--AEYDVVVFDTAPTGHT--LRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGI 189 (254)
T ss_pred HHHHHHHhc--CCCCEEEECCCCcHHH--HHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCC
Confidence 344444443 4799999999873110 0111122211 111 125899999999899999999999999999
Q ss_pred cEEEEEEcccCCCchh-----------hhhhhHHHHHhhc-CCCceEecCCCCC
Q psy14904 176 KLIGWVANHTQIVDTL-----------FANENYIELTKYL-NVTPLGRIPYLYN 217 (233)
Q Consensus 176 ~i~GiVlN~~~~~~~~-----------~~~~~~~~l~~~~-~~pvlg~IP~~~~ 217 (233)
++.|+|+|++. +... .++..++.+++.+ +.|++ .||+.+.
T Consensus 190 ~v~gvV~N~v~-~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~-~vp~~~~ 241 (254)
T cd00550 190 DVDAVIVNQLL-PEDVTNCPFLEARREIQQKYLEEIEELFSDLPVA-KLPLLPE 241 (254)
T ss_pred CCCEEEEecCc-ccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEE-EeecCCC
Confidence 99999999997 4221 1234455666555 56776 7887653
No 67
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.68 E-value=2.4e-15 Score=118.53 Aligned_cols=198 Identities=20% Similarity=0.143 Sum_probs=113.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccC-CCCCCccc------hHHHHHHHHhCCCccc-ccc
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLN-NKNKIWFN------EDVNLLNKYSNSLYEF-TKL 78 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~-~~~~~l~~------~d~~~~~~~~~~~~~~-~~~ 78 (233)
.|+|+|. ||+||||+|+.|+..|..+ |++|+++| ++++.. ...-|... +--++++...+-.... ..+
T Consensus 2 kIaI~GK-GG~GKTtiaalll~~l~~~~~~~VLvVD---aDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~ 77 (255)
T COG3640 2 KIAITGK-GGVGKTTIAALLLKRLLSKGGYNVLVVD---ADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGE 77 (255)
T ss_pred eEEEecC-CCccHHHHHHHHHHHHHhcCCceEEEEe---CCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccc
Confidence 4788876 9999999999977777666 59999999 444310 00001100 1112233332211100 000
Q ss_pred eeeeeecCC-CChhhhhh-----------hc--CCC---CCHHHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHH
Q psy14904 79 INPYLFKYP-ISPYTSSN-----------LE--NRI---INTSHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSAD 140 (233)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~-----------~~--~~~---~~~~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~ 140 (233)
+.-..+... .......+ .+ |+. .....+++.++.+..+ ||+|||||-+|+-. +.+.
T Consensus 78 ~fk~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEH-fgRg----- 151 (255)
T COG3640 78 MFKENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEH-FGRG----- 151 (255)
T ss_pred ccccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhh-hccc-----
Confidence 100000000 00000000 00 111 1234678888887755 99999999888732 2222
Q ss_pred HHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 141 LAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 141 l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
.+..+ +-+++|++++..++.-+....+..++.+++-+++|+||++ .. +..+.......+.+++|.||+++.+..
T Consensus 152 ~~~~v-D~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~-e~----e~~~~~~~~~~~~~vlg~iP~d~~v~~ 225 (255)
T COG3640 152 TIEGV-DLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVD-EE----EELLRELAEELGLEVLGVIPYDPEVVE 225 (255)
T ss_pred cccCC-CEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeecc-ch----hHHHHhhhhccCCeEEEEccCCHHHHh
Confidence 12222 2589999998777765665666666788777999999998 32 344555555679999999999997765
Q ss_pred h
Q psy14904 221 N 221 (233)
Q Consensus 221 ~ 221 (233)
-
T Consensus 226 ~ 226 (255)
T COG3640 226 A 226 (255)
T ss_pred c
Confidence 4
No 68
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.64 E-value=4.7e-15 Score=119.09 Aligned_cols=164 Identities=12% Similarity=0.024 Sum_probs=92.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC---CCCCCccc------hHH---HHHHHHhCCC---c
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN---NKNKIWFN------EDV---NLLNKYSNSL---Y 73 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~---~~~~~l~~------~d~---~~~~~~~~~~---~ 73 (233)
|.+++.|||+||||++++||.+++++|+||++++ +++... ...+++.+ .+. .+........ .
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~---~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVS---TDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVER 77 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEE---CCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhh
Confidence 3567778999999999999999999999999998 322220 00022221 110 0111110000 0
Q ss_pred ccc-cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904 74 EFT-KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL 151 (233)
Q Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll 151 (233)
... .+.. +....+..|.... .-.+.+.++.+++. ||+|||||||+... .+.+....+.......+++
T Consensus 78 ~~~~~~~~-~~~~~~~~p~~~e--------ll~~~~l~~~l~~~~yD~IIiD~pp~~~~--~~~l~~~~l~~~~~~~vll 146 (217)
T cd02035 78 AWGGEGGL-MLELAAALPGIEE--------LASLLAVFREFSEGLYDVIVFDTAPTGHT--LRLLVRELLTDPERTSFRL 146 (217)
T ss_pred cccchhhh-HHhHhccCCCHHH--------HHHHHHHHHHHhcCCCCEEEECCCCchHH--HHHHHHHHccCCCceEEEE
Confidence 000 0000 0000001111110 11244455556665 99999999975211 0000011111101135899
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 152 VIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 152 V~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
|+.++..++.++...++.+++.+.++.|+|+|++.
T Consensus 147 V~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~ 181 (217)
T cd02035 147 VTLPEKLPLYETERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred EeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 99999999999999999999999999999999997
No 69
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=99.63 E-value=2.2e-14 Score=121.58 Aligned_cols=210 Identities=22% Similarity=0.260 Sum_probs=132.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee--cCcccCCCCCCccchHHHHHHHH-hCCCcccccceee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA--SGAYLNNKNKIWFNEDVNLLNKY-SNSLYEFTKLINP 81 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~--~~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~ 81 (233)
||++|++.++.+|+|||+++.+|+++|.++|.+|.++||+. .+.+.. ++...+ .+.. .++... .|
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~~~~~~~~~----~~~e~~---~~~~~~~l~~~-----~~ 68 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIGTRTGKDAD----DLTEED---IRATSSSLTYA-----EP 68 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEeccccccCCccc----hhHHHH---HHHhhhhcccC-----cc
Confidence 68999999999999999999999999999999999999997 333321 111111 1111 121110 01
Q ss_pred eeecCCCChhhhhhhcC-CCCCHHHHHHHHHHhhcCCCeEEEecc-CcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc
Q psy14904 82 YLFKYPISPYTSSNLEN-RIINTSHIINCYNYLSNLTDVIILEGI-GGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC 159 (233)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~D~vlID~~-~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~ 159 (233)
..+. ....-...+ .+..++.+.+.++++.+.+|++++++- +....+. ..-.+..+++.++++++++++....+
T Consensus 69 ~~~~----~ae~L~~~~~~d~l~e~i~~~y~e~~~~~~~vv~~g~~~~~~~~~-~~~ln~~iA~~Lna~~vlva~~~~~~ 143 (354)
T COG0857 69 LVLS----FAEVLLSTGQDDVLLEEILANYAELAKDADVVVVEGDVPTREGPY-ALDLNYEIAKNLNAAAVLVARALLVT 143 (354)
T ss_pred cchh----hHHHHhccccchHHHHHHHHHHHHHhccCceEEeccceeccccCc-cccccHHHHhhcCcchhhccccccCC
Confidence 1111 000000011 122356778888888888999999983 2221121 23468999999999999999998765
Q ss_pred HHHHHH----HHHHHHhCCCcEEEEEEcccCCCch-hhhhhhHHHHHhhcCCCceEecCCCCCCC---hhhhhhhcCCCC
Q psy14904 160 INNALL----SLEAINSRGLKLIGWVANHTQIVDT-LFANENYIELTKYLNVTPLGRIPYLYNLN---INLISHYLDFSS 231 (233)
Q Consensus 160 ~~~~~~----~~~~l~~~~~~i~GiVlN~~~~~~~-~~~~~~~~~l~~~~~~pvlg~IP~~~~l~---~~~~~~~~~~~~ 231 (233)
..+... ....+...+-++.|+|+|+.. ... ...+..++.+-+..+..+.+.+|..+.++ ..++++.|+.++
T Consensus 144 ~~~~~~~i~~~~~~~~~~~~~l~gVv~N~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~v~dl~~~l~a~v 222 (354)
T COG0857 144 PYELKSRVELALAAFGAAGNNLAGVVINNAP-VDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSPVRDLAKQLNAEV 222 (354)
T ss_pred hhhhhhHHHHHHHHhcccCCceEEEEecCCC-hhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCcHHHHHHhhCcee
Confidence 544333 333334444489999999665 221 11223344444455788889999988666 347888888776
Q ss_pred C
Q psy14904 232 L 232 (233)
Q Consensus 232 ~ 232 (233)
+
T Consensus 223 l 223 (354)
T COG0857 223 L 223 (354)
T ss_pred c
Confidence 4
No 70
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.62 E-value=1.1e-14 Score=103.82 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=76.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
+|+|+|+|||+||||++.+||.++++. |++|+++| .+++. ..
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d---~d~~~--------------------------~~-------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVD---LDLQF--------------------------GD-------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE---CCCCC--------------------------CC--------
Confidence 589999999999999999999999998 99999998 32220 00
Q ss_pred CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS 166 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~ 166 (233)
|+|||||||++.. ....+.... ..+++|+.++..++..+...
T Consensus 44 -------------------------------D~IIiDtpp~~~~------~~~~~l~~a-D~vlvvv~~~~~s~~~~~~~ 85 (106)
T cd03111 44 -------------------------------DYVVVDLGRSLDE------VSLAALDQA-DRVFLVTQQDLPSIRNAKRL 85 (106)
T ss_pred -------------------------------CEEEEeCCCCcCH------HHHHHHHHc-CeEEEEecCChHHHHHHHHH
Confidence 9999999988642 122333333 46899999988787777777
Q ss_pred HHHHHhCCC---cEEEEEEcc
Q psy14904 167 LEAINSRGL---KLIGWVANH 184 (233)
Q Consensus 167 ~~~l~~~~~---~i~GiVlN~ 184 (233)
++.+++.+. .-..+|+||
T Consensus 86 ~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 86 LELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCCCCcCceEEEecC
Confidence 777665443 357788886
No 71
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.61 E-value=5.1e-15 Score=119.34 Aligned_cols=195 Identities=16% Similarity=0.186 Sum_probs=105.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCC---CCcc-chHHHHHHHHhCCCccc-ccc-e-
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKN---KIWF-NEDVNLLNKYSNSLYEF-TKL-I- 79 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~---~~l~-~~d~~~~~~~~~~~~~~-~~~-~- 79 (233)
|.|+|-|. ||+||||++.||+.+|+++|+||+.+- ++|...... .+.. +.-.+.+++. +..+.. .+. +
T Consensus 1 r~IAiYGK-GGIGKST~~~Nlsaala~~G~kVl~iG---CDPK~DST~~ll~g~~~~Tvld~~~~~-~~~e~~~ledvv~ 75 (273)
T PF00142_consen 1 RKIAIYGK-GGIGKSTTASNLSAALAEMGKKVLQIG---CDPKADSTRLLLGGKAIPTVLDLLREK-GSVEDLELEDVVK 75 (273)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEE---ESSSSTSSCHHHTTSS-SBHHHHHHHH-CTGGGS-HHHHSE
T ss_pred CeEEEEcC-CCcccChhhhHHHHHHHhccceeeEec---ccCCCccceeccCCccchhHHHHHhhc-cccccCCCCcEEE
Confidence 46888887 999999999999999999999999974 444321100 1111 1122223332 210111 011 1
Q ss_pred ---eeeeecCCCChhhhhhhcCCCCCHHHHHHHHHH---hhcCCCeEEEecc-----CcccCccCCCCchHHHHHHhCCC
Q psy14904 80 ---NPYLFKYPISPYTSSNLENRIINTSHIINCYNY---LSNLTDVIILEGI-----GGFSVPFHDNENSADLAEKLGLP 148 (233)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~D~vlID~~-----~g~~~p~~~~~~~~~l~~~~~~~ 148 (233)
..+..-+..+|.+.....++.+ -.-.+.+++ ...++|+|+.|.. +|+..|+..++ + ..
T Consensus 76 ~G~~gi~CvEsGGPePGvGCaGRGI--~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir~g~--a-------~e 144 (273)
T PF00142_consen 76 EGFKGILCVESGGPEPGVGCAGRGI--ITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIREGY--A-------QE 144 (273)
T ss_dssp EEGGGEEEEE---SCTTSSBHHHHH--HHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHHTTS----------SE
T ss_pred eccCCceeeccCCCcccccccccch--hhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhhhcc--C-------CE
Confidence 1111111122322211111111 111223333 2346999999974 44444554332 2 26
Q ss_pred EEEEEcCCCCcH---HHHHHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 149 IILVIDLKIGCI---NNALLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 149 vllV~~~~~~~~---~~~~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
+++|++.+..++ +.+...++... +.+.++.|+|.|+-+ . ...++.++.+.+..|.|+++.||+++.+..
T Consensus 145 vyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~-~--~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ 217 (273)
T PF00142_consen 145 VYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN-V--DDEEEIVEDFAERIGTPIIAFIPRSEIVQR 217 (273)
T ss_dssp EEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS-S--TTHHHHHHHHHHHHTSEEEEEE---HHHHH
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC-C--CCchHHHHHHHHHcCCcEEEecCchHHHHH
Confidence 899999987654 56677777665 446799999999765 1 233567777788889999999999986653
No 72
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.61 E-value=1.1e-15 Score=122.07 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=57.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
.+|+|.|.|||+||||+|.|||.+|+++|+||.++|.+..++.. +.+......+.. ..+++.+. |.....
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~----~r~l~nr~~~~~-~~gi~Lp~-----p~~~~L 70 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSL----PRYLENRAAWAQ-RDGIELPV-----PSHFFL 70 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HH----HHHHHHHHHHHH-HHT-----------EEE-S
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCH----HHHHhccchhHH-hcCcccCC-----ccceee
Confidence 47999999999999999999999999999999999944333221 111100111111 12332211 111111
Q ss_pred CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCc
Q psy14904 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g 127 (233)
+. ....-..+.......|.+.+.++..++||+||||||+
T Consensus 71 ~~--~~~~v~~~~~~~~~~L~q~l~~l~~~~DfLVID~PGt 109 (261)
T PF09140_consen 71 PP--DQASVWEGENVEDKRLEQALADLEGDLDFLVIDTPGT 109 (261)
T ss_dssp SS--HHHHTTS-HHHHHHHHHHHHHHHHHH-SEEEEEE-SS
T ss_pred cc--cccccccCcchhHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 11 1111011111223578888888889999999999954
No 73
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2e-14 Score=112.92 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=117.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC---CCCc-cchHHHHHHHHhC-CCcccccce-
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK---NKIW-FNEDVNLLNKYSN-SLYEFTKLI- 79 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~---~~~l-~~~d~~~~~~~~~-~~~~~~~~~- 79 (233)
|+.|+|-+. ||.||||++.|++.+|+..|+||+.+- ++|....+ ..+. .+.-.+.++.... ..... +++
T Consensus 1 mr~iAiYGK-GGIGKSTts~N~aAAla~~GkkVl~vG---CDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~l-edvi 75 (278)
T COG1348 1 MRQIAIYGK-GGIGKSTTSQNLAAALAELGKKVLIVG---CDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLEL-EDVI 75 (278)
T ss_pred CceEEEecC-CCcCcchhHHHHHHHHHHcCCeEEEEc---CCCCcchHHHHhCCcccchHHHHHHhcCccccCCH-HHhe
Confidence 567888887 999999999999999999999999963 33322110 0111 1111222333110 00001 111
Q ss_pred ----eeeeecCCCChhhhhhhcCCCCC-HHHHHHHHHHhhcCCCeEEEecc-----CcccCccCCCCchHHHHHHhCCCE
Q psy14904 80 ----NPYLFKYPISPYTSSNLENRIIN-TSHIINCYNYLSNLTDVIILEGI-----GGFSVPFHDNENSADLAEKLGLPI 149 (233)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~D~vlID~~-----~g~~~p~~~~~~~~~l~~~~~~~v 149 (233)
..+..-+..+|.+.....++.+- .-.+.+.+....+..|+|+.|.. +|+..|+...+ |+ .+
T Consensus 76 ~~Gf~Gv~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~--Ad-------ei 146 (278)
T COG1348 76 FTGFGGVKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGY--AD-------EI 146 (278)
T ss_pred eccCCceEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehhccc--Cc-------EE
Confidence 11112223344443333333221 11122222222345699999974 56666776543 32 58
Q ss_pred EEEEcCCCCcH---HHHHHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904 150 ILVIDLKIGCI---NNALLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN 221 (233)
Q Consensus 150 llV~~~~~~~~---~~~~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~ 221 (233)
.+|++.+..++ +.+...++... ..++++-|+|.|+-. - +...+.++.+.+..|.|+++.||+++.+...
T Consensus 147 yIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~-~--~~e~e~v~~fa~~igt~li~~vPr~~ivq~a 219 (278)
T COG1348 147 YIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRS-V--DRERELVEAFAERLGTQLIHFVPRDNIVQKA 219 (278)
T ss_pred EEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCC-c--ccHHHHHHHHHHHhCCceEeeccchHHHHHH
Confidence 88998887654 55666665554 467889999999865 2 2335677888888999999999999977643
No 74
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.55 E-value=1.4e-13 Score=97.74 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=72.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP 87 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (233)
+|.|.|.|||+||||++.+||.+++++|.+|+++| .+. .
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d-----~d~--------------------------~---------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLID-----LDP--------------------------Q---------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe-----CCC--------------------------C----------
Confidence 48899999999999999999999999999999998 110 1
Q ss_pred CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHH
Q psy14904 88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSL 167 (233)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~ 167 (233)
||+||||+|++.... ...+.... ..++++++++..++..+...+
T Consensus 40 -----------------------------~d~viiD~p~~~~~~------~~~~l~~a-d~viv~~~~~~~s~~~~~~~~ 83 (104)
T cd02042 40 -----------------------------YDYIIIDTPPSLGLL------TRNALAAA-DLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred -----------------------------CCEEEEeCcCCCCHH------HHHHHHHC-CEEEEeccCCHHHHHHHHHHH
Confidence 999999999876421 11222222 367888888876666554444
Q ss_pred H---HH--HhCCCcEEEEEEc
Q psy14904 168 E---AI--NSRGLKLIGWVAN 183 (233)
Q Consensus 168 ~---~l--~~~~~~i~GiVlN 183 (233)
+ .. .+.+.++.|+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~vv~n 104 (104)
T cd02042 84 ETLILEDRLNPDLDILGILPT 104 (104)
T ss_pred HHHHHHHhcCCCCceEEEEeC
Confidence 3 22 2456778999987
No 75
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.50 E-value=2.4e-12 Score=106.59 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=95.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+.++|+++|. +|+||||++.+||.+++++|++|++++ ++.... .....+..+.... .+ ++..
T Consensus 71 ~~~vi~l~G~-~G~GKTTt~akLA~~l~~~g~~V~li~---~D~~r~--------~a~~ql~~~~~~~-----~i-~~~~ 132 (272)
T TIGR00064 71 KPNVILFVGV-NGVGKTTTIAKLANKLKKQGKSVLLAA---GDTFRA--------AAIEQLEEWAKRL-----GV-DVIK 132 (272)
T ss_pred CCeEEEEECC-CCCcHHHHHHHHHHHHHhcCCEEEEEe---CCCCCH--------HHHHHHHHHHHhC-----Ce-EEEe
Confidence 4678999975 999999999999999999999999998 433221 1222233332211 11 1111
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCchHHHHH---H-------hCCCEEEEE
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNENSADLAE---K-------LGLPIILVI 153 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~---~-------~~~~vllV~ 153 (233)
... .++.. ....+.++. ..++||+|||||||.... ......++.. . ....+++|.
T Consensus 133 ~~~-~~dp~----------~~~~~~l~~~~~~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl 198 (272)
T TIGR00064 133 QKE-GADPA----------AVAFDAIQKAKARNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVL 198 (272)
T ss_pred CCC-CCCHH----------HHHHHHHHHHHHCCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEE
Confidence 110 01110 122233333 347899999999987531 1111111111 1 134688999
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904 154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLY 216 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~ 216 (233)
++.. .-+......+..+ .+++.|+|+||++ .. ......+.... .++.|+. ++...+
T Consensus 199 ~a~~-~~~~~~~~~~f~~--~~~~~g~IlTKlD-e~-~~~G~~l~~~~-~~~~Pi~-~~~~Gq 254 (272)
T TIGR00064 199 DATT-GQNALEQAKVFNE--AVGLTGIILTKLD-GT-AKGGIILSIAY-ELKLPIK-FIGVGE 254 (272)
T ss_pred ECCC-CHHHHHHHHHHHh--hCCCCEEEEEccC-CC-CCccHHHHHHH-HHCcCEE-EEeCCC
Confidence 9864 3333333333222 3467899999998 32 22234444444 4588886 444433
No 76
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.45 E-value=6.9e-13 Score=111.51 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=49.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchh-----------hhhhhHHHHHhhc-CCCceEecCCC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTL-----------FANENYIELTKYL-NVTPLGRIPYL 215 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~-----------~~~~~~~~l~~~~-~~pvlg~IP~~ 215 (233)
.+++|+.++..++.++......++..|+++-++|+||+- |... .++..++.+++.+ +.|++ .||+.
T Consensus 209 ~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~vVvNrvl-p~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~-~vp~~ 286 (305)
T PF02374_consen 209 SFRLVTNPEPLAIAETERLLTELKLYGIPVDAVVVNRVL-PEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVV-KVPLL 286 (305)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE--TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEE-EEE--
T ss_pred EEEEEecCCcchHHHHHHHHHHHHhcCCccCeEEEEccc-cccccchHHHHHHHHHHHHHHHHHHHHhcCCCEE-EecCC
Confidence 479999999889999999999999999999999999995 3211 2345567777766 57776 77775
Q ss_pred C
Q psy14904 216 Y 216 (233)
Q Consensus 216 ~ 216 (233)
+
T Consensus 287 ~ 287 (305)
T PF02374_consen 287 P 287 (305)
T ss_dssp S
T ss_pred C
Confidence 5
No 77
>PRK10867 signal recognition particle protein; Provisional
Probab=99.44 E-value=1.1e-11 Score=108.35 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=93.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
..+|+++|. +|+||||++.+||.+|+++ |++|++++ ++.... ...+.++.+... ..+ ++ +
T Consensus 100 p~vI~~vG~-~GsGKTTtaakLA~~l~~~~G~kV~lV~---~D~~R~--------aa~eQL~~~a~~-----~gv-~v-~ 160 (433)
T PRK10867 100 PTVIMMVGL-QGAGKTTTAGKLAKYLKKKKKKKVLLVA---ADVYRP--------AAIEQLKTLGEQ-----IGV-PV-F 160 (433)
T ss_pred CEEEEEECC-CCCcHHHHHHHHHHHHHHhcCCcEEEEE---ccccch--------HHHHHHHHHHhh-----cCC-eE-E
Confidence 457888876 9999999999999999998 99999998 443321 122233332211 011 11 1
Q ss_pred cCCCChhhhhhhcCCCCCHHH-HHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHH---HHHH-hCCCEEEEEcCCCC
Q psy14904 85 KYPISPYTSSNLENRIINTSH-IINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSAD---LAEK-LGLPIILVIDLKIG 158 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~---l~~~-~~~~vllV~~~~~~ 158 (233)
..+.. .+... ..+.++.. ..+||+|||||||.... .. ....+ +... .-..+++|.++..+
T Consensus 161 ~~~~~-----------~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~--d~-~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 161 PSGDG-----------QDPVDIAKAALEEAKENGYDVVIVDTAGRLHI--DE-ELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred ecCCC-----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCccc--CH-HHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 11000 01112 23344433 35799999999987531 10 01111 1111 12468899987432
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.++....+.+.+ .+++-|+|+|+.+ ... . ....-.+...+++|+.
T Consensus 227 --q~av~~a~~F~~-~~~i~giIlTKlD-~~~-r-gG~alsi~~~~~~PI~ 271 (433)
T PRK10867 227 --QDAVNTAKAFNE-ALGLTGVILTKLD-GDA-R-GGAALSIRAVTGKPIK 271 (433)
T ss_pred --HHHHHHHHHHHh-hCCCCEEEEeCcc-Ccc-c-ccHHHHHHHHHCcCEE
Confidence 334444444443 5788999999998 432 1 2233344456688875
No 78
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.43 E-value=1.5e-11 Score=107.46 Aligned_cols=165 Identities=21% Similarity=0.246 Sum_probs=90.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
.+++++|. +|+||||++.+||.+|+ ++|++|++++ ++... + ...+.+..+... . .+..+...
T Consensus 100 ~vi~~vG~-~GsGKTTtaakLA~~l~~~~g~kV~lV~---~D~~R----~----~a~~QL~~~a~~-~----gvp~~~~~ 162 (428)
T TIGR00959 100 TVILMVGL-QGSGKTTTCGKLAYYLKKKQGKKVLLVA---CDLYR----P----AAIEQLKVLGQQ-V----GVPVFALG 162 (428)
T ss_pred EEEEEECC-CCCcHHHHHHHHHHHHHHhCCCeEEEEe---ccccc----h----HHHHHHHHHHHh-c----CCceEecC
Confidence 35556655 99999999999999987 6899999998 44332 1 112222222210 0 01111111
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHH---HHHh-CCCEEEEEcCCCCcH
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADL---AEKL-GLPIILVIDLKIGCI 160 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l---~~~~-~~~vllV~~~~~~~~ 160 (233)
.+..| .+...+.++.. .++||+|||||||.... +.....++ .... ...+++|.++..+
T Consensus 163 ~~~~P------------~~i~~~al~~~~~~~~DvVIIDTaGr~~~---d~~l~~eL~~i~~~~~p~e~lLVvda~tg-- 225 (428)
T TIGR00959 163 KGQSP------------VEIARRALEYAKENGFDVVIVDTAGRLQI---DEELMEELAAIKEILNPDEILLVVDAMTG-- 225 (428)
T ss_pred CCCCH------------HHHHHHHHHHHHhcCCCEEEEeCCCcccc---CHHHHHHHHHHHHhhCCceEEEEEeccch--
Confidence 10111 01123444443 46899999999987531 11111222 1111 3468899987532
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 161 NNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 161 ~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.++....+.+. ..+++.|+|+|+.+ ... . ......+...+++|+.
T Consensus 226 q~~~~~a~~f~-~~v~i~giIlTKlD-~~~-~-~G~~lsi~~~~~~PI~ 270 (428)
T TIGR00959 226 QDAVNTAKTFN-ERLGLTGVVLTKLD-GDA-R-GGAALSVRSVTGKPIK 270 (428)
T ss_pred HHHHHHHHHHH-hhCCCCEEEEeCcc-Ccc-c-ccHHHHHHHHHCcCEE
Confidence 33444444433 34678899999998 432 1 2334444556788886
No 79
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.41 E-value=1.5e-11 Score=106.95 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=96.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
..+|+++|. +|+||||++..||.+|+++|++|++++ ++++.. ...++++.+.... .+ |+...
T Consensus 100 ~~vi~lvG~-~GvGKTTtaaKLA~~l~~~G~kV~lV~---~D~~R~--------aA~eQLk~~a~~~-----~v-p~~~~ 161 (429)
T TIGR01425 100 QNVIMFVGL-QGSGKTTTCTKLAYYYQRKGFKPCLVC---ADTFRA--------GAFDQLKQNATKA-----RI-PFYGS 161 (429)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEc---Ccccch--------hHHHHHHHHhhcc-----CC-eEEee
Confidence 468899997 999999999999999999999999997 433321 2444555443211 11 21111
Q ss_pred CCCChhhhhhhcCCCCC-HHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH---Hh-CCCEEEEEcCCCCc
Q psy14904 86 YPISPYTSSNLENRIIN-TSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE---KL-GLPIILVIDLKIGC 159 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~---~~-~~~vllV~~~~~~~ 159 (233)
.. . .+ .....+.+++++ ++||+|||||||.... ......++.. .. ...+++|.++..+.
T Consensus 162 ~~-~-----------~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~---d~~lm~El~~i~~~~~p~e~lLVlda~~Gq 226 (429)
T TIGR01425 162 YT-E-----------SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQ---EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ 226 (429)
T ss_pred cC-C-----------CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcc---hHHHHHHHHHHhhhcCCcEEEEEeccccCh
Confidence 00 0 01 122344555554 4899999999987532 1112222222 11 13588999876431
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCC
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPY 214 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~ 214 (233)
++....+.+. ..+++-|+|+||.+ ... .....+.... .++.|+. +|..
T Consensus 227 --~a~~~a~~F~-~~~~~~g~IlTKlD-~~a-rgG~aLs~~~-~t~~PI~-fig~ 274 (429)
T TIGR01425 227 --AAEAQAKAFK-DSVDVGSVIITKLD-GHA-KGGGALSAVA-ATKSPII-FIGT 274 (429)
T ss_pred --hHHHHHHHHH-hccCCcEEEEECcc-CCC-CccHHhhhHH-HHCCCeE-EEcC
Confidence 2233334443 23578999999999 422 2223333333 4577775 4443
No 80
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.40 E-value=5.2e-11 Score=100.59 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=92.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
..++|+++|. +|+||||++.+||..++.+|++|++++ .+.+.. .....+..+... ..+ ++..
T Consensus 113 ~~~vi~lvGp-nGsGKTTt~~kLA~~l~~~g~~V~Li~---~D~~r~--------~a~eql~~~a~~-----~~i-~~~~ 174 (318)
T PRK10416 113 KPFVILVVGV-NGVGKTTTIGKLAHKYKAQGKKVLLAA---GDTFRA--------AAIEQLQVWGER-----VGV-PVIA 174 (318)
T ss_pred CCeEEEEECC-CCCcHHHHHHHHHHHHHhcCCeEEEEe---cCccch--------hhHHHHHHHHHH-----cCc-eEEE
Confidence 3568999996 999999999999999999999999987 333321 111222222110 011 1111
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHH-HhhcCCCeEEEeccCcccCccCCCCchHHHHHH----------hCCCEEEEE
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYN-YLSNLTDVIILEGIGGFSVPFHDNENSADLAEK----------LGLPIILVI 153 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----------~~~~vllV~ 153 (233)
.. .....+ ....+.+. ...++||+|||||||.... ......++.+. ....+++|.
T Consensus 175 ~~-~~~dpa----------~~v~~~l~~~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl 240 (318)
T PRK10416 175 QK-EGADPA----------SVAFDAIQAAKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVL 240 (318)
T ss_pred eC-CCCCHH----------HHHHHHHHHHHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence 10 011110 11222332 3457899999999987532 11111222211 123478888
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
++.. ..+......+.. ..+++-|+|+||.+ .. ......+..+. .+++|+.
T Consensus 241 ~a~~-g~~~~~~a~~f~--~~~~~~giIlTKlD-~t-~~~G~~l~~~~-~~~~Pi~ 290 (318)
T PRK10416 241 DATT-GQNALSQAKAFH--EAVGLTGIILTKLD-GT-AKGGVVFAIAD-ELGIPIK 290 (318)
T ss_pred ECCC-ChHHHHHHHHHH--hhCCCCEEEEECCC-CC-CCccHHHHHHH-HHCCCEE
Confidence 8874 333333332222 33577899999998 32 23334455554 4588886
No 81
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.37 E-value=4.5e-11 Score=102.26 Aligned_cols=174 Identities=11% Similarity=0.120 Sum_probs=104.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
.++|++.|. +|+||||++..||..|..+|++|++++ ++++.. .....++.+.... .+ |+...
T Consensus 241 ~~vI~LVGp-tGvGKTTTiaKLA~~L~~~GkkVglI~---aDt~Ri--------aAvEQLk~yae~l-----gi-pv~v~ 302 (436)
T PRK11889 241 VQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFIT---TDHSRI--------GTVQQLQDYVKTI-----GF-EVIAV 302 (436)
T ss_pred CcEEEEECC-CCCcHHHHHHHHHHHHHHcCCcEEEEe---cCCcch--------HHHHHHHHHhhhc-----CC-cEEec
Confidence 368999999 999999999999999999999999998 433321 1223333332210 11 11110
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhhc--CCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCCCc
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLSN--LTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKIGC 159 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~~~ 159 (233)
.+...+.+.++.+++ +||+|||||+|.... ......++.... ...+++|.++.. .
T Consensus 303 ---------------~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~k---d~~lm~EL~~~lk~~~PdevlLVLsATt-k 363 (436)
T PRK11889 303 ---------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLTLSASM-K 363 (436)
T ss_pred ---------------CCHHHHHHHHHHHHhccCCCEEEEeCccccCc---CHHHHHHHHHHHhhcCCCeEEEEECCcc-C
Confidence 123456677777764 699999999987532 111223332221 134788877653 2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCChh
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLNIN 221 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~~~ 221 (233)
-+++...++.++. +++-|+|++|.+ .. ......+..+. .++.|+. +. ||+|-....+
T Consensus 364 ~~d~~~i~~~F~~--~~idglI~TKLD-ET-~k~G~iLni~~-~~~lPIsyit~GQ~VPeDI~~A~~ 425 (436)
T PRK11889 364 SKDMIEIITNFKD--IHIDGIVFTKFD-ET-ASSGELLKIPA-VSSAPIVLMTDGQDVKKNIHIATA 425 (436)
T ss_pred hHHHHHHHHHhcC--CCCCEEEEEccc-CC-CCccHHHHHHH-HHCcCEEEEeCCCCCCcchhhCCH
Confidence 2344455555543 678899999999 32 23334455444 3577765 32 7777655543
No 82
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.36 E-value=1.7e-10 Score=89.29 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=88.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP 87 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (233)
++.++|. +|+||||++.+|+..++++|++|++++ ++... + .....+..+... ..+. + ...+
T Consensus 2 ~~~~~G~-~G~GKTt~~~~la~~~~~~g~~v~~i~---~D~~~----~----~~~~~l~~~~~~-----~~~~-~-~~~~ 62 (173)
T cd03115 2 VILLVGL-QGVGKTTTAAKLALYLKKKGKKVLLVA---ADTYR----P----AAIEQLRVLGEQ-----VGVP-V-FEEG 62 (173)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEE---cCCCC----h----HHHHHHHHhccc-----CCeE-E-EecC
Confidence 4566666 999999999999999999999999998 43321 1 112223222211 0111 1 1110
Q ss_pred CChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCc-hHHHHH-HhCCCEEEEEcCCCCcHHHHH
Q psy14904 88 ISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNEN-SADLAE-KLGLPIILVIDLKIGCINNAL 164 (233)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~-~~~l~~-~~~~~vllV~~~~~~~~~~~~ 164 (233)
....+ .+.+.+.+++ ...+||+||||++|.....- ..+. ...+.. .....+++|.++.. . .+..
T Consensus 63 ~~~~~----------~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~-~~l~~l~~l~~~~~~~~~~lVv~~~~-~-~~~~ 129 (173)
T cd03115 63 EGKDP----------VSIAKRAIEHAREENFDVVIVDTAGRLQIDE-NLMEELKKIKRVVKPDEVLLVVDAMT-G-QDAV 129 (173)
T ss_pred CCCCH----------HHHHHHHHHHHHhCCCCEEEEECcccchhhH-HHHHHHHHHHhhcCCCeEEEEEECCC-C-hHHH
Confidence 00000 1122334433 34689999999987642100 0000 011111 12457888998753 2 2233
Q ss_pred HHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 165 LSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 165 ~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.....+.+ ..++.|+|+||++ ... .....+. +....++|+.
T Consensus 130 ~~~~~~~~-~~~~~~viltk~D-~~~-~~g~~~~-~~~~~~~p~~ 170 (173)
T cd03115 130 NQAKAFNE-ALGITGVILTKLD-GDA-RGGAALS-IRAVTGKPIK 170 (173)
T ss_pred HHHHHHHh-hCCCCEEEEECCc-CCC-Ccchhhh-hHHHHCcCeE
Confidence 33333321 2336899999998 322 2334455 5556788885
No 83
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.34 E-value=1.3e-10 Score=99.05 Aligned_cols=168 Identities=13% Similarity=0.187 Sum_probs=99.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
.++++++|+ +|+||||++.+||..+.++|++|++++ .+++.. .....++.+.... .+ |+...
T Consensus 206 ~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lIt---aDtyR~--------gAveQLk~yae~l-----gv-pv~~~ 267 (407)
T PRK12726 206 HRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFIT---TDTFRS--------GAVEQFQGYADKL-----DV-ELIVA 267 (407)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe---CCccCc--------cHHHHHHHHhhcC-----CC-CEEec
Confidence 568999998 699999999999999999999999998 444321 1233444443311 11 11111
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHh---C-CCEEEEEcCCCCc
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKL---G-LPIILVIDLKIGC 159 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~---~-~~vllV~~~~~~~ 159 (233)
.+...+.+.++.++ ++||+|||||||.... ......++.... . ..+++|.++.. .
T Consensus 268 ---------------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~~~p~~~~LVLsag~-~ 328 (407)
T PRK12726 268 ---------------TSPAELEEAVQYMTYVNCVDHILIDTVGRNYL---AEESVSEISAYTDVVHPDLTCFTFSSGM-K 328 (407)
T ss_pred ---------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc---CHHHHHHHHHHhhccCCceEEEECCCcc-c
Confidence 12345677777775 6899999999987531 111222222211 1 12456665543 2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCC
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYL 215 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~ 215 (233)
..++....+.. ..+++-|+|++|.+ .. ......+.... .++.|+. +. ||++
T Consensus 329 ~~d~~~i~~~f--~~l~i~glI~TKLD-ET-~~~G~~Lsv~~-~tglPIsylt~GQ~VpdD 384 (407)
T PRK12726 329 SADVMTILPKL--AEIPIDGFIITKMD-ET-TRIGDLYTVMQ-ETNLPVLYMTDGQNITEN 384 (407)
T ss_pred HHHHHHHHHhc--CcCCCCEEEEEccc-CC-CCccHHHHHHH-HHCCCEEEEecCCCCCcc
Confidence 23333333332 35778899999999 32 23344455444 3577765 32 6763
No 84
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.32 E-value=1.7e-10 Score=98.81 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=103.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
..+|+++|- .|+||||+|.-||.+|.++|++|+++- ++... +...+.++.... .. .+ ++ |.
T Consensus 100 P~vImmvGL-QGsGKTTt~~KLA~~lkk~~~kvllVa---aD~~R--------pAA~eQL~~La~-q~----~v-~~-f~ 160 (451)
T COG0541 100 PTVILMVGL-QGSGKTTTAGKLAKYLKKKGKKVLLVA---ADTYR--------PAAIEQLKQLAE-QV----GV-PF-FG 160 (451)
T ss_pred CeEEEEEec-cCCChHhHHHHHHHHHHHcCCceEEEe---cccCC--------hHHHHHHHHHHH-Hc----CC-ce-ec
Confidence 457999998 999999999999999999999999985 33322 123334444321 00 11 11 22
Q ss_pred CCCChhhhhhhcCCCCC-HHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH---Hh-CCCEEEEEcCCCCc
Q psy14904 86 YPISPYTSSNLENRIIN-TSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE---KL-GLPIILVIDLKIGC 159 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~---~~-~~~vllV~~~~~~~ 159 (233)
... ..+ .+-.++.+++.+ +.||+|||||+|.+.. +.....++.. .. -..+++|+++..+.
T Consensus 161 ~~~-----------~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i---de~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 161 SGT-----------EKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHI---DEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred CCC-----------CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccc---cHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 110 011 123466676655 4699999999988742 1112222221 11 24799999987542
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCC--ceEe---cCCCCCCChhh
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVT--PLGR---IPYLYNLNINL 222 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~p--vlg~---IP~~~~l~~~~ 222 (233)
++....+.+ +..+.+-|+|+++.+ .+.+- ...-.++..+|.| ++|+ |...+.++..-
T Consensus 227 --dA~~~A~aF-~e~l~itGvIlTKlD-GdaRG--GaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R 288 (451)
T COG0541 227 --DAVNTAKAF-NEALGITGVILTKLD-GDARG--GAALSARAITGKPIKFIGTGEKIDDLEPFHPDR 288 (451)
T ss_pred --HHHHHHHHH-hhhcCCceEEEEccc-CCCcc--hHHHhhHHHHCCCeEEEecCCCcccCCCcChHH
Confidence 233344443 345788999999999 43221 1222233345655 4454 55555555443
No 85
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.32 E-value=3.1e-12 Score=97.28 Aligned_cols=140 Identities=19% Similarity=0.165 Sum_probs=74.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccch-H-HHHHHHH-hCCC----cccccce
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNE-D-VNLLNKY-SNSL----YEFTKLI 79 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~-d-~~~~~~~-~~~~----~~~~~~~ 79 (233)
|+|+|+|.+||+||||+|.+||..|+++|++|+++|-....+.... ..+.... + ..++... .+.. ....+.+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 79 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSR-LLGIEPERGLSDLLYDKKSGDENLSERDLSDHI 79 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHH-HTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccc-ccccccccchhhHhcCccccccchhhhhHHHHh
Confidence 6899999999999999999999999999999999983221111000 0000000 0 0111110 0000 0000000
Q ss_pred e-----ee-eecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904 80 N-----PY-LFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI 153 (233)
Q Consensus 80 ~-----~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~ 153 (233)
. .. .+..+....... ....+.+.+.++.+++.||+||||+++.+..+ ....++... ..+++|+
T Consensus 80 ~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~li~~l~~~yd~IivD~~~~~~~~-----~~~~~l~~~-D~ii~v~ 148 (157)
T PF13614_consen 80 YSDAHDGLDLLPPPSSPEDLE-----ELTPEDVEELIDALKEHYDYIIVDLPSSLSNP-----DTQAVLELA-DKIILVV 148 (157)
T ss_dssp EEESSTTEEEE--SSSSHHHH-----HHTSHHHHHHHHHHHHHSSEEEEEEESTTTHT-----HHHHHHTTH-SEEEEEE
T ss_pred eeccCCCeEEecCCCCCCchh-----hcCHHHHHHHHHHHHHcCCEEEEECcCCccHH-----HHHHHHHHC-CEEEEEE
Confidence 0 00 111111111111 12456788889999999999999998765421 111233333 4788888
Q ss_pred cCCCC
Q psy14904 154 DLKIG 158 (233)
Q Consensus 154 ~~~~~ 158 (233)
.++..
T Consensus 149 ~~~~~ 153 (157)
T PF13614_consen 149 RPDVT 153 (157)
T ss_dssp ETTHH
T ss_pred CCCcc
Confidence 88753
No 86
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.31 E-value=2.4e-10 Score=100.13 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=92.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
..+|+++|. +|+||||++.+||.+|+++|++|++++ ++... + ...+.++.+... . .+ |+ +.
T Consensus 95 p~vI~lvG~-~GsGKTTtaakLA~~L~~~g~kV~lV~---~D~~R----~----aa~eQL~~la~~-~----gv-p~-~~ 155 (437)
T PRK00771 95 PQTIMLVGL-QGSGKTTTAAKLARYFKKKGLKVGLVA---ADTYR----P----AAYDQLKQLAEK-I----GV-PF-YG 155 (437)
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHHHHcCCeEEEec---CCCCC----H----HHHHHHHHHHHH-c----CC-cE-Ee
Confidence 457888887 999999999999999999999999997 33321 1 112223322210 0 01 11 11
Q ss_pred CCCChhhhhhhcCCCCC-HHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchH---HHH-HHhCCCEEEEEcCCCCcH
Q psy14904 86 YPISPYTSSNLENRIIN-TSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSA---DLA-EKLGLPIILVIDLKIGCI 160 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~---~l~-~~~~~~vllV~~~~~~~~ 160 (233)
.+.. .+ .+.+.+.++++. ++|+|||||||..... .. ... .+. ......+++|.++..+
T Consensus 156 ~~~~-----------~d~~~i~~~al~~~~-~~DvVIIDTAGr~~~d--~~-lm~El~~l~~~~~pdevlLVvda~~g-- 218 (437)
T PRK00771 156 DPDN-----------KDAVEIAKEGLEKFK-KADVIIVDTAGRHALE--ED-LIEEMKEIKEAVKPDEVLLVIDATIG-- 218 (437)
T ss_pred cCCc-----------cCHHHHHHHHHHHhh-cCCEEEEECCCcccch--HH-HHHHHHHHHHHhcccceeEEEecccc--
Confidence 1000 11 123456666654 5799999999875321 00 111 111 1112468889888664
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 161 NNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 161 ~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.++....+.+ +..+++.|+|+||++ ... ..-..+.... .++.|+.
T Consensus 219 q~av~~a~~F-~~~l~i~gvIlTKlD-~~a-~~G~~ls~~~-~~~~Pi~ 263 (437)
T PRK00771 219 QQAKNQAKAF-HEAVGIGGIIITKLD-GTA-KGGGALSAVA-ETGAPIK 263 (437)
T ss_pred HHHHHHHHHH-HhcCCCCEEEEeccc-CCC-cccHHHHHHH-HHCcCEE
Confidence 2333334433 234778999999999 432 2233344333 4577775
No 87
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.30 E-value=1.5e-10 Score=91.31 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=96.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
++|++.|+ +||||||+++.||.++..+|++|+++- .+... ....+.++.+...- .+ |+....
T Consensus 2 ~vi~lvGp-tGvGKTTt~aKLAa~~~~~~~~v~lis---~D~~R--------~ga~eQL~~~a~~l-----~v-p~~~~~ 63 (196)
T PF00448_consen 2 KVIALVGP-TGVGKTTTIAKLAARLKLKGKKVALIS---ADTYR--------IGAVEQLKTYAEIL-----GV-PFYVAR 63 (196)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEE---ESTSS--------THHHHHHHHHHHHH-----TE-EEEESS
T ss_pred EEEEEECC-CCCchHhHHHHHHHHHhhccccceeec---CCCCC--------ccHHHHHHHHHHHh-----cc-ccchhh
Confidence 68999999 999999999999999999999999985 22221 12334444443210 01 111110
Q ss_pred CCChhhhhhhcCCCCC-HHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHh-CCCEEEEEcCCCCcHHHH
Q psy14904 87 PISPYTSSNLENRIIN-TSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKL-GLPIILVIDLKIGCINNA 163 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~-~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~-~~~vllV~~~~~~~~~~~ 163 (233)
...+ .+.+.+.+++.+ ++||+||||++|....-.........+.... ...+++|.++..+. ++.
T Consensus 64 ------------~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~-~~~ 130 (196)
T PF00448_consen 64 ------------TESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ-EDL 130 (196)
T ss_dssp ------------TTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG-HHH
T ss_pred ------------cchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh-HHH
Confidence 0011 133556666654 5799999999875421000000111222222 45688898887643 323
Q ss_pred HHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCC
Q psy14904 164 LLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNL 218 (233)
Q Consensus 164 ~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l 218 (233)
....+..+. .++-|+|++|.+ .. ......+..+.+ .+.|+- +|-..+++
T Consensus 131 ~~~~~~~~~--~~~~~lIlTKlD-et-~~~G~~l~~~~~-~~~Pi~-~it~Gq~V 179 (196)
T PF00448_consen 131 EQALAFYEA--FGIDGLILTKLD-ET-ARLGALLSLAYE-SGLPIS-YITTGQRV 179 (196)
T ss_dssp HHHHHHHHH--SSTCEEEEESTT-SS-STTHHHHHHHHH-HTSEEE-EEESSSST
T ss_pred HHHHHHhhc--ccCceEEEEeec-CC-CCcccceeHHHH-hCCCeE-EEECCCCh
Confidence 333333333 345699999999 32 223345555553 578874 55555554
No 88
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.24 E-value=7.8e-10 Score=95.57 Aligned_cols=161 Identities=11% Similarity=0.074 Sum_probs=94.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH----cCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK----RGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINP 81 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~----~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 81 (233)
.++|++.|. +|+||||++..||..+.. +|++|+++. .++... ...++++.+.... .+ |
T Consensus 174 ~~vi~lvGp-tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit---~Dt~R~--------aa~eQL~~~a~~l-----gv-p 235 (388)
T PRK12723 174 KRVFILVGP-TGVGKTTTIAKLAAIYGINSDDKSLNIKIIT---IDNYRI--------GAKKQIQTYGDIM-----GI-P 235 (388)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHhhhccCCCeEEEEe---ccCccH--------HHHHHHHHHhhcC-----Cc-c
Confidence 357778877 799999999999999874 589999987 433321 2333444443211 01 1
Q ss_pred eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHH---HHHh--CCCEEEEEcCC
Q psy14904 82 YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADL---AEKL--GLPIILVIDLK 156 (233)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l---~~~~--~~~vllV~~~~ 156 (233)
+... ...+.+.+.+.++ .+||+||||++|.... ......++ .... ...+++|.++.
T Consensus 236 v~~~---------------~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 236 VKAI---------------ESFKDLKEEITQS-KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred eEee---------------CcHHHHHHHHHHh-CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 1111 1234566667666 6899999999987532 11111222 2222 23588898887
Q ss_pred CCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 157 IGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.+ .+++....+.. ..+++-|+|++|.+ . +......+..+. ..+.|+.
T Consensus 297 ~~-~~~~~~~~~~~--~~~~~~~~I~TKlD-e-t~~~G~~l~~~~-~~~~Pi~ 343 (388)
T PRK12723 297 TK-TSDVKEIFHQF--SPFSYKTVIFTKLD-E-TTCVGNLISLIY-EMRKEVS 343 (388)
T ss_pred CC-HHHHHHHHHHh--cCCCCCEEEEEecc-C-CCcchHHHHHHH-HHCCCEE
Confidence 64 33333333333 24667899999999 3 223344455444 3477775
No 89
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.22 E-value=5.1e-10 Score=98.19 Aligned_cols=164 Identities=16% Similarity=0.100 Sum_probs=92.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH--HcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK--KRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~--~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
.++++++|+ +||||||++++||.+++ +.|++|++++ .+++.. .....+..+.... .+ |+.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~~~~g~~V~li~---~D~~r~--------~a~eqL~~~a~~~-----~v-p~~ 282 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYALLYGKKKVALIT---LDTYRI--------GAVEQLKTYAKIM-----GI-PVE 282 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEE---CCccHH--------HHHHHHHHHHHHh-----CC-ceE
Confidence 358899988 99999999999999998 4689999998 433311 1112233222110 01 111
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHH--hCCCEEEEEcCCCCcHH
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEK--LGLPIILVIDLKIGCIN 161 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~--~~~~vllV~~~~~~~~~ 161 (233)
.. .....+.+.++++. +||+||||++|..............+... ....+.+|.++..+ ..
T Consensus 283 ~~---------------~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~ 345 (424)
T PRK05703 283 VV---------------YDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YE 345 (424)
T ss_pred cc---------------CCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HH
Confidence 10 01234566666654 79999999987642110000011222221 12356777776543 23
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 162 NALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 162 ~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
++....+.++. +.+-++|+++++ .. ......+..+.+ .+.|+.
T Consensus 346 ~l~~~~~~f~~--~~~~~vI~TKlD-et-~~~G~i~~~~~~-~~lPv~ 388 (424)
T PRK05703 346 DLKDIYKHFSR--LPLDGLIFTKLD-ET-SSLGSILSLLIE-SGLPIS 388 (424)
T ss_pred HHHHHHHHhCC--CCCCEEEEeccc-cc-ccccHHHHHHHH-HCCCEE
Confidence 34444555543 345699999999 42 333455555553 478876
No 90
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.22 E-value=7.2e-10 Score=95.88 Aligned_cols=171 Identities=14% Similarity=0.167 Sum_probs=95.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH-HHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF-KKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l-~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
++++++|. +|+||||++.+||..+ ..+|++|++++ .+.+.. ...+.++.+.... .+ ++...
T Consensus 224 ~vi~lvGp-tGvGKTTtaaKLA~~~~~~~G~~V~Lit---~Dt~R~--------aA~eQLk~yAe~l-----gv-p~~~~ 285 (432)
T PRK12724 224 KVVFFVGP-TGSGKTTSIAKLAAKYFLHMGKSVSLYT---TDNYRI--------AAIEQLKRYADTM-----GM-PFYPV 285 (432)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHHHhcCCeEEEec---ccchhh--------hHHHHHHHHHHhc-----CC-Ceeeh
Confidence 46778876 9999999999999876 57899999987 433321 1222333332210 01 11000
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHH---HHh----CCCEEEEEcCCCC
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLA---EKL----GLPIILVIDLKIG 158 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~---~~~----~~~vllV~~~~~~ 158 (233)
.....+.+.++ +++||+|||||+|.... .......+. ... ...+++|.++..+
T Consensus 286 ---------------~~~~~l~~~l~--~~~~D~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 286 ---------------KDIKKFKETLA--RDGSELILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred ---------------HHHHHHHHHHH--hCCCCEEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 00123344443 36899999999765321 111122222 211 2357888888764
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCChh
Q psy14904 159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLNIN 221 (233)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~~~ 221 (233)
. +++....+.. ..+++-|+|++|.+ . .......+.... .++.|+. +. ||+|-....+
T Consensus 346 ~-~~~~~~~~~f--~~~~~~glIlTKLD-E-t~~~G~il~i~~-~~~lPI~ylt~GQ~VPeDi~~A~~ 407 (432)
T PRK12724 346 Y-HHTLTVLKAY--ESLNYRRILLTKLD-E-ADFLGSFLELAD-TYSKSFTYLSVGQEVPFDILNATK 407 (432)
T ss_pred H-HHHHHHHHHh--cCCCCCEEEEEccc-C-CCCccHHHHHHH-HHCCCEEEEecCCCCCCCHHHhhH
Confidence 3 3344444444 45677899999999 3 223344555444 4577775 22 7766554433
No 91
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.21 E-value=1e-09 Score=97.24 Aligned_cols=162 Identities=10% Similarity=0.026 Sum_probs=91.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
.++|+|+|. +|+||||++.+|+..+.++ |++|.+++ .+.+.. ...+.+..+... +. +.
T Consensus 350 G~vIaLVGP-tGvGKTTtaakLAa~la~~~~gkkVaLId---tDtyRi--------gA~EQLk~ya~i-------Lg-v~ 409 (559)
T PRK12727 350 GGVIALVGP-TGAGKTTTIAKLAQRFAAQHAPRDVALVT---TDTQRV--------GGREQLHSYGRQ-------LG-IA 409 (559)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCceEEEe---cccccc--------cHHHHHHHhhcc-------cC-ce
Confidence 468999988 8999999999999998876 57999987 333221 112223322211 10 01
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCC--chHHHHHHhCCCEEEEEcCCCCcHH
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNE--NSADLAEKLGLPIILVIDLKIGCIN 161 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~--~~~~l~~~~~~~vllV~~~~~~~~~ 161 (233)
+... .....+.+.++++ .+||+||||++|.... ...+ ....+........++|.+... +..
T Consensus 410 v~~a-------------~d~~~L~~aL~~l-~~~DLVLIDTaG~s~~--D~~l~eeL~~L~aa~~~a~lLVLpAts-s~~ 472 (559)
T PRK12727 410 VHEA-------------DSAESLLDLLERL-RDYKLVLIDTAGMGQR--DRALAAQLNWLRAARQVTSLLVLPANA-HFS 472 (559)
T ss_pred eEec-------------CcHHHHHHHHHHh-ccCCEEEecCCCcchh--hHHHHHHHHHHHHhhcCCcEEEEECCC-Chh
Confidence 1100 1223466667666 4799999999976421 0000 001111112335666776654 333
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 162 NALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 162 ~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
+....++.++. .++.|+|+||++ .. ......+..+.+ .+.|+.
T Consensus 473 Dl~eii~~f~~--~~~~gvILTKlD-Et-~~lG~aLsv~~~-~~LPI~ 515 (559)
T PRK12727 473 DLDEVVRRFAH--AKPQGVVLTKLD-ET-GRFGSALSVVVD-HQMPIT 515 (559)
T ss_pred HHHHHHHHHHh--hCCeEEEEecCc-Cc-cchhHHHHHHHH-hCCCEE
Confidence 44444554443 467899999998 43 233455555553 467765
No 92
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.17 E-value=2.2e-09 Score=90.48 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhh----------hhhhHHHHHhhcC-CCceEecCCC
Q psy14904 147 LPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLF----------ANENYIELTKYLN-VTPLGRIPYL 215 (233)
Q Consensus 147 ~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~----------~~~~~~~l~~~~~-~pvlg~IP~~ 215 (233)
....+|+.++..++.++....+.+...++++.++++|++- |+... .+.....+++.+. .++ ..+|.-
T Consensus 208 T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~vi~n~~~-p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v-~~vp~~ 285 (322)
T COG0003 208 TSFRLVSIPEKLSLYETKRAVERLSLYGIPVDAVIVNKIL-PDEADQPFLEARRKIQQKYLKELEETFSDLAV-VKVPLL 285 (322)
T ss_pred CeEEEEecccccchHHHHHHHHHHHHcCCchheeeeeccc-ccccccHHHHHHHHHHHHHHHHHHHhhcccce-EEeccc
Confidence 5566777777777777888888888999999999999987 54321 1123444555444 444 477775
Q ss_pred C
Q psy14904 216 Y 216 (233)
Q Consensus 216 ~ 216 (233)
.
T Consensus 286 ~ 286 (322)
T COG0003 286 A 286 (322)
T ss_pred c
Confidence 5
No 93
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.17 E-value=2e-09 Score=86.97 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=36.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+++++|.+.||||||||++.+||.+++++|++|+++|
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD 38 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCID 38 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 46899999999999999999999999999999999999
No 94
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.15 E-value=9.5e-10 Score=91.53 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=96.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
.-+|.+.|. .|+||||+..-||++|.++|++|++.= ++. ++....+.+..|.... .. +.+.. .
T Consensus 139 p~Vil~vGV-NG~GKTTTIaKLA~~l~~~g~~VllaA---~DT--------FRAaAiEQL~~w~er~-gv-~vI~~---~ 201 (340)
T COG0552 139 PFVILFVGV-NGVGKTTTIAKLAKYLKQQGKSVLLAA---GDT--------FRAAAIEQLEVWGERL-GV-PVISG---K 201 (340)
T ss_pred cEEEEEEec-CCCchHhHHHHHHHHHHHCCCeEEEEe---cch--------HHHHHHHHHHHHHHHh-CC-eEEcc---C
Confidence 568999999 899999999999999999999999863 222 2223444454443210 00 11111 1
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCchHHHHHH-----hCCC-----EEEEEc
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNENSADLAEK-----LGLP-----IILVID 154 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~-----~~~~-----vllV~~ 154 (233)
.+..++ ....++++. .+++||+|||||+|.+..- .-+..++-+. -+.+ +++|.+
T Consensus 202 --~G~DpA----------aVafDAi~~Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlD 266 (340)
T COG0552 202 --EGADPA----------AVAFDAIQAAKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLD 266 (340)
T ss_pred --CCCCcH----------HHHHHHHHHHHHcCCCEEEEeCcccccCc---hhHHHHHHHHHHHhccccCCCCceEEEEEE
Confidence 111111 134555554 3479999999999987532 1123333221 1234 777777
Q ss_pred CCCC--cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 155 LKIG--CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 155 ~~~~--~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
+..| ++++ .+.+. .-+++-|+|++|++ ... . ...+-.+...+++|+.
T Consensus 267 AttGqnal~Q----Ak~F~-eav~l~GiIlTKlD-gtA-K-GG~il~I~~~l~~PI~ 315 (340)
T COG0552 267 ATTGQNALSQ----AKIFN-EAVGLDGIILTKLD-GTA-K-GGIILSIAYELGIPIK 315 (340)
T ss_pred cccChhHHHH----HHHHH-HhcCCceEEEEecc-cCC-C-cceeeeHHHHhCCCEE
Confidence 7653 3333 33332 23568899999998 321 1 2334445556788886
No 95
>PRK14974 cell division protein FtsY; Provisional
Probab=99.14 E-value=4.3e-09 Score=89.40 Aligned_cols=163 Identities=15% Similarity=0.139 Sum_probs=90.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHH---hCCCcccccceeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY---SNSLYEFTKLINPY 82 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~ 82 (233)
.++|+++|. +|+||||++.+||..|.++|++|+++. .+... ......++.+ .|.+ +
T Consensus 140 ~~vi~~~G~-~GvGKTTtiakLA~~l~~~g~~V~li~---~Dt~R--------~~a~eqL~~~a~~lgv~---------v 198 (336)
T PRK14974 140 PVVIVFVGV-NGTGKTTTIAKLAYYLKKNGFSVVIAA---GDTFR--------AGAIEQLEEHAERLGVK---------V 198 (336)
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEec---CCcCc--------HHHHHHHHHHHHHcCCc---------e
Confidence 468889997 999999999999999999999999986 32221 1122333332 2211 1
Q ss_pred eecCCCChhhhhhhcCCCCCHHHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHHHHH---h-CCCEEEEEcCCC
Q psy14904 83 LFKYPISPYTSSNLENRIINTSHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADLAEK---L-GLPIILVIDLKI 157 (233)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~---~-~~~vllV~~~~~ 157 (233)
+.......+ ...+.+.++.. ..+||+|||||+|....+. ....++... . -..+++|.++..
T Consensus 199 -~~~~~g~dp----------~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~---~lm~eL~~i~~~~~pd~~iLVl~a~~ 264 (336)
T PRK14974 199 -IKHKYGADP----------AAVAYDAIEHAKARGIDVVLIDTAGRMHTDA---NLMDELKKIVRVTKPDLVIFVGDALA 264 (336)
T ss_pred -ecccCCCCH----------HHHHHHHHHHHHhCCCCEEEEECCCccCCcH---HHHHHHHHHHHhhCCceEEEeecccc
Confidence 111001000 11234444432 3579999999997754211 112222111 1 235678887754
Q ss_pred CcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 158 GCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
+ +++....+.+. ..+++-|+|+||++ .. ......+.... ..+.|+.
T Consensus 265 g--~d~~~~a~~f~-~~~~~~giIlTKlD-~~-~~~G~~ls~~~-~~~~Pi~ 310 (336)
T PRK14974 265 G--NDAVEQAREFN-EAVGIDGVILTKVD-AD-AKGGAALSIAY-VIGKPIL 310 (336)
T ss_pred c--hhHHHHHHHHH-hcCCCCEEEEeeec-CC-CCccHHHHHHH-HHCcCEE
Confidence 2 23333333332 23567899999999 32 22334444444 3578886
No 96
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.13 E-value=5.7e-09 Score=89.31 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=105.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH--HcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK--KRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPY 82 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~--~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 82 (233)
+.++|++.|+ +||||||+.+-||..+. ..-++|.++- .|.... +..+.++.+..+-. .|+
T Consensus 202 ~~~vi~LVGP-TGVGKTTTlAKLAar~~~~~~~~kVaiIT---tDtYRI--------GA~EQLk~Ya~im~------vp~ 263 (407)
T COG1419 202 QKRVIALVGP-TGVGKTTTLAKLAARYVMLKKKKKVAIIT---TDTYRI--------GAVEQLKTYADIMG------VPL 263 (407)
T ss_pred cCcEEEEECC-CCCcHHHHHHHHHHHHHhhccCcceEEEE---eccchh--------hHHHHHHHHHHHhC------Cce
Confidence 4689999999 99999999999999999 4567999985 333321 23344444432110 011
Q ss_pred eecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHH----hCCCEEEEEcCCCC
Q psy14904 83 LFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEK----LGLPIILVIDLKIG 158 (233)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----~~~~vllV~~~~~~ 158 (233)
... .+...+.+.+..++ +||+|||||+|.-. .+.....++..- ....+.+|.++..
T Consensus 264 ~vv---------------~~~~el~~ai~~l~-~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~~~i~~~Lvlsat~- 323 (407)
T COG1419 264 EVV---------------YSPKELAEAIEALR-DCDVILVDTAGRSQ---YDKEKIEELKELIDVSHSIEVYLVLSATT- 323 (407)
T ss_pred EEe---------------cCHHHHHHHHHHhh-cCCEEEEeCCCCCc---cCHHHHHHHHHHHhccccceEEEEEecCc-
Confidence 111 13456777887774 78999999987632 122233333322 2456777777764
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce----E-ecCCCCCCChh
Q psy14904 159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL----G-RIPYLYNLNIN 221 (233)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl----g-~IP~~~~l~~~ 221 (233)
..++....++.+ ..+++-|+|++|.+ . +.........+.+ .+.|+. | .||+|-....+
T Consensus 324 K~~dlkei~~~f--~~~~i~~~I~TKlD-E-T~s~G~~~s~~~e-~~~PV~YvT~GQ~VPeDI~va~~ 386 (407)
T COG1419 324 KYEDLKEIIKQF--SLFPIDGLIFTKLD-E-TTSLGNLFSLMYE-TRLPVSYVTNGQRVPEDIVVANP 386 (407)
T ss_pred chHHHHHHHHHh--ccCCcceeEEEccc-c-cCchhHHHHHHHH-hCCCeEEEeCCCCCCchhhhcCh
Confidence 223344444444 35678899999999 3 2333455554443 356664 2 27777766655
No 97
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.11 E-value=9.5e-10 Score=76.15 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=28.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++++|.+ |+||||++.+|+..|++.|++|+++|
T Consensus 2 ~~~~g~~-G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG-GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5677775 99999999999999999999997764
No 98
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.06 E-value=3e-09 Score=80.26 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=29.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|. +|+||||++.+|+..+.++|.+|++++
T Consensus 2 i~~~G~-~GsGKTt~~~~l~~~~~~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALRARGKRVAVLA 34 (148)
T ss_pred EEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 556655 999999999999999999999999987
No 99
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.06 E-value=1.8e-08 Score=83.21 Aligned_cols=172 Identities=11% Similarity=0.116 Sum_probs=100.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
...+++.|. +|+||||+...|+..+..+|++|++++ .+.+.. .....++.+.... .+ ++...
T Consensus 75 ~~~i~~~G~-~g~GKTtl~~~l~~~l~~~~~~v~~i~---~D~~ri--------~~~~ql~~~~~~~-----~~-~~~~~ 136 (270)
T PRK06731 75 VQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFIT---TDHSRI--------GTVQQLQDYVKTI-----GF-EVIAV 136 (270)
T ss_pred CCEEEEECC-CCCcHHHHHHHHHHHHHHcCCeEEEEe---cCCCCH--------HHHHHHHHHhhhc-----Cc-eEEec
Confidence 357899998 999999999999999998899999987 332211 1222333332210 01 11110
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHH---HHh-CCCEEEEEcCCCCc
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLA---EKL-GLPIILVIDLKIGC 159 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~---~~~-~~~vllV~~~~~~~ 159 (233)
.+...+.+.+++++ .+||+||||++|.... ......++. ... -..+++|.++...
T Consensus 137 ---------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~~~~~~~LVl~a~~~- 197 (270)
T PRK06731 137 ---------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLTLSASMK- 197 (270)
T ss_pred ---------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcC---CHHHHHHHHHHHhhhCCCeEEEEEcCccC-
Confidence 12345667777665 3799999999987531 111112222 111 1246888877542
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCC
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLN 219 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~ 219 (233)
-+++...++.++ .+++-|+|++|.+ .. ......+.... .++.|+. +. ||+|-...
T Consensus 198 ~~d~~~~~~~f~--~~~~~~~I~TKlD-et-~~~G~~l~~~~-~~~~Pi~~it~Gq~vp~di~~a 257 (270)
T PRK06731 198 SKDMIEIITNFK--DIHIDGIVFTKFD-ET-ASSGELLKIPA-VSSAPIVLMTDGQDVKKNIHIA 257 (270)
T ss_pred HHHHHHHHHHhC--CCCCCEEEEEeec-CC-CCccHHHHHHH-HHCcCEEEEeCCCCCCcchhhC
Confidence 234444555554 3788899999999 32 23334445444 3577775 22 77665444
No 100
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.03 E-value=9e-09 Score=87.06 Aligned_cols=197 Identities=14% Similarity=0.103 Sum_probs=116.4
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCCCCCCc-cchHHH-HHHHHhCCCccc-----
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNNKNKIW-FNEDVN-LLNKYSNSLYEF----- 75 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~~~~~l-~~~d~~-~~~~~~~~~~~~----- 75 (233)
++.+.+++.+.|||+|-||+|.|+|..++.+ +..|++.|.. .+... .++ .+.+.. .+.+....++-.
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~---~~~G~--~~~~l~~~~a~~i~~~~~~peRLDq~ll 176 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLD---LQGGT--AALYLDQDPAFGIAEAVKQPERLDQVLL 176 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcC---CCCcc--hhhhcCCCchhhHHHHhcCHHHhhHHHH
Confidence 3568999999999999999999999999975 8999999832 22110 000 000000 011110000000
Q ss_pred ----ccceee-eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEE
Q psy14904 76 ----TKLINP-YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPII 150 (233)
Q Consensus 76 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vl 150 (233)
.+..+. -.+..|.. + ....+.....+...++.++..||+||+|-| ....+ -...+.... ..++
T Consensus 177 d~~~~~~~~~l~ll~a~~~--~---~~~~d~~~~~~~~Ll~~~~~~~~~vV~Dlp-~~~~~-----~t~~vL~~S-d~iv 244 (366)
T COG4963 177 DSLLTRLASGLKLLAAPTE--L---AKNYDLKTGAVERLLDLLRGSFDFVVVDLP-NIWTD-----WTRQVLSGS-DEIV 244 (366)
T ss_pred HHHHhccCCCceeecCCcc--h---hhhcccccchHHHHHHHhhccCCeEEEcCC-Cccch-----HHHHHHhcC-CeEE
Confidence 000000 01111111 1 111233445667777788889999999987 22111 122333332 3789
Q ss_pred EEEcCCCCcHHHHHHHHHHHHh--CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904 151 LVIDLKIGCINNALLSLEAINS--RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN 221 (233)
Q Consensus 151 lV~~~~~~~~~~~~~~~~~l~~--~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~ 221 (233)
+|++....++..+..-++.+++ .+.+-.-.|+|++. ..... + .+.+.+.+|++-+..+|.++.+.-.
T Consensus 245 iv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~-~~~~~--~-~~dl~~~~~i~~~~~~p~d~~~~~~ 313 (366)
T COG4963 245 IVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVG-VPKRP--E-PSDLEEILGIESLLVLPFDPALFGD 313 (366)
T ss_pred EEecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecC-CCCCC--C-HHHHHHHhCCchhccccCCchhhhh
Confidence 9999998888776666666653 33344668999998 43222 2 6677888999999999999876644
No 101
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.01 E-value=2.7e-08 Score=91.98 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=99.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK-KRG-ISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G-~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
.++|++.|. .|+||||+...||..+. ++| ++|.++. .+.+.. ...+.++.+.... .+ ++.
T Consensus 185 g~Vi~lVGp-nGvGKTTTiaKLA~~~~~~~G~kkV~lit---~Dt~Ri--------gA~eQL~~~a~~~-----gv-pv~ 246 (767)
T PRK14723 185 GGVLALVGP-TGVGKTTTTAKLAARCVAREGADQLALLT---TDSFRI--------GALEQLRIYGRIL-----GV-PVH 246 (767)
T ss_pred CeEEEEECC-CCCcHHHHHHHHHhhHHHHcCCCeEEEec---Ccccch--------HHHHHHHHHHHhC-----CC-Ccc
Confidence 468999999 99999999999999885 566 5999986 333211 1222233322210 00 111
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCCCc
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKIGC 159 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~~~ 159 (233)
.. .+...+.+.+++++ +||+|||||+|.... .......+.... ...+++|.++...
T Consensus 247 ~~---------------~~~~~l~~al~~~~-~~D~VLIDTAGRs~~---d~~l~eel~~l~~~~~p~e~~LVLsAt~~- 306 (767)
T PRK14723 247 AV---------------KDAADLRFALAALG-DKHLVLIDTVGMSQR---DRNVSEQIAMLCGVGRPVRRLLLLNAASH- 306 (767)
T ss_pred cc---------------CCHHHHHHHHHHhc-CCCEEEEeCCCCCcc---CHHHHHHHHHHhccCCCCeEEEEECCCCc-
Confidence 00 12345677777764 789999999975421 111122222211 2458888887642
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCChh
Q psy14904 160 INNALLSLEAINSR-GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLNIN 221 (233)
Q Consensus 160 ~~~~~~~~~~l~~~-~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~~~ 221 (233)
.+.+...++.++.. +.++-|+|++|.+ .. ...-..+..+. .+++|+. +. ||+|-....+
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLD-Et-~~~G~iL~i~~-~~~lPI~yit~GQ~VPdDL~~a~~ 371 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLD-EA-THLGPALDTVI-RHRLPVHYVSTGQKVPEHLELAQA 371 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccC-CC-CCccHHHHHHH-HHCCCeEEEecCCCChhhcccCCH
Confidence 23333444555432 4467899999999 32 23334455444 3477765 32 6665544433
No 102
>PRK13768 GTPase; Provisional
Probab=99.00 E-value=9e-09 Score=84.54 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=33.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|++++.|+|. +|+||||++.+++.+++++|++|+++|
T Consensus 1 ~~~~i~v~G~-~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 1 MMYIVFFLGT-AGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred CcEEEEEECC-CCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 4677888887 999999999999999999999999987
No 103
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.97 E-value=3.5e-09 Score=87.67 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=34.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~ 45 (233)
|++|.|+|. +|+||||++.+|+..|+++| +|+++|...
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 679999999 59999999999999999999 899999443
No 104
>KOG0780|consensus
Probab=98.91 E-value=2e-08 Score=84.84 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=82.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
..+|+++|- .|+||||+|..||.++.++|++++++=. +.. +....+.+.+... .. . .|+.-.
T Consensus 101 psVimfVGL-qG~GKTTtc~KlA~y~kkkG~K~~Lvca---DTF--------RagAfDQLkqnA~-k~----~-iP~ygs 162 (483)
T KOG0780|consen 101 PSVIMFVGL-QGSGKTTTCTKLAYYYKKKGYKVALVCA---DTF--------RAGAFDQLKQNAT-KA----R-VPFYGS 162 (483)
T ss_pred CcEEEEEec-cCCCcceeHHHHHHHHHhcCCceeEEee---ccc--------ccchHHHHHHHhH-hh----C-CeeEec
Confidence 458999998 8999999999999999999999999741 111 1112222333221 00 1 122111
Q ss_pred C-CCChhhhhhhcCCCCCHHHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHHHHHhC-CCEEEEEcCCCCcHHH
Q psy14904 86 Y-PISPYTSSNLENRIINTSHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADLAEKLG-LPIILVIDLKIGCINN 162 (233)
Q Consensus 86 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~-~~vllV~~~~~~~~~~ 162 (233)
. ...|. ....+..++. .++||+||+||.|.....-.-..-.-++..+.. ..+|+|.++..+.
T Consensus 163 yte~dpv------------~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ--- 227 (483)
T KOG0780|consen 163 YTEADPV------------KIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ--- 227 (483)
T ss_pred ccccchH------------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---
Confidence 0 00110 1123333333 378999999998765321000001122222222 4699999987642
Q ss_pred HHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 163 ALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 163 ~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+.......-+..+.+-++|+++.+
T Consensus 228 aae~Qa~aFk~~vdvg~vIlTKlD 251 (483)
T KOG0780|consen 228 AAEAQARAFKETVDVGAVILTKLD 251 (483)
T ss_pred hHHHHHHHHHHhhccceEEEEecc
Confidence 212222223456788999999998
No 105
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.91 E-value=6.7e-08 Score=83.07 Aligned_cols=172 Identities=12% Similarity=0.080 Sum_probs=93.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH-cC-CeeeEEeeeecCcccCCCCCCccchHHHHHHHH---hCCCccccccee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK-RG-ISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY---SNSLYEFTKLIN 80 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~-~G-~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~ 80 (233)
-.++++.|+ +|+||||++..||..+.. +| .+|+++. .+.... ...+.++.+ .|.+
T Consensus 137 g~ii~lvGp-tGvGKTTtiakLA~~~~~~~G~~~V~lit---~D~~R~--------ga~EqL~~~a~~~gv~-------- 196 (374)
T PRK14722 137 GGVFALMGP-TGVGKTTTTAKLAARCVMRFGASKVALLT---TDSYRI--------GGHEQLRIFGKILGVP-------- 196 (374)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEe---cccccc--------cHHHHHHHHHHHcCCc--------
Confidence 458889998 999999999999998764 47 6899886 322211 123333332 2311
Q ss_pred eeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHH--HhC--CCEEEEEcCC
Q psy14904 81 PYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAE--KLG--LPIILVIDLK 156 (233)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~--~~~--~~vllV~~~~ 156 (233)
+.... ....+...+.++ .++|+||||++|.. |... ...-.+.. ..+ ..+++|.++.
T Consensus 197 -~~~~~---------------~~~~l~~~l~~l-~~~DlVLIDTaG~~--~~d~-~l~e~La~L~~~~~~~~~lLVLsAt 256 (374)
T PRK14722 197 -VHAVK---------------DGGDLQLALAEL-RNKHMVLIDTIGMS--QRDR-TVSDQIAMLHGADTPVQRLLLLNAT 256 (374)
T ss_pred -eEecC---------------CcccHHHHHHHh-cCCCEEEEcCCCCC--cccH-HHHHHHHHHhccCCCCeEEEEecCc
Confidence 11000 112244555665 46899999998653 2111 11111111 112 2457777776
Q ss_pred CCcHHHHHHHHHHHHhCC-------CcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCChh
Q psy14904 157 IGCINNALLSLEAINSRG-------LKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLNIN 221 (233)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~-------~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~~~ 221 (233)
.+. +.+...++..+... .++-|+|++|.+ . .......+..+.+ .+.|+. +. ||++-....+
T Consensus 257 s~~-~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD-E-t~~~G~~l~~~~~-~~lPi~yvt~Gq~VPedl~~a~~ 329 (374)
T PRK14722 257 SHG-DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD-E-ASNLGGVLDTVIR-YKLPVHYVSTGQKVPENLYVATK 329 (374)
T ss_pred cCh-HHHHHHHHHHHHhhcccccccCCCCEEEEeccc-c-CCCccHHHHHHHH-HCcCeEEEecCCCCCcccccCCH
Confidence 432 22222333332221 247799999999 3 2233455555543 366665 32 7877665544
No 106
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.85 E-value=2.5e-08 Score=83.20 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=32.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-G-ISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G-~~Vl~~d 42 (233)
.++|+++|+ +|+||||++.+||.+++.+ | ++|.+++
T Consensus 194 ~~vi~~vGp-tGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGP-TGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 458999988 9999999999999999986 5 9999998
No 107
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=98.82 E-value=2.5e-08 Score=80.18 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=39.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY 49 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~ 49 (233)
|++|.|+|. .|+||||++..|+..|.++|++|.++|+..++.+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~~~~~~d 43 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKHTHHEFD 43 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEecccCCC
Confidence 679999999 6999999999999999999999999998776555
No 108
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.82 E-value=1.4e-08 Score=73.40 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|.+++ |||+||||++.+|+.+|+++|++|+++|
T Consensus 2 i~~~G-kgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITG-KGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEEC-CCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 55666 5999999999999999999999999998
No 109
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.81 E-value=1.5e-08 Score=76.93 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=39.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecC
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASG 47 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~ 47 (233)
||+++.|+|. .++||||+.-.|...|.++|+||.++|...++
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEEec-CCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 6899999999 89999999999999999999999999977666
No 110
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.79 E-value=6.7e-07 Score=73.59 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=81.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE--EeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG--MKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPY 82 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~--~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 82 (233)
+..+|.|||. ||+||||+.-.|...|.++|+||.+ +||-. +... ..+. .|-..++..... .+.
T Consensus 50 ~a~viGITG~-PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS--p~TG---GsiL-GDRiRM~~~~~~-----~~v--- 114 (323)
T COG1703 50 NAHVIGITGV-PGAGKSTLIEALGRELRERGHRVAVLAVDPSS--PFTG---GSIL-GDRIRMQRLAVD-----PGV--- 114 (323)
T ss_pred CCcEEEecCC-CCCchHHHHHHHHHHHHHCCcEEEEEEECCCC--CCCC---cccc-ccHhhHHhhccC-----CCe---
Confidence 4568999999 9999999999999999999999987 46532 1110 0011 132223332210 111
Q ss_pred eec-CCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcH
Q psy14904 83 LFK-YPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCI 160 (233)
Q Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~ 160 (233)
+++ .|....+ .-.....++.+.-+. .+||+|||||.|- +.+..+++...| .+++|+.++.+.-
T Consensus 115 FiRs~~srG~l-------GGlS~at~~~i~~ldAaG~DvIIVETVGv-------GQsev~I~~~aD-t~~~v~~pg~GD~ 179 (323)
T COG1703 115 FIRSSPSRGTL-------GGLSRATREAIKLLDAAGYDVIIVETVGV-------GQSEVDIANMAD-TFLVVMIPGAGDD 179 (323)
T ss_pred EEeecCCCccc-------hhhhHHHHHHHHHHHhcCCCEEEEEecCC-------CcchhHHhhhcc-eEEEEecCCCCcH
Confidence 111 1111000 011233444444443 5899999999632 345677777766 5677777776542
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 161 NNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 161 ~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
-+.... ..++ .+ . -+|+||.+
T Consensus 180 ~Q~iK~-GimE-ia-D--i~vINKaD 200 (323)
T COG1703 180 LQGIKA-GIME-IA-D--IIVINKAD 200 (323)
T ss_pred HHHHHh-hhhh-hh-h--eeeEeccC
Confidence 222111 1111 11 2 15899998
No 111
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.79 E-value=2.7e-07 Score=81.83 Aligned_cols=170 Identities=12% Similarity=0.111 Sum_probs=90.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK-KRG-ISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G-~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
.++|++.|. .|+||||++..||..+. ++| ++|+++. ++.+.. +- .+...++....|++ ..
T Consensus 256 g~Vi~LvGp-nGvGKTTTiaKLA~~~~~~~G~~kV~LI~---~Dt~Ri----gA-~EQLr~~AeilGVp---------v~ 317 (484)
T PRK06995 256 GGVFALMGP-TGVGKTTTTAKLAARCVMRHGASKVALLT---TDSYRI----GG-HEQLRIYGKILGVP---------VH 317 (484)
T ss_pred CcEEEEECC-CCccHHHHHHHHHHHHHHhcCCCeEEEEe---CCccch----hH-HHHHHHHHHHhCCC---------ee
Confidence 468999999 99999999999999985 456 5899887 333221 10 01222222222211 10
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhC-----CCEEEEEcCCCC
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLG-----LPIILVIDLKIG 158 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~-----~~vllV~~~~~~ 158 (233)
... ....+...+.++ +++|+++||++|.... .. ...+.+..+. ...++|.+...+
T Consensus 318 ~~~---------------~~~Dl~~aL~~L-~d~d~VLIDTaGr~~~---d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 318 AVK---------------DAADLRLALSEL-RNKHIVLIDTIGMSQR---DR-MVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred ccC---------------CchhHHHHHHhc-cCCCeEEeCCCCcChh---hH-HHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 000 011223334444 4689999999754311 10 1122222221 226777777543
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCC
Q psy14904 159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLN 219 (233)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~ 219 (233)
. +.+....+..+. ..+-|+|+||++ ... .....+..+. .+++|+. +. ||+|-...
T Consensus 378 ~-~~l~~i~~~f~~--~~~~g~IlTKlD-et~-~~G~~l~i~~-~~~lPI~yvt~GQ~VPeDL~~a 437 (484)
T PRK06995 378 G-DTLNEVVQAYRG--PGLAGCILTKLD-EAA-SLGGALDVVI-RYKLPLHYVSNGQRVPEDLHLA 437 (484)
T ss_pred H-HHHHHHHHHhcc--CCCCEEEEeCCC-Ccc-cchHHHHHHH-HHCCCeEEEecCCCChhhhccC
Confidence 3 334444444433 556799999998 432 2334455444 3477765 22 66655444
No 112
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=98.72 E-value=5.1e-08 Score=84.60 Aligned_cols=43 Identities=26% Similarity=0.242 Sum_probs=38.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY 49 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~ 49 (233)
|++|.|+|. .|+||||++..|...|.++|+||.++|...++.+
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L~~rG~rVavIKH~hH~fd 43 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAIAARGFSVSTVKHSHHDVD 43 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEEeccCcccC
Confidence 689999999 4999999999999999999999999997666554
No 113
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.70 E-value=5.8e-07 Score=75.69 Aligned_cols=37 Identities=32% Similarity=0.374 Sum_probs=34.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+++|.|+|. +|+||||++..|+..+.++|++|.+++
T Consensus 33 ~~~~i~i~G~-~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 33 NAHRVGITGT-PGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5678999977 999999999999999999999999987
No 114
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.69 E-value=2.7e-06 Score=72.25 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=33.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...+|.|+|. +|+||||++..|+..|..+|++|.++.
T Consensus 55 ~~~~igi~G~-~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 55 NALRIGITGV-PGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CcEEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3458999999 999999999999999999999999975
No 115
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.60 E-value=3.5e-07 Score=69.57 Aligned_cols=40 Identities=28% Similarity=0.286 Sum_probs=35.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCc
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA 48 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~ 48 (233)
+|.|+|. .|+||||++..|+..|.++|++|.++|+..++.
T Consensus 1 vi~i~G~-~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~~ 40 (155)
T TIGR00176 1 VLQIVGP-KNSGKTTLIERLVKALKARGYRVATIKHDHHDF 40 (155)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 4778888 699999999999999999999999999765544
No 116
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.60 E-value=6.5e-07 Score=69.01 Aligned_cols=45 Identities=22% Similarity=0.142 Sum_probs=38.1
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeec
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIAS 46 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~ 46 (233)
|=.++++++.|+|. .|+||||+...|...|..+|++|..+|...+
T Consensus 1 ~~~~~~~ii~ivG~-sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 1 MNKTMIPLLAIAAW-SGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred CCCCCceEEEEECC-CCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 33456778888887 9999999999999999999999999994433
No 117
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=98.55 E-value=4.3e-06 Score=69.91 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=52.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch----------hhhhhhHHHHHhhc-CCCceEecCCCC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT----------LFANENYIELTKYL-NVTPLGRIPYLY 216 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~----------~~~~~~~~~l~~~~-~~pvlg~IP~~~ 216 (233)
.+++|+.++..++.++...++.++..+.++.|+|+|++. +.. ..++..++.+++.+ +.|++ .+|+.+
T Consensus 191 ~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~-~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~-~vp~~~ 268 (284)
T TIGR00345 191 SFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVL-PENAQDEFCQARWELQQKYLKEIPEKFADLPVA-EVPLQK 268 (284)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EecCCC
Confidence 389999999999999999999999899999999999987 431 12345566677665 46776 778755
Q ss_pred C
Q psy14904 217 N 217 (233)
Q Consensus 217 ~ 217 (233)
.
T Consensus 269 ~ 269 (284)
T TIGR00345 269 E 269 (284)
T ss_pred C
Confidence 3
No 118
>KOG0781|consensus
Probab=98.54 E-value=1.6e-06 Score=75.36 Aligned_cols=149 Identities=11% Similarity=0.092 Sum_probs=87.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHh----CCCcccccceeeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS----NSLYEFTKLINPYL 83 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~ 83 (233)
+|.++|- .||||||--+.+|.+|.+.+.||++.- |++.. .+.++.++.+. .+.. ..+..
T Consensus 380 Vi~fvGV-NGVGKSTNLAKIayWLlqNkfrVLIAA---CDTFR--------sGAvEQLrtHv~rl~~l~~---~~v~l-- 442 (587)
T KOG0781|consen 380 VISFVGV-NGVGKSTNLAKIAYWLLQNKFRVLIAA---CDTFR--------SGAVEQLRTHVERLSALHG---TMVEL-- 442 (587)
T ss_pred EEEEEee-cCccccchHHHHHHHHHhCCceEEEEe---ccchh--------hhHHHHHHHHHHHHHHhcc---chhHH--
Confidence 7888888 899999999999999999999999853 32321 12333333322 1110 01111
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCCC
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKIG 158 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~~ 158 (233)
|.. .. +.+ .....++++++.+ .+||+|||||+|.... ..-+...+++-. -+.+++|..+-.+
T Consensus 443 fek--------GY-gkd-~a~vak~AI~~a~~~gfDVvLiDTAGR~~~---~~~lm~~l~k~~~~~~pd~i~~vgealvg 509 (587)
T KOG0781|consen 443 FEK--------GY-GKD-AAGVAKEAIQEARNQGFDVVLIDTAGRMHN---NAPLMTSLAKLIKVNKPDLILFVGEALVG 509 (587)
T ss_pred Hhh--------hc-CCC-hHHHHHHHHHHHHhcCCCEEEEeccccccC---ChhHHHHHHHHHhcCCCceEEEehhhhhC
Confidence 110 00 111 1223466666544 6899999999988753 111233333321 1357777766443
Q ss_pred --cHHHHHHHHHHHHhC--CCcEEEEEEcccC
Q psy14904 159 --CINNALLSLEAINSR--GLKLIGWVANHTQ 186 (233)
Q Consensus 159 --~~~~~~~~~~~l~~~--~~~i~GiVlN~~~ 186 (233)
++.++..--+.+.+. .-.|=|+|+++++
T Consensus 510 ~dsv~q~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 510 NDSVDQLKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred cHHHHHHHHHHHHHhcCCCccccceEEEEecc
Confidence 566665555555433 2357899999998
No 119
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=98.51 E-value=3.5e-06 Score=70.15 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=93.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
..++|++.|+.--+||-|++..|..++.++|+++.++= +| .+.++..-.|... +.+.
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fva---TG-------------QTGimia~~Gv~i---Dav~---- 167 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVA---TG-------------QTGIMIAGYGVPI---DAVP---- 167 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE----S-------------HHHHHCHSEC--G---GGSB----
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEe---cC-------------CceEEEecCCeec---cchh----
Confidence 57899999999999999999999999999999998864 21 2222332223211 1110
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC------
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG------ 158 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~------ 158 (233)
..+.+ ..+....-+..+++|+++|||-+++..|.-...+..=+....-..++++..++..
T Consensus 168 -----~DFva---------GavE~~v~~~~~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p 233 (301)
T PF07755_consen 168 -----SDFVA---------GAVEALVPEAAEEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFP 233 (301)
T ss_dssp -----GGGHH---------HHHHHHHHHHCCC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTST
T ss_pred -----hhhHH---------HHHHHHHHhhCcCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCC
Confidence 11111 1233344444435599999999999877532323333333333457777777422
Q ss_pred -----cHHHHHHHHHHHH--hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904 159 -----CINNALLSLEAIN--SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP 213 (233)
Q Consensus 159 -----~~~~~~~~~~~l~--~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP 213 (233)
++.+....++.+. ..+.+++|+-+|-.+ -.....+...+.+++.+|+|+...+.
T Consensus 234 ~~~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~-l~~~e~~~~~~~~~~e~glPv~Dp~r 294 (301)
T PF07755_consen 234 HYPIPPLEEEIELIEALAGTKPPAKVVGISLNTSG-LSEEEAKAAIERIEEELGLPVTDPLR 294 (301)
T ss_dssp TSC---HHHHHHHHHHCCCGC---EEEEEECC-TT-S-HHHHHHHHHHHHHHH-S-EE-HHH
T ss_pred cCCCCCHHHHHHHHHHhhccCCCccEEEEEEECCC-CCHHHHHHHHHHHHHHHCCCeeeccc
Confidence 3444444444442 245669999999876 32333456677888889999975543
No 120
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=98.48 E-value=1.2e-06 Score=66.83 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=37.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY 49 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~ 49 (233)
|++|.|+|. .|+||||++..|...|..+|++|.++|...++.+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~ 43 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFD 43 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEEecCCccc
Confidence 578999999 6999999999999999999999999996555443
No 121
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=98.47 E-value=4.8e-07 Score=60.32 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=44.2
Q ss_pred CeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 118 DVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 118 D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
||+|||.|||.++- .++..+... ....++|+.+..-+...+.+.++.+++.+++++|+|-|+..
T Consensus 2 D~LiiD~PPGTgD~---~l~~~~~~~--~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~ 65 (81)
T PF10609_consen 2 DYLIIDLPPGTGDE---HLTLMQYLP--IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY 65 (81)
T ss_dssp CEEEEE--SCSSSH---HHHHHHHH----SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred CEEEEeCCCCCCcH---HHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 89999999997641 123333333 24689999999889999999999999999999999999964
No 122
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.41 E-value=2.1e-06 Score=69.67 Aligned_cols=125 Identities=21% Similarity=0.255 Sum_probs=64.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE--EeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG--MKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPY 82 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~--~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 82 (233)
+..+|.|||+ +|+||||+.-.|...|.++|++|.+ +||-. +... ..+- .|-..+.....-+ . -.+.+.
T Consensus 28 ~a~~iGiTG~-PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS--p~tG---GAlL-GDRiRM~~~~~d~-~--vfIRS~ 97 (266)
T PF03308_consen 28 RAHVIGITGP-PGAGKSTLIDALIRELRERGKRVAVLAVDPSS--PFTG---GALL-GDRIRMQELSRDP-G--VFIRSM 97 (266)
T ss_dssp -SEEEEEEE--TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG--GCC------SS---GGGCHHHHTST-T--EEEEEE
T ss_pred CceEEEeeCC-CCCcHHHHHHHHHHHHhhcCCceEEEEECCCC--CCCC---Cccc-ccHHHhcCcCCCC-C--EEEeec
Confidence 4578999999 9999999999999999999999987 56532 1110 0010 1211123332211 0 011221
Q ss_pred eecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC
Q psy14904 83 LFKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG 158 (233)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~ 158 (233)
..+. ++. -......+.+.-+. .+||+|||||.|- +.+..+++...| .+++|..++.+
T Consensus 98 atRG----~lG-------Gls~~t~~~v~ll~aaG~D~IiiETVGv-------GQsE~~I~~~aD-~~v~v~~Pg~G 155 (266)
T PF03308_consen 98 ATRG----SLG-------GLSRATRDAVRLLDAAGFDVIIIETVGV-------GQSEVDIADMAD-TVVLVLVPGLG 155 (266)
T ss_dssp ---S----SHH-------HHHHHHHHHHHHHHHTT-SEEEEEEESS-------STHHHHHHTTSS-EEEEEEESSTC
T ss_pred CcCC----CCC-------CccHhHHHHHHHHHHcCCCEEEEeCCCC-------CccHHHHHHhcC-eEEEEecCCCc
Confidence 1110 110 01223444444444 5899999999641 235667766655 56777777654
No 123
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=98.39 E-value=2.5e-06 Score=78.07 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=66.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+|++|.|+|. .|+||||+...|...|.++|+||.++|...++.+... + ..|...++++ |-.... -.++..+
T Consensus 9 ~~~vi~ivG~-s~sGKTTlie~li~~L~~~G~rVavIKh~~h~~d~d~--~---gkDs~r~~~a-GA~~v~--i~s~~~~ 79 (597)
T PRK14491 9 SIPLLGFCAY-SGTGKTTLLEQLIPELNQRGLRLAVIKHAHHNFDVDQ--P---GKDSYRLRKA-GASQML--VASRVRW 79 (597)
T ss_pred CccEEEEEcC-CCCCHHHHHHHHHHHHHhCCceEEEEEcCCcCCCCCC--C---CchHHHHHHc-CCcEEE--EEcCCeE
Confidence 4789999998 9999999999999999999999999996655554211 1 1466555543 311100 0000000
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCc
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVP 131 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p 131 (233)
. +. .+........+.+.+.++. .++|+|||||-.....|
T Consensus 80 a------~~--~~~~~~~~~~l~~~l~~l~~~~~D~vlvEG~k~~~~P 119 (597)
T PRK14491 80 A------LM--TETPRDGEPELPHLLKQIDADKVDIVLVEGFKKLALP 119 (597)
T ss_pred E------EE--EEcCcCCCcCHHHHHHhcCcCCCCEEEEcCCCCCCCC
Confidence 0 00 0000001124566666664 47999999997654333
No 124
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.8e-05 Score=65.78 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=105.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+.+++++.||.--+||-|++.-|..++..+|+++.++- +|.- ++ +. .+ +.+ ..
T Consensus 147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fva---Tgqt------gi-------l~--~~------~gv---vv 199 (339)
T COG3367 147 DAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVA---TGQT------GI-------LI--AD------DGV---VV 199 (339)
T ss_pred CCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEe---cCce------ee-------EE--ec------Cce---Ee
Confidence 46799999999999999999999999999999998874 2221 11 00 00 001 00
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC------
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG------ 158 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~------ 158 (233)
. .....+++. ..+.+.-.+++ +++|+|+|||-+++..|.- ..+..-+-...-+.++++.++...
T Consensus 200 d-av~~DfaAG------ave~~v~~~~e--~~~Dii~VEGQgsl~HP~y-~vtl~il~gs~PDavvL~H~P~r~~~~g~P 269 (339)
T COG3367 200 D-AVVMDFAAG------AVESAVYEAEE--KNPDIIFVEGQGSLTHPAY-GVTLGILHGSAPDAVVLCHDPNRKYRDGFP 269 (339)
T ss_pred c-chhHHHHHH------HHHHHHHHhhh--cCCCEEEEeccccccCCCc-ccchhhhcCCCCCeEEEEecCCCccccCCC
Confidence 0 000111111 12233333333 5999999999999987753 223332322222457777777632
Q ss_pred ----cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 159 ----CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 159 ----~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
.+.+.....+.+ .+.+++|+.+|--+ =+....++..+.++..+|+|+...+.+..++.
T Consensus 270 ~~ip~leevi~l~e~l--~~a~Vvgi~lNtr~-~dE~~are~~a~l~~efglP~~Dp~~~~~d~~ 331 (339)
T COG3367 270 EPIPPLEEVIALYELL--SNAKVVGIALNTRN-LDEEEARELCAKLEAEFGLPVTDPLRFGEDVL 331 (339)
T ss_pred CcCCCHHHHHHHHHHc--cCCcEEEEEecccc-cChHHHHHHHHHHhhccCCccccccccchHHH
Confidence 233333333333 45899999998654 22223356667777788999987777665543
No 125
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.38 E-value=3.8e-06 Score=62.76 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=31.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeec
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIAS 46 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~ 46 (233)
++|.|+|. .|+||||++..|...|.++|++|++++...+
T Consensus 1 pvv~VvG~-~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGP-KNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 57999999 6999999999999999999999998874444
No 126
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.37 E-value=2.1e-06 Score=74.27 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=38.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCc
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA 48 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~ 48 (233)
++++|.|+|. +|+||||+...|...|.++|++|.++|...++.
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~~ 246 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELIARGYRIGLIKHSHHRV 246 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHHHcCCEEEEEEECCccc
Confidence 4789999998 999999999999999999999999999655543
No 127
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.28 E-value=1.5e-06 Score=70.67 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=69.1
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCCC
Q psy14904 11 ITGTNTNIGKTIISCALLSEFKKRGISCIGMK--PIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPI 88 (233)
Q Consensus 11 i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (233)
|+|+ .|+||||.+.++...+...|++|.++. |-.....+. +..--.|.-...+. +. ....
T Consensus 1 ViGp-aGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~---~~iDird~i~~~ev----------m~----~~~L 62 (238)
T PF03029_consen 1 VIGP-AGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYP---PDIDIRDLISVEEV----------ME----EYGL 62 (238)
T ss_dssp -EES-TTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS-----SEEGGGT--HHHH----------HT----T-T-
T ss_pred CCCC-CCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccC---chHHHHhhhhhhhh----------hh----hcCc
Confidence 5677 899999999999999999999999985 322111110 00000011001111 10 1112
Q ss_pred Chhhh--hhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCC-Cc--
Q psy14904 89 SPYTS--SNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKI-GC-- 159 (233)
Q Consensus 89 ~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~-~~-- 159 (233)
+|+-+ ...+--....+++.+.+++. ++ +|+|+||||-+-- ....-....++..+ ..-++.++++.. ..
T Consensus 63 GPNGal~~~me~l~~~~d~l~~~i~~~-~~-~y~l~DtPGQiEl-f~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~ 139 (238)
T PF03029_consen 63 GPNGALIYCMEYLEENIDWLDEEIEKY-ED-DYLLFDTPGQIEL-FTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPS 139 (238)
T ss_dssp -HHHHHHHHHHHHGGGHHHHHHHHHHH-H--SEEEEE--SSHHH-HHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhc-CC-cEEEEeCCCCEEE-EEechhHHHHHHHHhhhcceEEEEEEecccccChh
Confidence 23211 11111112346777777776 33 9999999986510 00011122222222 123455555442 22
Q ss_pred --HHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 160 --INNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 160 --~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+...+.+...+-+.+++.+ .|+||++
T Consensus 140 ~f~s~~L~s~s~~~~~~lP~v-nvlsK~D 167 (238)
T PF03029_consen 140 KFVSSLLLSLSIMLRLELPHV-NVLSKID 167 (238)
T ss_dssp HHHHHHHHHHHHHHHHTSEEE-EEE--GG
T ss_pred hHHHHHHHHHHHHhhCCCCEE-EeeeccC
Confidence 2333444444456788855 6799998
No 128
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=8.4e-05 Score=65.13 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=85.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH-cC-CeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK-RG-ISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~-~G-~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
..++++.|. .|+||||+...||..+.. .| .++.++- .+.... +.. +....+....|++ ..
T Consensus 191 g~vi~lvGp-nG~GKTTtlakLA~~~~~~~~~~~v~~i~---~d~~ri----gal-EQL~~~a~ilGvp---------~~ 252 (420)
T PRK14721 191 GGVYALIGP-TGVGKTTTTAKLAARAVIRHGADKVALLT---TDSYRI----GGH-EQLRIYGKLLGVS---------VR 252 (420)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEe---cCCcch----hHH-HHHHHHHHHcCCc---------ee
Confidence 468999999 999999999999986543 33 6777764 212111 100 0111122222221 10
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCCCc
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKIGC 159 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~~~ 159 (233)
.. .....+...+..+ .++|+|+||++ |...- .......+.... ...+++|.++...
T Consensus 253 ~v---------------~~~~dl~~al~~l-~~~d~VLIDTa-Grsqr--d~~~~~~l~~l~~~~~~~~~~LVl~at~~- 312 (420)
T PRK14721 253 SI---------------KDIADLQLMLHEL-RGKHMVLIDTV-GMSQR--DQMLAEQIAMLSQCGTQVKHLLLLNATSS- 312 (420)
T ss_pred cC---------------CCHHHHHHHHHHh-cCCCEEEecCC-CCCcc--hHHHHHHHHHHhccCCCceEEEEEcCCCC-
Confidence 00 0122344555554 57899999996 43321 111111221111 2357788887642
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
-+.+...++.. ..+++-|+|++|.+ . .......+..+.+ .+.|+.
T Consensus 313 ~~~~~~~~~~f--~~~~~~~~I~TKlD-E-t~~~G~~l~~~~~-~~lPi~ 357 (420)
T PRK14721 313 GDTLDEVISAY--QGHGIHGCIITKVD-E-AASLGIALDAVIR-RKLVLH 357 (420)
T ss_pred HHHHHHHHHHh--cCCCCCEEEEEeee-C-CCCccHHHHHHHH-hCCCEE
Confidence 23333444444 35778899999999 3 2233445555553 477765
No 129
>KOG1532|consensus
Probab=98.20 E-value=6.8e-05 Score=61.23 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=86.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK--PIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
..+|.|.|- .|+||||.+..|-..+.+++.+.-++. |......... .+--.|+.-.+.. +..|.
T Consensus 19 p~~ilVvGM-AGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~a---niDIRDtVkYkEv----------MkqY~ 84 (366)
T KOG1532|consen 19 PVIILVVGM-AGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPA---NIDIRDTVKYKEV----------MKQYQ 84 (366)
T ss_pred CcEEEEEec-CCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCcc---CCchhhhhhHHHH----------HHHhC
Confidence 456777777 899999999999999998887766654 3221111100 0000122112111 11111
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccC---ccCCCCchHHHHHHhCCCEEEEEcCCC-C-
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSV---PFHDNENSADLAEKLGLPIILVIDLKI-G- 158 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~---p~~~~~~~~~l~~~~~~~vllV~~~~~-~- 158 (233)
+. |-+.-..+ +.......+.+.+.+++..+.+|++|||+||-+-. ........-.++.....-++.|++... .
T Consensus 85 LG-PNGgI~Ts-LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~ 162 (366)
T KOG1532|consen 85 LG-PNGGIVTS-LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS 162 (366)
T ss_pred CC-CCcchhhh-HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC
Confidence 11 00000000 00000124667788888888999999999986621 111122233344444222333444332 1
Q ss_pred ---cHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 159 ---CINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 159 ---~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
-.+..+-+...+-+.+++++ +++|+.+
T Consensus 163 p~tFMSNMlYAcSilyktklp~i-vvfNK~D 192 (366)
T KOG1532|consen 163 PTTFMSNMLYACSILYKTKLPFI-VVFNKTD 192 (366)
T ss_pred chhHHHHHHHHHHHHHhccCCeE-EEEeccc
Confidence 13445556666678888955 7899998
No 130
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=98.02 E-value=0.00015 Score=58.43 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=106.2
Q ss_pred eeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeec-CcccCC-C---------CCCccchHHHHHHHHhCCC
Q psy14904 7 LHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK--PIAS-GAYLNN-K---------NKIWFNEDVNLLNKYSNSL 72 (233)
Q Consensus 7 ~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~-~~~~~~-~---------~~~l~~~d~~~~~~~~~~~ 72 (233)
|-|+||| -=.|.||=.+|+.|+..|..+|++|..+| |-.. ++.... . ..+-.+-|...+.++.+..
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 3567776 45789999999999999999999999976 3210 110000 0 0011111221122222221
Q ss_pred cccccceee-eeecCCCChhhhhhhcCCCC---------CHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchH-
Q psy14904 73 YEFTKLINP-YLFKYPISPYTSSNLENRII---------NTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSA- 139 (233)
Q Consensus 73 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~- 139 (233)
.....++.. -.+. .-+..++.|..+ --+.+++++.+++ .++|++|+|-.|...+. +..-..
T Consensus 81 l~~~~niTtGkiy~----~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDi--Es~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYS----SVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDI--ESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHH----HHHHHhhccCccCceEEECcCccHHHHHHHHHhhccCCCCEEEEEeCCccccc--cccHHHH
Confidence 110011100 0000 000113333211 1356777777765 48999999987665431 111122
Q ss_pred ---HHHHHhC-CCEEEEEcC--------CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCC
Q psy14904 140 ---DLAEKLG-LPIILVIDL--------KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVT 207 (233)
Q Consensus 140 ---~l~~~~~-~~vllV~~~--------~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~p 207 (233)
++....+ ..++++.-. +.--.+=+..+++.+++.|+...++|+|.-+ + ..+++.++++...++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~-p---L~e~~keKIAlFcnVp 230 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEK-P---LPPEIREKIALFCDVP 230 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCC-C---CchHHHHHHHHhcCCC
Confidence 2222222 112222211 1111122566889999999999999999843 2 3356778888888999
Q ss_pred ceEecCCCC
Q psy14904 208 PLGRIPYLY 216 (233)
Q Consensus 208 vlg~IP~~~ 216 (233)
+.+.+|...
T Consensus 231 ve~VI~~~d 239 (255)
T cd03113 231 PEAVISAPD 239 (255)
T ss_pred HHHeeecCC
Confidence 988877644
No 131
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.01 E-value=0.00015 Score=60.07 Aligned_cols=94 Identities=10% Similarity=0.055 Sum_probs=58.6
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++++.+|||||.... .. ......... .-+++|.++..+.........+.++..+.+.+ +++||++ ......+.
T Consensus 63 ~~~i~liDtPG~~~f--~~--~~~~~l~~a-D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D-~~~~~~~~ 135 (268)
T cd04170 63 GHKINLIDTPGYADF--VG--ETRAALRAA-DAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMD-RERADFDK 135 (268)
T ss_pred CEEEEEEECcCHHHH--HH--HHHHHHHHC-CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCc-cCCCCHHH
Confidence 678999999976320 00 111222222 35777887766543344445556666777744 7899998 43334456
Q ss_pred hHHHHHhhcCCCceE-ecCCCC
Q psy14904 196 NYIELTKYLNVTPLG-RIPYLY 216 (233)
Q Consensus 196 ~~~~l~~~~~~pvlg-~IP~~~ 216 (233)
..+.+++.++.+++. .+|...
T Consensus 136 ~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 136 TLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHhCCCeEEEEecccC
Confidence 778888888887774 588765
No 132
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.99 E-value=0.00012 Score=56.98 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=61.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
+..|-|.|+ .|+|||++...+...|..+ |+++++. .+.. ...|...+++..|. .+....-.
T Consensus 13 ~~~i~v~Gp-~GSGKTaLie~~~~~L~~~-~~~aVI~---~Di~--------t~~Da~~l~~~~g~------~i~~v~TG 73 (202)
T COG0378 13 MLRIGVGGP-PGSGKTALIEKTLRALKDE-YKIAVIT---GDIY--------TKEDADRLRKLPGE------PIIGVETG 73 (202)
T ss_pred eEEEEecCC-CCcCHHHHHHHHHHHHHhh-CCeEEEe---ceee--------chhhHHHHHhCCCC------eeEEeccC
Confidence 467888888 9999999999999999888 9999987 2222 12466666653221 11111111
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhhcC---CCeEEEeccCcccCccC
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLSNL---TDVIILEGIGGFSVPFH 133 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~D~vlID~~~g~~~p~~ 133 (233)
.. -..+..-..+.++++... .|+++||+.|.+..|..
T Consensus 74 ~~-----------CH~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~~~s 113 (202)
T COG0378 74 KG-----------CHLDASMNLEAIEELVLDFPDLDLLFIESVGNLVCPFS 113 (202)
T ss_pred Cc-----------cCCcHHHHHHHHHHHhhcCCcCCEEEEecCcceecccC
Confidence 00 011223345555555433 79999999987766654
No 133
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.89 E-value=6.9e-05 Score=64.36 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=34.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
..+++|.|. -++||||++.-|+-.+-++|++|.++|.+
T Consensus 73 ~~~vmvvG~-vDSGKSTLt~~LaN~~l~rG~~v~iiDaD 110 (398)
T COG1341 73 VGVVMVVGP-VDSGKSTLTTYLANKLLARGRKVAIIDAD 110 (398)
T ss_pred CcEEEEECC-cCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence 457999999 89999999999999999999999999943
No 134
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00027 Score=60.90 Aligned_cols=144 Identities=16% Similarity=0.231 Sum_probs=86.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCCC
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPI 88 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (233)
+.+.+..+|+||||+-+.++..+++++ +|+|+- |-... ..+..-++.+++.. +++ +.+.+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs----GEES~--------~QiklRA~RL~~~~---~~l--~l~aE-- 154 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS----GEESL--------QQIKLRADRLGLPT---NNL--YLLAE-- 154 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe----CCcCH--------HHHHHHHHHhCCCc---cce--EEehh--
Confidence 344455599999999999999999999 999984 33211 12222233344321 222 22221
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCC------------CCchHHHHHHhCCCEEEEEcCC
Q psy14904 89 SPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHD------------NENSADLAEKLGLPIILVIDLK 156 (233)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~------------~~~~~~l~~~~~~~vllV~~~~ 156 (233)
.+.+.+.+.+++ .++|++|||+.-.++.|-.. ......+|+..+.++++|..-.
T Consensus 155 ------------t~~e~I~~~l~~--~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVT 220 (456)
T COG1066 155 ------------TNLEDIIAELEQ--EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVT 220 (456)
T ss_pred ------------cCHHHHHHHHHh--cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEc
Confidence 245677777776 68999999987665544211 1233456777788888876533
Q ss_pred C-C------cHHHHHHHHHHHH---hCCCcEEEEEEcccC
Q psy14904 157 I-G------CINNALLSLEAIN---SRGLKLIGWVANHTQ 186 (233)
Q Consensus 157 ~-~------~~~~~~~~~~~l~---~~~~~i~GiVlN~~~ 186 (233)
. + -++|...++=+++ ....+++..|=||+.
T Consensus 221 KeG~IAGPrvLEHmVDtVlyFEGd~~~~~RiLR~vKNRFG 260 (456)
T COG1066 221 KEGAIAGPRVLEHMVDTVLYFEGDRHSRYRILRSVKNRFG 260 (456)
T ss_pred ccccccCchheeeeeeEEEEEeccCCCceeeeehhcccCC
Confidence 2 2 2344444433333 356777777888876
No 135
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=97.82 E-value=3.3e-05 Score=68.85 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=34.8
Q ss_pred CceeEEEEeCCC---CCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITGTNT---NIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~~kg---gvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
..|+|.|||..+ |.||||+++|||..|++.|+||+++
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli 93 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA 93 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 478999999999 9999999999999999999999975
No 136
>PRK05973 replicative DNA helicase; Provisional
Probab=97.81 E-value=0.00065 Score=55.15 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=29.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|+|. +|+|||+++.+++...+++|++|++|.
T Consensus 66 l~LIaG~-PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 66 LVLLGAR-PGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555555 999999999999999999999999986
No 137
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.77 E-value=5.7e-05 Score=56.93 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=33.1
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
+++..|+|||. +||||||++.-++..|..+|++|.-|
T Consensus 3 ~~~mki~ITG~-PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 3 KMAMKIFITGR-PGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred CcceEEEEeCC-CCccHHHHHHHHHHHHHhcCceeeeE
Confidence 34556999999 99999999999999999999999865
No 138
>KOG1533|consensus
Probab=97.74 E-value=5.7e-05 Score=60.27 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=29.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 10 FITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 10 ~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|.|+ +|+||||-|.+....|.+.|.+|.++.
T Consensus 6 vVIGP-PgSGKsTYc~g~~~fls~~gr~~~vVN 37 (290)
T KOG1533|consen 6 VVIGP-PGSGKSTYCNGMSQFLSAIGRPVAVVN 37 (290)
T ss_pred EEEcC-CCCCccchhhhHHHHHHHhCCceEEEe
Confidence 57788 999999999999999999999999986
No 139
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.73 E-value=5.7e-05 Score=66.67 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=34.2
Q ss_pred CceeEEEEeCCC---CCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITGTNT---NIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~~kg---gvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
..|.|.|||..+ |.||||+++|||..|++.|+||+++
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~ 76 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC 76 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Confidence 468999999888 9999999999999999999998874
No 140
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.65 E-value=0.0013 Score=54.68 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=56.0
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.+|||||... +.. ......... .-+++|+++..+--.+.....+.++..+.+++ +++||++ ......+.
T Consensus 63 ~~~i~liDTPG~~d--f~~--~~~~~l~~a-D~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D-~~~a~~~~ 135 (270)
T cd01886 63 DHRINIIDTPGHVD--FTI--EVERSLRVL-DGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMD-RTGADFFR 135 (270)
T ss_pred CEEEEEEECCCcHH--HHH--HHHHHHHHc-CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCC-CCCCCHHH
Confidence 67899999987531 110 111112222 35777888765533444556666777888876 7899998 32223345
Q ss_pred hHHHHHhhcCCCce-EecCCCC
Q psy14904 196 NYIELTKYLNVTPL-GRIPYLY 216 (233)
Q Consensus 196 ~~~~l~~~~~~pvl-g~IP~~~ 216 (233)
..+.+++.++...+ -.+|-..
T Consensus 136 ~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 136 VVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHhCCCceEEEecccc
Confidence 67778877775544 3466544
No 141
>KOG2825|consensus
Probab=97.64 E-value=4.9e-05 Score=61.22 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-|.|+| |.||||||||-++.||..|++-+.+|+++-
T Consensus 19 lKwifV-GGKGGVGKTTcs~sLAvqla~~r~~vLiIS 54 (323)
T KOG2825|consen 19 LKWIFV-GGKGGVGKTTCSCSLAVQLAKVRESVLIIS 54 (323)
T ss_pred eeEEEE-cCcCCcCccchhhHHHHHHhccCCceEEee
Confidence 355555 566999999999999999999999999985
No 142
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.60 E-value=0.0028 Score=51.54 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.++||||... +.. ......... ..+++|.+...+--.+.....+.+++.+.+++ +++||++ ......++
T Consensus 63 ~~~i~liDTPG~~~--f~~--~~~~~l~~a-D~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D-~~~a~~~~ 135 (237)
T cd04168 63 DTKVNLIDTPGHMD--FIA--EVERSLSVL-DGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKID-RAGADLEK 135 (237)
T ss_pred CEEEEEEeCCCccc--hHH--HHHHHHHHh-CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcc-ccCCCHHH
Confidence 57899999986531 100 011112222 35677777665433344555666667788865 7999998 32223467
Q ss_pred hHHHHHhhcCCCce
Q psy14904 196 NYIELTKYLNVTPL 209 (233)
Q Consensus 196 ~~~~l~~~~~~pvl 209 (233)
.++.+++.++.+++
T Consensus 136 ~~~~i~~~~~~~~~ 149 (237)
T cd04168 136 VYQEIKEKLSSDIV 149 (237)
T ss_pred HHHHHHHHHCCCeE
Confidence 77888887775544
No 143
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.59 E-value=0.00017 Score=54.62 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+|.+||. +|+||||+|..|...|..+|++|.++|
T Consensus 2 g~vIwltGl-sGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGL-SGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESS-TTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 357899999 999999999999999999999999998
No 144
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00015 Score=55.61 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=35.1
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++..+|-+||. +|+||||+|..|...|.++|+++-+.|
T Consensus 21 ~~~~viW~TGL-SGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 21 QKGAVIWFTGL-SGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCeEEEeecC-CCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 34568999999 999999999999999999999999998
No 145
>PRK04296 thymidine kinase; Provisional
Probab=97.54 E-value=0.00018 Score=56.59 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=33.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP 43 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp 43 (233)
..++.++|. .|+||||.+.+++..+..+|++|++++|
T Consensus 2 g~i~litG~-~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGA-MNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECC-CCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 356777877 8999999999999999999999999984
No 146
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.53 E-value=0.00054 Score=53.20 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=28.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+++.|+|. -|+||||+-.+|.. ...+|.|++++.
T Consensus 1 Pv~ii~Gf-LGsGKTTli~~ll~-~~~~~~~~~vI~ 34 (178)
T PF02492_consen 1 PVIIITGF-LGSGKTTLINHLLK-RNRQGERVAVIV 34 (178)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHH-HHTTTS-EEEEE
T ss_pred CEEEEEcC-CCCCHHHHHHHHHH-HhcCCceeEEEE
Confidence 46788998 99999999999999 777899999986
No 147
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.53 E-value=0.0045 Score=51.31 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=53.4
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.++||||... +.. ......... .-+++|.++..+--.+.....+.++..+.+++ +++||++ ........
T Consensus 70 ~~~i~liDTPG~~d--f~~--~~~~~l~~a-D~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D-~~~a~~~~ 142 (267)
T cd04169 70 DCVINLLDTPGHED--FSE--DTYRTLTAV-DSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLD-REGRDPLE 142 (267)
T ss_pred CEEEEEEECCCchH--HHH--HHHHHHHHC-CEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCc-cCCCCHHH
Confidence 67899999987531 000 011112222 35677777754322233344555566778854 7899998 32223345
Q ss_pred hHHHHHhhcCCCceE-ecCCCC
Q psy14904 196 NYIELTKYLNVTPLG-RIPYLY 216 (233)
Q Consensus 196 ~~~~l~~~~~~pvlg-~IP~~~ 216 (233)
..+.+++.++.+++. .+|...
T Consensus 143 ~~~~l~~~l~~~~~~~~~Pi~~ 164 (267)
T cd04169 143 LLDEIEEELGIDCTPLTWPIGM 164 (267)
T ss_pred HHHHHHHHHCCCceeEEecccC
Confidence 577888888876664 366543
No 148
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.52 E-value=0.00081 Score=56.97 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=32.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|.|. +|+||||+|.+++...+++|.+|+++|
T Consensus 55 G~iteI~G~-~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 55 GRIIEIYGP-ESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 357778887 999999999999999999999999998
No 149
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.50 E-value=0.00079 Score=57.13 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-+++-|.|. +|+||||+|.+++...+++|.+++++|
T Consensus 55 G~iteI~Gp-~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 55 GRIIEIYGP-ESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 346778886 999999999999999999999999998
No 150
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.48 E-value=0.0002 Score=51.55 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=26.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|+|+|. +|+||||+|..||..+ |..++-+|
T Consensus 1 vI~I~G~-~gsGKST~a~~La~~~---~~~~i~~d 31 (121)
T PF13207_consen 1 VIIISGP-PGSGKSTLAKELAERL---GFPVISMD 31 (121)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH---TCEEEEEH
T ss_pred CEEEECC-CCCCHHHHHHHHHHHH---CCeEEEec
Confidence 5889998 9999999999999988 77776555
No 151
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.44 E-value=0.0039 Score=54.09 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=79.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
..+.|+|. +|+||||++..++..++++|.+|+|+. . -... .....-....+... +++ +.+..
T Consensus 83 slvLI~G~-pG~GKStLllq~a~~~a~~g~~VlYvs---~-EEs~--------~qi~~Ra~rlg~~~---~~l--~l~~e 144 (372)
T cd01121 83 SVILIGGD-PGIGKSTLLLQVAARLAKRGGKVLYVS---G-EESP--------EQIKLRADRLGIST---ENL--YLLAE 144 (372)
T ss_pred eEEEEEeC-CCCCHHHHHHHHHHHHHhcCCeEEEEE---C-CcCH--------HHHHHHHHHcCCCc---ccE--EEEcc
Confidence 45666666 999999999999999999999999997 1 1110 11111112233221 122 11110
Q ss_pred CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccC----CC--------CchHHHHHHhCCCEEEEEc
Q psy14904 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFH----DN--------ENSADLAEKLGLPIILVID 154 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~----~~--------~~~~~l~~~~~~~vllV~~ 154 (233)
...+.+.+.+++ .+.++|+||....+..+-. .. .....+++..+.+++++..
T Consensus 145 --------------~~le~I~~~i~~--~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh 208 (372)
T cd01121 145 --------------TNLEDILASIEE--LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH 208 (372)
T ss_pred --------------CcHHHHHHHHHh--cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 123455555543 4789999999654432110 00 1134567778888888865
Q ss_pred CCCC-------cHHHHHHHHHHHH---hCCCcEEEEEEcccC
Q psy14904 155 LKIG-------CINNALLSLEAIN---SRGLKLIGWVANHTQ 186 (233)
Q Consensus 155 ~~~~-------~~~~~~~~~~~l~---~~~~~i~GiVlN~~~ 186 (233)
.... .++++...+=.++ ....+++.++=||+.
T Consensus 209 vtk~g~~aG~~~leh~vD~Vi~le~~~~~~~R~Lri~KnR~g 250 (372)
T cd01121 209 VTKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFG 250 (372)
T ss_pred ccCCCcccCcccchhhceEEEEEEcCCCCcEEEEEEEeCCCC
Confidence 3321 1233222211222 123566777778765
No 152
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.44 E-value=0.0003 Score=54.32 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.++|. +|+||||++..|+..+...|.++.++|
T Consensus 3 ~g~~i~~~G~-~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 3 RGVTVWFTGL-SGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 4568999988 999999999999999999999999886
No 153
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.42 E-value=0.00034 Score=54.37 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=30.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+++.|+ +|+|||.+|..++..+.++|++|.+++
T Consensus 47 ~~~l~l~G~-~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGP-PGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhh-HhHHHHHHHHHHHHHhccCCcceeEee
Confidence 457999998 999999999999999999999999987
No 154
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.41 E-value=0.00021 Score=60.68 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+....++|.|+++..|+|||+++.-+++.|+++||||+++.
T Consensus 122 ~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVr 162 (449)
T COG2403 122 LKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVR 162 (449)
T ss_pred hhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEe
Confidence 33456799999999999999999999999999999999987
No 155
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.40 E-value=0.004 Score=55.41 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=31.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++.|+|. +|+||||++..++..++++|.+|+|++
T Consensus 81 s~~lI~G~-pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 81 SVVLIGGD-PGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45666666 999999999999999999999999997
No 156
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.40 E-value=0.00057 Score=53.40 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=43.8
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
..+.+.+|||||... +. ....-+.....-+++|+++..+--.++...++.++..+++ .-+++||++
T Consensus 68 ~~~~i~~iDtPG~~~--f~---~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D 133 (188)
T PF00009_consen 68 NNRKITLIDTPGHED--FI---KEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMD 133 (188)
T ss_dssp SSEEEEEEEESSSHH--HH---HHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCT
T ss_pred cccceeecccccccc--ee---ecccceecccccceeeeecccccccccccccccccccccc-eEEeeeecc
Confidence 567899999997531 10 0111112223457888888766555677778888888999 668999999
No 157
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.40 E-value=0.0022 Score=50.98 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=31.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+++|.++|. .|+||||+..+|+..+. ++++|.+++
T Consensus 21 ~~~~i~~~G~-~gsGKTTli~~l~~~~~-~~~~v~v~~ 56 (207)
T TIGR00073 21 GLVVLNFMSS-PGSGKTTLIEKLIDNLK-DEVKIAVIE 56 (207)
T ss_pred CcEEEEEECC-CCCCHHHHHHHHHHHHh-cCCeEEEEE
Confidence 5789999999 99999999999998875 467999987
No 158
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.38 E-value=0.0018 Score=56.24 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=33.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeec
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIAS 46 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~ 46 (233)
-+|.|+|. .|+||||++..|...|..+ ++|.++|...+
T Consensus 6 ~~i~i~G~-~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~ 43 (369)
T PRK14490 6 FEIAFCGY-SGSGKTTLITALVRRLSER-FSVGYYKHGCH 43 (369)
T ss_pred EEEEEEeC-CCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence 47899998 8999999999999999999 99999994333
No 159
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.35 E-value=0.005 Score=54.90 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=30.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++.|+|. +|+||||++..++..++++|.+|+|+.
T Consensus 95 svilI~G~-pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 95 SLILIGGD-PGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred eEEEEEcC-CCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45566666 999999999999999999999999997
No 160
>PRK07667 uridine kinase; Provisional
Probab=97.35 E-value=0.00038 Score=54.80 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=32.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+|+|+|. +|+||||+|..|+..|.+.|.++.++.
T Consensus 18 ~iIgI~G~-~gsGKStla~~L~~~l~~~~~~~~~i~ 52 (193)
T PRK07667 18 FILGIDGL-SRSGKTTFVANLKENMKQEGIPFHIFH 52 (193)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57888888 999999999999999999999988876
No 161
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.34 E-value=0.0076 Score=54.74 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.++||||... +.. ......... .-+++|.++..+--.++....+..+..+++++ +++||++ .......+
T Consensus 78 ~~~inliDTPG~~d--f~~--~~~~~l~~a-D~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~D-~~~a~~~~ 150 (526)
T PRK00741 78 DCLINLLDTPGHED--FSE--DTYRTLTAV-DSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKLD-RDGREPLE 150 (526)
T ss_pred CEEEEEEECCCchh--hHH--HHHHHHHHC-CEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECCc-ccccCHHH
Confidence 57799999987631 110 011112222 35777877765432334445566667788855 7899998 32223345
Q ss_pred hHHHHHhhcCCCce
Q psy14904 196 NYIELTKYLNVTPL 209 (233)
Q Consensus 196 ~~~~l~~~~~~pvl 209 (233)
.++.+++.++.+++
T Consensus 151 ~l~~i~~~l~~~~~ 164 (526)
T PRK00741 151 LLDEIEEVLGIACA 164 (526)
T ss_pred HHHHHHHHhCCCCe
Confidence 67778887787655
No 162
>PF13245 AAA_19: Part of AAA domain
Probab=97.34 E-value=0.00051 Score=45.60 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=28.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR----GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~----G~~Vl~~d 42 (233)
+.+.|.+. +|+|||++..+++..+... |.+|+++-
T Consensus 11 ~~~vv~g~-pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 11 PLFVVQGP-PGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 34445666 9999999999999999876 88999974
No 163
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.30 E-value=0.00052 Score=54.58 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||.++..+|+|+|. +|+||||++..|+..| .+.++.++.
T Consensus 1 ~~~~~~~iI~I~G~-sGsGKTTl~~~l~~~l--~~~~~~~i~ 39 (209)
T PRK05480 1 MMMKKPIIIGIAGG-SGSGKTTVASTIYEEL--GDESIAVIP 39 (209)
T ss_pred CCCCCCEEEEEECC-CCCCHHHHHHHHHHHh--CCCceEEEe
Confidence 56666778999998 9999999999999998 455676664
No 164
>PRK15453 phosphoribulokinase; Provisional
Probab=97.29 E-value=0.00051 Score=56.92 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++..+|.|+|. +|+||||++..|+..|.+.|.++.+++
T Consensus 3 ~k~piI~ItG~-SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 3 AKHPIIAVTGS-SGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCCcEEEEECC-CCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 44678999999 999999999999999988888888776
No 165
>PHA00729 NTP-binding motif containing protein
Probab=97.29 E-value=0.00048 Score=55.31 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+..|.|+|+ +|+||||+|..|+..+.
T Consensus 16 ~f~nIlItG~-pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGK-QGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 3457999998 99999999999999875
No 166
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.29 E-value=0.0005 Score=55.02 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=31.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++.|+|. +|+||||++..+|..++.+|.+|++++
T Consensus 20 ~i~~i~G~-~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 20 TVTQVYGP-PGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45667775 999999999999999999999999997
No 167
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.27 E-value=0.00059 Score=44.33 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|+|+|. .|+||||++..|+..| .+.++.+++
T Consensus 1 ~i~i~G~-~gsGKst~~~~l~~~l--~~~~~~~i~ 32 (69)
T cd02019 1 IIAITGG-SGSGKSTVAKKLAEQL--GGRSVVVLD 32 (69)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHh--cCCCEEEEe
Confidence 4778887 9999999999999999 677888776
No 168
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.25 E-value=0.0032 Score=50.49 Aligned_cols=36 Identities=22% Similarity=0.065 Sum_probs=31.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC------CeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRG------ISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G------~~Vl~~d 42 (233)
-.++.|+|. +|+|||+++..++......| .+|++++
T Consensus 19 g~v~~I~G~-~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 19 GRITEIFGE-FGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CcEEEEeCC-CCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 357788887 99999999999999988887 8999998
No 169
>PRK09354 recA recombinase A; Provisional
Probab=97.24 E-value=0.003 Score=54.10 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=32.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+++-|.|. +|+||||+|.+++...+++|.+++++|
T Consensus 60 G~IteI~G~-~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 60 GRIVEIYGP-ESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 356778886 999999999999999999999999998
No 170
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.24 E-value=0.00043 Score=61.83 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=32.3
Q ss_pred CceeEEEEeCCC---CCcHHHHHHHHHHHHHHcCCeee
Q psy14904 5 NFLHYFITGTNT---NIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 5 ~~~~i~i~~~kg---gvGKTt~a~~La~~l~~~G~~Vl 39 (233)
..|+|.|||.-+ |.||||+++|||..|++.|+|+.
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i 90 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVC 90 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceE
Confidence 468999999888 99999999999999999999973
No 171
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.23 E-value=0.0028 Score=48.23 Aligned_cols=30 Identities=20% Similarity=0.068 Sum_probs=26.6
Q ss_pred eCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 13 GTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 13 ~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-+..|.||||.|.++|...+.+|+||+++.
T Consensus 8 y~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 8 YTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344699999999999999999999999954
No 172
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.23 E-value=0.00053 Score=53.24 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|+|. +|+|||+++..++...+++|.+|+++.
T Consensus 2 ~li~G~-~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGG-PGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 566777 999999999999999999999999986
No 173
>PRK00007 elongation factor G; Reviewed
Probab=97.19 E-value=0.0096 Score=55.98 Aligned_cols=92 Identities=12% Similarity=0.059 Sum_probs=56.0
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.+|||||... .. ....-+.....-+++|+++..+--.+.....+.+++.+.+.+ +++||++.. ......
T Consensus 74 ~~~~~liDTPG~~~--f~---~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~-~~~~~~ 146 (693)
T PRK00007 74 DHRINIIDTPGHVD--FT---IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRT-GADFYR 146 (693)
T ss_pred CeEEEEEeCCCcHH--HH---HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCC-CCCHHH
Confidence 67899999997531 11 011112222235788888766544456666777778888876 899999832 223445
Q ss_pred hHHHHHhhcCCCce-EecCC
Q psy14904 196 NYIELTKYLNVTPL-GRIPY 214 (233)
Q Consensus 196 ~~~~l~~~~~~pvl-g~IP~ 214 (233)
..+.+++.++.... ..||.
T Consensus 147 ~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 147 VVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHHHHHhCCCeeeEEecC
Confidence 66777777665332 34554
No 174
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.19 E-value=0.005 Score=52.11 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=28.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
..++-|+|. +|+|||++|..++...+. .+.+|+++|
T Consensus 95 g~i~ei~G~-~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 95 QAITEVFGE-FGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 345667776 999999999999888653 123999998
No 175
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.19 E-value=0.005 Score=51.37 Aligned_cols=98 Identities=13% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
+...++.|+|. +|+||||+...|...|... +++.++. .+. .. ..|...++. .|.+ . +.
T Consensus 102 ~~~~~v~l~G~-pGsGKTTLl~~l~~~l~~~-~~~~VI~---gD~-~t-------~~Da~rI~~-~g~p------v--vq 159 (290)
T PRK10463 102 RKQLVLNLVSS-PGSGKTTLLTETLMRLKDS-VPCAVIE---GDQ-QT-------VNDAARIRA-TGTP------A--IQ 159 (290)
T ss_pred cCCeEEEEECC-CCCCHHHHHHHHHHHhccC-CCEEEEC---CCc-Cc-------HHHHHHHHh-cCCc------E--EE
Confidence 34668899998 9999999999999999655 4777775 111 11 125444443 3321 1 11
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCcc
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPF 132 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~ 132 (233)
...... -..+...+.++++++. .+.|++|||+.|.+..|.
T Consensus 160 i~tG~~---------Chl~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa 200 (290)
T PRK10463 160 VNTGKG---------CHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPA 200 (290)
T ss_pred ecCCCC---------CcCcHHHHHHHHHHHhhcCCcEEEEECCCCccCCC
Confidence 110000 0123345677777765 458999999998766664
No 176
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.18 E-value=0.00063 Score=52.90 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=30.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|+|+|. +|+||||+|..|+..|...|.++.++.
T Consensus 1 ii~i~G~-sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 1 VVGIAGP-SGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4788887 999999999999999999999888874
No 177
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.18 E-value=0.015 Score=45.80 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=39.6
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.+.+|||||... + .....-+.....-+++|+++..+--.+....++.+.+.+.+.+-+++||++
T Consensus 64 ~~~i~~iDtPG~~~--~---~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D 129 (195)
T cd01884 64 NRHYAHVDCPGHAD--Y---IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CeEEEEEECcCHHH--H---HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 56789999997521 1 011111111223577788876654344555666777778764557799998
No 178
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.17 E-value=0.016 Score=44.62 Aligned_cols=65 Identities=18% Similarity=0.074 Sum_probs=36.1
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
..+++++|+||.... . . ......... .-+++|.+...+........++.++..+.+ .-+|+||.+
T Consensus 61 ~~~~~liDtpG~~~~--~-~-~~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHEDF--S-S-EVIRGLSVS-DGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHHH--H-H-HHHHHHHhc-CEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCC
Confidence 578999999863210 0 0 111112222 356777776654323333445555556777 447899998
No 179
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.16 E-value=0.00083 Score=54.03 Aligned_cols=36 Identities=31% Similarity=0.187 Sum_probs=32.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-.++.|+|. +|+|||+++..++...++.|.+|++++
T Consensus 23 g~i~~i~G~-~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 23 GTITQIYGP-PGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 346677776 999999999999999999999999998
No 180
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.16 E-value=0.00085 Score=53.28 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=32.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-.++.|+|. +|+|||+++..++...+++|.+|++++
T Consensus 12 g~i~~i~G~-~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 12 GTITQIYGP-PGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457788887 999999999999999999999999998
No 181
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00074 Score=55.54 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=33.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+++.|+ +|+|||.++++++..+.++|.+|+++.
T Consensus 105 ~~nl~l~G~-~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 105 GENLVLLGP-PGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred CCcEEEECC-CCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 457888888 999999999999999999999999986
No 182
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.13 E-value=0.017 Score=54.25 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=52.8
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.++||||... .. ....-+.....-+++|.+...+--.+.....+.+++.+.+++ +++||++ -.....+.
T Consensus 74 ~~~i~liDTPG~~~--~~---~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D-~~~~~~~~ 146 (689)
T TIGR00484 74 GHRINIIDTPGHVD--FT---VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMD-KTGANFLR 146 (689)
T ss_pred CeEEEEEECCCCcc--hh---HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCC-CCCCCHHH
Confidence 67899999986531 11 111222222235777777765433334455566677788865 7899998 32222345
Q ss_pred hHHHHHhhcCCCce-EecCC
Q psy14904 196 NYIELTKYLNVTPL-GRIPY 214 (233)
Q Consensus 196 ~~~~l~~~~~~pvl-g~IP~ 214 (233)
..+.+++.++...+ ..||.
T Consensus 147 ~~~~i~~~l~~~~~~~~ipi 166 (689)
T TIGR00484 147 VVNQIKQRLGANAVPIQLPI 166 (689)
T ss_pred HHHHHHHHhCCCceeEEecc
Confidence 66777776664332 34554
No 183
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0005 Score=54.09 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=30.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
|+-|.+||- +|+||||.|.+||..|.+++.+|...
T Consensus 1 mpLiIlTGy-PgsGKTtfakeLak~L~~~i~~vi~l 35 (261)
T COG4088 1 MPLIILTGY-PGSGKTTFAKELAKELRQEIWRVIHL 35 (261)
T ss_pred CceEEEecC-CCCCchHHHHHHHHHHHHhhhhcccc
Confidence 456778888 99999999999999999999988764
No 184
>PRK08233 hypothetical protein; Provisional
Probab=97.09 E-value=0.00056 Score=52.90 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=27.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+|+|+|. +|+||||+|..|+..|. +..+..+|
T Consensus 3 ~~iI~I~G~-~GsGKtTla~~L~~~l~--~~~~~~~d 36 (182)
T PRK08233 3 TKIITIAAV-SGGGKTTLTERLTHKLK--NSKALYFD 36 (182)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHhhCC--CCceEEEC
Confidence 468999999 69999999999999884 33565555
No 185
>PRK06526 transposase; Provisional
Probab=97.08 E-value=0.00054 Score=56.33 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=31.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+++.|+ +|+|||+++.+|+..+.++|++|.++.
T Consensus 99 ~nlll~Gp-~GtGKThLa~al~~~a~~~g~~v~f~t 133 (254)
T PRK06526 99 ENVVFLGP-PGTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred ceEEEEeC-CCCchHHHHHHHHHHHHHCCCchhhhh
Confidence 46888887 999999999999999999999997753
No 186
>PRK06696 uridine kinase; Validated
Probab=97.08 E-value=0.0011 Score=53.27 Aligned_cols=34 Identities=41% Similarity=0.439 Sum_probs=30.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
..+|+|+|. +|+||||+|..|+..|...|.+|..
T Consensus 22 ~~iI~I~G~-sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 22 PLRVAIDGI-TASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 457888887 9999999999999999988988876
No 187
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.07 E-value=0.0011 Score=54.18 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=30.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+++.|. +|+|||+++.+++..+.++|++|+++.
T Consensus 100 ~~~~l~G~-~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGK-PGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 35666665 999999999999999999999999985
No 188
>PRK12739 elongation factor G; Reviewed
Probab=97.04 E-value=0.0079 Score=56.53 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=55.2
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN 194 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~ 194 (233)
.++.+.+|||||... +.. ...-+.....-+++|+++..+--.+....++.+++.+.+++ +++||++ ......+
T Consensus 71 ~~~~i~liDTPG~~~--f~~---e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D-~~~~~~~ 143 (691)
T PRK12739 71 KGHRINIIDTPGHVD--FTI---EVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMD-RIGADFF 143 (691)
T ss_pred CCEEEEEEcCCCHHH--HHH---HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCC-CCCCCHH
Confidence 367899999997531 111 11112222235788888766533344556666677888876 8899998 3222334
Q ss_pred hhHHHHHhhcCCCce-EecCC
Q psy14904 195 ENYIELTKYLNVTPL-GRIPY 214 (233)
Q Consensus 195 ~~~~~l~~~~~~pvl-g~IP~ 214 (233)
...+.+++.++...+ ..+|.
T Consensus 144 ~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 144 RSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHhCCCceeEEecc
Confidence 566777776665333 34554
No 189
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00073 Score=51.63 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=23.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
.|+|||+ +|+||||+|-.|+ ..|+++.-
T Consensus 2 ~I~ITGT-PGvGKTT~~~~L~----~lg~~~i~ 29 (180)
T COG1936 2 LIAITGT-PGVGKTTVCKLLR----ELGYKVIE 29 (180)
T ss_pred eEEEeCC-CCCchHHHHHHHH----HhCCceee
Confidence 5899999 9999999998777 45777754
No 190
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.03 E-value=0.0011 Score=54.60 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|.|+|. +|+||||++..|...|.+.|.++.+++
T Consensus 1 IIgItG~-SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGS-SGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 4789998 999999999999999999999998886
No 191
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=97.03 E-value=0.001 Score=53.69 Aligned_cols=38 Identities=37% Similarity=0.422 Sum_probs=34.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEeeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMKPIA 45 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~dp~~ 45 (233)
+-++|.|+ +|+|||+++..|...+. +.|.++++|||.+
T Consensus 24 ~H~~I~G~-TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 24 RHIAIFGT-TGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 56899999 99999999999999999 8999999999743
No 192
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.01 E-value=0.0013 Score=54.32 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++.|+|. +|+|||++|..++...+++|.+|+++.
T Consensus 37 s~~lI~G~-pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 37 SVINITGV-SDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred cEEEEEcC-CCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46777777 999999999999999999999999997
No 193
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.99 E-value=0.0011 Score=52.19 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGIS 37 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~ 37 (233)
+|.|+|. +|+||||+|..|+..|.+.|..
T Consensus 1 IIgI~G~-sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGP-SGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECC-CCCCHHHHHHHHHHHhCccCcC
Confidence 5899999 9999999999999999998877
No 194
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.98 E-value=0.0013 Score=49.50 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=29.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+++|+|. +|+||||++..|+..+...|.++.+++
T Consensus 1 ~i~i~G~-~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 1 VIWLTGL-SGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred CEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3677777 999999999999999999998887775
No 195
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.98 E-value=0.0014 Score=49.25 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|+|. +|+||||++..++..++.+|.+|++++
T Consensus 2 ~~i~G~-~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGP-TGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCC-CCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 566676 999999999999999999999999987
No 196
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.97 E-value=0.0093 Score=50.58 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=31.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-+++-|.|. .++||||+++.....+.+.|..++++|
T Consensus 53 G~ivEi~G~-~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 53 GRIVEIYGP-ESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CceEEEeCC-CCCchhhhHHHHHHhhhcccceeEEec
Confidence 467889998 799999999999999999999999999
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=96.97 E-value=0.0015 Score=53.81 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=31.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+++.|+ +|+|||+++..|+..+.++|++|.++.
T Consensus 103 ~~v~l~Gp-~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGP-SGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CeEEEEeC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46788888 999999999999999989999999875
No 198
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.97 E-value=0.0014 Score=55.47 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=34.8
Q ss_pred CceeEEEEeCC-CCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTN-TNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~k-ggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.|-|-. ||+|||.++.-|+..|.++|+++.++-
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 46799999965 999999999999999999999999985
No 199
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.96 E-value=0.002 Score=49.77 Aligned_cols=37 Identities=32% Similarity=0.323 Sum_probs=32.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+...|.++|. .|+||||++..|+..|...+..+.+++
T Consensus 6 ~~~~I~i~G~-~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGL-AGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3458888888 999999999999999998888887775
No 200
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.95 E-value=0.022 Score=51.85 Aligned_cols=87 Identities=18% Similarity=0.074 Sum_probs=50.0
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.++||||... +.. ......... .-+++|+++..+--.++....+.++..+.+ +-+++||++ .......+
T Consensus 79 ~~~inliDTPG~~d--f~~--~~~~~l~~a-D~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD-~~~~~~~~ 151 (527)
T TIGR00503 79 DCLVNLLDTPGHED--FSE--DTYRTLTAV-DNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLD-RDIRDPLE 151 (527)
T ss_pred CeEEEEEECCChhh--HHH--HHHHHHHhC-CEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcc-ccCCCHHH
Confidence 67899999997521 110 011111222 357778877654223334445555666777 457899998 32223456
Q ss_pred hHHHHHhhcCCCce
Q psy14904 196 NYIELTKYLNVTPL 209 (233)
Q Consensus 196 ~~~~l~~~~~~pvl 209 (233)
..+.+++.++.+.+
T Consensus 152 ll~~i~~~l~~~~~ 165 (527)
T TIGR00503 152 LLDEVENELKINCA 165 (527)
T ss_pred HHHHHHHHhCCCCc
Confidence 67788877776543
No 201
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.93 E-value=0.002 Score=50.86 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=32.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..+|.|+|. +|+||||++..|+..|..+|..+.++|
T Consensus 23 ~~~~i~i~G~-~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 23 KGVVLWFTGL-SGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4567888887 899999999999999998998888886
No 202
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.93 E-value=0.0013 Score=55.95 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=33.7
Q ss_pred CceeEEEEeC-CCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGT-NTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~-kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.|-|- -||+|||+++..|+..|.++|++|.++.
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 3568999664 4999999999999999999999999986
No 203
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=96.92 E-value=0.017 Score=47.19 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=93.9
Q ss_pred ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeec-Cccc-----------CCCCCCccchHHHHHHHHhC
Q psy14904 6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK--PIAS-GAYL-----------NNKNKIWFNEDVNLLNKYSN 70 (233)
Q Consensus 6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~-~~~~-----------~~~~~~l~~~d~~~~~~~~~ 70 (233)
+|.|+||| -=+|.||=.+++.|+..|..+|++|..+| |-.. ++.. .+ ..+-.+-|...+.+..+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~-DG~EtDLDlG~YERFl~ 79 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTD-DGGETDLDLGHYERFLD 79 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-T-TS-EEETHHHHHHHHHT
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEec-CccccccccchHHHHhc
Confidence 57888888 45899999999999999999999999976 4211 1100 00 01122335555666665
Q ss_pred CCcccccceeee-eecCCCChhhhhhhcCCCC---------CHHHHHHHHHHhhc--CCCeEEEeccCcccCccCCCCch
Q psy14904 71 SLYEFTKLINPY-LFKYPISPYTSSNLENRII---------NTSHIINCYNYLSN--LTDVIILEGIGGFSVPFHDNENS 138 (233)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~--~~D~vlID~~~g~~~p~~~~~~~ 138 (233)
...+...++... .+. .-+..++.|..+ -.+.+.+.+.+.++ +.|++|||-.|...+ + +....
T Consensus 80 ~~l~~~~niTtGkiy~----~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~~~~~Dv~iiEiGGTVGD-I-Es~pF 153 (276)
T PF06418_consen 80 INLTKDNNITTGKIYQ----SVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKKPEPDVVIIEIGGTVGD-I-ESLPF 153 (276)
T ss_dssp S---GGGEEEHHHHHH----HHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHCCCT-SEEEEEEESETTS-C-CCHHH
T ss_pred CCCcccccccHHHHHH----HHHHHHhcCcccCceeeecchHHHHHHHHHHHhcCCCCCCEEEEecCCcccc-c-ccccH
Confidence 433221122110 010 001123333221 13567777777765 599999998766543 1 11112
Q ss_pred H----HHHHHhC-CCEEEEEcC--------CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcC
Q psy14904 139 A----DLAEKLG-LPIILVIDL--------KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLN 205 (233)
Q Consensus 139 ~----~l~~~~~-~~vllV~~~--------~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~ 205 (233)
. ++....+ ..++++.-. +.--.+=+..+++.|+..|+. -=+++=|.+ ....++..+++....+
T Consensus 154 lEAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~-PDilvcRs~---~~l~~~~k~KIalFc~ 229 (276)
T PF06418_consen 154 LEAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQ-PDILVCRSE---RPLDEEIKEKIALFCN 229 (276)
T ss_dssp HHHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT----SEEEEEES---S---HHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCC-CCEEEEcCC---CCCCHHHHHHHHccCC
Confidence 2 2222221 123333211 111122355577778888876 445566655 2344567778887767
Q ss_pred CCc
Q psy14904 206 VTP 208 (233)
Q Consensus 206 ~pv 208 (233)
+|.
T Consensus 230 V~~ 232 (276)
T PF06418_consen 230 VPP 232 (276)
T ss_dssp S-G
T ss_pred CCH
Confidence 653
No 204
>PRK12377 putative replication protein; Provisional
Probab=96.90 E-value=0.0018 Score=53.03 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=31.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+++.|+ +|+|||+++..++..+.++|++|.++.
T Consensus 102 ~~l~l~G~-~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 102 TNFVFSGK-PGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 46888887 999999999999999999999998875
No 205
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.89 E-value=0.0016 Score=53.33 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|.++|. +|+||||++..|+..|...|++|.+++
T Consensus 2 Ivl~G~-pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGL-PGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 677888 999999999999999999999988875
No 206
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.88 E-value=0.01 Score=50.29 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=27.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
.++-|+|. +|+|||++|..++..-+. .|.+|+|+|
T Consensus 97 ~iteI~G~-~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 97 SITEVFGE-FRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred eEEEEECC-CCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 45667776 999999999999875432 356999998
No 207
>PRK08118 topology modulation protein; Reviewed
Probab=96.87 E-value=0.0011 Score=50.94 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=25.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+.|+|.|+ +|+||||+|..|+..+ |..+.-+|
T Consensus 1 m~rI~I~G~-~GsGKSTlak~L~~~l---~~~~~~lD 33 (167)
T PRK08118 1 MKKIILIGS-GGSGKSTLARQLGEKL---NIPVHHLD 33 (167)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh---CCCceecc
Confidence 456999998 9999999999998776 55544433
No 208
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.87 E-value=0.015 Score=49.98 Aligned_cols=35 Identities=14% Similarity=-0.038 Sum_probs=27.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH----c--CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK----R--GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~----~--G~~Vl~~d 42 (233)
.+.-|+|. +|+|||++|..|+..-+. . +-+|+|+|
T Consensus 127 ~ItEI~G~-~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 127 CITEAFGE-FRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred eEEEEecC-CCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 45567777 999999999999876542 1 35999998
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.85 E-value=0.0011 Score=47.93 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=30.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++|.|. +|+||||++..|+..+...++.+.+++
T Consensus 3 ~~~~l~G~-~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGP-PGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECC-CCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 56888888 999999999999999988877788876
No 210
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.85 E-value=0.0022 Score=50.20 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|+|.|. .|+||||.+..|+..|...|++|...-
T Consensus 3 g~~IvieG~-~GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 3 GMFIVIEGI-DGAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467999999 999999999999999999999997653
No 211
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.85 E-value=0.0021 Score=54.35 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=33.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+++.|. .|+|||.++..+|..+.++|++|.++.
T Consensus 156 ~~gl~L~G~-~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGD-FGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 467999998 999999999999999999999999886
No 212
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.84 E-value=0.0024 Score=49.91 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|+|.|. .|+||||++..|+..|..+|++|..+.
T Consensus 2 ~I~ieG~-~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGI-DGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5888888 999999999999999999999997765
No 213
>PRK08181 transposase; Validated
Probab=96.81 E-value=0.0023 Score=53.07 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=32.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+++.|+ +|+|||.++.+++..+.++|++|.++.
T Consensus 106 ~~nlll~Gp-~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGP-PGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEEec-CCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 346888888 999999999999999999999998876
No 214
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.81 E-value=0.0019 Score=51.36 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.6
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
|+.++..+|+|+|. +|+||||++..|+..+..
T Consensus 1 ~~~~~g~vi~I~G~-sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 1 MDKPKGIIIGIGGG-SGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCCCCeEEEEEECC-CCCCHHHHHHHHHHHhcc
Confidence 77888889999998 999999999999988864
No 215
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.81 E-value=0.014 Score=44.97 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=25.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++|+|. .|+|||+.|..++.. .|.++.++.
T Consensus 2 ~li~G~-~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 2 ILVTGG-ARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred EEEECC-CCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 577777 999999999999865 678999986
No 216
>PRK04040 adenylate kinase; Provisional
Probab=96.79 E-value=0.0021 Score=50.39 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=27.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
++++|+|+|. +|+||||++..|+..|. .+++++
T Consensus 1 ~~~~i~v~G~-pG~GKtt~~~~l~~~l~-~~~~~~ 33 (188)
T PRK04040 1 MMKVVVVTGV-PGVGKTTVLNKALEKLK-EDYKIV 33 (188)
T ss_pred CCeEEEEEeC-CCCCHHHHHHHHHHHhc-cCCeEE
Confidence 3678999999 99999999999999885 355553
No 217
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.79 E-value=0.0026 Score=51.60 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=30.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
..+.|++. +|+|||+++.+++..++.+ |.+|+++.
T Consensus 14 ~l~lI~G~-~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 14 DLIIIAAR-PSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred eEEEEEeC-CCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 45666666 9999999999999999988 99999986
No 218
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.79 E-value=0.0022 Score=53.14 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=28.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+-|.++|. +|+||||+|..|...|...+++|.+++
T Consensus 1 MpLiil~G~-P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 1 MPLIILCGL-PCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp E-EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred CEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 567888888 999999999999999999999999986
No 219
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.77 E-value=0.0026 Score=54.26 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=32.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+++.|+ +|+|||+++..+|..+.++|++|.++.
T Consensus 183 ~~~Lll~G~-~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 183 NENLLFYGN-TGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCcEEEECC-CCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 367889997 999999999999999999999999986
No 220
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=96.73 E-value=0.0021 Score=54.74 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=34.7
Q ss_pred CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.|-| +-||+|||-++.-|+..|.++|++|+++-
T Consensus 34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS 72 (326)
T PF02606_consen 34 PVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS 72 (326)
T ss_pred CCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc
Confidence 567999998 66899999999999999999999999974
No 221
>KOG0635|consensus
Probab=96.72 E-value=0.0034 Score=46.98 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=33.5
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++.-+|-|||- .|+||||+|+.|.++|-++|+-.-..|
T Consensus 29 qkGcviWiTGL-SgSGKStlACaL~q~L~qrgkl~Y~LD 66 (207)
T KOG0635|consen 29 QKGCVIWITGL-SGSGKSTLACALSQALLQRGKLTYILD 66 (207)
T ss_pred CCCcEEEEecc-CCCCchhHHHHHHHHHHhcCceEEEec
Confidence 34568999999 999999999999999999998777766
No 222
>PF12846 AAA_10: AAA-like domain
Probab=96.69 E-value=0.0027 Score=52.86 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=32.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
.++|+|. +|+||||+..+++..+.++|.+++++||.
T Consensus 3 h~~i~G~-tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 3 HTLILGK-TGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred eEEEECC-CCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4677887 99999999999999999999999999975
No 223
>PLN03127 Elongation factor Tu; Provisional
Probab=96.69 E-value=0.049 Score=48.57 Aligned_cols=66 Identities=12% Similarity=-0.033 Sum_probs=41.0
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.+++|||||.- .............+-+++|+++..+-..+....+..++..+++.+=+++||++
T Consensus 123 ~~~i~~iDtPGh~-----~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiD 188 (447)
T PLN03127 123 KRHYAHVDCPGHA-----DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVD 188 (447)
T ss_pred CeEEEEEECCCcc-----chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeec
Confidence 5578999999752 11111111111223567788876654455666777777888886557899998
No 224
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=96.69 E-value=0.0028 Score=54.23 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=34.4
Q ss_pred CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.|-| +=||+|||.++..|+..|.++|++|.++-
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 457898888 67999999999999999999999999975
No 225
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.68 E-value=0.0032 Score=48.47 Aligned_cols=32 Identities=38% Similarity=0.680 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
|+|||. +|+||||+...+...+...|.+|.-|
T Consensus 2 i~iTG~-pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 2 IFITGP-PGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEEES--TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEEECc-CCCCHHHHHHHHHHHhhccCCccceE
Confidence 789998 99999999999999999999888654
No 226
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.68 E-value=0.0039 Score=50.48 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=32.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...+.|+|. +|+||||++..++..+.++|.+++++.
T Consensus 24 g~~~~i~G~-~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 24 GSLILIEGD-ESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 347788888 999999999999999999999999987
No 227
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.68 E-value=0.027 Score=42.78 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++.++|. .|+||||+...+.... .|+++.++.
T Consensus 2 ~~~l~G~-~GsGKTtl~~~l~~~~--~~~~~~~i~ 33 (158)
T cd03112 2 VTVLTGF-LGAGKTTLLNHILTEQ--HGRKIAVIE 33 (158)
T ss_pred EEEEEEC-CCCCHHHHHHHHHhcc--cCCcEEEEe
Confidence 5778888 9999999999988764 588888875
No 228
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.67 E-value=0.0042 Score=48.30 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=31.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..+|.++|. +|+||||++..|+..+...|..+.+++
T Consensus 17 ~~~~i~i~G~-~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 17 RGVVIWLTGL-SGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4567888887 899999999999999998898887776
No 229
>PRK06762 hypothetical protein; Provisional
Probab=96.67 E-value=0.0034 Score=47.92 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=25.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|.|+|. +|+||||+|..|+..+ |..+.+++
T Consensus 2 ~~li~i~G~-~GsGKST~A~~L~~~l---~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGN-SGSGKTTIAKQLQERL---GRGTLLVS 34 (166)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh---CCCeEEec
Confidence 456777766 9999999999999888 44565554
No 230
>PRK10218 GTP-binding protein; Provisional
Probab=96.67 E-value=0.044 Score=50.66 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=41.4
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+++.+.++||||.-. +.. ..-...... .-+++|.++..+...++....+.+...+++.+ +++||++
T Consensus 66 ~~~~inliDTPG~~d--f~~--~v~~~l~~a-Dg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD 131 (607)
T PRK10218 66 NDYRINIVDTPGHAD--FGG--EVERVMSMV-DSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVD 131 (607)
T ss_pred CCEEEEEEECCCcch--hHH--HHHHHHHhC-CEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcC
Confidence 367899999986531 110 112222333 35788888776544455555666667888865 7899998
No 231
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.66 E-value=0.036 Score=51.13 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=42.2
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.+-||||||.-. +.. ......... .-+++|+++..+...++...++.+.+.+++++ +|+||++
T Consensus 63 ~~kinlIDTPGh~D--F~~--ev~~~l~~a-D~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD 127 (594)
T TIGR01394 63 GTKINIVDTPGHAD--FGG--EVERVLGMV-DGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKID 127 (594)
T ss_pred CEEEEEEECCCHHH--HHH--HHHHHHHhC-CEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCC
Confidence 57899999987531 100 111122233 35777888776655666667777778888864 8899998
No 232
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.025 Score=46.99 Aligned_cols=36 Identities=22% Similarity=0.144 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++=|.|. .|+||||+|.+++..-.+.|.++.++|
T Consensus 60 g~ItEiyG~-~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 60 GRITEIYGP-ESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred ceEEEEecC-CCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 346678888 999999999999999999999999998
No 233
>PRK08727 hypothetical protein; Validated
Probab=96.64 E-value=0.0035 Score=50.86 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=31.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+++.|. +|+|||.++..++..+.++|++|.++.
T Consensus 42 ~~l~l~G~-~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGP-AGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45888888 999999999999999999999999986
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.0035 Score=50.68 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=31.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+++.|+ +|+|||+++..++..+.++|.++.++.
T Consensus 40 ~~l~l~G~-~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 40 PFFYIWGG-KSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 45788888 999999999999999999999999887
No 235
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.62 E-value=0.016 Score=45.04 Aligned_cols=38 Identities=18% Similarity=0.061 Sum_probs=32.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+-+.+..+..|-||||-+.++|....-+|+||+++.
T Consensus 26 ~~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 26 EEKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred cccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 34556777777899999999999999999999999975
No 236
>PHA02542 41 41 helicase; Provisional
Probab=96.61 E-value=0.0031 Score=56.41 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=30.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|.+..+|+||||+++|+|...++.|++|++|.
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 35555566999999999999999999999999986
No 237
>PRK13351 elongation factor G; Reviewed
Probab=96.61 E-value=0.05 Score=51.19 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=55.4
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.++||||... +.. ......... .-+++|.+...+.-.+.....+.++..+.+++ +|+||.+ ........
T Consensus 72 ~~~i~liDtPG~~d--f~~--~~~~~l~~a-D~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D-~~~~~~~~ 144 (687)
T PRK13351 72 NHRINLIDTPGHID--FTG--EVERSLRVL-DGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMD-RVGADLFK 144 (687)
T ss_pred CEEEEEEECCCcHH--HHH--HHHHHHHhC-CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCC-CCCCCHHH
Confidence 57899999987531 100 111222223 35677777765432334445556667788866 7899998 33333456
Q ss_pred hHHHHHhhcCCCceE-ecCCCC
Q psy14904 196 NYIELTKYLNVTPLG-RIPYLY 216 (233)
Q Consensus 196 ~~~~l~~~~~~pvlg-~IP~~~ 216 (233)
.++.+++.++.+... .+|...
T Consensus 145 ~~~~i~~~l~~~~~~~~~P~~~ 166 (687)
T PRK13351 145 VLEDIEERFGKRPLPLQLPIGS 166 (687)
T ss_pred HHHHHHHHHCCCeEEEEecccc
Confidence 778888887765543 355443
No 238
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.61 E-value=0.0038 Score=51.59 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=29.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
.+.|++. +|+||||++.+++..++++ |.+|+++.
T Consensus 32 ~~~i~g~-~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 32 LIILTAG-TGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4555555 9999999999999999887 99999986
No 239
>PRK14527 adenylate kinase; Provisional
Probab=96.61 E-value=0.0027 Score=49.79 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=27.2
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
|+.++.++|.|.|. +|+||||++..|+..+
T Consensus 1 ~~~~~~~~i~i~G~-pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 1 MTQTKNKVVIFLGP-PGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCCCCcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 77888889999999 9999999999998877
No 240
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.58 E-value=0.057 Score=49.97 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSE 30 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~ 30 (233)
.++++.|+|.+. .++||||++-.|...
T Consensus 4 ~~~iRNi~IiGh-vd~GKTTL~~rLl~~ 30 (600)
T PRK05433 4 MKNIRNFSIIAH-IDHGKSTLADRLIEL 30 (600)
T ss_pred cccCCEEEEECC-CCCCHHHHHHHHHHh
Confidence 346789999998 999999999888753
No 241
>PTZ00035 Rad51 protein; Provisional
Probab=96.57 E-value=0.024 Score=48.56 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=28.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
..++.|+|. +|+|||+++..|+..... .+.+|+++|
T Consensus 118 G~iteI~G~-~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 118 GSITELFGE-FRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred CeEEEEECC-CCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 346777776 999999999999877642 456999998
No 242
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.57 E-value=0.0043 Score=45.26 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=32.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.|+|. +|+|||+++..++..+.+.+.++.+++
T Consensus 19 ~~~v~i~G~-~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 19 PKNLLLYGP-PGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 457888888 999999999999999988888998887
No 243
>PRK06921 hypothetical protein; Provisional
Probab=96.56 E-value=0.0048 Score=51.10 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
...+++.|. +|+|||+++..+|..+.++ |++|+++.
T Consensus 117 ~~~l~l~G~-~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQ-PGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 457888887 9999999999999999988 99999886
No 244
>PRK06851 hypothetical protein; Provisional
Probab=96.56 E-value=0.0052 Score=53.03 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=31.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|+|. +|+||||+...++..+.++|++|.++-
T Consensus 215 ~~~~i~G~-pG~GKstl~~~i~~~a~~~G~~v~~~h 249 (367)
T PRK06851 215 NRYFLKGR-PGTGKSTMLKKIAKAAEERGFDVEVYH 249 (367)
T ss_pred eEEEEeCC-CCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45666666 999999999999999999999999985
No 245
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.55 E-value=0.0037 Score=50.30 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH--cCCeeeEE
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK--RGISCIGM 41 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~--~G~~Vl~~ 41 (233)
+|.|+|. +|+||||++..|+..|.. .+.+|.++
T Consensus 1 IigI~G~-sGSGKTTla~~L~~~l~~~~~~~~v~vi 35 (220)
T cd02025 1 IIGIAGS-VAVGKSTTARVLQALLSRWPDHPNVELI 35 (220)
T ss_pred CEEeeCC-CCCCHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 4788888 999999999999999976 45677664
No 246
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.55 E-value=0.0048 Score=49.95 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=31.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++.|++. +|+|||+++.+++....++|.+|+++.
T Consensus 26 ~~~~i~G~-~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 26 SLILIEGD-HGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred cEEEEECC-CCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 46777776 999999999999988888999999997
No 247
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.55 E-value=0.023 Score=48.25 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=28.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d 42 (233)
.++-|+|. +|+|||++|..++...+.. +.+|+|+|
T Consensus 103 ~vtei~G~-~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 103 SITEFYGE-FGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred cEEEEECC-CCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 45667776 9999999999999877643 34899998
No 248
>PLN02924 thymidylate kinase
Probab=96.54 E-value=0.0051 Score=49.49 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=33.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|+|-|. -|+||||.+..|+..|..+|++|.+..
T Consensus 15 ~g~~IviEGi-DGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 15 RGALIVLEGL-DRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 4568999998 999999999999999999999987664
No 249
>KOG3347|consensus
Probab=96.52 E-value=0.0022 Score=47.90 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.|.|||+ +|+||||++-.||..+
T Consensus 8 PNILvtGT-PG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGT-PGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCC-CCCCchhHHHHHHHHh
Confidence 46999999 9999999999999655
No 250
>PRK07933 thymidylate kinase; Validated
Probab=96.52 E-value=0.0054 Score=49.09 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|+|-|. -|+||||.+..|+..|..+|++|.+.+
T Consensus 2 ~IviEG~-dGsGKST~~~~L~~~L~~~g~~v~~~~ 35 (213)
T PRK07933 2 LIAIEGV-DGAGKRTLTEALRAALEARGRSVATLA 35 (213)
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5788888 899999999999999999999999876
No 251
>PRK00049 elongation factor Tu; Reviewed
Probab=96.52 E-value=0.052 Score=47.64 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=39.8
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.+++||+||.-. + .....-+.....-+++|+++..+-..+....+..+...+.+.+-+++||++
T Consensus 74 ~~~i~~iDtPG~~~--f---~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D 139 (396)
T PRK00049 74 KRHYAHVDCPGHAD--Y---VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CeEEEEEECCCHHH--H---HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecC
Confidence 45789999997521 1 001111111123467788776654445556667777788886656899998
No 252
>PRK06217 hypothetical protein; Validated
Probab=96.52 E-value=0.0026 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
..|+|+|. +|+||||++..|+..+
T Consensus 2 ~~I~i~G~-~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGA-SGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHc
Confidence 45899998 9999999999999877
No 253
>PRK05439 pantothenate kinase; Provisional
Probab=96.51 E-value=0.0054 Score=51.83 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=29.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
.-+|.|+|. +|+||||+|..|+..|.+. |.+|.++-
T Consensus 86 ~~iIgIaG~-~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 86 PFIIGIAGS-VAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 347889988 9999999999999999764 67787753
No 254
>PRK00089 era GTPase Era; Reviewed
Probab=96.50 E-value=0.36 Score=40.30 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=22.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.-.|+|.|. +|+||||+.-.|. |.++..+
T Consensus 5 ~g~V~iiG~-pn~GKSTLin~L~------g~~~~~v 33 (292)
T PRK00089 5 SGFVAIVGR-PNVGKSTLLNALV------GQKISIV 33 (292)
T ss_pred eEEEEEECC-CCCCHHHHHHHHh------CCceeec
Confidence 446888888 9999999987765 5566544
No 255
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.49 E-value=0.0048 Score=50.80 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=33.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-+++.|+|. +|+|||+++.+.+...+++|.+|+++-
T Consensus 23 g~~~lI~G~-pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 23 GSVVLITGP-PGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CcEEEEEcC-CCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 457888888 999999999999999999999999986
No 256
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.48 E-value=0.0052 Score=47.94 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=26.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH----------cCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK----------RGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~----------~G~~Vl~~d 42 (233)
...|++. +|+||||++..++..++. ++.+|++++
T Consensus 34 l~~i~g~-~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~ 77 (193)
T PF13481_consen 34 LTLIAGP-PGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYIS 77 (193)
T ss_dssp EEEEEEC-STSSHHHHHHHHHHHHHT---TT---------EEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEe
Confidence 4566666 999999999999999997 678999987
No 257
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.47 E-value=0.0035 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 9 YFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l 31 (233)
|+|+|. +|+||||++..|+..+
T Consensus 1 I~i~G~-~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGI-PGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEECC-CCCCHHHHHHHHHHHH
Confidence 678888 9999999999999998
No 258
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.46 E-value=0.0053 Score=49.39 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=29.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
.++.|+|. +|+|||+++..++..-+++ |.+|+++-
T Consensus 20 s~~li~G~-~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 20 SVVLISGP-PGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp SEEEEEES-TTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred cEEEEEeC-CCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 46788888 9999999999999998888 99999985
No 259
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0043 Score=49.45 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCCCC--ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 1 MINKN--FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 1 ~~~~~--~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
|+.++ ..+|.|+|. +|+||||+|..|...|... ++.++
T Consensus 1 m~~~~~~~iiIgIaG~-SgSGKTTva~~l~~~~~~~--~~~~I 40 (218)
T COG0572 1 MMKKPEKVIIIGIAGG-SGSGKTTVAKELSEQLGVE--KVVVI 40 (218)
T ss_pred CCCCCCceEEEEEeCC-CCCCHHHHHHHHHHHhCcC--cceEe
Confidence 44443 458889998 9999999999999999644 55554
No 260
>CHL00071 tufA elongation factor Tu
Probab=96.42 E-value=0.069 Score=47.08 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=41.3
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+++.+++||+||.- .+ .....-+.....-+++|.++..+-..+....+..+...+++.+=+++||++
T Consensus 73 ~~~~~~~iDtPGh~--~~---~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 73 ENRHYAHVDCPGHA--DY---VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred CCeEEEEEECCChH--HH---HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccC
Confidence 35578999999742 11 111111111223578888877655455666677777788875557899998
No 261
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.41 E-value=0.0073 Score=48.52 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|++. +|+|||+++..++....++|.+|+++.
T Consensus 16 g~~~li~G~-~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 16 GHVIVVIGE-YGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 346777776 999999999999999888999999997
No 262
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.41 E-value=0.097 Score=42.67 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=38.7
Q ss_pred CCCeEEEeccCcccCccCCC-C----chHHHH----HHhCCCEEEEEcCCCCcH-HHHHHHHHHHHhCCCcEEEEEEccc
Q psy14904 116 LTDVIILEGIGGFSVPFHDN-E----NSADLA----EKLGLPIILVIDLKIGCI-NNALLSLEAINSRGLKLIGWVANHT 185 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~-~----~~~~l~----~~~~~~vllV~~~~~~~~-~~~~~~~~~l~~~~~~i~GiVlN~~ 185 (233)
..|+.|||+||-...+.... . ..-+++ ..-+.-+++|+++..+-. .+.....+.++..+.+++|| +||.
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~V-iTK~ 202 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGV-ITKL 202 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEE-EECC
Confidence 38999999987653221110 0 111111 112234666666654322 23445566667778887755 9999
Q ss_pred C
Q psy14904 186 Q 186 (233)
Q Consensus 186 ~ 186 (233)
+
T Consensus 203 D 203 (240)
T smart00053 203 D 203 (240)
T ss_pred C
Confidence 8
No 263
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.39 E-value=0.0069 Score=49.19 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=32.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+++.|. .|+|||+++..++..+.++|++|.++.
T Consensus 46 ~~l~l~Gp-~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 46 GYIYLWSR-EGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 57888888 999999999999999999999999986
No 264
>PRK06761 hypothetical protein; Provisional
Probab=96.39 E-value=0.0042 Score=51.76 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=30.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.+.|.|+|. +|+||||++..|+..|..+|.++-.+
T Consensus 3 ~~lIvI~G~-~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 3 TKLIIIEGL-PGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 357888888 99999999999999999889988764
No 265
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.37 E-value=0.0074 Score=48.59 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=30.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|++. +|+|||+++.+++....++|.+|+++.
T Consensus 21 ~~~~i~G~-~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 21 FFVAVTGE-PGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred eEEEEECC-CCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 46777776 999999999999988888999999987
No 266
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.36 E-value=0.0082 Score=46.28 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 16 TNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 16 ggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|.||||.+.++|...+.+|++|+++.
T Consensus 14 ~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 14 NGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 799999999999999999999998864
No 267
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.36 E-value=0.0063 Score=50.09 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
+.|.+..+|+|||+++.++|..++.+ |++|++|-
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S 55 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS 55 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc
Confidence 44555559999999999999999997 69999986
No 268
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.35 E-value=0.062 Score=48.47 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=34.3
Q ss_pred CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+|-|+||| -=+|.||=.+++.|+..|..+|++|..+|
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K 39 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQK 39 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEe
Confidence 478899998 45899999999999999999999999976
No 269
>PRK05642 DNA replication initiation factor; Validated
Probab=96.34 E-value=0.0073 Score=49.04 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=31.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+++.|. .|+|||.++..++..+.++|++|.++.
T Consensus 46 ~~l~l~G~-~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGK-DGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 46788888 999999999999999999999999987
No 270
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.34 E-value=0.0079 Score=48.88 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=31.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-..+.|+|. +|+|||+++..++...+++|.+++++-
T Consensus 21 gs~~lI~G~-pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 21 RNVVLLSGG-PGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 356777887 999999999999988888999999986
No 271
>PTZ00301 uridine kinase; Provisional
Probab=96.33 E-value=0.0052 Score=49.07 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
..+|.|+|. +|+||||+|..|+..|.++
T Consensus 3 ~~iIgIaG~-SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGA-SGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECC-CcCCHHHHHHHHHHHHHhh
Confidence 468999999 9999999999999888654
No 272
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.31 E-value=0.0086 Score=47.13 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=31.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|+|.|. .|+||||++..|+..|...|+.+....
T Consensus 3 ~~~I~ieG~-~gsGKsT~~~~L~~~l~~~~~~~~~~~ 38 (205)
T PRK00698 3 GMFITIEGI-DGAGKSTQIELLKELLEQQGRDVVFTR 38 (205)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCceeEee
Confidence 468999998 999999999999999999998777654
No 273
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.30 E-value=0.006 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=27.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||.+|.+||. .|+||||++- .|+..|+.|.-.|
T Consensus 1 ~~~iIglTG~-igsGKStva~----~~~~~G~~vidaD 33 (201)
T COG0237 1 MMLIIGLTGG-IGSGKSTVAK----ILAELGFPVIDAD 33 (201)
T ss_pred CceEEEEecC-CCCCHHHHHH----HHHHcCCeEEEcc
Confidence 5789999999 9999999984 4455689997766
No 274
>COG4240 Predicted kinase [General function prediction only]
Probab=96.30 E-value=0.0067 Score=48.60 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=29.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcC-CeeeEE
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRG-ISCIGM 41 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G-~~Vl~~ 41 (233)
++.|+|+ .|+||||+++.|-..|+++| ++++.+
T Consensus 52 i~gisGp-QGSGKStls~~i~~~L~~kg~ert~~l 85 (300)
T COG4240 52 IVGISGP-QGSGKSTLSALIVRLLAAKGLERTATL 85 (300)
T ss_pred EEEeecC-CCCchhhHHHHHHHHHHHhcccceEEe
Confidence 6777777 99999999999999999998 788875
No 275
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.29 E-value=0.085 Score=42.51 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=47.5
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN 194 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~ 194 (233)
.++-+.+||+||.-. .... ....+......-+++|.++..+-..+....++.+...++++ -+|+||++.-......
T Consensus 82 ~~~~i~liDtpG~~~--~~~~-~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 82 SSKLVTFIDLAGHER--YLKT-TLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDLAPANILQ 157 (224)
T ss_pred CCcEEEEEECCCcHH--HHHH-HHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccccCHHHHH
Confidence 467899999997521 1000 00011100112367777776554455566677777888885 5889999821122233
Q ss_pred hhHHHHHhhcC
Q psy14904 195 ENYIELTKYLN 205 (233)
Q Consensus 195 ~~~~~l~~~~~ 205 (233)
...+.+++.+.
T Consensus 158 ~~~~~l~~~L~ 168 (224)
T cd04165 158 ETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHhc
Confidence 44555555443
No 276
>PF13479 AAA_24: AAA domain
Probab=96.29 E-value=0.025 Score=45.18 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-.++|.|. +|+||||++..+ .+++++|
T Consensus 4 ~~~lIyG~-~G~GKTt~a~~~--------~k~l~id 30 (213)
T PF13479_consen 4 IKILIYGP-PGSGKTTLAASL--------PKPLFID 30 (213)
T ss_pred eEEEEECC-CCCCHHHHHHhC--------CCeEEEE
Confidence 45788888 999999998777 7899988
No 277
>PF05729 NACHT: NACHT domain
Probab=96.27 E-value=0.0056 Score=46.11 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=24.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGI 36 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~ 36 (233)
+++.|+|. +|+||||++..++..+++.+.
T Consensus 1 r~l~I~G~-~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 1 RVLWISGE-PGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred CEEEEECC-CCCChHHHHHHHHHHHHhcCc
Confidence 35667776 999999999999999998864
No 278
>PRK13947 shikimate kinase; Provisional
Probab=96.26 E-value=0.0048 Score=47.23 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=24.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
|+.|++.|. +|+||||++..||..| |++.
T Consensus 1 m~~I~l~G~-~GsGKst~a~~La~~l---g~~~ 29 (171)
T PRK13947 1 MKNIVLIGF-MGTGKTTVGKRVATTL---SFGF 29 (171)
T ss_pred CCeEEEEcC-CCCCHHHHHHHHHHHh---CCCE
Confidence 456999999 9999999999999888 6554
No 279
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.26 E-value=0.0098 Score=46.92 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=29.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP 43 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp 43 (233)
++..|.|. +|+||||+...+...+..+|++|.++-|
T Consensus 19 ~~~~l~G~-aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQGP-AGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEEES-TTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEEEC-CCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 46777777 9999999999999999999999999763
No 280
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.25 E-value=0.01 Score=47.51 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=31.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..++..+.+.|.++.+++
T Consensus 38 ~~~lll~G~-~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 38 DRFLYLWGE-SGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 457888887 899999999999999988898988886
No 281
>PRK08116 hypothetical protein; Validated
Probab=96.25 E-value=0.0091 Score=49.52 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=30.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+++.|. +|+|||.++..++..+.++|++|.++.
T Consensus 116 gl~l~G~-~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 116 GLLLWGS-VGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4888887 999999999999999999999998875
No 282
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.24 E-value=0.0068 Score=47.69 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|.|+|. +|+||||++..|+..+ .+.++.++.
T Consensus 1 iigi~G~-~GsGKSTl~~~l~~~l--~~~~~~v~~ 32 (198)
T cd02023 1 IIGIAGG-SGSGKTTVAEEIIEQL--GNPKVVIIS 32 (198)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence 4788898 9999999999999998 455666654
No 283
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.22 E-value=0.025 Score=48.13 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=30.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++++..|||. -|+||||+-.+|... ..|.|++++-
T Consensus 3 ~ipv~iltGF-LGaGKTTll~~ll~~--~~~~riaVi~ 37 (318)
T PRK11537 3 PIAVTLLTGF-LGAGKTTLLRHILNE--QHGYKIAVIE 37 (318)
T ss_pred ccCEEEEEEC-CCCCHHHHHHHHHhc--ccCCcccccc
Confidence 6789999999 999999999999864 4688999875
No 284
>KOG3220|consensus
Probab=96.22 E-value=0.0076 Score=47.24 Aligned_cols=29 Identities=38% Similarity=0.499 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
|.++.+||. -++||||++ ..|.+.|..|.
T Consensus 1 M~iVGLTGg-iatGKStVs----~~f~~~G~~vI 29 (225)
T KOG3220|consen 1 MLIVGLTGG-IATGKSTVS----QVFKALGIPVI 29 (225)
T ss_pred CeEEEeecc-cccChHHHH----HHHHHcCCcEe
Confidence 567889998 899999987 45566777663
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.21 E-value=0.054 Score=42.84 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|+|. .|+||||+...+...+... .++.++.
T Consensus 3 ~i~i~G~-~GsGKTTll~~l~~~l~~~-~~~~~~~ 35 (199)
T TIGR00101 3 KIGVAGP-VGSGKTALIEALTRALRQK-YQLAVIT 35 (199)
T ss_pred EEEEECC-CCCCHHHHHHHHHHhhCcC-CcEEEEe
Confidence 4788888 9999999999999888754 4566654
No 286
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.20 E-value=0.0057 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
|+.|+|+|. .|+||||++..||..+
T Consensus 2 ~~~i~~~G~-~GsGKst~~~~la~~l 26 (171)
T PRK03731 2 TQPLFLVGA-RGCGKTTVGMALAQAL 26 (171)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHh
Confidence 467999988 9999999999999887
No 287
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.16 E-value=0.045 Score=51.76 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|.|. +|+||||++..++...+++|.+|+++|
T Consensus 60 GsiteI~G~-~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 60 GRVIEIYGP-ESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 346667776 999999999999999889999999998
No 288
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.15 E-value=0.066 Score=45.98 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=25.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
.++-|+|. +|+|||++|..|+...+. .+.+|+|+|
T Consensus 124 ~i~~i~G~-~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 124 SITEIYGE-FRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred eEEEEECC-CCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 34556665 999999999999965442 123899998
No 289
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.15 E-value=0.011 Score=47.62 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=31.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+++.|. .|+|||+++..++..+.++|.++.+++
T Consensus 43 ~~~~l~G~-~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 43 RFFYLWGE-AGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 46778887 999999999999999989999999987
No 290
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.13 E-value=0.1 Score=41.45 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
+.|+|.|. .|+||||++-.|......
T Consensus 1 rnv~iiG~-~~~GKTtL~~~l~~~~~~ 26 (213)
T cd04167 1 RNVAIAGH-LHHGKTSLLDMLIEQTHD 26 (213)
T ss_pred CcEEEEcC-CCCCHHHHHHHHHHhcCC
Confidence 35788888 999999999999876543
No 291
>PRK06547 hypothetical protein; Provisional
Probab=96.13 E-value=0.0083 Score=46.33 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=26.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+..|.|+|. +|+||||++..|+..+ |..++-.|
T Consensus 14 ~~~~i~i~G~-~GsGKTt~a~~l~~~~---~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGR-SGSGKTTLAGALAART---GFQLVHLD 47 (172)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHh---CCCeeccc
Confidence 4567888887 9999999999999874 55554444
No 292
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.13 E-value=0.042 Score=47.21 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=30.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+++++..|+|. -|+||||+-.+|... .+|.|++++-
T Consensus 2 ~~ipv~iltGF-LGaGKTTll~~ll~~--~~~~~iavi~ 37 (341)
T TIGR02475 2 AKIPVTIVTGF-LGAGKTTLIRHLLQN--AAGRRIAVIV 37 (341)
T ss_pred CccCEEEEEEC-CCCCHHHHHHHHHhc--cCCCcEEEEE
Confidence 35788999998 999999999998864 4688999875
No 293
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.12 E-value=0.0093 Score=53.69 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=30.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++.|+|. +|+||||++..++...+++|.+++|+-
T Consensus 264 s~~li~G~-~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 264 SIILATGA-TGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35666666 999999999999999999999999974
No 294
>KOG1534|consensus
Probab=96.12 E-value=0.018 Score=45.66 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+|.|+ .|+||||.|.++......-|+++-++.
T Consensus 5 a~lV~Gp-AgSGKSTyC~~~~~h~e~~gRs~~vVN 38 (273)
T KOG1534|consen 5 AQLVMGP-AGSGKSTYCSSMYEHCETVGRSVHVVN 38 (273)
T ss_pred eEEEEcc-CCCCcchHHHHHHHHHHhhCceeEEee
Confidence 4677888 899999999999999999999888764
No 295
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.038 Score=43.26 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=67.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
++.+..+++|+ -++|||+--+.-++.+..+|.+|++++|-...... ...+....|+..+ ...
T Consensus 2 ~~g~l~~i~gp-M~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~-----------~~~V~Sr~G~~~~------A~~ 63 (201)
T COG1435 2 KMGWLEFIYGP-MFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYG-----------VGKVSSRIGLSSE------AVV 63 (201)
T ss_pred ceEEEEEEEcc-CcCcchHHHHHHHHHHHHcCCeEEEEecccccccc-----------cceeeeccCCccc------cee
Confidence 34577889999 99999999999999999999999999964321111 0111222332211 011
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcC--CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNL--TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL 151 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll 151 (233)
+. ....+.+.+.+.... .|.|+||=+-.+..-+ .....+++..++.||+.
T Consensus 64 i~----------------~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~--v~~l~~lad~lgi~Vi~ 115 (201)
T COG1435 64 IP----------------SDTDIFDEIAALHEKPPVDCVLIDEAQFFDEEL--VYVLNELADRLGIPVIC 115 (201)
T ss_pred cC----------------ChHHHHHHHHhcccCCCcCEEEEehhHhCCHHH--HHHHHHHHhhcCCEEEE
Confidence 11 123455555554333 7899999875554322 23456677776766553
No 296
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.11 E-value=0.032 Score=42.97 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=25.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++|+|. +|+|||+.|..|+..+ |.++.++.
T Consensus 3 ~ili~G~-~~sGKS~~a~~l~~~~---~~~~~~ia 33 (170)
T PRK05800 3 LILVTGG-ARSGKSRFAERLAAQS---GLQVLYIA 33 (170)
T ss_pred EEEEECC-CCccHHHHHHHHHHHc---CCCcEeCc
Confidence 5889988 9999999999988664 55666654
No 297
>PRK12736 elongation factor Tu; Reviewed
Probab=96.09 E-value=0.098 Score=45.88 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=39.5
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.+.+||+||.-. + .....-......-+++|+++..+-..+....+..++..+++.+-+++||++
T Consensus 74 ~~~i~~iDtPGh~~--f---~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D 139 (394)
T PRK12736 74 KRHYAHVDCPGHAD--Y---VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVD 139 (394)
T ss_pred CcEEEEEECCCHHH--H---HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecC
Confidence 56789999997421 1 011111111123467788876654445556666677778875667899998
No 298
>COG1159 Era GTPase [General function prediction only]
Probab=96.06 E-value=0.27 Score=40.99 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++|.|. +++||||+.-+|. |.++.++-
T Consensus 8 fVaIiGr-PNvGKSTLlN~l~------G~KisIvS 35 (298)
T COG1159 8 FVAIIGR-PNVGKSTLLNALV------GQKISIVS 35 (298)
T ss_pred EEEEEcC-CCCcHHHHHHHHh------cCceEeec
Confidence 5777777 9999999987664 89999875
No 299
>KOG2749|consensus
Probab=96.03 E-value=0.041 Score=46.89 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=34.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++++|.|+ ..+||||+|.-|..+..+.|+++++++
T Consensus 102 ~GPrv~vVGp-~d~GKsTl~r~L~nyavk~gr~Plfv~ 138 (415)
T KOG2749|consen 102 YGPRVMVVGP-TDVGKSTLCRILLNYAVKQGRRPLFVE 138 (415)
T ss_pred cCCEEEEECC-CccchHHHHHHHHHHHHHcCCcceEEE
Confidence 3678999998 899999999999999999999999987
No 300
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.02 E-value=0.0076 Score=48.02 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH--------HHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEF--------KKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l--------~~~G~~Vl~~d 42 (233)
.+|.|+ +|+|||++.+.++..+ ...+.+++++-
T Consensus 20 ~~i~Gp-PGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 20 TLIQGP-PGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp EEEE-S-TTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred EEEECC-CCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 556666 9999999999999998 56788999975
No 301
>PRK13973 thymidylate kinase; Provisional
Probab=96.02 E-value=0.016 Score=46.33 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|+|-|. .|+||||.+..|+.+|..+|++|.+..
T Consensus 3 g~~IviEG~-dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 3 GRFITFEGG-EGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred ceEEEEEcC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 357888888 999999999999999999999998875
No 302
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.01 E-value=0.0086 Score=52.51 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=28.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
..-|.|+|. +|.||||.+.+||.+++.+|+=|
T Consensus 263 aeGILIAG~-PGaGKsTFaqAlAefy~~~GkiV 294 (604)
T COG1855 263 AEGILIAGA-PGAGKSTFAQALAEFYASQGKIV 294 (604)
T ss_pred hcceEEecC-CCCChhHHHHHHHHHHHhcCcEE
Confidence 456899999 99999999999999999999844
No 303
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.00 E-value=0.25 Score=43.33 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=39.4
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.+.+||+||.-. +.. ....-+... .-+++|.+...+-..++...+..+...+++.+=+++||++
T Consensus 74 ~~~~~liDtpGh~~--f~~--~~~~~~~~~-D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~D 139 (394)
T TIGR00485 74 NRHYAHVDCPGHAD--YVK--NMITGAAQM-DGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCD 139 (394)
T ss_pred CEEEEEEECCchHH--HHH--HHHHHHhhC-CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence 45688999997521 100 011111112 2467788877654445566666777778886656899998
No 304
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=95.99 E-value=0.0059 Score=54.78 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=26.3
Q ss_pred CceeEEEEe---CCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITG---TNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~---~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
+.|-|.||+ +.-|.||||++.+|+.+|.+.|+++.+.
T Consensus 53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~ 92 (557)
T PF01268_consen 53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAA 92 (557)
T ss_dssp --EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEE
T ss_pred CCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEE
Confidence 356666654 7789999999999999999999988763
No 305
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.98 E-value=0.0084 Score=46.47 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++++|+|.|. +|+||||++..|+..+
T Consensus 2 ~~~ii~i~G~-~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGG-PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 4678999999 9999999999999876
No 306
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.97 E-value=0.0085 Score=45.59 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
|+|+|+ .|+||||++..|+.. |..+
T Consensus 2 I~i~G~-~stGKTTL~~~L~~~----g~~~ 26 (163)
T PF13521_consen 2 IVITGG-PSTGKTTLIEALAAR----GYPV 26 (163)
T ss_dssp EEEE---TTSHHHHHHHHHHHH----T-EE
T ss_pred EEEECC-CCCCHHHHHHHHHHc----CCeE
Confidence 889999 999999999999966 6654
No 307
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.97 E-value=0.014 Score=42.26 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=27.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-----GISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-----G~~Vl~~d 42 (233)
.-+.++|.|. +|+|||+++..++..+... ..+++.+.
T Consensus 3 ~~~~~~i~G~-~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (131)
T PF13401_consen 3 SQRILVISGP-PGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN 44 (131)
T ss_dssp ----EEEEE--TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCcccEEEcC-CCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE
Confidence 3456788888 9999999999999999875 66777766
No 308
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.95 E-value=0.0088 Score=45.66 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|.++|. +|+||||++..||..|
T Consensus 4 ~~~i~l~G~-~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGF-MGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcC-CCCCHHHHHHHHHHHh
Confidence 347888888 9999999999999998
No 309
>PRK06851 hypothetical protein; Provisional
Probab=95.94 E-value=0.02 Score=49.46 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=29.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.+++.++|. +|+||||+...++..+.++|++|-++
T Consensus 30 ~~~~il~G~-pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 30 NRIFILKGG-PGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 355666666 99999999999999999999998875
No 310
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.94 E-value=0.012 Score=50.45 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
++++|. +|+||||++..|+..|. .+|++|.+++
T Consensus 2 ~~l~Gl-~GaGKST~~~~l~~~l~~~~g~~v~~~~ 35 (340)
T TIGR03575 2 CVLCGL-PAAGKSTLARSLSATLRRERGWAVAVIT 35 (340)
T ss_pred eEEECC-CCCCHHHHHHHHHHHHHhccCCeEEEEc
Confidence 456777 99999999999999998 5899999986
No 311
>PRK05595 replicative DNA helicase; Provisional
Probab=95.93 E-value=0.012 Score=52.47 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=28.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
.+.|++. +|+|||++++++|..++ ++|++|++|-
T Consensus 203 liviaar-pg~GKT~~al~ia~~~a~~~g~~vl~fS 237 (444)
T PRK05595 203 MILIAAR-PSMGKTTFALNIAEYAALREGKSVAIFS 237 (444)
T ss_pred EEEEEec-CCCChHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3445555 99999999999999877 5799999986
No 312
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.92 E-value=0.063 Score=47.88 Aligned_cols=67 Identities=15% Similarity=0.038 Sum_probs=41.8
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcH-------HHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCI-------NNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~-------~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+++.+.|||+||... +. .....+.....-+++|+++..+.. .++...+..++..+++-+-+++||++
T Consensus 83 ~~~~i~lIDtPGh~~--f~---~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD--FI---KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred CCeEEEEEECCChHH--HH---HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 467899999997431 10 111111112234677777765432 35666777777889886778999998
No 313
>PRK07261 topology modulation protein; Provisional
Probab=95.91 E-value=0.0086 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.|+|+|. +|+||||++..|+..+
T Consensus 2 ri~i~G~-~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGY-SGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHh
Confidence 4889998 9999999999987665
No 314
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.89 E-value=0.019 Score=49.71 Aligned_cols=39 Identities=26% Similarity=0.524 Sum_probs=33.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~ 45 (233)
...++|+|. +|+|||++...|...+..+|++|++.=|.+
T Consensus 22 ~~~~fv~G~-~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg 60 (364)
T PF05970_consen 22 GLNFFVTGP-AGTGKSFLIKAIIDYLRSRGKKVLVTAPTG 60 (364)
T ss_pred CcEEEEEcC-CCCChhHHHHHHHHHhccccceEEEecchH
Confidence 456788888 999999999999999999899998876543
No 315
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.14 Score=45.44 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=32.5
Q ss_pred ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|-|+||| -=+|.||=.+|+.|+..|..+|++|..+|
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~K 38 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQK 38 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEe
Confidence 46788887 34789999999999999999999999976
No 316
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.87 E-value=0.0085 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+|+|+|+ +|+||||++..|+..+
T Consensus 1 ~I~i~G~-~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGP-AGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHh
Confidence 4788888 9999999999999876
No 317
>PRK04328 hypothetical protein; Provisional
Probab=95.86 E-value=0.017 Score=47.41 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=31.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-.++.|+|. +|+|||+++..++..-+++|.+++++.
T Consensus 23 gs~ili~G~-pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 23 RNVVLLSGG-PGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CcEEEEEcC-CCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 346778887 999999999999988888899999986
No 318
>PLN03126 Elongation factor Tu; Provisional
Probab=95.84 E-value=0.19 Score=45.29 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=41.1
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.+.+||+||.-. + ..+..-......-+++|.++..+-..++...+..+...+++.+-+++||++
T Consensus 143 ~~~i~liDtPGh~~--f---~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~D 208 (478)
T PLN03126 143 NRHYAHVDCPGHAD--Y---VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQD 208 (478)
T ss_pred CcEEEEEECCCHHH--H---HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 56789999997521 1 011111111223567788877655455666677777788875667899998
No 319
>PRK08760 replicative DNA helicase; Provisional
Probab=95.84 E-value=0.015 Score=52.17 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=28.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
.+.|++. +|+|||++++++|...+. .|++|++|-
T Consensus 231 LivIaar-Pg~GKTafal~iA~~~a~~~g~~V~~fS 265 (476)
T PRK08760 231 LIILAAR-PAMGKTTFALNIAEYAAIKSKKGVAVFS 265 (476)
T ss_pred eEEEEeC-CCCChhHHHHHHHHHHHHhcCCceEEEe
Confidence 4555555 999999999999998875 599999985
No 320
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.84 E-value=0.014 Score=51.65 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
.+.|++. +|+|||+++.++|..++ ++|++|++|.
T Consensus 196 liviag~-pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 196 LIVIGAR-PSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred eEEEEeC-CCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4555555 99999999999999888 6799999986
No 321
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.84 E-value=0.015 Score=50.92 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=30.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.-+|.|+|. .|+||||++..|...+...|+++..+
T Consensus 212 PlIIGIsG~-qGSGKSTLa~~L~~lL~~~g~~vgvI 246 (460)
T PLN03046 212 PLVIGFSAP-QGCGKTTLVFALDYLFRVTGRKSATL 246 (460)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHhcccCCceEEE
Confidence 347788888 99999999999999998888888776
No 322
>PRK13949 shikimate kinase; Provisional
Probab=95.82 E-value=0.0097 Score=45.79 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
|+.|+|.|. +|+||||++..||..+
T Consensus 1 m~~I~liG~-~GsGKstl~~~La~~l 25 (169)
T PRK13949 1 MARIFLVGY-MGAGKTTLGKALAREL 25 (169)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 457999999 9999999999999988
No 323
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.0091 Score=45.27 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
+|+|+|. +|+||||+|.-||..+ |++..
T Consensus 2 ~ItIsG~-pGsG~TTva~~lAe~~---gl~~v 29 (179)
T COG1102 2 VITISGL-PGSGKTTVARELAEHL---GLKLV 29 (179)
T ss_pred EEEeccC-CCCChhHHHHHHHHHh---CCcee
Confidence 4777777 9999999999999887 66553
No 324
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=95.79 E-value=0.011 Score=50.12 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=34.3
Q ss_pred CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.|-| +=||.|||-++.-||..|.++|.++.++.
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS 84 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS 84 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEe
Confidence 457888888 56999999999999999999999999985
No 325
>PRK12735 elongation factor Tu; Reviewed
Probab=95.79 E-value=0.14 Score=44.94 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=38.1
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+..+.+||+||.-. + .....-+.....-+++|.++..+-..++...+..+...+++.+-+++||++
T Consensus 74 ~~~i~~iDtPGh~~--f---~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~D 139 (396)
T PRK12735 74 NRHYAHVDCPGHAD--Y---VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CcEEEEEECCCHHH--H---HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecC
Confidence 44689999997421 0 001111111112467777776554444555666667778886656799998
No 326
>PRK01184 hypothetical protein; Provisional
Probab=95.77 E-value=0.014 Score=45.37 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
|++|.++|. +|+||||++. + +++.|+.+.-
T Consensus 1 ~~~i~l~G~-~GsGKsT~a~-~---~~~~g~~~i~ 30 (184)
T PRK01184 1 MKIIGVVGM-PGSGKGEFSK-I---AREMGIPVVV 30 (184)
T ss_pred CcEEEEECC-CCCCHHHHHH-H---HHHcCCcEEE
Confidence 568999999 9999999864 3 4556876644
No 327
>PLN02796 D-glycerate 3-kinase
Probab=95.76 E-value=0.015 Score=49.66 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=28.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
-+|.|+|. .|+||||++..|...+...|+++..+
T Consensus 101 liIGI~G~-sGSGKSTLa~~L~~lL~~~g~~~g~I 134 (347)
T PLN02796 101 LVIGISAP-QGCGKTTLVFALVYLFNATGRRAASL 134 (347)
T ss_pred EEEEEECC-CCCcHHHHHHHHHHHhcccCCceeEE
Confidence 35888887 99999999999999998878777654
No 328
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.76 E-value=0.018 Score=41.64 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=24.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|.+.|. +|+|||+++..+|..+ |..+..++
T Consensus 1 ill~G~-~G~GKT~l~~~la~~l---~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGP-PGTGKTTLARALAQYL---GFPFIEID 30 (132)
T ss_dssp EEEESS-TTSSHHHHHHHHHHHT---TSEEEEEE
T ss_pred CEEECc-CCCCeeHHHHHHHhhc---cccccccc
Confidence 467777 9999999999999998 56676665
No 329
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.75 E-value=0.097 Score=44.50 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=26.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH---cC---CeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK---RG---ISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~---~G---~~Vl~~d 42 (233)
..++.|.|. +|+|||+++..++...+. .| .+|+++|
T Consensus 96 g~i~~i~G~-~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId 137 (316)
T TIGR02239 96 GSITEIFGE-FRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID 137 (316)
T ss_pred CeEEEEECC-CCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence 345666665 999999999999874332 33 4889998
No 330
>PRK08506 replicative DNA helicase; Provisional
Probab=95.74 E-value=0.016 Score=52.02 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=29.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|.+..+|+|||+++.++|...+++|++|++|-
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS 227 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS 227 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe
Confidence 4444445999999999999999999999999985
No 331
>PLN02327 CTP synthase
Probab=95.70 E-value=0.22 Score=45.22 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=33.0
Q ss_pred ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||-|+||| -=.|.||=.+++.|+..|..+|++|..+|
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K 38 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIK 38 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeee
Confidence 37788887 45899999999999999999999999976
No 332
>PRK03839 putative kinase; Provisional
Probab=95.69 E-value=0.012 Score=45.50 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.|+|+|. +|+||||++..||..+
T Consensus 2 ~I~l~G~-pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGT-PGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4889998 9999999999998887
No 333
>PRK12338 hypothetical protein; Provisional
Probab=95.68 E-value=0.011 Score=50.02 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=23.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.+|+|+|+ +|+||||+|..||..+ |.+.
T Consensus 5 ~ii~i~G~-sGsGKST~a~~la~~l---~~~~ 32 (319)
T PRK12338 5 YVILIGSA-SGIGKSTIASELARTL---NIKH 32 (319)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHC---CCeE
Confidence 47888887 9999999999999887 5544
No 334
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.67 E-value=0.022 Score=50.48 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
.+.|++. +|+|||+++.+++..++. .|++|++|-
T Consensus 197 l~vi~g~-pg~GKT~~~l~~a~~~a~~~g~~vl~~S 231 (434)
T TIGR00665 197 LIILAAR-PSMGKTAFALNIAENAAIKEGKPVAFFS 231 (434)
T ss_pred EEEEEeC-CCCChHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4555555 999999999999999886 699999985
No 335
>PF13173 AAA_14: AAA domain
Probab=95.67 E-value=0.019 Score=41.88 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-++++|+|. -||||||+...++..+. ...++++++
T Consensus 2 ~~~~~l~G~-R~vGKTtll~~~~~~~~-~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGP-RGVGKTTLLKQLAKDLL-PPENILYIN 36 (128)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHhc-ccccceeec
Confidence 367899999 89999999999998887 567888876
No 336
>PRK14528 adenylate kinase; Provisional
Probab=95.67 E-value=0.013 Score=45.75 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=24.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
|+.|.|+|. +|+||||+|..|+..+ |..+..
T Consensus 1 ~~~i~i~G~-pGsGKtt~a~~la~~~---~~~~is 31 (186)
T PRK14528 1 MKNIIFMGP-PGAGKGTQAKILCERL---SIPQIS 31 (186)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh---CCCeee
Confidence 467889998 9999999999998776 555433
No 337
>PRK14530 adenylate kinase; Provisional
Probab=95.65 E-value=0.013 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.|+|.|. +|+||||++..||..+
T Consensus 5 ~I~i~G~-pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGA-PGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 6899999 9999999999999887
No 338
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.65 E-value=0.024 Score=45.13 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=28.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA 48 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~ 48 (233)
|+++.|.|+ +|+|||.++..||..+ |..|...|-+++..
T Consensus 1 M~v~~i~Gp-T~tGKt~~ai~lA~~~---g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 1 MKVYLIVGP-TGTGKTALAIALAQKT---GAPVISLDRIQCYP 39 (233)
T ss_dssp -EEEEEE-S-TTSSHHHHHHHHHHHH-----EEEEE-SGGG-G
T ss_pred CcEEEEECC-CCCChhHHHHHHHHHh---CCCEEEecceeccc
Confidence 688999999 9999999999999877 88999998655433
No 339
>PRK06749 replicative DNA helicase; Provisional
Probab=95.64 E-value=0.017 Score=51.19 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=29.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|.+..+|.|||++++++|...+++|++|++|-
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fS 221 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFS 221 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEE
Confidence 4455555999999999999999999999999986
No 340
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.64 E-value=0.021 Score=44.90 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=25.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||..|.|||. .|+||||++..|+. .|..+.-.|
T Consensus 1 ~~~~i~ltG~-~gsGKst~~~~l~~----~g~~~i~~D 33 (194)
T PRK00081 1 MMLIIGLTGG-IGSGKSTVANLFAE----LGAPVIDAD 33 (194)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHH----cCCEEEEec
Confidence 3578999999 99999999987765 477765444
No 341
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.63 E-value=0.049 Score=44.83 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=28.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
.+.=|+|. +|+|||.+|..|+..-.. .+.+|+|+|
T Consensus 39 ~itEi~G~-~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 39 SITEIVGE-SGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp SEEEEEES-TTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred cEEEEEEe-cccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 46678888 999999999999876542 256999998
No 342
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=95.62 E-value=0.22 Score=44.97 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=33.0
Q ss_pred ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||-|+||| -=.|.||=.+++.|+..|..+|++|..+|
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K 38 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIK 38 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEe
Confidence 47788887 45899999999999999999999999976
No 343
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.38 Score=42.37 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++=+=|+||||.-. +.+ .......+.| ..++|.++..|--.+++...+..+-++++|+-+ +||.+ ...+..-+
T Consensus 80 ~~~iNLLDTPGHeD--FSE--DTYRtLtAvD-sAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TF-iNKlD-R~~rdP~E 152 (528)
T COG4108 80 DCLVNLLDTPGHED--FSE--DTYRTLTAVD-SAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTF-INKLD-REGRDPLE 152 (528)
T ss_pred CeEEeccCCCCccc--cch--hHHHHHHhhh-eeeEEEecccCccHHHHHHHHHHhhcCCceEEE-eeccc-cccCChHH
Confidence 45566889987631 221 2233333333 468888887754456677777778889997754 89998 33333446
Q ss_pred hHHHHHhhcCC
Q psy14904 196 NYIELTKYLNV 206 (233)
Q Consensus 196 ~~~~l~~~~~~ 206 (233)
.++++++.+++
T Consensus 153 LLdEiE~~L~i 163 (528)
T COG4108 153 LLDEIEEELGI 163 (528)
T ss_pred HHHHHHHHhCc
Confidence 78888887665
No 344
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.032 Score=44.41 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=33.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|+|-|. =|+||||.+..|+..|..+|++|.+.+
T Consensus 2 ~g~fI~iEGi-DGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 2 KGMFIVIEGI-DGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3567888888 899999999999999999999999876
No 345
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.57 E-value=0.42 Score=42.14 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=24.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++|+|.|. ++|||||+--.|+ |.|+.++.
T Consensus 4 ~~VAIVGR-PNVGKSTLFNRL~------g~r~AIV~ 32 (444)
T COG1160 4 PVVAIVGR-PNVGKSTLFNRLT------GRRIAIVS 32 (444)
T ss_pred CEEEEECC-CCCcHHHHHHHHh------CCeeeEee
Confidence 68999998 9999999875553 78888886
No 346
>PRK14531 adenylate kinase; Provisional
Probab=95.56 E-value=0.016 Score=45.08 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.|.|.|. +|+||||++..||..+
T Consensus 3 ~~i~i~G~-pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGP-PGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46888888 9999999999999886
No 347
>PRK08006 replicative DNA helicase; Provisional
Probab=95.55 E-value=0.022 Score=51.11 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
+.|.+..+|.|||+++.|+|...+. +|++|++|-
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fS 260 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFS 260 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4455555999999999999999884 699999985
No 348
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.53 E-value=0.014 Score=45.98 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=24.6
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
|+.+ .+.|+|+|. +|+||||++..|+..+.
T Consensus 1 ~~~~-g~~i~i~G~-sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 1 MMRR-GLLIVLSGP-SGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCC-CCEEEEECC-CCCCHHHHHHHHHhhCc
Confidence 4443 568999998 99999999999988764
No 349
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.53 E-value=0.012 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+|+|+|. +|+||||+|..||..+
T Consensus 1 ~i~i~G~-pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGG-PGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHc
Confidence 4788888 9999999999999877
No 350
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=95.53 E-value=0.0092 Score=53.54 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=30.2
Q ss_pred ceeEEEE---eCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFIT---GTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~---~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.|.|.|| .+.-|.||||++.+|+.+|.+.|+++.+.
T Consensus 63 gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~ 101 (587)
T PRK13507 63 GKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGA 101 (587)
T ss_pred CeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEE
Confidence 4556555 47789999999999999999999998874
No 351
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.53 E-value=0.012 Score=46.17 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+|.|+|. +|+||||+|..|+..+
T Consensus 1 ii~i~G~-sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGV-TNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHc
Confidence 4778877 9999999999999987
No 352
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.52 E-value=0.029 Score=43.30 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
+..++.++|+ +|||||.++..||..|. ....+...+|
T Consensus 2 p~~~~ll~Gp-sGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 2 PKSNFLLAGP-SGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp -SEEEEEESS-TTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred CEEEEEEECC-CCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 4668999999 99999999999999998 5666777777
No 353
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.49 E-value=0.028 Score=45.40 Aligned_cols=35 Identities=17% Similarity=0.052 Sum_probs=28.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
+..++.|+|. .|+||||++..|+..+...+-.+.+
T Consensus 32 ~~~iigi~G~-~GsGKTTl~~~L~~~l~~~~g~~~v 66 (229)
T PRK09270 32 RRTIVGIAGP-PGAGKSTLAEFLEALLQQDGELPAI 66 (229)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHhhhccCCceE
Confidence 3457888887 9999999999999999987766443
No 354
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.49 E-value=0.016 Score=45.75 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=23.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.++|+|+|. +|+||||+|..|+..+ |..+
T Consensus 3 ~~~i~i~G~-~G~GKst~a~~l~~~~---~~~~ 31 (197)
T PRK12339 3 STIHFIGGI-PGVGKTSISGYIARHR---AIDI 31 (197)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHhc---CCeE
Confidence 346777777 9999999999999875 5544
No 355
>PRK02496 adk adenylate kinase; Provisional
Probab=95.48 E-value=0.017 Score=44.79 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.|.|+|. +|+||||++..|+..+
T Consensus 2 ~~i~i~G~-pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGP-PGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 34888888 9999999999998877
No 356
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=95.48 E-value=0.022 Score=50.25 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=32.6
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..++|-||||+ ||||+|.-|+..|...|+||+++-
T Consensus 47 ~~~~~I~VtGTN---GKgSt~~~l~~iL~~~G~~vG~~t 82 (416)
T PRK10846 47 PAPFVFTVAGTN---GKGTTCRTLESILMAAGYRVGVYS 82 (416)
T ss_pred cCCCEEEEECCC---ChHHHHHHHHHHHHHcCCCceEEC
Confidence 346799999996 899999999999999999999984
No 357
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=95.47 E-value=0.9 Score=37.57 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La 28 (233)
.|++.|. +|+||||+...|.
T Consensus 2 ~V~liG~-pnvGKSTLln~L~ 21 (270)
T TIGR00436 2 FVAILGR-PNVGKSTLLNQLH 21 (270)
T ss_pred EEEEECC-CCCCHHHHHHHHh
Confidence 3678887 9999999988776
No 358
>PRK05748 replicative DNA helicase; Provisional
Probab=95.46 E-value=0.026 Score=50.36 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
.+.|++. +|+|||++++++|...+. .|++|++|-
T Consensus 205 livIaar-pg~GKT~~al~ia~~~a~~~g~~v~~fS 239 (448)
T PRK05748 205 LIIVAAR-PSVGKTAFALNIAQNVATKTDKNVAIFS 239 (448)
T ss_pred eEEEEeC-CCCCchHHHHHHHHHHHHhCCCeEEEEe
Confidence 4555555 999999999999999874 599999985
No 359
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.43 E-value=0.028 Score=40.41 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
.+.|.+. .|+|||+++..++..+... ..+++++-
T Consensus 2 ~~~i~~~-~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAP-TGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECC-CCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 3556666 9999999999999999874 56777765
No 360
>PLN02759 Formate--tetrahydrofolate ligase
Probab=95.41 E-value=0.017 Score=52.27 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=29.6
Q ss_pred ceeEEE---EeCCCCCcHHHHHHHHHHHHHH-cCCeeeEE
Q psy14904 6 FLHYFI---TGTNTNIGKTIISCALLSEFKK-RGISCIGM 41 (233)
Q Consensus 6 ~~~i~i---~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~ 41 (233)
.|.|.| +.+.-|.||||++.+|+.+|.+ .|+++.+.
T Consensus 69 gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~ 108 (637)
T PLN02759 69 GYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC 108 (637)
T ss_pred CcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE
Confidence 455555 4577899999999999999997 89988863
No 361
>PRK09165 replicative DNA helicase; Provisional
Probab=95.41 E-value=0.029 Score=50.69 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=28.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc---------------CCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR---------------GISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~---------------G~~Vl~~d 42 (233)
.+.|++. +|+|||++++++|...+++ |++|++|-
T Consensus 219 livIaar-pg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS 267 (497)
T PRK09165 219 LIILAGR-PSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS 267 (497)
T ss_pred eEEEEeC-CCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe
Confidence 4555555 9999999999999999864 78999985
No 362
>PRK13975 thymidylate kinase; Provisional
Probab=95.41 E-value=0.02 Score=44.85 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=23.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+.|+|.|. .|+||||++..|+..|.
T Consensus 2 ~~~I~ieG~-~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGI-DGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 358999999 99999999999999994
No 363
>PRK08840 replicative DNA helicase; Provisional
Probab=95.39 E-value=0.026 Score=50.54 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
+.|.+..+|+|||++++|+|...+. +|++|++|-
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~~~~~v~~fS 253 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFS 253 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4455555999999999999999984 699999985
No 364
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.39 E-value=0.037 Score=43.34 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=28.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 10 FITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 10 ~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.-+..|.||||.|+++|...+.+|++|+++.
T Consensus 25 v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 25 LIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 333344799999999999999999999999975
No 365
>PRK07429 phosphoribulokinase; Provisional
Probab=95.38 E-value=0.027 Score=48.11 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=28.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.-+|.|+|. .|+||||++..|+..|...+..|...|
T Consensus 8 ~~IIgI~G~-SGSGKSTla~~L~~ll~~~~~~vi~~D 43 (327)
T PRK07429 8 PVLLGVAGD-SGCGKTTFLRGLADLLGEELVTVICTD 43 (327)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHhHhccCceEEEEec
Confidence 347888888 999999999999999866554555444
No 366
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.36 E-value=0.021 Score=46.02 Aligned_cols=36 Identities=17% Similarity=-0.008 Sum_probs=29.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d 42 (233)
-.++.|+|. +|+|||+++..++...... +.+|++++
T Consensus 19 g~i~~i~G~-~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 19 GSITEIFGE-FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 356788888 9999999999999775544 37899988
No 367
>PLN02200 adenylate kinase family protein
Probab=95.36 E-value=0.023 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+|+|+|. +|+||||+|..|+..+
T Consensus 44 ~ii~I~G~-PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 44 FITFVLGG-PGSGKGTQCEKIVETF 67 (234)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46777887 9999999999998876
No 368
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.34 E-value=0.036 Score=40.83 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|. +|+|||+++..+|..+ ++++..+.
T Consensus 2 vlL~G~-~G~GKt~l~~~la~~~---~~~~~~i~ 31 (139)
T PF07728_consen 2 VLLVGP-PGTGKTTLARELAALL---GRPVIRIN 31 (139)
T ss_dssp EEEEES-SSSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHh---hcceEEEE
Confidence 677888 9999999999999999 77777664
No 369
>PRK13695 putative NTPase; Provisional
Probab=95.34 E-value=0.039 Score=42.46 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=26.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
.|+++|. +|+||||+...++..+...|.++.
T Consensus 2 ~i~ltG~-~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGP-PGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3788888 999999999999999888888764
No 370
>PLN00043 elongation factor 1-alpha; Provisional
Probab=95.34 E-value=0.17 Score=45.12 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=40.7
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcH-------HHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCI-------NNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~-------~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+++-+.+||+||.-. +. .+.........-+++|+++..+.+ .++......++..+++-+-+++||++
T Consensus 83 ~~~~i~liDtPGh~d--f~---~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD 156 (447)
T PLN00043 83 TKYYCTVIDAPGHRD--FI---KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156 (447)
T ss_pred CCEEEEEEECCCHHH--HH---HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEccc
Confidence 357899999997531 10 011111112224677887776543 35666666667788876667899998
No 371
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.33 E-value=0.025 Score=48.79 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH--HHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF--KKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l--~~~G~~Vl~~d 42 (233)
+++|.|. +|+|||.++..|+..+ ...+.++.++-
T Consensus 3 v~~I~G~-aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 3 VILITGG-AGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred EEEEEec-CCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 5566665 9999999999999999 77788887763
No 372
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.33 E-value=0.032 Score=49.67 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=32.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+++.|. .|+|||+++..++..+.++|.+|.++.
T Consensus 141 ~npl~L~G~-~G~GKTHLl~Ai~~~l~~~~~~v~yi~ 176 (445)
T PRK12422 141 FNPIYLFGP-EGSGKTHLMQAAVHALRESGGKILYVR 176 (445)
T ss_pred CceEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEee
Confidence 356889987 899999999999999999999999986
No 373
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.33 E-value=0.037 Score=46.36 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=27.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~ 41 (233)
.-+|.|+|. .|+||||++.-|...+.+. +.+|.++
T Consensus 62 p~IIGIaG~-~GSGKSTlar~L~~ll~~~~~~g~V~vi 98 (290)
T TIGR00554 62 PYIISIAGS-VAVGKSTTARILQALLSRWPEHRKVELI 98 (290)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHhhcCCCCceEEE
Confidence 357889998 9999999998888888753 3356554
No 374
>PRK06904 replicative DNA helicase; Validated
Probab=95.31 E-value=0.027 Score=50.56 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=28.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
+.|.+..+|+|||+++.++|...+. .|++|++|-
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS 257 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS 257 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4455555999999999999998875 599999985
No 375
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.31 E-value=0.032 Score=42.88 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=24.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.++|+|. +|+|||++...+...+.+++.-+..++
T Consensus 23 ~~~~~ll~G~-~G~GKT~ll~~~~~~~~~~~~~~~~~~ 59 (185)
T PF13191_consen 23 SPRNLLLTGE-SGSGKTSLLRALLDRLAERGGYVISIN 59 (185)
T ss_dssp ----EEE-B--TTSSHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4578888888 999999999999999998854455544
No 376
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.31 E-value=0.032 Score=45.32 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=26.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH------------cCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKK------------RGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~------------~G~~Vl~~d 42 (233)
-++++. +|+|||+++..+|.+.+. .+.+|+|+.
T Consensus 4 ~ll~g~-~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 4 SALVAP-GGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eEEEcC-CCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 345555 999999999999998873 456888886
No 377
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.30 E-value=0.029 Score=50.50 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
-.++.|+|. +|+||||+|..++..=+++ |.+++++-
T Consensus 21 g~~~Li~G~-pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 21 GRSTLVSGT-SGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 457788888 9999999999998876555 99999986
No 378
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.26 E-value=0.024 Score=43.70 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
|+++ +.|++.|. .|+||||++..|+..+
T Consensus 1 ~~~~--~~I~liG~-~GaGKStl~~~La~~l 28 (172)
T PRK05057 1 MAEK--RNIFLVGP-MGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCCC--CEEEEECC-CCcCHHHHHHHHHHHc
Confidence 4553 36899998 9999999999999876
No 379
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.42 Score=44.97 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=55.1
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
+|.+-+|||||... ++ .-..-+....+..++|.++..+--.++....+.+.+.+++.+ +++||++ .-......
T Consensus 75 ~~~iNlIDTPGHVD--Ft---~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmD-R~~a~~~~ 147 (697)
T COG0480 75 DYRINLIDTPGHVD--FT---IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMD-RLGADFYL 147 (697)
T ss_pred ceEEEEeCCCCccc--cH---HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECcc-ccccChhh
Confidence 68899999998863 11 111122222236777888877655567777888888888844 7799998 33333455
Q ss_pred hHHHHHhhcCCCc
Q psy14904 196 NYIELTKYLNVTP 208 (233)
Q Consensus 196 ~~~~l~~~~~~pv 208 (233)
..+.+.+.++.++
T Consensus 148 ~~~~l~~~l~~~~ 160 (697)
T COG0480 148 VVEQLKERLGANP 160 (697)
T ss_pred hHHHHHHHhCCCc
Confidence 6667777666533
No 380
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.23 E-value=0.021 Score=44.34 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 16 TNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 16 ggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-|+||||.+..|+.+|...|++|....
T Consensus 5 DGsGKtT~~~~L~~~l~~~~~~~~~~~ 31 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKEKGYKVIITF 31 (186)
T ss_dssp TTSSHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCcccccC
Confidence 599999999999999999999966655
No 381
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.22 E-value=0.02 Score=42.23 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
+|++.|. +|+||||++..|+..+.
T Consensus 1 lii~~G~-pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGP-PGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHST
T ss_pred CEEEECC-CCCCHHHHHHHHHHHCC
Confidence 4677777 99999999988876653
No 382
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.20 E-value=0.025 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.++|.++|. +|+||||++..|+..+
T Consensus 2 ~~~i~l~G~-~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGG-SSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhh
Confidence 357888888 9999999999998776
No 383
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.19 E-value=0.032 Score=51.97 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=30.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP 43 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp 43 (233)
...|.|+ +|+|||++...+...+.++|++|+++-|
T Consensus 175 ~~lI~Gp-PGTGKT~t~~~ii~~~~~~g~~VLv~a~ 209 (637)
T TIGR00376 175 LFLIHGP-PGTGKTRTLVELIRQLVKRGLRVLVTAP 209 (637)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4556666 9999999999999999999999999753
No 384
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.18 E-value=0.033 Score=50.46 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
-..+.|+|. +|+|||+++.+++..-+++ |.+|+++.
T Consensus 31 Gs~~li~G~-pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 31 GRPTLVSGT-AGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred CcEEEEEeC-CCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 356778887 9999999999999887777 99999986
No 385
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.17 E-value=0.021 Score=40.30 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
|.|.|. +|+|||+++..|+..+.+.
T Consensus 1 I~i~G~-~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGP-PGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 456777 7999999999999999865
No 386
>PRK06321 replicative DNA helicase; Provisional
Probab=95.16 E-value=0.034 Score=49.90 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
+.|.+..+|+|||++++++|...+. .|++|++|-
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fS 262 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFS 262 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4444445999999999999999884 699999985
No 387
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.15 E-value=0.02 Score=48.00 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=21.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++.|.++|. +|+||||+|..|+..+
T Consensus 2 ~~liil~G~-pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 2 MKIILTVGV-PGSGKSTWAREFAAKN 26 (300)
T ss_pred cEEEEEEcC-CCCCHHHHHHHHHHHC
Confidence 456777777 9999999999998877
No 388
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.14 E-value=0.038 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
-+|.|+|. +|+||||+|..||..|
T Consensus 93 ~iIlI~G~-sgsGKStlA~~La~~l 116 (301)
T PRK04220 93 IIILIGGA-SGVGTSTIAFELASRL 116 (301)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHh
Confidence 36777777 9999999999999888
No 389
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=95.13 E-value=0.032 Score=51.55 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=32.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~ 45 (233)
--+|.|+ +|+|||++...|+....++|..|.+|||-+
T Consensus 182 HtlV~Gt-TGsGKT~l~~~li~q~i~~g~~vi~fDpkg 218 (643)
T TIGR03754 182 HTLVLGT-TRVGKTRLAELLITQDIRRGDVVIVFDPKG 218 (643)
T ss_pred ceEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4577788 899999999999999999999999999754
No 390
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.10 E-value=0.02 Score=47.59 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=27.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|.|+|. .|+||||++..|+..+...|-.|...|
T Consensus 1 iigI~G~-sGsGKSTl~~~L~~ll~~~~~~vi~~D 34 (273)
T cd02026 1 IIGVAGD-SGCGKSTFLRRLTSLFGSDLVTVICLD 34 (273)
T ss_pred CEEEECC-CCCCHHHHHHHHHHhhCCCceEEEECc
Confidence 4788888 999999999999999976665555544
No 391
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.09 E-value=0.028 Score=43.52 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=24.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|.|||. .|+||||++.-|+. .|+.|.-.|
T Consensus 1 ii~itG~-~gsGKst~~~~l~~----~g~~~i~~D 30 (179)
T cd02022 1 IIGLTGG-IGSGKSTVAKLLKE----LGIPVIDAD 30 (179)
T ss_pred CEEEECC-CCCCHHHHHHHHHH----CCCCEEecC
Confidence 4789998 99999999988776 588776555
No 392
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.09 E-value=0.022 Score=42.50 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCeEEE--eccCcccCccCCCCchHHHHHHhCCCEEEEEc-CCCC-cHHHHHHHHHHHHhCCCcEEE
Q psy14904 104 SHIINCYNYLSNLTDVIIL--EGIGGFSVPFHDNENSADLAEKLGLPIILVID-LKIG-CINNALLSLEAINSRGLKLIG 179 (233)
Q Consensus 104 ~~l~~~~~~l~~~~D~vlI--D~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~-~~~~-~~~~~~~~~~~l~~~~~~i~G 179 (233)
.++..++-..+.+.|.|++ |+..... .-...++..+..|++=|+. .+.. +-.++..+.+.|+..|++-.
T Consensus 51 ~~~y~aLi~ta~dad~V~ll~dat~~~~------~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i- 123 (143)
T PF10662_consen 51 PRFYHALIVTAQDADVVLLLQDATEPRS------VFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI- 123 (143)
T ss_pred HHHHHHHHHHHhhCCEEEEEecCCCCCc------cCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-
Confidence 4455555556667886554 5432111 1122344445568887766 4433 24556777788888888744
Q ss_pred EEEcccC
Q psy14904 180 WVANHTQ 186 (233)
Q Consensus 180 iVlN~~~ 186 (233)
+.++-+.
T Consensus 124 f~vS~~~ 130 (143)
T PF10662_consen 124 FEVSAVT 130 (143)
T ss_pred EEEECCC
Confidence 5555554
No 393
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.08 E-value=0.15 Score=40.93 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|.|. +|+||||++.+|+ .++++++
T Consensus 13 ~~~liyG~-~G~GKtt~a~~~~-------~~~~~~~ 40 (220)
T TIGR01618 13 NMYLIYGK-PGTGKTSTIKYLP-------GKTLVLS 40 (220)
T ss_pred cEEEEECC-CCCCHHHHHHhcC-------CCCEEEe
Confidence 34666666 9999999988773 3566665
No 394
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.08 E-value=0.043 Score=43.28 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
.|.|+|+ +|+||||+...|+..+... +.++..+.
T Consensus 3 lilI~Gp-tGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGP-TGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 4677777 9999999999999988754 45666553
No 395
>PRK13764 ATPase; Provisional
Probab=95.06 E-value=0.037 Score=50.85 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.+.|.|+|. +|+||||+...|+..+..+|+.|..+
T Consensus 257 ~~~ILIsG~-TGSGKTTll~AL~~~i~~~~riV~Ti 291 (602)
T PRK13764 257 AEGILIAGA-PGAGKSTFAQALAEFYADMGKIVKTM 291 (602)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHhhCCCEEEEE
Confidence 346888888 99999999999999999999888665
No 396
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.06 E-value=0.039 Score=50.64 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
..+|.++|. +|+||||++..|+..|.. .|.++.++|
T Consensus 392 g~~Ivl~Gl-~GSGKSTia~~La~~L~~~~g~~~~~lD 428 (568)
T PRK05537 392 GFTVFFTGL-SGAGKSTIAKALMVKLMEMRGRPVTLLD 428 (568)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHhhhccCceEEEeC
Confidence 457888888 999999999999999987 788888887
No 397
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.4 Score=44.34 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=21.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
+++.+++.|+ ++|||||+--.|..+-.
T Consensus 2 ~~~~valvGN-PNvGKTtlFN~LTG~~q 28 (653)
T COG0370 2 KKLTVALVGN-PNVGKTTLFNALTGANQ 28 (653)
T ss_pred CcceEEEecC-CCccHHHHHHHHhccCc
Confidence 3456999999 99999999877765543
No 398
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.05 E-value=0.038 Score=45.53 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=27.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGIS 37 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~ 37 (233)
-+|+|+|. .|+||||+|..|...+++.+.+
T Consensus 83 fIIgiaGs-vavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 83 FIIGIAGS-VAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred EEEEeccC-ccccHHHHHHHHHHHHhhCCCC
Confidence 37899998 9999999999999999999876
No 399
>PRK00625 shikimate kinase; Provisional
Probab=95.04 E-value=0.027 Score=43.49 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.|+++|. +|+||||++..||..+
T Consensus 2 ~I~LiG~-pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGL-PTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4899999 9999999999998887
No 400
>PLN02165 adenylate isopentenyltransferase
Probab=95.00 E-value=0.026 Score=48.02 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.+.++|+|+|. +|+|||+++..||..+
T Consensus 40 ~~~g~iivIiGP-TGSGKStLA~~LA~~l 67 (334)
T PLN02165 40 NCKDKVVVIMGA-TGSGKSRLSVDLATRF 67 (334)
T ss_pred CCCCCEEEEECC-CCCcHHHHHHHHHHHc
Confidence 344568999999 9999999999998887
No 401
>KOG2004|consensus
Probab=94.94 E-value=0.018 Score=53.18 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=31.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
+.|+++++|+ +|||||+++..+|++|.++-.|..+
T Consensus 437 qGkIlCf~GP-PGVGKTSI~kSIA~ALnRkFfRfSv 471 (906)
T KOG2004|consen 437 QGKILCFVGP-PGVGKTSIAKSIARALNRKFFRFSV 471 (906)
T ss_pred CCcEEEEeCC-CCCCcccHHHHHHHHhCCceEEEec
Confidence 5689999999 9999999999999999988766655
No 402
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=94.92 E-value=0.017 Score=52.17 Aligned_cols=36 Identities=11% Similarity=-0.002 Sum_probs=29.6
Q ss_pred ceeEEEE---eCCCCCcHHHHHHHHHHHHH-HcCCeeeEE
Q psy14904 6 FLHYFIT---GTNTNIGKTIISCALLSEFK-KRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~---~~kggvGKTt~a~~La~~l~-~~G~~Vl~~ 41 (233)
.|.|.|| .+.-|.||||++.+|+.+|. +.|+++.+.
T Consensus 68 gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~~ 107 (625)
T PTZ00386 68 GKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFAC 107 (625)
T ss_pred CcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEEE
Confidence 4555554 57789999999999999999 789988863
No 403
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.91 E-value=0.039 Score=46.18 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=25.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGI 36 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~ 36 (233)
..+.+.|. +|+|||++|..+|..+.+.|+
T Consensus 59 ~~vll~G~-pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGN-PGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHHHHHcCC
Confidence 35788888 999999999999999998876
No 404
>COG3911 Predicted ATPase [General function prediction only]
Probab=94.91 E-value=0.034 Score=41.64 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
++|.+..+|.||||+- .+|+++|+-+.
T Consensus 11 ~fIltGgpGaGKTtLL----~aLa~~Gfatv 37 (183)
T COG3911 11 RFILTGGPGAGKTTLL----AALARAGFATV 37 (183)
T ss_pred EEEEeCCCCCcHHHHH----HHHHHcCceee
Confidence 5566666999999975 45677887664
No 405
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.89 E-value=0.072 Score=42.78 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=30.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
...++|.|. .|+|||.+...++..+.+. +.+|.+++
T Consensus 34 ~~~l~l~G~-~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 34 YNPLFLYGP-SGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SSEEEEEES-TTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHHHhccccccceeec
Confidence 457899888 9999999999999999874 88999987
No 406
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.86 E-value=0.031 Score=46.25 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=28.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|+|. .|+||||+...+...+...+.++..+.
T Consensus 81 GlilisG~-tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 81 GIILVTGP-TGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred CEEEEECC-CCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 35677777 999999999999888877777887774
No 407
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=94.86 E-value=0.71 Score=42.80 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSE 30 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~ 30 (233)
+++.|+|.|. .++||||++-.|...
T Consensus 2 ~iRNi~IIGh-~d~GKTTL~~rLl~~ 26 (595)
T TIGR01393 2 NIRNFSIIAH-IDHGKSTLADRLLEY 26 (595)
T ss_pred CeeEEEEECC-CCCCHHHHHHHHHHH
Confidence 4788999999 999999999887763
No 408
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=94.85 E-value=0.17 Score=40.45 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 9 YFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l 31 (233)
|+|.|. .|+||||++-+|....
T Consensus 2 v~i~Gh-~~~GKttL~~~ll~~~ 23 (219)
T cd01883 2 LVVIGH-VDAGKSTTTGHLLYLL 23 (219)
T ss_pred EEEecC-CCCChHHHHHHHHHHh
Confidence 678888 9999999999887664
No 409
>PRK05636 replicative DNA helicase; Provisional
Probab=94.84 E-value=0.046 Score=49.44 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=27.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
.+.|++. +|+|||++++++|...+ ++|++|++|-
T Consensus 267 Liiiaar-pg~GKT~~al~~a~~~a~~~g~~v~~fS 301 (505)
T PRK05636 267 MIIVAAR-PGVGKSTLALDFMRSASIKHNKASVIFS 301 (505)
T ss_pred eEEEEeC-CCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4455555 99999999999999887 4689999985
No 410
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.84 E-value=0.034 Score=43.81 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=22.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP 43 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp 43 (233)
+.++++|+ +|+||||++..+...+. +.....++|
T Consensus 16 ~~~i~aG~-~GsGKSt~~~~~~~~~~--~~~~v~i~~ 49 (199)
T PF06414_consen 16 TLIIIAGQ-PGSGKSTLARQLLEEFG--GGGIVVIDA 49 (199)
T ss_dssp EEEEEES--TTSTTHHHHHHHHHHT---TT-SEEE-G
T ss_pred EEEEEeCC-CCCCHHHHHHHhhhhcc--CCCeEEEeh
Confidence 45555566 99999999998888776 556667773
No 411
>PRK00023 cmk cytidylate kinase; Provisional
Probab=94.82 E-value=0.038 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+|+|+|+ .|+||||++..||..|
T Consensus 5 ~~i~i~g~-~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGP-AGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 47899998 9999999999999887
No 412
>PRK07004 replicative DNA helicase; Provisional
Probab=94.82 E-value=0.04 Score=49.28 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=27.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
+.|.+..+|+|||++++++|...+. .|++|++|-
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fS 249 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFS 249 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEe
Confidence 4444555999999999999998874 699999985
No 413
>PRK13946 shikimate kinase; Provisional
Probab=94.80 E-value=0.032 Score=43.43 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=24.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.+.|+++|. .|+||||++..||..| |++.
T Consensus 10 ~~~I~l~G~-~GsGKsti~~~LA~~L---g~~~ 38 (184)
T PRK13946 10 KRTVVLVGL-MGAGKSTVGRRLATML---GLPF 38 (184)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHc---CCCe
Confidence 457999998 9999999999999988 6553
No 414
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.80 E-value=0.027 Score=42.08 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 9 YFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l 31 (233)
|.++|. +|+||||++..|+..+
T Consensus 2 i~l~G~-~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGV-SGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcC-CCCCHHHHHHHHHhhc
Confidence 667777 9999999999998875
No 415
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.79 E-value=0.039 Score=45.74 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=28.4
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CC-eeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKR-GI-SCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~-~Vl~~d 42 (233)
...++|+|.|. ||+||||+|..++.....+ .+ .+..++
T Consensus 17 ~~~~~v~I~G~-~G~GKT~LA~~~~~~~~~~~~f~~v~wv~ 56 (287)
T PF00931_consen 17 NEVRVVAIVGM-GGIGKTTLARQVARDLRIKNRFDGVIWVS 56 (287)
T ss_dssp TSSEEEEEEES-TTSSHHHHHHHHHCHHHHCCCCTEEEEEE
T ss_pred CCeEEEEEEcC-CcCCcceeeeecccccccccccccccccc
Confidence 35689999999 9999999999999885533 22 344444
No 416
>PRK04182 cytidylate kinase; Provisional
Probab=94.79 E-value=0.03 Score=42.96 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+|+|+|. .|+||||++..||..|
T Consensus 2 ~I~i~G~-~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGP-PGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHc
Confidence 5888888 9999999999998876
No 417
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.77 E-value=0.037 Score=44.39 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
..+|+|+|+ .|+||||++..|+..|
T Consensus 2 ~~~i~i~G~-~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 2 AMIIAIDGP-SGAGKSTVAKAVAEKL 26 (217)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHh
Confidence 357999999 9999999999999877
No 418
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.77 E-value=0.046 Score=43.08 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=25.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|.|||. .|+||||++..|+..+ |..|.-.|
T Consensus 2 ~~i~itG~-~gsGKst~~~~l~~~~---g~~~i~~D 33 (195)
T PRK14730 2 RRIGLTGG-IASGKSTVGNYLAQQK---GIPILDAD 33 (195)
T ss_pred cEEEEECC-CCCCHHHHHHHHHHhh---CCeEeeCc
Confidence 46999999 9999999998777543 87775444
No 419
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.76 E-value=0.032 Score=43.00 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=23.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRG 35 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G 35 (233)
+.++|+|. +|+||||++-.|+..+...|
T Consensus 2 ~~~~i~G~-sGsGKttl~~~l~~~~~~~~ 29 (179)
T TIGR02322 2 RLIYVVGP-SGAGKDTLLDYARARLAGDP 29 (179)
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHcCcCC
Confidence 36788888 99999999999998875443
No 420
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.75 E-value=0.047 Score=44.99 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=24.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRG 35 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G 35 (233)
...+.+.|+ +|+||||+|..+|..+.+.|
T Consensus 42 ~~~vll~Gp-pGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGN-PGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcC-CCCCHHHHHHHHHHHHHhcC
Confidence 345778888 99999999999999997655
No 421
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=94.73 E-value=0.098 Score=40.54 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
+..+++|+ -++||||-....+..+..+|++|+++||.
T Consensus 2 ~l~~i~Gp-M~sGKS~eLi~~~~~~~~~~~~v~~~kp~ 38 (176)
T PF00265_consen 2 KLEFITGP-MFSGKSTELIRRIHRYEIAGKKVLVFKPA 38 (176)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred EEEEEECC-cCChhHHHHHHHHHHHHhCCCeEEEEEec
Confidence 56788888 99999999999999999999999999975
No 422
>KOG0991|consensus
Probab=94.72 E-value=0.032 Score=45.08 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=29.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
+|+.+.++|+ +|+||||....||+.|--..++=++.
T Consensus 47 nmP~liisGp-PG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 47 NMPNLIISGP-PGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred CCCceEeeCC-CCCchhhHHHHHHHHHhChhhhhHhh
Confidence 6788999999 99999999999999996443544443
No 423
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.042 Score=41.99 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++++.|+|- +||||||++-.+...+
T Consensus 4 ~kvvvitGV-pGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGV-PGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcC-CCCChHHHHHHHHHHH
Confidence 679999999 9999999997777666
No 424
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.037 Score=42.58 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
++.|++.|. .|+||||+...||..|.
T Consensus 2 ~~~IvLiG~-mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 2 NMNIVLIGF-MGAGKSTIGRALAKALN 27 (172)
T ss_pred CccEEEEcC-CCCCHhHHHHHHHHHcC
Confidence 456889999 99999999999999883
No 425
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=94.65 E-value=0.051 Score=42.98 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
|++|.|||. .|+||||++..|+. .|..|.-
T Consensus 1 m~~igitG~-igsGKst~~~~l~~----~g~~vid 30 (200)
T PRK14734 1 MLRIGLTGG-IGSGKSTVADLLSS----EGFLIVD 30 (200)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHH----CCCeEEe
Confidence 467999999 99999999988873 5876633
No 426
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.64 E-value=0.036 Score=41.36 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.|+++|. +|+||||++..|+..+
T Consensus 1 ~i~l~G~-~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGM-MGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcC-CCCCHHHHHHHHHHHh
Confidence 3788888 9999999999999888
No 427
>PRK13948 shikimate kinase; Provisional
Probab=94.64 E-value=0.043 Score=42.78 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
....|+++|. .|+||||++..||..|
T Consensus 9 ~~~~I~LiG~-~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGF-MGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHc
Confidence 3456889998 9999999999998887
No 428
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.63 E-value=0.056 Score=45.56 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=29.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
+.|.|+|. +|+||||+...|+..+.+. +.|+..+.
T Consensus 133 ~~ilI~G~-tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 133 KNILVVGG-TGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 46778888 9999999999999998775 67887775
No 429
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.039 Score=42.86 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSE 30 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~ 30 (233)
.|.|.|+ +|+||||.|..|+..
T Consensus 2 riiilG~-pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGP-PGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECC-CCCCHHHHHHHHHHH
Confidence 4788888 999999999999887
No 430
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.61 E-value=0.25 Score=46.96 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=37.9
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++-+.+|||||... +. ....-+....+-+++|+++..+--.++...++.+.+.+.+.+ +++||++
T Consensus 86 ~~~i~liDtPG~~d--f~---~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~i-v~iNK~D 150 (731)
T PRK07560 86 EYLINLIDTPGHVD--FG---GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV-LFINKVD 150 (731)
T ss_pred cEEEEEEcCCCccC--hH---HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeE-EEEECch
Confidence 57789999997632 11 112222222335777887765533344445555555667754 7899998
No 431
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.60 E-value=0.05 Score=44.03 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
.|+|.|. +|+||||+|..||..+ |..++-
T Consensus 8 rIvl~G~-PGsGK~T~a~~La~~~---g~~~is 36 (229)
T PTZ00088 8 KIVLFGA-PGVGKGTFAEILSKKE---NLKHIN 36 (229)
T ss_pred eEEEECC-CCCCHHHHHHHHHHHh---CCcEEE
Confidence 4888998 9999999999998876 555443
No 432
>KOG0744|consensus
Probab=94.60 E-value=0.034 Score=46.91 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
|.|.+.|+ +|+|||++|.+||+.|.-+
T Consensus 178 RliLlhGP-PGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 178 RLILLHGP-PGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eEEEEeCC-CCCChhHHHHHHHHhheee
Confidence 57888888 9999999999999999744
No 433
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.56 E-value=0.073 Score=46.77 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=31.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
...+++.|. .|+|||+++..++..+.++ |.+|.++.
T Consensus 136 ~n~l~l~G~-~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 136 YNPLFIYGG-VGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 346788887 9999999999999999887 78898886
No 434
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.55 E-value=0.034 Score=43.30 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
|+|+|. +|+||||+|..|+..+ |...+
T Consensus 2 I~i~G~-pGsGKst~a~~La~~~---~~~~i 28 (194)
T cd01428 2 ILLLGP-PGSGKGTQAERLAKKY---GLPHI 28 (194)
T ss_pred EEEECC-CCCCHHHHHHHHHHHc---CCeEE
Confidence 788888 9999999999998875 54443
No 435
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=94.54 E-value=0.075 Score=46.46 Aligned_cols=39 Identities=33% Similarity=0.391 Sum_probs=31.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~ 45 (233)
.+-+.|.|+ .|+|||++-.+|...+.++|.++.++||-+
T Consensus 15 ~~~~li~G~-~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg 53 (386)
T PF10412_consen 15 NRHILIIGA-TGSGKTQAIRHLLDQIRARGDRAIIYDPKG 53 (386)
T ss_dssp GG-EEEEE--TTSSHHHHHHHHHHHHHHTT-EEEEEEETT
T ss_pred hCcEEEECC-CCCCHHHHHHHHHHHHHHcCCEEEEEECCc
Confidence 457888998 999999999999999999999999999743
No 436
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.53 E-value=0.061 Score=50.14 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=32.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|.++|. +|+||||++..|+..|..+|..+.+++
T Consensus 459 ~~~~i~~~G~-~gsGKst~a~~l~~~l~~~~~~~~~l~ 495 (632)
T PRK05506 459 KPATVWFTGL-SGSGKSTIANLVERRLHALGRHTYLLD 495 (632)
T ss_pred CcEEEEecCC-CCchHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3567777777 999999999999999998898888886
No 437
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.48 E-value=0.042 Score=46.49 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=26.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++|+|+|+ +|+|||++|..||..+ +..+.-.|
T Consensus 4 ~~~i~i~Gp-tgsGKt~la~~la~~~---~~~iis~D 36 (307)
T PRK00091 4 PKVIVIVGP-TASGKTALAIELAKRL---NGEIISAD 36 (307)
T ss_pred ceEEEEECC-CCcCHHHHHHHHHHhC---CCcEEecc
Confidence 468899998 9999999999999876 44555555
No 438
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.45 E-value=0.081 Score=47.21 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
...+++.|. +|+|||+++..++..+.++ +.+|.++.
T Consensus 148 ~~~l~l~G~-~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 148 YNPLFIYGG-VGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 356888888 9999999999999999887 78898886
No 439
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.44 E-value=0.03 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 9 YFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l 31 (233)
|.+.|. +|+||||++..|+..+
T Consensus 1 i~l~G~-~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGV-AGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECC-CCCCHHHHHHHHHHhc
Confidence 456677 9999999999999887
No 440
>CHL00181 cbbX CbbX; Provisional
Probab=94.43 E-value=0.055 Score=45.32 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGI 36 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~ 36 (233)
.+.+.|. +|+||||+|..+|..+...|+
T Consensus 61 ~ill~G~-pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 61 HMSFTGS-PGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHHHcCC
Confidence 4677777 999999999999999987765
No 441
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.43 E-value=0.069 Score=48.44 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=31.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++.|.+. +|+|||+++..++...+++|.+|+++.
T Consensus 274 ~~~li~G~-~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 274 SIILVSGA-TGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred cEEEEEcC-CCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46777775 999999999999999999999999996
No 442
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.42 E-value=0.042 Score=41.77 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
+|.|+|. .|+||||++..|+..| |+.+
T Consensus 2 iI~i~G~-~GSGKstia~~la~~l---g~~~ 28 (171)
T TIGR02173 2 IITISGP-PGSGKTTVAKILAEKL---SLKL 28 (171)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHc---CCce
Confidence 5788888 9999999999998876 5553
No 443
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.39 E-value=0.21 Score=39.86 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=30.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+++.=..-|+|||.+|..++.-+-..|++|.++-
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvs 63 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVS 63 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEE
Confidence 45555555999999999999999999999999986
No 444
>PLN02348 phosphoribulokinase
Probab=94.35 E-value=0.088 Score=45.83 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
.-+|.|+|. +|+||||++..|+..|...
T Consensus 49 p~IIGIaG~-SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 49 TVVIGLAAD-SGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHhhc
Confidence 347889998 9999999999999999765
No 445
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=94.33 E-value=0.07 Score=43.20 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
|.|+| +.||||+...|+..|..+|++|++-
T Consensus 2 i~~vG---~gGKTtl~~~l~~~~~~~g~~v~~T 31 (232)
T TIGR03172 2 IAFVG---AGGKTSTMFWLAAEYRKEGYRVLVT 31 (232)
T ss_pred EEEEc---CCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 55665 4899999999999999999999984
No 446
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.32 E-value=0.057 Score=39.84 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
-.+|++.|. -|+||||++..++..|.
T Consensus 22 ~~~i~l~G~-lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGD-LGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHcC
Confidence 357888888 99999999999999984
No 447
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.32 E-value=0.061 Score=46.30 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=24.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
-+++.++|+ +|+||||++..|+..|.+
T Consensus 78 r~il~L~GP-PGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGP-VGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHhh
Confidence 467899999 999999999999999987
No 448
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.31 E-value=0.072 Score=44.02 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=30.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...+.|+|. +|+||||+...|+..+...+.++..+.
T Consensus 127 ~~~ili~G~-tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 127 RGNILISGP-TGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp TEEEEEEES-TTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred ceEEEEECC-CccccchHHHHHhhhccccccceEEec
Confidence 356778877 999999999999998888878888875
No 449
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=94.26 E-value=0.076 Score=49.41 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=33.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~ 45 (233)
.-.+|.|+ +|+|||++...|+..+.++|..|.++||-+
T Consensus 177 ~H~lv~G~-TGsGKT~l~~~l~~q~i~~g~~viv~DpKg 214 (634)
T TIGR03743 177 GHTLVLGT-TGVGKTRLAELLITQDIRRGDVVIVIDPKG 214 (634)
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45778888 899999999999999999999999999764
No 450
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.052 Score=43.03 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=25.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
..+|+|.|+ =|+||||+|..||..|. -++.+
T Consensus 4 ~~~IvI~G~-IG~GKSTLa~~La~~l~---~~~~~ 34 (216)
T COG1428 4 AMVIVIEGM-IGAGKSTLAQALAEHLG---FKVFY 34 (216)
T ss_pred ccEEEEecc-cccCHHHHHHHHHHHhC---Cceee
Confidence 458999999 99999999999998884 45544
No 451
>KOG3062|consensus
Probab=94.23 E-value=0.084 Score=42.32 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=30.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC--eeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI--SCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~--~Vl~~d 42 (233)
|+-+.|+|. +-+||||.|..|..+|+.+|. .|.++|
T Consensus 1 MpLVvi~G~-P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGL-PCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCC-CCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 566788888 999999999999999999994 577776
No 452
>PRK13976 thymidylate kinase; Provisional
Probab=94.20 E-value=0.098 Score=41.72 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=28.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR-G-ISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G-~~Vl~~d 42 (233)
-|+|=|. -|+||||.+..|+..|..+ | ++|.+..
T Consensus 2 fIv~EGi-DGsGKsTq~~~L~~~L~~~~g~~~v~~~~ 37 (209)
T PRK13976 2 FITFEGI-DGSGKTTQSRLLAEYLSDIYGENNVVLTR 37 (209)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHhcCCcceEEee
Confidence 4677777 8999999999999999987 6 5887764
No 453
>PRK14532 adenylate kinase; Provisional
Probab=94.19 E-value=0.045 Score=42.59 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 9 YFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l 31 (233)
|++.|. +|+||||++..||..+
T Consensus 3 i~~~G~-pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGP-PAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECC-CCCCHHHHHHHHHHHc
Confidence 778888 9999999999998755
No 454
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=94.17 E-value=0.077 Score=50.80 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=32.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
.++|+|+ +|+|||++...|+..+...|.+|.++||-
T Consensus 432 n~~I~G~-tGsGKS~~~~~l~~~~~~~g~~v~iiD~~ 467 (797)
T TIGR02746 432 NIAVVGG-SGAGKSFFMQELIVDNLSRGGKVWVIDVG 467 (797)
T ss_pred ceEEEcC-CCCCHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5788888 99999999999999998899999999974
No 455
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.16 E-value=0.12 Score=40.07 Aligned_cols=34 Identities=9% Similarity=-0.061 Sum_probs=28.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+...-+..|-||||.|.++|..-+-+|+||+++.
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQ 56 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQ 56 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEE
Confidence 3334445699999999999999999999999975
No 456
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.024 Score=49.54 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=29.3
Q ss_pred ceeEEEE---eCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFIT---GTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~---~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
.|-|.|| .+--|.||||++.+|+.+|.+.|+++.+
T Consensus 52 gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~ 89 (554)
T COG2759 52 GKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAII 89 (554)
T ss_pred ceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheE
Confidence 4555555 4667999999999999999999998876
No 457
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.13 E-value=0.094 Score=46.70 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=31.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
.+.+++.|. +|+|||+++..++..+.++ +.+|.++.
T Consensus 130 ~n~l~lyG~-~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 130 YNPLFIYGG-VGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCeEEEEcC-CCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 346889998 9999999999999999876 67899986
No 458
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.07 E-value=0.067 Score=42.48 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
+.+.|.|+|. +|+||||++..|. +.+.++.+.
T Consensus 12 ~~~~ivi~Gp-sG~GK~tl~~~L~----~~~~~~~~~ 43 (206)
T PRK14738 12 KPLLVVISGP-SGVGKDAVLARMR----ERKLPFHFV 43 (206)
T ss_pred CCeEEEEECc-CCCCHHHHHHHHH----hcCCccccc
Confidence 4567888888 9999999886664 445555443
No 459
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=94.07 E-value=0.079 Score=41.84 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH----cCCeeeEEeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK----RGISCIGMKPI 44 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~----~G~~Vl~~dp~ 44 (233)
.+.|.|. +|+|||++..+++..++. ...++.++||-
T Consensus 40 h~li~G~-tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGA-TGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE---TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcC-CCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 5788888 899999999999999998 56788888854
No 460
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.05 E-value=0.099 Score=41.52 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=26.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC--eeeEEeeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGI--SCIGMKPIA 45 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~--~Vl~~dp~~ 45 (233)
+.+++.|+ .|+|||++|+..|..+-..|. |+.+.+|..
T Consensus 20 ~~v~~~G~-AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 20 DLVIVNGP-AGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp SEEEEE---TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CeEEEECC-CCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 44555555 999999999999987776654 888888654
No 461
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=94.04 E-value=0.088 Score=49.20 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=36.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~ 45 (233)
..+-++|+|+ .|+|||++-.+|.....++|.|..++||-+
T Consensus 184 E~~H~li~Gt-tGSGKS~~i~~LL~~ir~RGdrAIIyD~~G 223 (732)
T PRK13700 184 EIQNFCLHGT-VGAGKSEVIRRLANYARQRGDMVVIYDRSG 223 (732)
T ss_pred hhcceEEeCC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4567899999 999999999999999999999999999754
No 462
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=93.99 E-value=0.11 Score=41.33 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=24.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...|.|||. .|+||||++.-|.. .|..|.-.|
T Consensus 5 ~~~igitG~-igsGKSt~~~~l~~----~g~~v~d~D 36 (208)
T PRK14731 5 PFLVGVTGG-IGSGKSTVCRFLAE----MGCELFEAD 36 (208)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHH----CCCeEEecc
Confidence 356899998 99999999876654 588875554
No 463
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=93.98 E-value=0.41 Score=42.38 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=24.3
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
|-+++.-.|+|.|. .++||||+.-.|....
T Consensus 1 ~~~k~~~~v~iiGh-~d~GKSTL~~~Ll~~~ 30 (425)
T PRK12317 1 AKEKPHLNLAVIGH-VDHGKSTLVGRLLYET 30 (425)
T ss_pred CCCCCEEEEEEECC-CCCChHHHHHHHHHHc
Confidence 45666667899998 9999999998887654
No 464
>PLN02422 dephospho-CoA kinase
Probab=93.98 E-value=0.082 Score=42.83 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=25.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+.|.|||. .|+||||++.-|+ +.|..|.-.|
T Consensus 1 M~~igltG~-igsGKstv~~~l~----~~g~~~idaD 32 (232)
T PLN02422 1 MRVVGLTGG-IASGKSTVSNLFK----SSGIPVVDAD 32 (232)
T ss_pred CeEEEEECC-CCCCHHHHHHHHH----HCCCeEEehh
Confidence 357999998 9999999997776 4688774433
No 465
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.91 E-value=0.066 Score=42.71 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.|.|.|. +|+||||+|..||..+
T Consensus 2 ~I~v~G~-pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGP-PGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 3788888 9999999999888776
No 466
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=93.91 E-value=0.14 Score=41.21 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|+++|- |+.|||++|..|+++|.-.|+++-+|.
T Consensus 14 ~ivmVGL-PArGKs~ia~kl~ryL~w~g~~~~vFn 47 (222)
T PF01591_consen 14 VIVMVGL-PARGKSYIARKLCRYLNWLGVKTKVFN 47 (222)
T ss_dssp EEEEESS-TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHhhcCCCcceee
Confidence 6777787 999999999999999999999999986
No 467
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.90 E-value=0.062 Score=47.17 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++.|+|+|. .|+||||++..|+..+
T Consensus 219 ~~~IvI~G~-~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 219 VRTVAILGG-ESSGKSTLVNKLANIF 243 (399)
T ss_pred CcEEEEEcC-CCCCHHHHHHHHHHHh
Confidence 578999999 9999999999988765
No 468
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=93.87 E-value=0.085 Score=46.23 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=31.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.||||+ ||||+|.-|+..|.+.|+||+++-
T Consensus 17 ~~~vI~VtGTN---GKgSt~~~l~~iL~~~g~~vg~~t 51 (397)
T TIGR01499 17 LYPVIHVAGTN---GKGSTCAFLESILRAAGYKVGLFT 51 (397)
T ss_pred hCCEEEEeCCC---ChHHHHHHHHHHHHHcCCCeeEEe
Confidence 46899999994 799999999999999999999975
No 469
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=0.74 Score=38.61 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=34.8
Q ss_pred CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 117 TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 117 ~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
--|--||||+.-.. +.+. ..=|+.-| ..|+|+.+..+..-++...+-..++.|++-+-+.+||++
T Consensus 75 rhyahVDcPGHaDY-vKNM---ItgAaqmD-gAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~D 139 (394)
T COG0050 75 RHYAHVDCPGHADY-VKNM---ITGAAQMD-GAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVD 139 (394)
T ss_pred ceEEeccCCChHHH-HHHH---hhhHHhcC-ccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccc
Confidence 34677899876321 1111 11122223 345555555443333333333346679988888999998
No 470
>PRK10536 hypothetical protein; Provisional
Probab=93.84 E-value=0.11 Score=42.73 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=26.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHH-HHHcCC-eeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSE-FKKRGI-SCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~-l~~~G~-~Vl~~dp~ 44 (233)
..++++|. .|+|||++|..++.. +....+ ++.+.+|.
T Consensus 75 ~lV~i~G~-aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 75 QLIFATGE-AGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 46677777 999999999999995 433334 45556654
No 471
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=93.82 E-value=0.095 Score=46.91 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=30.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+++|.|||+ .|||||+.-|+..|...|++|.++.
T Consensus 84 ~~~vI~ITGT---nGKTTT~~ml~~iL~~~g~~~~~~~ 118 (464)
T TIGR01085 84 KLKVIGVTGT---NGKTTTTSLIAQLLRLLGKKTGLIG 118 (464)
T ss_pred ccEEEEEECC---CCcHhHHHHHHHHHHHcCCCEEEEC
Confidence 4688999987 7999999999999999999987754
No 472
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=93.82 E-value=0.12 Score=40.95 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=24.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+|.+||. .|+||||++..|+..+ |..|.-.|
T Consensus 7 ~~IglTG~-iGsGKStv~~~l~~~l---g~~vidaD 38 (204)
T PRK14733 7 YPIGITGG-IASGKSTATRILKEKL---NLNVVCAD 38 (204)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHc---CCeEEecc
Confidence 46999999 9999999997776533 88765544
No 473
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=93.81 E-value=0.05 Score=44.31 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=23.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
+.|.+.|.-+||||||+|.-||..| |.+.++
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rL---gI~~vi 119 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRL---GIRSVI 119 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHc---CCceee
Confidence 3555666669999999999999877 665444
No 474
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=93.80 E-value=0.11 Score=43.56 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
..+++.|.|+|. +|+||||++..|. ..|+-+
T Consensus 3 ~~~~~~i~i~G~-~GsGKtt~~~~l~----~~g~~~ 33 (288)
T PRK05416 3 AAPMRLVIVTGL-SGAGKSVALRALE----DLGYYC 33 (288)
T ss_pred CCCceEEEEECC-CCCcHHHHHHHHH----HcCCeE
Confidence 446778888888 9999999998884 456533
No 475
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.79 E-value=0.061 Score=42.76 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 9 YFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l 31 (233)
|+|.|. +|+||||+|..||..+
T Consensus 2 I~i~G~-pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGP-PGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECC-CCCCHHHHHHHHHHHc
Confidence 778888 9999999999998765
No 476
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.75 E-value=0.11 Score=42.86 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=25.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.+.|. +|+|||+++..||..+ |.++..+.
T Consensus 22 ~~vLL~G~-~GtGKT~lA~~la~~l---g~~~~~i~ 53 (262)
T TIGR02640 22 YPVHLRGP-AGTGKTTLAMHVARKR---DRPVMLIN 53 (262)
T ss_pred CeEEEEcC-CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 35778888 9999999999999754 77777764
No 477
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.73 E-value=0.1 Score=50.10 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=34.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
.+.++|..+ +|+||||.-+-.+.++|.+|+|+.++=|.
T Consensus 97 g~SFaiiAP-TGvGKTTfg~~~sl~~a~kgkr~yii~PT 134 (1187)
T COG1110 97 GKSFAIIAP-TGVGKTTFGLLMSLYLAKKGKRVYIIVPT 134 (1187)
T ss_pred CCceEEEcC-CCCchhHHHHHHHHHHHhcCCeEEEEecC
Confidence 467888888 89999999999999999999999998764
No 478
>KOG0462|consensus
Probab=93.72 E-value=0.41 Score=43.27 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=53.6
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
.|-+=+|||||... +.. -.....+.+ ..+|+|+++.-|-..++.......-+.++.++ .|+||++-| ....+.
T Consensus 124 ~ylLNLIDTPGHvD--Fs~--EVsRslaac-~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iI-pVlNKIDlp-~adpe~ 196 (650)
T KOG0462|consen 124 SYLLNLIDTPGHVD--FSG--EVSRSLAAC-DGALLVVDASQGVQAQTVANFYLAFEAGLAII-PVLNKIDLP-SADPER 196 (650)
T ss_pred ceEEEeecCCCccc--ccc--eehehhhhc-CceEEEEEcCcCchHHHHHHHHHHHHcCCeEE-EeeeccCCC-CCCHHH
Confidence 37778999998863 211 112222223 36899999988777777666666667788855 679999833 233345
Q ss_pred hHHHHHhhcCCC
Q psy14904 196 NYIELTKYLNVT 207 (233)
Q Consensus 196 ~~~~l~~~~~~p 207 (233)
....+++.|++|
T Consensus 197 V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 197 VENQLFELFDIP 208 (650)
T ss_pred HHHHHHHHhcCC
Confidence 555666665543
No 479
>PRK08356 hypothetical protein; Provisional
Probab=93.68 E-value=0.087 Score=41.35 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
...|.|+|. +|+||||+|-.|. +.|..++.
T Consensus 5 ~~~i~~~G~-~gsGK~t~a~~l~----~~g~~~is 34 (195)
T PRK08356 5 KMIVGVVGK-IAAGKTTVAKFFE----EKGFCRVS 34 (195)
T ss_pred cEEEEEECC-CCCCHHHHHHHHH----HCCCcEEe
Confidence 446888887 9999999998884 35766543
No 480
>PLN02674 adenylate kinase
Probab=93.67 E-value=0.084 Score=43.12 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|+|.|. +|+||||.|..||..+
T Consensus 31 ~~~i~l~G~-PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGP-PGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHc
Confidence 356888888 9999999999888766
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.64 E-value=0.082 Score=45.46 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
...|.|+|. +|+||||+...|...+.+. +.++..+.
T Consensus 122 ~g~ili~G~-tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 122 RGLILVTGP-TGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 456788888 9999999999999888753 55676653
No 482
>PRK12740 elongation factor G; Reviewed
Probab=93.62 E-value=0.44 Score=44.79 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=55.6
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN 194 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~ 194 (233)
.++++.+|||||... +.. ......... .-+++|.++..+-..+....++.++..+.+++ +|+||++ .......
T Consensus 58 ~~~~i~liDtPG~~~--~~~--~~~~~l~~a-D~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D-~~~~~~~ 130 (668)
T PRK12740 58 KGHKINLIDTPGHVD--FTG--EVERALRVL-DGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMD-RAGADFF 130 (668)
T ss_pred CCEEEEEEECCCcHH--HHH--HHHHHHHHh-CeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCC-CCCCCHH
Confidence 368999999987631 100 111122222 35777777765433334445555666777855 6899998 3333345
Q ss_pred hhHHHHHhhcCCCce-EecCC
Q psy14904 195 ENYIELTKYLNVTPL-GRIPY 214 (233)
Q Consensus 195 ~~~~~l~~~~~~pvl-g~IP~ 214 (233)
...+.+++.++.+++ -.+|.
T Consensus 131 ~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 131 RVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHHHHHHCCCceeEEecc
Confidence 677788887887665 34664
No 483
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=93.58 E-value=0.86 Score=40.23 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
...-...++.+++.+.+++ +|+|+.+ |.........+.+++.+++|++
T Consensus 166 ~~aEe~~i~eLk~~~kPfi-ivlN~~d-p~~~et~~l~~~l~eky~vpvl 213 (492)
T TIGR02836 166 VEAEERVIEELKELNKPFI-ILLNSTH-PYHPETEALRQELEEKYDVPVL 213 (492)
T ss_pred hHHHHHHHHHHHhcCCCEE-EEEECcC-CCCchhHHHHHHHHHHhCCceE
Confidence 3334567888888999966 6799998 6543444455677777888876
No 484
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.54 E-value=0.12 Score=46.34 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=29.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
++++|+|||+ .|||||+.-|++.|...|+++...
T Consensus 121 ~~~~I~VTGT---nGKTTTt~mi~~iL~~~g~~~~~~ 154 (480)
T PRK01438 121 PAPWLAVTGT---NGKTTTVQMLASMLRAAGLRAAAV 154 (480)
T ss_pred CCCEEEEeCC---CcHHHHHHHHHHHHHHcCCCeEEE
Confidence 4578999988 799999999999999999887654
No 485
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=93.49 E-value=0.13 Score=48.89 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=31.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
++..|+|. +|+||||+...+...+.+.|++|.++=|.
T Consensus 369 ~~~il~G~-aGTGKTtll~~i~~~~~~~g~~V~~~ApT 405 (744)
T TIGR02768 369 DIAVVVGR-AGTGKSTMLKAAREAWEAAGYRVIGAALS 405 (744)
T ss_pred CEEEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 45666666 99999999999999999999999987543
No 486
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=93.47 E-value=0.1 Score=46.64 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=30.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.+++|.|||+ .|||||+.-|+..|.+.|+++..+
T Consensus 94 ~~~vI~ITGT---nGKTTT~~~l~~iL~~~g~~~~~~ 127 (460)
T PRK00139 94 KLKLIGVTGT---NGKTTTAYLLAQILRLLGEKTALI 127 (460)
T ss_pred ccEEEEEECC---CCchhHHHHHHHHHHHcCCCEEEE
Confidence 4678999987 799999999999999999998875
No 487
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=93.47 E-value=0.1 Score=50.25 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=32.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
..+|.|+ +|+|||+++..|+..+.+.|.+|.++||-
T Consensus 451 N~~I~G~-sGsGKS~l~k~l~~~~~~~g~~viiiD~~ 486 (844)
T PRK13721 451 NMAVCGT-SGAGKTGLIQPLIRSVLDSGGFAVVFDMG 486 (844)
T ss_pred cEEEEcC-CCCCHHHHHHHHHHhhhccCCEEEEEeCC
Confidence 5888888 99999999999999988889999999964
No 488
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=93.46 E-value=0.13 Score=45.30 Aligned_cols=38 Identities=37% Similarity=0.445 Sum_probs=33.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~ 45 (233)
+.++|.+. +|+|||++-.+|...+.++|.++.++||-+
T Consensus 43 ~h~~i~g~-tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg 80 (410)
T cd01127 43 AHTMIIGT-TGTGKTTQIRELLASIRARGDRAIIYDPNG 80 (410)
T ss_pred ccEEEEcC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 46788888 899999998888888888999999999865
No 489
>PRK07773 replicative DNA helicase; Validated
Probab=93.46 E-value=0.13 Score=49.93 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=28.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
.+.|++. +|+|||+++.++|...+.+ |++|++|-
T Consensus 219 livIagr-Pg~GKT~fal~ia~~~a~~~~~~V~~fS 253 (886)
T PRK07773 219 LIIVAAR-PSMGKTTFGLDFARNCAIRHRLAVAIFS 253 (886)
T ss_pred EEEEEeC-CCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4555555 9999999999999999865 88999985
No 490
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.41 E-value=0.082 Score=44.97 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=26.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
+.|.+.|. +|+||||++..||..|.....+|-+
T Consensus 65 ~~ilL~G~-pGtGKTtla~~lA~~l~~~~~rV~~ 97 (327)
T TIGR01650 65 RRVMVQGY-HGTGKSTHIEQIAARLNWPCVRVNL 97 (327)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHHCCCeEEEEe
Confidence 46899999 9999999999999999655444443
No 491
>PLN02748 tRNA dimethylallyltransferase
Probab=93.39 E-value=0.086 Score=47.11 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+-++|+|+|+ +|+|||+++..||..+
T Consensus 21 ~~~~i~i~Gp-tgsGKs~la~~la~~~ 46 (468)
T PLN02748 21 KAKVVVVMGP-TGSGKSKLAVDLASHF 46 (468)
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHhc
Confidence 3568999998 9999999999999887
No 492
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.39 E-value=0.13 Score=45.93 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=28.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
+.++|+|||+ .|||||+.-|++.|...|+++..
T Consensus 113 ~~~vI~VTGT---~GKTTTt~ll~~iL~~~g~~~~~ 145 (460)
T PRK01390 113 DAPFIAITGT---NGKSTTTALIAHILREAGRDVQM 145 (460)
T ss_pred CCCEEEEeCC---CcHHHHHHHHHHHHHhcCCCeEE
Confidence 4578999987 79999999999999999988755
No 493
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=93.38 E-value=0.11 Score=49.56 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=32.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~dp~ 44 (233)
...+|+|+ +|+|||+++..|+..+.+.|. +|.++||.
T Consensus 435 ~n~~I~G~-tGsGKS~~~~~l~~~~~~~~~~~v~iiD~~ 472 (785)
T TIGR00929 435 GHTLIFGP-TGSGKTTLLNFLLAQMQKYGGMTIFAFDKD 472 (785)
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHhhccCCCeEEEEeCC
Confidence 45788888 999999999999988888877 99999975
No 494
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=93.36 E-value=0.085 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+|+|.|+ +|+||||++..||..|
T Consensus 2 ~~i~I~G~-~GsGKST~ak~la~~l 25 (712)
T PRK09518 2 IIVAIDGP-AGVGKSSVSRALAQYL 25 (712)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 37999999 9999999999999997
No 495
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.35 E-value=0.083 Score=43.41 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
..+.|+|. +|+||||++..++..+...
T Consensus 44 ~~~~l~G~-~G~GKTtl~~~l~~~l~~~ 70 (269)
T TIGR03015 44 GFILITGE-VGAGKTTLIRNLLKRLDQE 70 (269)
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHhcCCC
Confidence 36777777 9999999999998887643
No 496
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.065 Score=49.66 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=30.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
.++++++|+ +|||||+++..+|.++.++-.|+.+
T Consensus 350 GpILcLVGP-PGVGKTSLgkSIA~al~RkfvR~sL 383 (782)
T COG0466 350 GPILCLVGP-PGVGKTSLGKSIAKALGRKFVRISL 383 (782)
T ss_pred CcEEEEECC-CCCCchhHHHHHHHHhCCCEEEEec
Confidence 468999999 9999999999999999888777765
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.31 E-value=0.074 Score=41.42 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
...++|.|+ .|+||||+...|+..+
T Consensus 2 g~~i~l~G~-sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGP-SGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECC-CCCCHHHHHHHHhccC
Confidence 346888888 9999999998886654
No 498
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=93.28 E-value=0.13 Score=49.42 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=32.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP 43 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp 43 (233)
...+|.|+ +|+|||++...|+..+.+.|.+|.++|+
T Consensus 439 ~N~~I~G~-sGsGKS~l~~~l~~~~~~~g~~vviiD~ 474 (829)
T TIGR03783 439 RNKFILGP-SGSGKSFFTNHLVRQYYEQGTHILLVDT 474 (829)
T ss_pred CceEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEECC
Confidence 35688888 9999999999999999999999999996
No 499
>PLN02840 tRNA dimethylallyltransferase
Probab=93.24 E-value=0.094 Score=46.13 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
+.++|+|+|+ +|+||||++..||..+.
T Consensus 20 ~~~vi~I~Gp-tgsGKTtla~~La~~~~ 46 (421)
T PLN02840 20 KEKVIVISGP-TGAGKSRLALELAKRLN 46 (421)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHCC
Confidence 3457889888 99999999999998883
No 500
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.24 E-value=0.14 Score=48.37 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=30.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcC--CeeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRG--ISCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G--~~Vl~~dp~ 44 (233)
++..|+|. +|+||||+...+...+.+.| ++|.++=|.
T Consensus 339 ~~~iitGg-pGTGKTt~l~~i~~~~~~~~~~~~v~l~ApT 377 (720)
T TIGR01448 339 KVVILTGG-PGTGKTTITRAIIELAEELGGLLPVGLAAPT 377 (720)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHHcCCCceEEEEeCc
Confidence 45666666 99999999999999999888 788877654
Done!