Query psy14904
Match_columns 233
No_of_seqs 154 out of 1252
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:48:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3of5_A Dethiobiotin synthetase 100.0 6.3E-39 2.2E-43 258.1 22.2 214 5-229 3-217 (228)
2 1byi_A Dethiobiotin synthase; 100.0 3.4E-37 1.2E-41 247.1 25.0 220 7-230 2-222 (224)
3 3fgn_A Dethiobiotin synthetase 100.0 1.1E-35 3.6E-40 241.8 24.0 204 2-219 22-228 (251)
4 3qxc_A Dethiobiotin synthetase 100.0 2.8E-34 9.5E-39 232.3 19.8 205 3-216 18-232 (242)
5 4a0g_A Adenosylmethionine-8-am 99.9 5.9E-27 2E-31 218.8 20.0 203 5-218 33-300 (831)
6 2ph1_A Nucleotide-binding prot 99.9 1E-23 3.4E-28 172.9 20.0 196 3-219 15-233 (262)
7 1g3q_A MIND ATPase, cell divis 99.9 1.5E-23 5.1E-28 168.9 19.1 198 5-219 1-204 (237)
8 3q9l_A Septum site-determining 99.9 2.9E-24 9.9E-29 175.3 14.6 196 5-219 1-218 (260)
9 4dzz_A Plasmid partitioning pr 99.9 2.5E-23 8.5E-28 163.9 18.3 167 6-219 1-173 (206)
10 1hyq_A MIND, cell division inh 99.9 7.2E-23 2.5E-27 167.5 20.9 198 5-219 1-203 (263)
11 3ea0_A ATPase, para family; al 99.9 2.9E-23 9.8E-28 167.9 17.4 192 4-216 2-209 (245)
12 1wcv_1 SOJ, segregation protei 99.9 1.1E-23 3.8E-28 172.1 13.9 200 1-219 1-213 (257)
13 3k9g_A PF-32 protein; ssgcid, 99.9 7E-23 2.4E-27 168.0 16.4 203 1-220 22-238 (267)
14 3bfv_A CAPA1, CAPB2, membrane 99.9 1.3E-21 4.6E-26 161.0 19.5 167 3-186 79-255 (271)
15 3la6_A Tyrosine-protein kinase 99.9 8.5E-22 2.9E-26 163.3 18.1 171 1-186 87-265 (286)
16 3cio_A ETK, tyrosine-protein k 99.9 1.2E-21 4.2E-26 163.4 17.5 168 2-186 100-277 (299)
17 2oze_A ORF delta'; para, walke 99.9 1.1E-21 3.7E-26 163.4 16.3 205 5-219 33-258 (298)
18 3end_A Light-independent proto 99.9 2.6E-21 8.9E-26 161.9 15.9 195 3-219 38-251 (307)
19 2afh_E Nitrogenase iron protei 99.9 2E-21 6.8E-26 161.2 14.5 200 6-219 2-218 (289)
20 3cwq_A Para family chromosome 99.9 8E-21 2.7E-25 150.6 17.2 161 7-219 1-164 (209)
21 1cp2_A CP2, nitrogenase iron p 99.9 1.6E-21 5.4E-26 160.0 12.1 199 6-219 1-215 (269)
22 3kjh_A CO dehydrogenase/acetyl 99.9 2.1E-21 7.2E-26 157.2 11.7 194 9-219 3-222 (254)
23 2xj4_A MIPZ; replication, cell 99.9 1.9E-21 6.5E-26 161.3 11.6 194 5-219 3-225 (286)
24 3fwy_A Light-independent proto 99.9 5.1E-21 1.7E-25 160.4 14.0 195 5-219 47-258 (314)
25 3ug7_A Arsenical pump-driving 99.9 1.4E-20 4.7E-25 160.3 15.9 72 147-219 238-319 (349)
26 3zq6_A Putative arsenical pump 99.8 3.5E-20 1.2E-24 156.3 16.5 71 147-218 223-303 (324)
27 3fkq_A NTRC-like two-domain pr 99.8 2.7E-20 9.1E-25 159.9 10.1 210 4-233 141-368 (373)
28 3ez2_A Plasmid partition prote 99.8 9.9E-20 3.4E-24 157.6 12.1 202 4-219 106-350 (398)
29 3pg5_A Uncharacterized protein 99.8 2.3E-20 8E-25 159.6 7.5 37 6-42 1-37 (361)
30 3ez9_A Para; DNA binding, wing 99.8 2E-19 6.7E-24 156.0 12.5 202 4-221 109-355 (403)
31 2woo_A ATPase GET3; tail-ancho 99.8 5.8E-18 2E-22 143.0 16.6 68 148-216 223-301 (329)
32 2woj_A ATPase GET3; tail-ancho 99.8 1.1E-17 3.7E-22 142.6 17.2 39 148-186 237-275 (354)
33 2obn_A Hypothetical protein; s 99.7 2.5E-17 8.5E-22 138.5 15.3 170 5-214 151-337 (349)
34 3iqw_A Tail-anchored protein t 99.7 3.3E-17 1.1E-21 138.4 13.0 68 148-216 224-304 (334)
35 1ihu_A Arsenical pump-driving 99.7 4.5E-17 1.5E-21 147.6 12.5 167 6-189 7-240 (589)
36 3io3_A DEHA2D07832P; chaperone 99.7 1.5E-16 5E-21 135.0 14.5 67 148-216 233-313 (348)
37 1ihu_A Arsenical pump-driving 99.7 2.2E-17 7.4E-22 149.6 9.2 203 5-219 325-572 (589)
38 2xxa_A Signal recognition part 99.6 6.7E-15 2.3E-19 128.2 15.9 174 5-217 99-281 (433)
39 3igf_A ALL4481 protein; two-do 99.6 1.1E-15 3.6E-20 130.7 9.5 71 147-227 215-286 (374)
40 1zu4_A FTSY; GTPase, signal re 99.5 1.7E-12 5.7E-17 109.0 18.5 171 5-209 104-285 (320)
41 3dm5_A SRP54, signal recogniti 99.5 8.5E-13 2.9E-17 114.7 15.3 165 6-209 100-270 (443)
42 1j8m_F SRP54, signal recogniti 99.5 1.8E-12 6.1E-17 107.7 16.6 164 6-209 98-270 (297)
43 2ffh_A Protein (FFH); SRP54, s 99.5 1.2E-12 4E-17 113.6 14.9 166 5-209 97-268 (425)
44 1ls1_A Signal recognition part 99.4 6.2E-12 2.1E-16 104.4 16.1 163 5-209 97-268 (295)
45 2j37_W Signal recognition part 99.4 5.7E-12 2E-16 111.5 14.3 166 5-209 100-271 (504)
46 2v3c_C SRP54, signal recogniti 99.3 1.2E-11 4.2E-16 107.6 13.7 169 6-213 99-272 (432)
47 3kl4_A SRP54, signal recogniti 99.3 3.4E-11 1.2E-15 104.5 13.3 167 6-209 97-269 (433)
48 1vma_A Cell division protein F 99.3 1.2E-10 4.2E-15 96.9 14.5 164 5-209 103-280 (306)
49 2px0_A Flagellar biosynthesis 99.2 3.5E-10 1.2E-14 93.8 15.6 162 5-209 104-270 (296)
50 1yrb_A ATP(GTP)binding protein 99.1 1.5E-10 5.2E-15 93.9 9.0 37 5-42 12-48 (262)
51 2g0t_A Conserved hypothetical 99.0 1.5E-09 5E-14 91.5 11.6 142 5-184 168-323 (350)
52 2r8r_A Sensor protein; KDPD, P 98.9 4.9E-09 1.7E-13 83.0 9.2 38 5-42 4-41 (228)
53 3p32_A Probable GTPase RV1496/ 98.7 9.6E-08 3.3E-12 81.1 12.2 37 5-42 78-114 (355)
54 1xjc_A MOBB protein homolog; s 98.7 1.7E-07 6E-12 71.0 10.6 38 4-42 2-39 (169)
55 3e70_C DPA, signal recognition 98.5 2.8E-06 9.6E-11 71.2 15.4 163 5-209 128-299 (328)
56 2yhs_A FTSY, cell division pro 98.4 3.3E-06 1.1E-10 74.2 13.6 165 6-209 293-469 (503)
57 1s1m_A CTP synthase; CTP synth 98.4 1.7E-06 5.6E-11 76.9 10.6 175 6-186 3-214 (545)
58 1vco_A CTP synthetase; tetrame 98.4 2.2E-06 7.6E-11 76.2 10.7 176 5-186 11-225 (550)
59 3pzx_A Formate--tetrahydrofola 98.1 3.8E-06 1.3E-10 72.8 6.2 38 4-41 55-95 (557)
60 1np6_A Molybdopterin-guanine d 98.1 1.4E-05 4.9E-10 60.8 8.9 38 4-42 4-41 (174)
61 1u94_A RECA protein, recombina 97.9 0.00013 4.4E-09 61.8 11.9 36 6-42 63-98 (356)
62 2p67_A LAO/AO transport system 97.9 0.00021 7.1E-09 60.1 12.6 37 5-42 55-91 (341)
63 1xp8_A RECA protein, recombina 97.7 0.00036 1.2E-08 59.3 12.2 36 6-42 74-109 (366)
64 2cvh_A DNA repair and recombin 97.7 0.00056 1.9E-08 53.1 12.3 33 6-42 20-52 (220)
65 2rdo_7 EF-G, elongation factor 97.6 0.00082 2.8E-08 61.9 13.2 88 115-209 80-167 (704)
66 2zr9_A Protein RECA, recombina 97.6 0.00098 3.3E-08 56.2 12.4 36 6-42 61-96 (349)
67 1nks_A Adenylate kinase; therm 97.5 0.00015 5E-09 55.2 5.6 36 6-42 1-36 (194)
68 3hr8_A Protein RECA; alpha and 97.5 0.0018 6.2E-08 54.7 12.5 36 6-42 61-96 (356)
69 3io5_A Recombination and repai 97.4 0.0023 7.9E-08 53.1 11.9 34 8-42 30-65 (333)
70 3vqt_A RF-3, peptide chain rel 97.4 0.0016 5.5E-08 58.2 11.7 88 115-209 98-185 (548)
71 1xx6_A Thymidine kinase; NESG, 97.4 0.00033 1.1E-08 54.0 6.3 39 5-44 7-45 (191)
72 2b8t_A Thymidine kinase; deoxy 97.3 0.00034 1.2E-08 55.2 6.1 39 5-44 11-49 (223)
73 2f1r_A Molybdopterin-guanine d 97.3 0.00017 6E-09 54.5 4.1 37 5-42 1-37 (171)
74 2yvu_A Probable adenylyl-sulfa 97.3 0.00042 1.4E-08 52.7 6.2 36 6-42 13-48 (186)
75 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00037 1.3E-08 56.2 5.8 37 5-42 3-39 (260)
76 1nn5_A Similar to deoxythymidy 97.3 0.00045 1.6E-08 53.4 6.0 36 6-42 9-44 (215)
77 2orw_A Thymidine kinase; TMTK, 97.3 0.00051 1.8E-08 52.5 6.2 37 7-44 4-40 (184)
78 3uie_A Adenylyl-sulfate kinase 97.1 0.0006 2.1E-08 52.5 5.1 38 4-42 23-60 (200)
79 1g5t_A COB(I)alamin adenosyltr 97.1 0.00077 2.6E-08 52.0 5.5 34 7-42 30-63 (196)
80 1dar_A EF-G, elongation factor 97.1 0.0055 1.9E-07 56.3 12.0 86 116-208 76-161 (691)
81 1qf9_A UMP/CMP kinase, protein 97.0 0.00065 2.2E-08 51.5 4.7 30 1-31 1-30 (194)
82 2wwf_A Thymidilate kinase, put 97.0 0.0015 5.1E-08 50.4 6.4 36 6-42 10-45 (212)
83 2j9r_A Thymidine kinase; TK1, 97.0 0.0014 4.8E-08 51.2 6.1 39 5-44 27-65 (214)
84 1v5w_A DMC1, meiotic recombina 97.0 0.0031 1E-07 53.0 8.7 36 6-42 122-163 (343)
85 2pbr_A DTMP kinase, thymidylat 97.0 0.0012 4E-08 50.1 5.6 34 8-42 2-35 (195)
86 4fn5_A EF-G 1, elongation fact 96.9 0.014 4.9E-07 53.7 13.7 86 116-208 84-169 (709)
87 3tr5_A RF-3, peptide chain rel 96.9 0.017 5.9E-07 51.3 13.7 87 116-209 81-167 (528)
88 3trf_A Shikimate kinase, SK; a 96.9 0.00068 2.3E-08 51.3 3.9 27 4-31 3-29 (185)
89 2plr_A DTMP kinase, probable t 96.9 0.0011 3.6E-08 51.2 5.1 33 7-41 5-37 (213)
90 1kht_A Adenylate kinase; phosp 96.9 0.0011 3.9E-08 50.1 5.1 35 7-42 4-38 (192)
91 2z0h_A DTMP kinase, thymidylat 96.9 0.0013 4.6E-08 50.0 5.6 34 8-42 2-35 (197)
92 2dr3_A UPF0273 protein PH0284; 96.9 0.0014 4.6E-08 51.8 5.7 36 6-42 23-58 (247)
93 3ec2_A DNA replication protein 96.9 0.00099 3.4E-08 50.3 4.6 36 6-42 38-74 (180)
94 2pez_A Bifunctional 3'-phospho 96.9 0.0018 6E-08 48.8 5.9 37 5-42 4-40 (179)
95 2h5e_A Peptide chain release f 96.9 0.0075 2.6E-07 53.6 10.8 88 115-209 80-167 (529)
96 1a7j_A Phosphoribulokinase; tr 96.9 0.00062 2.1E-08 55.9 3.6 38 4-42 3-40 (290)
97 2w58_A DNAI, primosome compone 96.9 0.0013 4.5E-08 50.5 5.3 35 7-42 55-89 (202)
98 1rj9_A FTSY, signal recognitio 96.8 0.0014 4.8E-08 54.2 5.5 37 5-42 101-137 (304)
99 3iev_A GTP-binding protein ERA 96.8 0.031 1E-06 46.0 13.6 91 116-209 58-159 (308)
100 1rz3_A Hypothetical protein rb 96.8 0.0023 8E-08 49.3 6.2 37 5-42 21-57 (201)
101 1e6c_A Shikimate kinase; phosp 96.8 0.00099 3.4E-08 49.7 3.8 26 5-31 1-26 (173)
102 3lda_A DNA repair protein RAD5 96.7 0.011 3.7E-07 50.8 10.4 36 6-42 178-219 (400)
103 1via_A Shikimate kinase; struc 96.7 0.001 3.5E-08 49.9 3.6 26 5-31 3-28 (175)
104 3bh0_A DNAB-like replicative h 96.7 0.0021 7.3E-08 53.2 5.5 35 7-42 69-103 (315)
105 1uj2_A Uridine-cytidine kinase 96.7 0.0014 4.9E-08 52.3 4.3 37 5-42 21-62 (252)
106 3kb2_A SPBC2 prophage-derived 96.7 0.0013 4.5E-08 48.8 3.8 29 6-38 1-29 (173)
107 3t61_A Gluconokinase; PSI-biol 96.7 0.0014 4.7E-08 50.5 4.0 27 4-31 16-42 (202)
108 3bgw_A DNAB-like replicative h 96.7 0.0024 8.3E-08 55.5 5.9 35 7-42 198-232 (444)
109 1m7g_A Adenylylsulfate kinase; 96.7 0.0026 9E-08 49.3 5.6 37 5-42 24-61 (211)
110 3j25_A Tetracycline resistance 96.7 0.0036 1.2E-07 57.0 7.2 86 116-208 66-151 (638)
111 3ld9_A DTMP kinase, thymidylat 96.6 0.0018 6.3E-08 51.0 4.6 37 3-40 18-55 (223)
112 3b9q_A Chloroplast SRP recepto 96.6 0.0028 9.6E-08 52.3 5.9 37 5-42 99-135 (302)
113 1gtv_A TMK, thymidylate kinase 96.6 0.00072 2.5E-08 52.3 2.2 34 8-42 2-35 (214)
114 3bos_A Putative DNA replicatio 96.6 0.0029 1E-07 49.4 5.8 36 6-42 52-87 (242)
115 4a1f_A DNAB helicase, replicat 96.6 0.0032 1.1E-07 52.8 6.0 35 7-42 47-81 (338)
116 2orv_A Thymidine kinase; TP4A 96.6 0.0035 1.2E-07 49.6 5.8 39 5-44 18-56 (234)
117 2qgz_A Helicase loader, putati 96.6 0.0029 9.9E-08 52.3 5.6 36 6-42 152-188 (308)
118 3cmu_A Protein RECA, recombina 96.6 0.011 3.8E-07 59.9 10.4 36 6-42 1427-1462(2050)
119 2xex_A Elongation factor G; GT 96.6 0.038 1.3E-06 50.8 13.3 85 116-207 74-158 (693)
120 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.003 1E-07 49.2 5.3 36 6-42 23-58 (235)
121 2v54_A DTMP kinase, thymidylat 96.5 0.0019 6.6E-08 49.4 4.0 34 6-42 4-37 (204)
122 2kjq_A DNAA-related protein; s 96.5 0.0023 7.9E-08 47.0 4.2 36 6-42 36-71 (149)
123 1zuh_A Shikimate kinase; alpha 96.5 0.002 6.7E-08 48.0 3.9 30 5-38 6-35 (168)
124 1cke_A CK, MSSA, protein (cyti 96.5 0.0022 7.5E-08 50.0 4.3 29 1-31 1-29 (227)
125 2c5m_A CTP synthase; cytidine 96.5 0.024 8.1E-07 45.2 9.9 38 5-42 22-60 (294)
126 2if2_A Dephospho-COA kinase; a 96.5 0.0016 5.6E-08 50.0 3.4 32 6-42 1-32 (204)
127 2og2_A Putative signal recogni 96.5 0.0039 1.3E-07 52.7 5.9 37 5-42 156-192 (359)
128 2wsm_A Hydrogenase expression/ 96.5 0.0034 1.2E-07 48.7 5.1 36 5-42 29-64 (221)
129 2iyv_A Shikimate kinase, SK; t 96.4 0.0023 7.7E-08 48.3 3.5 25 6-31 2-26 (184)
130 1w4r_A Thymidine kinase; type 96.4 0.0071 2.4E-07 46.5 6.2 40 4-44 18-57 (195)
131 3vaa_A Shikimate kinase, SK; s 96.4 0.003 1E-07 48.5 4.1 26 5-31 24-49 (199)
132 1cr0_A DNA primase/helicase; R 96.3 0.0058 2E-07 49.9 6.0 36 6-42 35-71 (296)
133 4edh_A DTMP kinase, thymidylat 96.3 0.0058 2E-07 47.7 5.6 36 6-42 6-41 (213)
134 2rhm_A Putative kinase; P-loop 96.3 0.005 1.7E-07 46.6 5.1 25 6-31 5-29 (193)
135 1qhx_A CPT, protein (chloramph 96.3 0.0027 9.2E-08 47.5 3.4 24 7-31 4-27 (178)
136 2c78_A Elongation factor TU-A; 96.3 0.044 1.5E-06 46.9 11.4 66 116-186 74-139 (405)
137 1ukz_A Uridylate kinase; trans 96.3 0.0033 1.1E-07 48.2 3.9 27 4-31 13-39 (203)
138 4eun_A Thermoresistant glucoki 96.2 0.0053 1.8E-07 47.1 4.9 26 5-31 28-53 (200)
139 3nva_A CTP synthase; rossman f 96.2 0.032 1.1E-06 49.1 10.3 120 5-129 2-148 (535)
140 2c95_A Adenylate kinase 1; tra 96.2 0.0042 1.4E-07 47.1 4.3 25 6-31 9-33 (196)
141 1uf9_A TT1252 protein; P-loop, 96.2 0.0046 1.6E-07 47.2 4.4 29 5-38 7-35 (203)
142 1kag_A SKI, shikimate kinase I 96.2 0.0031 1E-07 47.0 3.3 25 6-31 4-28 (173)
143 3c8u_A Fructokinase; YP_612366 96.2 0.0076 2.6E-07 46.5 5.6 37 5-42 21-57 (208)
144 1jjv_A Dephospho-COA kinase; P 96.2 0.0043 1.5E-07 47.7 4.1 28 6-38 2-29 (206)
145 1y63_A LMAJ004144AAA protein; 96.2 0.0048 1.6E-07 46.7 4.2 26 4-30 8-33 (184)
146 2q6t_A DNAB replication FORK h 96.1 0.0079 2.7E-07 52.2 6.1 35 7-42 201-236 (444)
147 2ze6_A Isopentenyl transferase 96.1 0.0044 1.5E-07 49.6 4.1 33 6-42 1-33 (253)
148 1jbk_A CLPB protein; beta barr 96.1 0.01 3.5E-07 44.2 5.9 27 6-33 43-69 (195)
149 2zts_A Putative uncharacterize 96.1 0.0074 2.5E-07 47.5 5.4 35 7-42 31-66 (251)
150 2r6a_A DNAB helicase, replicat 96.1 0.0078 2.7E-07 52.4 5.9 35 7-42 204-239 (454)
151 3do6_A Formate--tetrahydrofola 96.1 0.0045 1.5E-07 53.6 4.2 37 5-41 42-81 (543)
152 3iij_A Coilin-interacting nucl 96.1 0.0053 1.8E-07 46.1 4.3 25 6-31 11-35 (180)
153 2ywe_A GTP-binding protein LEP 96.1 0.079 2.7E-06 47.8 12.5 85 116-207 72-156 (600)
154 3e2i_A Thymidine kinase; Zn-bi 96.1 0.013 4.3E-07 45.9 6.2 38 6-44 28-65 (219)
155 2bwj_A Adenylate kinase 5; pho 96.0 0.0043 1.5E-07 47.2 3.4 25 6-31 12-36 (199)
156 1knq_A Gluconate kinase; ALFA/ 96.0 0.01 3.4E-07 44.3 5.4 26 5-31 7-32 (175)
157 3hjn_A DTMP kinase, thymidylat 96.0 0.0095 3.2E-07 45.8 5.4 33 9-42 3-35 (197)
158 3asz_A Uridine kinase; cytidin 96.0 0.006 2.1E-07 47.0 4.2 38 1-42 1-38 (211)
159 3be4_A Adenylate kinase; malar 96.0 0.0075 2.6E-07 46.9 4.8 31 5-39 4-34 (217)
160 3lv8_A DTMP kinase, thymidylat 96.0 0.012 4E-07 46.8 5.9 35 7-42 28-63 (236)
161 3lw7_A Adenylate kinase relate 96.0 0.007 2.4E-07 44.7 4.4 28 8-40 3-30 (179)
162 2gks_A Bifunctional SAT/APS ki 96.0 0.0085 2.9E-07 53.5 5.6 36 6-42 372-407 (546)
163 3cmu_A Protein RECA, recombina 95.9 0.043 1.5E-06 55.8 10.9 36 6-42 383-418 (2050)
164 4hlc_A DTMP kinase, thymidylat 95.9 0.0098 3.3E-07 46.1 5.2 36 5-42 1-36 (205)
165 1l8q_A Chromosomal replication 95.9 0.0094 3.2E-07 49.2 5.4 36 6-42 37-72 (324)
166 3e1s_A Exodeoxyribonuclease V, 95.9 0.0088 3E-07 53.7 5.5 36 7-43 205-240 (574)
167 3v9p_A DTMP kinase, thymidylat 95.9 0.0075 2.6E-07 47.6 4.5 35 7-42 26-64 (227)
168 1m8p_A Sulfate adenylyltransfe 95.9 0.01 3.5E-07 53.3 5.8 37 5-42 395-432 (573)
169 1ly1_A Polynucleotide kinase; 95.9 0.0063 2.2E-07 45.4 3.9 22 7-29 3-24 (181)
170 3cm0_A Adenylate kinase; ATP-b 95.9 0.0068 2.3E-07 45.6 4.0 25 6-31 4-28 (186)
171 4tmk_A Protein (thymidylate ki 95.9 0.015 5E-07 45.4 5.9 36 6-42 3-39 (213)
172 2r2a_A Uncharacterized protein 95.9 0.0067 2.3E-07 46.9 3.8 37 4-41 3-45 (199)
173 1x6v_B Bifunctional 3'-phospho 95.8 0.011 3.7E-07 53.6 5.6 37 5-42 51-87 (630)
174 2p65_A Hypothetical protein PF 95.8 0.01 3.5E-07 44.2 4.7 28 6-34 43-70 (187)
175 4eaq_A DTMP kinase, thymidylat 95.8 0.011 3.7E-07 46.6 5.0 35 5-41 25-59 (229)
176 2hf9_A Probable hydrogenase ni 95.8 0.011 3.9E-07 45.8 5.1 36 5-42 37-72 (226)
177 3crm_A TRNA delta(2)-isopenten 95.8 0.006 2.1E-07 50.7 3.6 36 3-42 2-37 (323)
178 3ake_A Cytidylate kinase; CMP 95.8 0.0076 2.6E-07 46.1 4.0 24 7-31 3-26 (208)
179 1tev_A UMP-CMP kinase; ploop, 95.8 0.008 2.8E-07 45.3 4.1 25 6-31 3-27 (196)
180 1odf_A YGR205W, hypothetical 3 95.8 0.0087 3E-07 49.0 4.5 35 6-41 31-67 (290)
181 1q57_A DNA primase/helicase; d 95.8 0.0073 2.5E-07 53.3 4.3 35 7-42 243-278 (503)
182 1aky_A Adenylate kinase; ATP:A 95.8 0.0083 2.8E-07 46.6 4.1 26 5-31 3-28 (220)
183 1zak_A Adenylate kinase; ATP:A 95.7 0.008 2.7E-07 46.8 4.0 26 5-31 4-29 (222)
184 2vli_A Antibiotic resistance p 95.7 0.004 1.4E-07 46.7 2.0 26 5-31 4-29 (183)
185 2z43_A DNA repair and recombin 95.7 0.0093 3.2E-07 49.5 4.4 36 6-42 107-148 (324)
186 3umf_A Adenylate kinase; rossm 95.7 0.01 3.5E-07 46.5 4.3 26 5-31 28-53 (217)
187 3d3q_A TRNA delta(2)-isopenten 95.7 0.0068 2.3E-07 50.8 3.4 24 7-31 8-31 (340)
188 1zd8_A GTP:AMP phosphotransfer 95.6 0.0079 2.7E-07 47.1 3.4 26 5-31 6-31 (227)
189 1nij_A Hypothetical protein YJ 95.5 0.0076 2.6E-07 50.0 3.3 38 4-44 2-39 (318)
190 2www_A Methylmalonic aciduria 95.5 0.02 6.8E-07 48.1 5.9 36 6-42 74-109 (349)
191 2cdn_A Adenylate kinase; phosp 95.5 0.013 4.4E-07 44.8 4.3 28 7-38 21-48 (201)
192 1nlf_A Regulatory protein REPA 95.5 0.018 6.2E-07 46.5 5.4 36 6-42 30-75 (279)
193 2dy1_A Elongation factor G; tr 95.5 0.19 6.3E-06 45.9 12.4 82 116-205 73-154 (665)
194 1w78_A FOLC bifunctional prote 95.4 0.02 6.9E-07 49.3 5.7 36 4-42 47-82 (422)
195 2jaq_A Deoxyguanosine kinase; 95.4 0.012 4.1E-07 44.8 3.9 24 8-32 2-25 (205)
196 3syl_A Protein CBBX; photosynt 95.4 0.025 8.4E-07 46.1 6.0 36 6-42 67-106 (309)
197 2grj_A Dephospho-COA kinase; T 95.4 0.012 4.1E-07 45.1 3.8 29 7-39 13-41 (192)
198 3r20_A Cytidylate kinase; stru 95.4 0.012 4.3E-07 46.5 4.0 24 7-31 10-33 (233)
199 2f6r_A COA synthase, bifunctio 95.4 0.02 6.7E-07 46.5 5.3 31 5-40 74-104 (281)
200 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0081 2.8E-07 49.9 2.9 32 7-42 124-155 (331)
201 2axn_A 6-phosphofructo-2-kinas 95.4 0.023 8E-07 50.3 6.1 36 6-42 35-70 (520)
202 3tqc_A Pantothenate kinase; bi 95.4 0.02 6.8E-07 47.6 5.2 36 6-42 92-129 (321)
203 1ak2_A Adenylate kinase isoenz 95.3 0.015 5E-07 45.7 4.2 26 5-31 15-40 (233)
204 2pt5_A Shikimate kinase, SK; a 95.3 0.015 5.1E-07 42.9 3.9 23 8-31 2-24 (168)
205 1jbw_A Folylpolyglutamate synt 95.2 0.022 7.6E-07 49.1 5.3 35 5-42 38-72 (428)
206 4e22_A Cytidylate kinase; P-lo 95.2 0.015 5.2E-07 46.4 3.9 25 6-31 27-51 (252)
207 3nrs_A Dihydrofolate:folylpoly 95.2 0.027 9.1E-07 48.8 5.7 36 4-42 50-85 (437)
208 4b3f_X DNA-binding protein smu 95.2 0.022 7.6E-07 51.8 5.4 35 8-43 207-241 (646)
209 3tau_A Guanylate kinase, GMP k 95.2 0.017 5.7E-07 44.6 4.0 26 5-31 7-32 (208)
210 4ag6_A VIRB4 ATPase, type IV s 95.2 0.021 7.3E-07 48.5 5.0 37 7-44 36-72 (392)
211 3tlx_A Adenylate kinase 2; str 95.2 0.019 6.4E-07 45.6 4.3 30 6-39 29-58 (243)
212 1d2e_A Elongation factor TU (E 95.2 0.18 6.1E-06 42.9 10.7 67 115-186 64-130 (397)
213 1n0w_A DNA repair protein RAD5 95.1 0.018 6.2E-07 45.0 4.2 36 6-42 24-65 (243)
214 2bbw_A Adenylate kinase 4, AK4 95.1 0.018 6E-07 45.6 4.1 25 6-31 27-51 (246)
215 4fcw_A Chaperone protein CLPB; 95.1 0.025 8.7E-07 46.0 5.1 35 7-42 48-82 (311)
216 3t15_A Ribulose bisphosphate c 95.1 0.028 9.6E-07 45.9 5.3 33 6-42 36-68 (293)
217 2qby_B CDC6 homolog 3, cell di 95.1 0.034 1.2E-06 46.6 6.0 36 6-42 45-88 (384)
218 2chg_A Replication factor C sm 95.1 0.019 6.5E-07 43.8 4.1 35 7-42 39-73 (226)
219 2j41_A Guanylate kinase; GMP, 95.1 0.012 4.1E-07 44.9 2.9 27 4-31 4-30 (207)
220 3upu_A ATP-dependent DNA helic 95.1 0.028 9.5E-07 48.9 5.4 34 8-42 47-81 (459)
221 3cmw_A Protein RECA, recombina 95.0 0.15 5.1E-06 51.2 11.1 36 6-42 1431-1466(1706)
222 3fb4_A Adenylate kinase; psych 95.0 0.018 6.2E-07 44.4 3.8 28 8-39 2-29 (216)
223 1e4v_A Adenylate kinase; trans 95.0 0.025 8.7E-07 43.6 4.6 28 8-39 2-29 (214)
224 2qt1_A Nicotinamide riboside k 95.0 0.019 6.6E-07 44.0 3.8 33 5-42 20-52 (207)
225 2ehv_A Hypothetical protein PH 95.0 0.034 1.2E-06 43.6 5.4 36 6-42 30-66 (251)
226 1vht_A Dephospho-COA kinase; s 94.9 0.03 1E-06 43.3 4.8 27 7-38 5-31 (218)
227 1sq5_A Pantothenate kinase; P- 94.9 0.035 1.2E-06 45.7 5.3 37 5-42 79-117 (308)
228 3a8t_A Adenylate isopentenyltr 94.9 0.012 4.2E-07 49.1 2.5 24 7-31 41-64 (339)
229 2qby_A CDC6 homolog 1, cell di 94.8 0.038 1.3E-06 46.1 5.6 36 6-42 45-83 (386)
230 1g8f_A Sulfate adenylyltransfe 94.8 0.019 6.5E-07 50.7 3.8 37 5-42 394-432 (511)
231 1o5z_A Folylpolyglutamate synt 94.8 0.031 1.1E-06 48.4 5.1 35 5-42 51-85 (442)
232 2qor_A Guanylate kinase; phosp 94.8 0.019 6.6E-07 44.0 3.4 25 6-31 12-36 (204)
233 2vos_A Folylpolyglutamate synt 94.8 0.034 1.2E-06 48.9 5.3 36 4-42 62-97 (487)
234 2z4s_A Chromosomal replication 94.8 0.031 1.1E-06 48.4 5.0 36 6-42 130-167 (440)
235 1e9r_A Conjugal transfer prote 94.7 0.042 1.5E-06 47.3 5.8 38 7-45 54-91 (437)
236 1zp6_A Hypothetical protein AT 94.7 0.027 9.3E-07 42.4 4.0 24 6-30 9-32 (191)
237 3eag_A UDP-N-acetylmuramate:L- 94.7 0.036 1.2E-06 46.0 5.0 33 5-40 107-139 (326)
238 3dl0_A Adenylate kinase; phosp 94.7 0.02 6.7E-07 44.3 3.1 28 8-39 2-29 (216)
239 2xb4_A Adenylate kinase; ATP-b 94.6 0.036 1.2E-06 43.2 4.7 27 8-38 2-28 (223)
240 1gvn_B Zeta; postsegregational 94.6 0.024 8.1E-07 46.2 3.6 25 6-31 33-57 (287)
241 1g7s_A Translation initiation 94.6 0.24 8.2E-06 44.6 10.4 62 117-186 70-133 (594)
242 1e8c_A UDP-N-acetylmuramoylala 94.6 0.042 1.4E-06 48.4 5.4 35 5-42 107-141 (498)
243 2qm8_A GTPase/ATPase; G protei 94.6 0.056 1.9E-06 45.1 5.9 37 5-42 54-90 (337)
244 2i1q_A DNA repair and recombin 94.5 0.03 1E-06 46.2 4.1 36 6-42 98-149 (322)
245 1fnn_A CDC6P, cell division co 94.5 0.041 1.4E-06 46.1 5.0 35 7-42 45-80 (389)
246 2p5t_B PEZT; postsegregational 94.5 0.019 6.5E-07 45.8 2.7 33 6-42 32-64 (253)
247 1kgd_A CASK, peripheral plasma 94.5 0.025 8.7E-07 42.5 3.3 26 6-32 5-30 (180)
248 3aez_A Pantothenate kinase; tr 94.5 0.055 1.9E-06 44.7 5.6 37 5-42 89-127 (312)
249 3hdt_A Putative kinase; struct 94.5 0.039 1.3E-06 43.3 4.4 29 6-38 14-42 (223)
250 2v1u_A Cell division control p 94.4 0.041 1.4E-06 46.0 4.9 37 5-42 43-85 (387)
251 2jeo_A Uridine-cytidine kinase 94.4 0.036 1.2E-06 43.8 4.3 26 5-31 24-49 (245)
252 3tr0_A Guanylate kinase, GMP k 94.4 0.028 9.7E-07 42.8 3.5 25 6-31 7-31 (205)
253 2wtz_A UDP-N-acetylmuramoyl-L- 94.4 0.048 1.6E-06 48.5 5.4 35 5-42 145-179 (535)
254 3n70_A Transport activator; si 94.4 0.021 7.2E-07 41.4 2.6 34 7-42 25-58 (145)
255 3exa_A TRNA delta(2)-isopenten 94.4 0.024 8.3E-07 46.9 3.2 25 6-31 3-27 (322)
256 3cmw_A Protein RECA, recombina 94.3 0.046 1.6E-06 54.8 5.5 35 7-42 733-767 (1706)
257 4a74_A DNA repair and recombin 94.3 0.044 1.5E-06 42.4 4.4 36 6-42 25-66 (231)
258 2bdt_A BH3686; alpha-beta prot 94.3 0.034 1.2E-06 41.9 3.6 23 6-29 2-24 (189)
259 1pzn_A RAD51, DNA repair and r 94.3 0.044 1.5E-06 46.0 4.6 36 6-42 131-172 (349)
260 3ch4_B Pmkase, phosphomevalona 94.2 0.051 1.7E-06 41.9 4.5 27 4-31 9-35 (202)
261 1c9k_A COBU, adenosylcobinamid 94.2 0.033 1.1E-06 42.2 3.4 29 9-42 2-30 (180)
262 3nwj_A ATSK2; P loop, shikimat 94.1 0.038 1.3E-06 44.2 3.7 25 6-31 48-72 (250)
263 1w36_D RECD, exodeoxyribonucle 94.1 0.052 1.8E-06 49.0 5.0 36 7-43 165-204 (608)
264 2eyu_A Twitching motility prot 94.1 0.087 3E-06 42.3 5.8 36 6-42 25-61 (261)
265 3tmk_A Thymidylate kinase; pho 94.0 0.057 2E-06 42.1 4.5 31 1-33 1-31 (216)
266 3eph_A TRNA isopentenyltransfe 93.9 0.048 1.7E-06 46.6 4.2 26 6-32 2-27 (409)
267 1ltq_A Polynucleotide kinase; 93.9 0.044 1.5E-06 44.5 3.9 23 7-30 3-25 (301)
268 2i3b_A HCR-ntpase, human cance 93.9 0.055 1.9E-06 41.2 4.1 27 8-35 3-29 (189)
269 2bjv_A PSP operon transcriptio 93.9 0.038 1.3E-06 44.1 3.3 35 7-42 30-64 (265)
270 3sr0_A Adenylate kinase; phosp 93.8 0.05 1.7E-06 42.1 3.8 23 8-31 2-24 (206)
271 2qz4_A Paraplegin; AAA+, SPG7, 93.8 0.091 3.1E-06 41.5 5.5 33 6-42 39-71 (262)
272 2gk6_A Regulator of nonsense t 93.8 0.065 2.2E-06 48.5 5.1 34 8-42 197-231 (624)
273 3foz_A TRNA delta(2)-isopenten 93.8 0.048 1.7E-06 45.0 3.8 25 6-31 10-34 (316)
274 1tf7_A KAIC; homohexamer, hexa 93.7 0.074 2.5E-06 47.1 5.2 36 6-42 281-316 (525)
275 1q3t_A Cytidylate kinase; nucl 93.7 0.059 2E-06 42.3 4.2 26 5-31 15-40 (236)
276 1ofh_A ATP-dependent HSL prote 93.7 0.088 3E-06 42.6 5.3 33 6-42 50-82 (310)
277 1tue_A Replication protein E1; 93.7 0.044 1.5E-06 42.5 3.2 24 7-31 59-82 (212)
278 2ewv_A Twitching motility prot 93.6 0.1 3.6E-06 44.1 5.8 37 5-42 135-172 (372)
279 4ehx_A Tetraacyldisaccharide 4 93.6 0.076 2.6E-06 43.9 4.8 35 5-41 35-70 (315)
280 1j6u_A UDP-N-acetylmuramate-al 93.6 0.078 2.7E-06 46.3 5.1 33 6-41 114-146 (469)
281 3a00_A Guanylate kinase, GMP k 93.5 0.04 1.4E-06 41.6 2.7 25 7-32 2-26 (186)
282 1lvg_A Guanylate kinase, GMP k 93.4 0.059 2E-06 41.2 3.6 26 6-32 4-29 (198)
283 1ye8_A Protein THEP1, hypothet 93.3 0.072 2.5E-06 40.1 3.9 24 8-32 2-25 (178)
284 3tqf_A HPR(Ser) kinase; transf 93.3 0.099 3.4E-06 39.4 4.5 30 6-40 16-45 (181)
285 2x5o_A UDP-N-acetylmuramoylala 93.2 0.11 3.8E-06 44.9 5.4 33 6-41 104-136 (439)
286 3hn7_A UDP-N-acetylmuramate-L- 93.2 0.096 3.3E-06 46.4 5.1 33 5-40 121-153 (524)
287 3te6_A Regulatory protein SIR3 93.2 0.1 3.5E-06 43.2 4.9 29 5-34 44-72 (318)
288 2a5y_B CED-4; apoptosis; HET: 93.2 0.064 2.2E-06 47.7 3.9 24 5-29 151-174 (549)
289 2wjy_A Regulator of nonsense t 93.2 0.094 3.2E-06 48.9 5.1 35 7-42 372-407 (800)
290 3jvv_A Twitching mobility prot 93.1 0.12 4.2E-06 43.4 5.4 36 6-42 123-159 (356)
291 2ocp_A DGK, deoxyguanosine kin 93.1 0.065 2.2E-06 42.1 3.5 26 6-32 2-27 (241)
292 1p5z_B DCK, deoxycytidine kina 93.1 0.021 7E-07 45.8 0.6 27 5-32 23-49 (263)
293 3ney_A 55 kDa erythrocyte memb 93.1 0.072 2.5E-06 41.0 3.6 25 6-31 19-43 (197)
294 3fdi_A Uncharacterized protein 93.1 0.071 2.4E-06 41.0 3.6 28 7-38 7-34 (201)
295 1bif_A 6-phosphofructo-2-kinas 93.1 0.14 4.9E-06 44.5 5.9 35 7-42 40-74 (469)
296 1njg_A DNA polymerase III subu 93.1 0.076 2.6E-06 40.8 3.8 28 7-35 46-73 (250)
297 3lk7_A UDP-N-acetylmuramoylala 93.0 0.11 3.9E-06 44.9 5.2 32 6-40 112-143 (451)
298 3cr8_A Sulfate adenylyltranfer 92.9 0.093 3.2E-06 46.8 4.6 36 6-42 369-405 (552)
299 1xwi_A SKD1 protein; VPS4B, AA 92.9 0.12 4.2E-06 42.6 5.1 35 5-42 44-78 (322)
300 2vo1_A CTP synthase 1; pyrimid 92.9 0.2 7E-06 40.1 6.0 39 4-42 21-60 (295)
301 1w5s_A Origin recognition comp 92.9 0.1 3.5E-06 44.0 4.7 36 6-42 50-93 (412)
302 1sxj_A Activator 1 95 kDa subu 92.9 0.1 3.6E-06 46.0 4.9 33 6-42 77-109 (516)
303 1um8_A ATP-dependent CLP prote 92.9 0.12 4E-06 43.5 5.0 33 6-42 72-104 (376)
304 2qmh_A HPR kinase/phosphorylas 92.9 0.069 2.4E-06 41.2 3.2 32 6-42 34-65 (205)
305 1d2n_A N-ethylmaleimide-sensit 92.8 0.1 3.5E-06 41.7 4.2 34 5-42 63-96 (272)
306 2h92_A Cytidylate kinase; ross 92.7 0.073 2.5E-06 41.0 3.2 24 7-31 4-27 (219)
307 3lnc_A Guanylate kinase, GMP k 92.7 0.048 1.6E-06 42.6 2.1 26 5-31 26-52 (231)
308 3h4m_A Proteasome-activating n 92.5 0.085 2.9E-06 42.4 3.5 33 6-42 51-83 (285)
309 1lv7_A FTSH; alpha/beta domain 92.5 0.11 3.9E-06 41.0 4.2 33 6-42 45-77 (257)
310 3pxi_A Negative regulator of g 92.3 0.18 6E-06 46.7 5.7 34 8-42 523-556 (758)
311 2dyk_A GTP-binding protein; GT 92.3 0.12 4.1E-06 37.1 3.7 22 6-28 1-22 (161)
312 3pxg_A Negative regulator of g 92.1 0.12 4E-06 45.1 4.1 26 7-33 202-227 (468)
313 3hws_A ATP-dependent CLP prote 92.1 0.15 5.3E-06 42.6 4.6 33 6-42 51-83 (363)
314 1ex7_A Guanylate kinase; subst 92.0 0.11 3.8E-06 39.5 3.4 24 7-31 2-25 (186)
315 2xzl_A ATP-dependent helicase 92.0 0.16 5.5E-06 47.4 5.1 34 8-42 377-411 (802)
316 3b9p_A CG5977-PA, isoform A; A 92.0 0.11 3.7E-06 42.0 3.5 33 6-42 54-86 (297)
317 2qp9_X Vacuolar protein sortin 92.0 0.21 7.1E-06 41.8 5.3 33 6-42 84-116 (355)
318 1p9r_A General secretion pathw 92.0 0.17 5.7E-06 43.6 4.8 37 5-42 166-202 (418)
319 3uk6_A RUVB-like 2; hexameric 92.0 0.12 4.3E-06 43.0 3.9 25 7-32 71-95 (368)
320 3zvl_A Bifunctional polynucleo 91.9 0.083 2.8E-06 45.4 2.8 26 5-31 257-282 (416)
321 3eie_A Vacuolar protein sortin 91.8 0.15 5.1E-06 42.0 4.2 33 6-42 51-83 (322)
322 3cf0_A Transitional endoplasmi 91.8 0.12 4.1E-06 42.2 3.5 33 6-42 49-81 (301)
323 1in4_A RUVB, holliday junction 91.8 0.14 4.7E-06 42.5 3.9 24 7-31 52-75 (334)
324 1znw_A Guanylate kinase, GMP k 91.8 0.12 4.1E-06 39.6 3.3 26 6-32 20-45 (207)
325 3d8b_A Fidgetin-like protein 1 91.7 0.2 6.9E-06 41.9 5.0 34 5-42 116-149 (357)
326 1qvr_A CLPB protein; coiled co 91.7 0.19 6.6E-06 47.1 5.3 35 7-42 192-233 (854)
327 1z6g_A Guanylate kinase; struc 91.7 0.11 3.7E-06 40.3 3.1 25 6-31 23-47 (218)
328 3avx_A Elongation factor TS, e 91.6 1.3 4.5E-05 43.1 10.8 29 6-35 296-324 (1289)
329 2v9p_A Replication protein E1; 91.5 0.17 6E-06 41.5 4.3 30 6-39 126-155 (305)
330 1htw_A HI0065; nucleotide-bind 91.4 0.17 5.9E-06 37.2 3.8 25 6-31 33-57 (158)
331 4hv4_A UDP-N-acetylmuramate--L 91.4 0.24 8.2E-06 43.5 5.3 30 6-38 122-151 (494)
332 1dek_A Deoxynucleoside monopho 91.4 0.16 5.4E-06 40.3 3.7 29 6-38 1-29 (241)
333 4b4t_L 26S protease subunit RP 91.3 0.3 1E-05 42.2 5.6 34 5-42 214-247 (437)
334 4i1u_A Dephospho-COA kinase; s 91.2 0.24 8.1E-06 38.4 4.5 33 5-42 8-40 (210)
335 1s96_A Guanylate kinase, GMP k 91.0 0.16 5.6E-06 39.5 3.4 26 6-32 16-41 (219)
336 1qvr_A CLPB protein; coiled co 90.9 0.2 7E-06 47.0 4.6 35 7-42 589-623 (854)
337 1ojl_A Transcriptional regulat 90.9 0.13 4.4E-06 42.2 2.9 35 7-42 26-60 (304)
338 1ixz_A ATP-dependent metallopr 90.9 0.15 5E-06 40.3 3.1 24 7-31 50-73 (254)
339 2vp4_A Deoxynucleoside kinase; 90.8 0.14 4.7E-06 40.0 2.8 32 6-42 20-51 (230)
340 4b4t_K 26S protease regulatory 90.8 0.21 7.1E-06 43.1 4.1 33 6-42 206-238 (428)
341 3gmt_A Adenylate kinase; ssgci 90.7 0.22 7.5E-06 39.2 3.9 23 8-31 10-32 (230)
342 1hqc_A RUVB; extended AAA-ATPa 90.6 0.22 7.6E-06 40.6 4.1 32 7-42 39-70 (324)
343 1z6t_A APAF-1, apoptotic prote 90.6 0.19 6.5E-06 44.8 3.9 26 5-31 146-171 (591)
344 2zan_A Vacuolar protein sortin 90.6 0.26 9E-06 42.6 4.7 35 5-42 166-200 (444)
345 2r62_A Cell division protease 90.4 0.1 3.4E-06 41.6 1.8 24 7-31 45-68 (268)
346 3pfi_A Holliday junction ATP-d 90.4 0.19 6.4E-06 41.4 3.5 32 6-41 55-86 (338)
347 1p3d_A UDP-N-acetylmuramate--a 90.4 0.28 9.5E-06 42.8 4.7 30 6-38 118-147 (475)
348 2ga8_A Hypothetical 39.9 kDa p 90.4 0.27 9.3E-06 41.3 4.4 27 6-33 24-50 (359)
349 2c9o_A RUVB-like 1; hexameric 90.3 0.23 7.9E-06 43.0 4.1 25 7-32 64-88 (456)
350 3t5g_A GTP-binding protein RHE 90.2 0.21 7.2E-06 36.7 3.3 27 1-28 1-27 (181)
351 2f9l_A RAB11B, member RAS onco 90.2 0.21 7.1E-06 37.7 3.3 27 1-29 1-27 (199)
352 4b4t_M 26S protease regulatory 90.1 0.26 8.8E-06 42.6 4.2 33 6-42 215-247 (434)
353 1sxj_C Activator 1 40 kDa subu 90.1 0.18 6.1E-06 41.7 3.1 30 8-38 48-77 (340)
354 1osn_A Thymidine kinase, VZV-T 90.0 0.099 3.4E-06 43.7 1.5 35 6-42 12-47 (341)
355 3clv_A RAB5 protein, putative; 90.0 0.33 1.1E-05 36.1 4.4 86 117-209 93-181 (208)
356 4gp7_A Metallophosphoesterase; 90.0 0.2 6.8E-06 37.1 3.0 20 6-26 9-28 (171)
357 2fna_A Conserved hypothetical 90.0 0.41 1.4E-05 39.2 5.2 32 7-42 31-62 (357)
358 2f00_A UDP-N-acetylmuramate--L 89.9 0.34 1.2E-05 42.4 4.9 30 6-38 119-148 (491)
359 3iby_A Ferrous iron transport 89.8 0.23 7.9E-06 39.6 3.4 22 6-28 1-22 (256)
360 4b4t_J 26S protease regulatory 89.7 0.26 8.9E-06 42.1 3.8 34 5-42 181-214 (405)
361 3lfu_A DNA helicase II; SF1 he 89.6 0.37 1.3E-05 43.4 5.1 34 8-42 24-61 (647)
362 2x8a_A Nuclear valosin-contain 89.6 0.21 7.1E-06 40.3 3.0 31 8-42 46-76 (274)
363 3ice_A Transcription terminati 89.6 0.39 1.3E-05 41.0 4.8 32 6-38 174-205 (422)
364 1iqp_A RFCS; clamp loader, ext 89.6 0.3 1E-05 39.6 4.1 28 7-35 47-74 (327)
365 1iy2_A ATP-dependent metallopr 89.5 0.22 7.5E-06 39.9 3.1 24 8-32 75-98 (278)
366 1of1_A Thymidine kinase; trans 89.5 0.24 8.2E-06 41.9 3.4 32 8-42 51-82 (376)
367 1r6b_X CLPA protein; AAA+, N-t 89.5 0.49 1.7E-05 43.6 5.8 33 6-42 488-520 (758)
368 2gza_A Type IV secretion syste 89.4 0.14 4.9E-06 43.0 2.0 34 6-40 175-208 (361)
369 2npi_A Protein CLP1; CLP1-PCF1 89.4 0.24 8.1E-06 43.2 3.4 36 6-42 138-174 (460)
370 1e2k_A Thymidine kinase; trans 89.3 0.21 7.3E-06 41.5 2.9 33 7-42 5-37 (331)
371 2lkc_A Translation initiation 89.3 0.34 1.2E-05 35.3 3.9 38 148-186 81-118 (178)
372 3r6d_A NAD-dependent epimerase 89.3 0.31 1.1E-05 37.3 3.8 35 3-42 2-37 (221)
373 3bs4_A Uncharacterized protein 89.3 0.46 1.6E-05 38.1 4.8 35 7-42 22-56 (260)
374 3u61_B DNA polymerase accessor 89.2 0.39 1.3E-05 39.2 4.5 32 8-42 49-80 (324)
375 1gg4_A UDP-N-acetylmuramoylala 89.2 0.34 1.1E-05 42.0 4.2 31 5-39 99-129 (452)
376 1sxj_D Activator 1 41 kDa subu 89.2 0.3 1E-05 40.2 3.8 26 7-33 59-84 (353)
377 1f0k_A MURG, UDP-N-acetylgluco 89.2 0.3 1E-05 40.2 3.8 40 1-42 1-41 (364)
378 1jr3_A DNA polymerase III subu 89.1 0.35 1.2E-05 40.1 4.2 26 7-33 39-64 (373)
379 2d1y_A Hypothetical protein TT 89.1 0.32 1.1E-05 38.4 3.7 37 1-42 1-37 (256)
380 1svm_A Large T antigen; AAA+ f 89.0 0.36 1.2E-05 40.9 4.1 25 6-31 169-193 (377)
381 2ce2_X GTPase HRAS; signaling 89.0 0.34 1.2E-05 34.6 3.6 89 116-210 50-143 (166)
382 1upt_A ARL1, ADP-ribosylation 88.9 0.4 1.4E-05 34.6 4.0 21 7-28 8-28 (171)
383 3bwd_D RAC-like GTP-binding pr 88.9 0.35 1.2E-05 35.4 3.7 25 3-28 5-29 (182)
384 1sxj_E Activator 1 40 kDa subu 88.9 0.29 9.8E-06 40.5 3.5 25 7-32 37-61 (354)
385 1sxj_B Activator 1 37 kDa subu 88.8 0.36 1.2E-05 39.0 4.0 29 7-36 43-71 (323)
386 3orf_A Dihydropteridine reduct 88.7 0.29 1E-05 38.5 3.3 34 4-42 20-53 (251)
387 4b4t_H 26S protease regulatory 88.7 0.32 1.1E-05 42.3 3.7 34 5-42 242-275 (467)
388 2chq_A Replication factor C sm 88.6 0.4 1.4E-05 38.7 4.1 29 7-36 39-67 (319)
389 1svi_A GTP-binding protein YSX 88.5 0.41 1.4E-05 35.6 3.9 22 6-28 23-44 (195)
390 2atv_A RERG, RAS-like estrogen 88.5 0.4 1.4E-05 35.8 3.9 86 116-209 75-167 (196)
391 3v8b_A Putative dehydrogenase, 88.5 0.33 1.1E-05 39.1 3.5 37 1-42 23-59 (283)
392 2iwr_A Centaurin gamma 1; ANK 88.5 0.34 1.2E-05 35.4 3.3 22 7-29 8-29 (178)
393 3m6a_A ATP-dependent protease 88.4 0.36 1.2E-05 42.9 4.0 26 6-32 108-133 (543)
394 3pvs_A Replication-associated 88.3 0.3 1E-05 42.3 3.3 24 7-31 51-74 (447)
395 1g41_A Heat shock protein HSLU 88.3 0.31 1E-05 42.2 3.3 33 6-42 50-82 (444)
396 3guy_A Short-chain dehydrogena 88.2 0.29 9.9E-06 37.9 2.9 32 6-42 1-32 (230)
397 3uce_A Dehydrogenase; rossmann 88.1 0.18 6.2E-06 38.9 1.6 37 1-42 1-37 (223)
398 3pxi_A Negative regulator of g 88.1 0.38 1.3E-05 44.5 4.1 27 6-33 201-227 (758)
399 1lw7_A Transcriptional regulat 88.0 0.31 1.1E-05 40.8 3.2 27 6-33 170-196 (365)
400 2oap_1 GSPE-2, type II secreti 88.0 0.21 7.1E-06 44.2 2.1 34 6-41 260-293 (511)
401 3con_A GTPase NRAS; structural 88.0 0.39 1.3E-05 35.6 3.5 21 8-29 23-43 (190)
402 2pt7_A CAG-ALFA; ATPase, prote 88.0 0.18 6E-06 41.9 1.6 34 6-40 171-204 (330)
403 2ce2_X GTPase HRAS; signaling 88.0 1.8 6E-05 30.6 6.9 20 8-28 5-24 (166)
404 3oes_A GTPase rhebl1; small GT 87.9 0.44 1.5E-05 35.8 3.7 88 116-209 71-164 (201)
405 3tpc_A Short chain alcohol deh 87.9 0.42 1.4E-05 37.7 3.7 36 2-42 3-38 (257)
406 1ky3_A GTP-binding protein YPT 87.9 0.45 1.5E-05 34.7 3.7 22 6-28 8-29 (182)
407 1a5t_A Delta prime, HOLB; zinc 87.8 0.5 1.7E-05 39.0 4.3 28 6-34 24-51 (334)
408 4e6p_A Probable sorbitol dehyd 87.8 0.43 1.5E-05 37.7 3.7 33 5-42 7-39 (259)
409 3pxx_A Carveol dehydrogenase; 87.8 0.45 1.5E-05 38.0 3.9 37 1-42 5-41 (287)
410 2r44_A Uncharacterized protein 87.7 0.17 5.9E-06 41.6 1.4 24 7-31 47-70 (331)
411 3un1_A Probable oxidoreductase 87.7 0.19 6.4E-06 40.0 1.5 35 3-42 25-59 (260)
412 2elf_A Protein translation elo 87.6 3 0.0001 35.0 9.0 65 116-186 59-124 (370)
413 3ioy_A Short-chain dehydrogena 87.6 0.6 2E-05 38.3 4.6 35 3-42 5-39 (319)
414 4b4t_I 26S protease regulatory 87.6 0.47 1.6E-05 40.9 4.0 33 6-42 216-248 (437)
415 2fn4_A P23, RAS-related protei 87.5 0.59 2E-05 34.0 4.2 88 116-209 56-149 (181)
416 3v2h_A D-beta-hydroxybutyrate 87.5 0.41 1.4E-05 38.5 3.5 34 4-42 23-56 (281)
417 2fv8_A H6, RHO-related GTP-bin 87.4 0.41 1.4E-05 36.2 3.3 21 7-28 26-46 (207)
418 2wsb_A Galactitol dehydrogenas 87.4 0.5 1.7E-05 36.9 3.9 32 6-42 11-42 (254)
419 3s55_A Putative short-chain de 87.3 0.47 1.6E-05 37.9 3.7 37 1-42 5-41 (281)
420 1z2a_A RAS-related protein RAB 87.3 0.48 1.6E-05 34.0 3.5 87 116-209 53-144 (168)
421 3vfd_A Spastin; ATPase, microt 87.3 0.42 1.4E-05 40.4 3.6 33 6-42 148-180 (389)
422 3gem_A Short chain dehydrogena 87.3 0.29 1E-05 38.9 2.4 35 3-42 24-58 (260)
423 3pk0_A Short-chain dehydrogena 87.2 0.39 1.3E-05 38.1 3.2 37 1-42 5-41 (262)
424 1nrj_B SR-beta, signal recogni 87.2 0.52 1.8E-05 35.8 3.8 23 6-29 12-34 (218)
425 3pqc_A Probable GTP-binding pr 87.1 0.56 1.9E-05 34.6 3.9 21 6-27 23-43 (195)
426 3ged_A Short-chain dehydrogena 87.1 0.44 1.5E-05 37.8 3.4 32 6-42 2-33 (247)
427 2wjg_A FEOB, ferrous iron tran 87.1 0.52 1.8E-05 34.7 3.7 21 7-28 8-28 (188)
428 3kta_A Chromosome segregation 87.1 0.48 1.6E-05 35.1 3.4 24 8-32 28-51 (182)
429 1p6x_A Thymidine kinase; P-loo 87.1 0.32 1.1E-05 40.5 2.6 37 6-44 7-44 (334)
430 3op4_A 3-oxoacyl-[acyl-carrier 87.0 0.45 1.5E-05 37.4 3.4 35 3-42 6-40 (248)
431 3k53_A Ferrous iron transport 87.0 0.5 1.7E-05 37.7 3.7 23 6-29 3-25 (271)
432 3co5_A Putative two-component 87.0 0.16 5.5E-06 36.4 0.7 24 7-31 28-51 (143)
433 3hu3_A Transitional endoplasmi 86.9 0.7 2.4E-05 40.5 4.8 33 6-42 238-270 (489)
434 2wji_A Ferrous iron transport 86.8 0.52 1.8E-05 34.2 3.4 21 7-28 4-24 (165)
435 1knx_A Probable HPR(Ser) kinas 86.8 0.74 2.5E-05 37.9 4.6 30 6-40 147-176 (312)
436 2onk_A Molybdate/tungstate ABC 86.8 0.51 1.8E-05 37.2 3.6 25 7-32 25-49 (240)
437 4fs3_A Enoyl-[acyl-carrier-pro 86.7 0.83 2.8E-05 36.1 4.8 37 1-42 1-39 (256)
438 2ged_A SR-beta, signal recogni 86.6 0.62 2.1E-05 34.5 3.9 21 7-28 49-69 (193)
439 1fjh_A 3alpha-hydroxysteroid d 86.6 0.47 1.6E-05 37.2 3.3 32 6-42 1-32 (257)
440 2rhc_B Actinorhodin polyketide 86.6 0.58 2E-05 37.4 3.9 33 5-42 21-53 (277)
441 3sfz_A APAF-1, apoptotic pepti 86.5 0.4 1.4E-05 46.3 3.4 28 4-32 145-172 (1249)
442 2v6i_A RNA helicase; membrane, 86.4 0.53 1.8E-05 40.4 3.8 37 7-44 3-40 (431)
443 3rih_A Short chain dehydrogena 86.4 0.45 1.5E-05 38.6 3.2 36 2-42 37-72 (293)
444 1r6b_X CLPA protein; AAA+, N-t 86.4 0.78 2.7E-05 42.3 5.1 28 6-34 207-234 (758)
445 3b6e_A Interferon-induced heli 86.3 0.52 1.8E-05 35.6 3.4 35 8-43 50-90 (216)
446 1u8z_A RAS-related protein RAL 86.3 0.58 2E-05 33.4 3.5 20 8-28 6-25 (168)
447 4da9_A Short-chain dehydrogena 86.3 0.63 2.2E-05 37.3 3.9 33 5-42 28-60 (280)
448 2j0v_A RAC-like GTP-binding pr 86.3 0.75 2.6E-05 34.7 4.2 22 6-28 9-30 (212)
449 4eso_A Putative oxidoreductase 86.2 0.6 2E-05 36.9 3.7 33 5-42 7-39 (255)
450 2ehd_A Oxidoreductase, oxidore 86.2 0.44 1.5E-05 36.8 2.9 34 4-42 3-36 (234)
451 3grp_A 3-oxoacyl-(acyl carrier 86.2 0.52 1.8E-05 37.5 3.4 37 1-42 22-58 (266)
452 3dii_A Short-chain dehydrogena 86.2 0.53 1.8E-05 36.9 3.4 32 6-42 2-33 (247)
453 1zmt_A Haloalcohol dehalogenas 86.1 0.51 1.8E-05 37.1 3.3 32 6-42 1-32 (254)
454 3tif_A Uncharacterized ABC tra 86.0 0.49 1.7E-05 37.1 3.1 26 6-32 31-56 (235)
455 2cxx_A Probable GTP-binding pr 86.0 0.54 1.8E-05 34.6 3.2 20 8-28 3-22 (190)
456 1u0j_A DNA replication protein 85.9 0.74 2.5E-05 37.0 4.1 29 6-35 104-132 (267)
457 3ppi_A 3-hydroxyacyl-COA dehyd 85.8 0.59 2E-05 37.3 3.5 33 5-42 29-61 (281)
458 1tf7_A KAIC; homohexamer, hexa 85.7 1 3.5E-05 39.7 5.3 36 6-42 39-75 (525)
459 1oix_A RAS-related protein RAB 85.7 0.66 2.3E-05 34.7 3.6 21 8-29 31-51 (191)
460 2dkn_A 3-alpha-hydroxysteroid 85.7 0.54 1.9E-05 36.5 3.2 32 6-42 1-32 (255)
461 1kao_A RAP2A; GTP-binding prot 85.7 0.67 2.3E-05 33.1 3.5 20 8-28 5-24 (167)
462 3sop_A Neuronal-specific septi 85.6 0.69 2.4E-05 37.1 3.9 25 8-33 4-28 (270)
463 2pcj_A ABC transporter, lipopr 85.6 0.5 1.7E-05 36.7 3.0 26 6-32 30-55 (224)
464 2cbz_A Multidrug resistance-as 85.6 0.53 1.8E-05 37.0 3.1 26 6-32 31-56 (237)
465 3d3w_A L-xylulose reductase; u 85.6 0.75 2.6E-05 35.7 4.0 36 2-42 3-38 (244)
466 2iut_A DNA translocase FTSK; n 85.5 0.82 2.8E-05 40.8 4.6 39 6-45 214-256 (574)
467 2erx_A GTP-binding protein DI- 85.5 0.63 2.2E-05 33.4 3.3 20 8-28 5-24 (172)
468 2qen_A Walker-type ATPase; unk 85.5 0.63 2.1E-05 38.0 3.7 30 7-42 32-61 (350)
469 3rkr_A Short chain oxidoreduct 85.5 0.56 1.9E-05 37.1 3.3 33 5-42 28-60 (262)
470 1rif_A DAR protein, DNA helica 85.5 1 3.5E-05 36.0 4.9 30 13-42 134-164 (282)
471 3l77_A Short-chain alcohol deh 85.5 0.64 2.2E-05 36.0 3.5 33 5-42 1-33 (235)
472 2fz4_A DNA repair protein RAD2 85.4 0.84 2.9E-05 35.7 4.2 31 9-43 111-141 (237)
473 3rd5_A Mypaa.01249.C; ssgcid, 85.4 0.75 2.6E-05 37.0 4.0 33 5-42 15-47 (291)
474 3m1a_A Putative dehydrogenase; 85.4 0.46 1.6E-05 37.9 2.7 34 4-42 3-36 (281)
475 1xhl_A Short-chain dehydrogena 85.3 0.5 1.7E-05 38.3 2.9 37 1-42 21-57 (297)
476 1mv5_A LMRA, multidrug resista 85.3 0.59 2E-05 36.8 3.3 34 6-40 28-61 (243)
477 3pgx_A Carveol dehydrogenase; 85.3 0.72 2.4E-05 36.9 3.8 33 5-42 14-46 (280)
478 1vt4_I APAF-1 related killer D 85.3 0.47 1.6E-05 45.7 3.1 36 6-42 150-188 (1221)
479 2am1_A SP protein, UDP-N-acety 85.3 0.38 1.3E-05 41.6 2.3 30 5-37 99-128 (454)
480 1z0f_A RAB14, member RAS oncog 85.3 0.75 2.6E-05 33.3 3.7 22 7-29 16-37 (179)
481 1g8p_A Magnesium-chelatase 38 85.3 0.27 9.2E-06 40.5 1.3 24 8-32 47-70 (350)
482 3qq5_A Small GTP-binding prote 85.3 2.8 9.6E-05 35.9 7.7 87 118-209 84-173 (423)
483 3sjy_A Translation initiation 85.3 3.5 0.00012 34.8 8.4 66 116-186 74-140 (403)
484 3uxy_A Short-chain dehydrogena 85.2 0.39 1.3E-05 38.3 2.2 34 4-42 26-59 (266)
485 3b85_A Phosphate starvation-in 85.2 0.52 1.8E-05 36.3 2.8 27 7-35 23-50 (208)
486 2ius_A DNA translocase FTSK; n 85.2 0.87 3E-05 40.2 4.5 39 6-45 167-209 (512)
487 1zbd_A Rabphilin-3A; G protein 85.1 0.75 2.6E-05 34.4 3.7 22 6-28 8-29 (203)
488 2ag5_A DHRS6, dehydrogenase/re 85.1 0.64 2.2E-05 36.3 3.4 37 1-42 1-37 (246)
489 2va8_A SSO2462, SKI2-type heli 85.1 1 3.6E-05 41.1 5.2 37 7-44 47-84 (715)
490 3rwb_A TPLDH, pyridoxal 4-dehy 85.1 0.73 2.5E-05 36.1 3.7 35 3-42 3-37 (247)
491 3i4f_A 3-oxoacyl-[acyl-carrier 85.1 0.49 1.7E-05 37.4 2.7 35 3-42 4-38 (264)
492 1zcb_A G alpha I/13; GTP-bindi 85.0 0.65 2.2E-05 39.0 3.6 23 5-28 32-54 (362)
493 2qu8_A Putative nucleolar GTP- 85.0 0.77 2.6E-05 35.3 3.8 22 6-28 29-50 (228)
494 1m2o_B GTP-binding protein SAR 85.0 0.75 2.6E-05 34.3 3.6 20 8-28 25-44 (190)
495 2ce7_A Cell division protein F 85.0 0.79 2.7E-05 40.0 4.2 24 7-31 50-73 (476)
496 2d2e_A SUFC protein; ABC-ATPas 85.0 0.64 2.2E-05 36.8 3.3 24 6-30 29-52 (250)
497 1b0u_A Histidine permease; ABC 84.9 0.6 2.1E-05 37.3 3.2 26 6-32 32-57 (262)
498 1ko7_A HPR kinase/phosphatase; 84.9 0.73 2.5E-05 37.9 3.7 29 6-39 144-172 (314)
499 3h1t_A Type I site-specific re 84.8 1.3 4.5E-05 39.4 5.7 35 8-43 200-243 (590)
500 1spx_A Short-chain reductase f 84.8 0.57 2E-05 37.3 3.0 37 1-42 1-37 (278)
No 1
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=100.00 E-value=6.3e-39 Score=258.14 Aligned_cols=214 Identities=25% Similarity=0.455 Sum_probs=184.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+||.|+|+|+.+|+|||++|++|+++|+++|++|.++||++++++..+ +++.+.|..+ ..++...++ +.++++.+
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~--~~~~~~D~~~--~~~~~~~~~-~~~~~~~~ 77 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFS--ELCEDVESIL--NAYKHKFTA-AEINLISF 77 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSS--SSBHHHHHHH--HHTTTSSCH-HHHCSEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCC--CCCChHHHHH--HhcCCCCCh-hhEEEEEE
Confidence 479999999999999999999999999999999999999999887654 4554456654 566765444 45678999
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHH
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNA 163 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~ 163 (233)
..|.+|+.++.+++.....+++.+.+++ ++++||+|||||++|+.+|+....+++++++.+++|+++|++.+.++++++
T Consensus 78 ~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~ 157 (228)
T 3of5_A 78 NQAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHT 157 (228)
T ss_dssp SSSSCHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHH
Confidence 9999999998888887788999999999 999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhhhcCC
Q psy14904 164 LLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDF 229 (233)
Q Consensus 164 ~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~~~~~ 229 (233)
..+++.+++.++++.|+|+|+++ ++...++.+.+.+++.+|+|++|+|| ...+++.|++.
T Consensus 158 ~~~~~~l~~~~~~i~GvIlN~~~-~~~~~~~~~~~~l~~~~g~pvLG~iP-----~~~~~~~~~~~ 217 (228)
T 3of5_A 158 LLTINELNRHNIKLAGWIANCND-SNIKYIDEQINTIEELSGYKCSAKIS-----RNADYLDFIDL 217 (228)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECC-TTCSCHHHHHHHHHHHHSCCCSEEEE-----SSCCHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEEECcC-CcchhhHHHHHHHHHhhCCCEEEECC-----CchHhhhhcCH
Confidence 99999999999999999999998 65444567888999989999999999 23445666554
No 2
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=100.00 E-value=3.4e-37 Score=247.11 Aligned_cols=220 Identities=35% Similarity=0.569 Sum_probs=176.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
|+|+|+|+|||+||||+|+|||.+|+++|+||+++||++++....+ .++.+.+..++....+..... ..+.++.+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~ 78 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTP--EGLRNSDALALQRNSSLQLDY-ATVNPYTFAE 78 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCT--TSCBCHHHHHHHHTCSSCCCH-HHHCSEEESS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCC--CCcChHHHHHHHHHhCCCCCh-hhcccEEeCC
Confidence 6899999999999999999999999999999999999987665332 344445666565555533221 2334555666
Q ss_pred CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS 166 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~ 166 (233)
|.+++++...++.....+++.+.+++++++|||||||||||+..|+......+++++.++.++++|+.++.++++++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~ 158 (224)
T 1byi_A 79 PTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLT 158 (224)
T ss_dssp CSCHHHHHHHHTCCCCHHHHHHHHHHHHTTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCCHHHHHHHHHHHHHhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHH
Confidence 66776655444444567899999999999999999999999987776557889999998889999999999899999999
Q ss_pred HHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCC-CCChhhhhhhcCCC
Q psy14904 167 LEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLY-NLNINLISHYLDFS 230 (233)
Q Consensus 167 ~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~-~l~~~~~~~~~~~~ 230 (233)
++.+++.+++++|+|+|+++ ++....++..+.+++.++.|+++.||+++ ..+..++++||+.+
T Consensus 159 i~~l~~~~~~i~gvvlN~~~-~~~~~~~~~~~~l~~~~~~~vl~~Ip~~~~~~~~~~~~~~~~~~ 222 (224)
T 1byi_A 159 AQVIQHAGLTLAGWVANDVT-PPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLA 222 (224)
T ss_dssp HHHHHHTTCCEEEEEEECCS-SCCTTHHHHHHHHHHHSSSCEEEEECCCTTCTTCCCCGGGCCGG
T ss_pred HHHHHHCCCcEEEEEEeCCC-CchhhHHHHHHHHHHHcCCCEEEECCCCcCCccHHHHHHHhccc
Confidence 99999999999999999998 65445567788888889999999999999 55555788888754
No 3
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=100.00 E-value=1.1e-35 Score=241.84 Aligned_cols=204 Identities=21% Similarity=0.320 Sum_probs=175.9
Q ss_pred CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceee
Q psy14904 2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINP 81 (233)
Q Consensus 2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 81 (233)
-.++|+.|+|+++.+|+|||++|++|+++|+++|++|.++||+++++...+ .|..+++..++... ..++
T Consensus 22 ~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~-------~D~~~~~~~~g~~~----~~~~ 90 (251)
T 3fgn_A 22 FQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGD-------DDLAEVGRLAGVTQ----LAGL 90 (251)
T ss_dssp CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTC-------CHHHHHHHHHCCCE----EEEE
T ss_pred cccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCC-------HHHHHHHHHcCCCC----CCCC
Confidence 346789999999999999999999999999999999999999998765321 47888888888642 3467
Q ss_pred eeecCCCChhhhhhhcCC-CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCC-CchHHHHHHhCCCEEEEEcCCCCc
Q psy14904 82 YLFKYPISPYTSSNLENR-IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDN-ENSADLAEKLGLPIILVIDLKIGC 159 (233)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~-~~~~~l~~~~~~~vllV~~~~~~~ 159 (233)
+.+..|.+|+.++..++. ..+.+.+.+.+++++++||+|||||++|+.+|+... .+++++++.+++|+|+|++.+.++
T Consensus 91 ~~~~~p~sP~~aa~~~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~ 170 (251)
T 3fgn_A 91 ARYPQPMAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGT 170 (251)
T ss_dssp EECSSSSCHHHHHHHTTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTH
T ss_pred eeECCCCChHHHHHHcCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCcc
Confidence 888889999998887776 678899999999999999999999999999887655 789999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCc-hhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVD-TLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~-~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
++++..+++.+++.++++.|+|+|++. .+ ...++.+.+.|++. +|++|+||+++...
T Consensus 171 i~~~~lt~~~l~~~g~~i~GvIlN~v~-~~~~~~~~~~~~~le~~--vpvLG~iP~~~~~l 228 (251)
T 3fgn_A 171 LNHTKLTLEALAAQQVSCAGLVIGSWP-DPPGLVAASNRSALARI--AMVRAALPAGAASL 228 (251)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCCHHHHHHHHHHHHH--SCEEEEEETTGGGC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCC-CchhhhhhhHHHHHHHh--CCEEEEeeCCCCcC
Confidence 999999999999999999999999996 32 22345677888876 99999999987443
No 4
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=100.00 E-value=2.8e-34 Score=232.29 Aligned_cols=205 Identities=25% Similarity=0.283 Sum_probs=170.2
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHH----HHHh-CCCccccc
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLL----NKYS-NSLYEFTK 77 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~----~~~~-~~~~~~~~ 77 (233)
++|+|.|+|+|+.+|+|||++|++|+++|+++|++|.++||+++++...+ + .+.|..++ ++.. +.+ + +
T Consensus 18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~---~-~~~D~~~~~~~~~~~~~g~~--~-~ 90 (242)
T 3qxc_A 18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAI---N-HSSDAHLFLQDNRLLDRSLT--L-K 90 (242)
T ss_dssp -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTT---C-CCSHHHHHHHHHHTTCTTCC--H-H
T ss_pred hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccC---C-CCchHHHHHHHHHHHhCCCC--h-H
Confidence 56789999999999999999999999999999999999999998876321 1 12477666 3333 432 2 4
Q ss_pred ceeeeeecCCCChhhhhhhcCC--CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904 78 LINPYLFKYPISPYTSSNLENR--IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL 155 (233)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~ 155 (233)
+++|+.+..|.+|+.++..++. ..+.+.+.+.+++++++||+|||||++|+.+|+....+++++++.+++|+|+|++.
T Consensus 91 ~~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~ 170 (242)
T 3qxc_A 91 DISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHD 170 (242)
T ss_dssp HHCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECC
T ss_pred HeeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcC
Confidence 6788999999999998887777 67889999999999999999999999999999887889999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhh---cCCCceEecCCCC
Q psy14904 156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKY---LNVTPLGRIPYLY 216 (233)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~---~~~pvlg~IP~~~ 216 (233)
+.++++++..+++.+++.+++ .|+|+|+++ +.....+.....+++. +..|+++++|+.+
T Consensus 171 ~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~-~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~~ 232 (242)
T 3qxc_A 171 NLGLINDCLLNDFLLKSHQLD-YKIAINLKG-NNTAFHSISLPYIELFNTRSNNPIVIFQQSLK 232 (242)
T ss_dssp STTHHHHHHHHHHHHHTSSSC-EEEEECCCT-TCCHHHHHTHHHHHHHHHHCSSCCEEGGGCHH
T ss_pred CCcHHHHHHHHHHHHHhCCCC-EEEEEeCCC-CccchhhhhHHHHHHhcCcccCCceeccccHH
Confidence 999999999999999999999 999999998 5443444445566654 3567777776653
No 5
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.95 E-value=5.9e-27 Score=218.85 Aligned_cols=203 Identities=23% Similarity=0.277 Sum_probs=162.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCeeeEEeeeecCcccCCCCCCccchHHHHHHH-H----------
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-----GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK-Y---------- 68 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-----G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~-~---------- 68 (233)
+++.|+|+++.+|+|||+++++|+++|+++ |++|.+|||++++++..+ +...+.+ +
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fKPv~~g~~~~~--------~~~~~~~~~~~~~~~n~da 104 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDS--------DSRFVFSKLDSLSLRRQIP 104 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEEEEECSTTTCC--------HHHHHHHHHHHHHHHHTCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEcccccCCCcCc--------chHHHHHhhccccccchhH
Confidence 578999999999999999999999999999 999999999998876532 2211111 1
Q ss_pred -----------------hCCCcc----------c-----------ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHH
Q psy14904 69 -----------------SNSLYE----------F-----------TKLINPYLFKYPISPYTSSNLENRIINTSHIINCY 110 (233)
Q Consensus 69 -----------------~~~~~~----------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (233)
.+++.+ + ....+++.+..|.+|++++.+++.....+.+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~sp~~aa~~~~~~~~~~~i~~~~ 184 (831)
T 4a0g_A 105 ISISNSVLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELLCKTLYAWEAAISPHLAAERENATVEDSVVLQMI 184 (831)
T ss_dssp CEEEEEEEEEEHHHHHHHTCCCCBCTTSEEEEEEEEEECCTTSCEEEEEEEEECSSSSCHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHcCCChhhHhhcccCCcccCCceEeecccccccccccccccccceeeecCCcCHHHHHHHcCCCCCHHHHHHHH
Confidence 111110 0 02346777888999999988888877888888888
Q ss_pred HH-hhc----------CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEE
Q psy14904 111 NY-LSN----------LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIG 179 (233)
Q Consensus 111 ~~-l~~----------~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~G 179 (233)
++ +.+ ++|++||||++|+.+|+....+++|+++.+++|||+|++.++++++++..+.+.++..++++.|
T Consensus 185 ~~~l~~~a~~~~~~~~~~D~vvVEGaGGl~~p~~~~~~~adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~G 264 (831)
T 4a0g_A 185 EKCLKEEMECGVKSEKSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAA 264 (831)
T ss_dssp HHHHHHHC---------CEEEEEECCSSTTCBCTTSCBHHHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHhhhhccccccccCCEEEEECCCCccCCCCCCccHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence 77 544 8999999999999999888889999999999999999999999999999999999989999999
Q ss_pred EEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCC
Q psy14904 180 WVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNL 218 (233)
Q Consensus 180 iVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l 218 (233)
+|+|+.. +. .++...+.+++..++|++|.+|+.+..
T Consensus 265 vI~N~~~-~~--~~~~l~~~l~~~~~v~vLg~lP~~~~~ 300 (831)
T 4a0g_A 265 VVFEDHG-LV--NEVPLTSYLRNKVPVLVLPPVPKDPSD 300 (831)
T ss_dssp EEEECCS-SC--THHHHHHHTTTSSCEEEECCCCCCTTC
T ss_pred EEEeCCc-hh--HHHHHHHHHHhCCCceeeCCCCCCCHH
Confidence 9999876 32 344556666666677778888886554
No 6
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.92 E-value=1e-23 Score=172.86 Aligned_cols=196 Identities=10% Similarity=0.036 Sum_probs=125.4
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCccc----ccc
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEF----TKL 78 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~----~~~ 78 (233)
.+++++|+|+|+|||+||||+|+|||.+|+++|+||+++| .+++.. . +...++..... .+.
T Consensus 15 ~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD---~D~~~~---------~---l~~~l~~~~~~~~~~~~~ 79 (262)
T 2ph1_A 15 GKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD---ADFLGP---------S---IPILFGLRNARIAVSAEG 79 (262)
T ss_dssp TTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE---CCSSCC---------H---HHHHTTCCSCCCEEETTE
T ss_pred ccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCCCC---------C---HHHHhcCCCccccccccC
Confidence 3467899999999999999999999999999999999999 333321 0 11122221100 011
Q ss_pred eeeee------ecCCCChhhhhhhcCC----CCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCC
Q psy14904 79 INPYL------FKYPISPYTSSNLENR----IINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGL 147 (233)
Q Consensus 79 ~~~~~------~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~ 147 (233)
+.+.. .-.|.++......+.. ....+.+.+.++.++ +.||||||||||++..+. ....+.....
T Consensus 80 ~~~~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~-----~~~~~~~~aD 154 (262)
T 2ph1_A 80 LEPVLTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP-----LTVMQDAKPT 154 (262)
T ss_dssp EECEECTTTCCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH-----HHHHHHHCCS
T ss_pred ccccccCCCCeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH-----HHHHhhccCC
Confidence 11111 0001111110000000 011245677777776 789999999998864321 1111211234
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCc-------hhh-hhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD-------TLF-ANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~-------~~~-~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
.+++|+.++..++..+...++.+++.+++++|+|+|+++ +. ... .....+.+++.+|.|+++.||++..+.
T Consensus 155 ~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~ 233 (262)
T 2ph1_A 155 GVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSY-FVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELI 233 (262)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCC-EECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHH
T ss_pred eEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCc-cCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHH
Confidence 688999999888888888888888889999999999986 31 111 133467777788999999999998663
No 7
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.92 E-value=1.5e-23 Score=168.88 Aligned_cols=198 Identities=17% Similarity=0.143 Sum_probs=125.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceee---
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINP--- 81 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~--- 81 (233)
|+++|+|+|+|||+||||+|+|||.+|+++|+||+++|...+...... ..++...... +..+........+.+.+
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~-~~~~~~~~~~-l~~~l~~~~~~~~~i~~~~~ 78 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSL-VLGVDDPDVT-LHDVLAGEANVEDAIYMTQF 78 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHH-HTTCCCCSSC-HHHHHTTSSCGGGGCEECSS
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhH-hcCCCCCCCC-HHHHhcCCCCHHHHhhcCCC
Confidence 468999999999999999999999999999999999993321110000 0011000000 11111111111011100
Q ss_pred ---eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC
Q psy14904 82 ---YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG 158 (233)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~ 158 (233)
..+..+..... ... ...+.+.+.++++++.||+||||||+++.. .... +......+++|+.++..
T Consensus 79 ~~l~~lp~~~~~~~-~~~----~~~~~l~~~l~~l~~~yD~viiD~~~~~~~------~~~~-~~~~ad~vi~v~~~~~~ 146 (237)
T 1g3q_A 79 DNVYVLPGAVDWEH-VLK----ADPRKLPEVIKSLKDKFDFILIDCPAGLQL------DAMS-AMLSGEEALLVTNPEIS 146 (237)
T ss_dssp TTEEEECCCCSHHH-HHH----CCGGGHHHHHHTTGGGCSEEEEECCSSSSH------HHHH-HHTTCSEEEEEECSCHH
T ss_pred CCEEEEeCCCccch-hhh----cCHHHHHHHHHHHHhcCCEEEEECCCCcCH------HHHH-HHHHCCeEEEEecCCcc
Confidence 01111111111 111 014678888999999999999999987642 1122 22333479999999888
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
++.++...++.+++.+.+..|+|+|+++ ++... ...+.+++.++.|+++.||+++.+.
T Consensus 147 ~~~~~~~~~~~l~~~~~~~~~vv~N~~~-~~~~~--~~~~~~~~~~~~~~~~~Ip~~~~~~ 204 (237)
T 1g3q_A 147 CLTDTMKVGIVLKKAGLAILGFVLNRYG-RSDRD--IPPEAAEDVMEVPLLAVIPEDPAIR 204 (237)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEET-SCTTC--CCHHHHHHHHCSCEEEEEECCHHHH
T ss_pred cHHHHHHHHHHHHhCCCceEEEEEecCC-cccch--hHHHHHHHHhCccceeeCCCChHHH
Confidence 8888888888888888899999999998 54322 4456667778999999999987654
No 8
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.92 E-value=2.9e-24 Score=175.26 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=123.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccchHHHHHHHHhCCCcccc------
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFNEDVNLLNKYSNSLYEFT------ 76 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~~d~~~~~~~~~~~~~~~------ 76 (233)
|+++|+|+|+|||+||||+|+|||.+|+++|+||+++| .+++.... ..++.......+...........
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD---~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~ 77 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID---FAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKD 77 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE---CCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEEC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE---CCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheecc
Confidence 47899999999999999999999999999999999999 33321100 00000000000011110000000
Q ss_pred ---cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhc-CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904 77 ---KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV 152 (233)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV 152 (233)
+++. .+ |.+.. .+......+.+.+.++.+++ .||+||||||+++.. ....+......+++|
T Consensus 78 ~~~~~l~--~l--p~~~~----~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~-------~~~~~l~~ad~vi~v 142 (260)
T 3q9l_A 78 KRTENLY--IL--PASQT----RDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET-------GALMALYFADEAIIT 142 (260)
T ss_dssp SSSTTEE--EE--CCCSC----CCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSH-------HHHHHHHTCSEEEEE
T ss_pred CCCCCEE--Ee--cCCCc----cchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCH-------HHHHHHHhCCEEEEE
Confidence 1111 11 11111 11223456789999999998 999999999987642 122223334578999
Q ss_pred EcCCCCcHHHHHHHHHHHHhCC--------CcEEEEEEcccCCCchhhhhhh--HHHHHhhcCCCceEecCCCCCCC
Q psy14904 153 IDLKIGCINNALLSLEAINSRG--------LKLIGWVANHTQIVDTLFANEN--YIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~--------~~i~GiVlN~~~~~~~~~~~~~--~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
+.++..++..+...++.+++.+ ....|+|+||++ ++....... .+.+++.++.|+++.||+++.+.
T Consensus 143 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~~~~~ 218 (260)
T 3q9l_A 143 TNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN-PGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL 218 (260)
T ss_dssp ECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEEC-HHHHHTTSSCCHHHHHHHHCSEEEEEEECCHHHH
T ss_pred ecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCC-ccccccccccCHHHHHHHhCCceEEecCCChhHH
Confidence 9998888888877888776443 247899999998 543322222 36777788999999999998654
No 9
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.91 E-value=2.5e-23 Score=163.93 Aligned_cols=167 Identities=10% Similarity=0.023 Sum_probs=118.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
||+|+|+|+|||+||||+|.|||.+|+++|+||+++| .+++.. .. .+.+... ..+.....
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD---~D~~~~---------~~----~~~~~~~---~~~~~~~~- 60 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD---TDPQMS---------LT----NWSKAGK---AAFDVFTA- 60 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE---CCTTCH---------HH----HHHTTSC---CSSEEEEC-
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE---CCCCCC---------HH----HHHhcCC---CCCcEEec-
Confidence 6899999999999999999999999999999999999 444321 11 1222111 11211111
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHH
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALL 165 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~ 165 (233)
..+.+.+.+++++++||+|||||||++.. ........ ...+++|+.++..+ ..+..
T Consensus 61 ----------------~~~~l~~~l~~l~~~yD~viiD~~~~~~~------~~~~~l~~-ad~viiv~~~~~~~-~~~~~ 116 (206)
T 4dzz_A 61 ----------------ASEKDVYGIRKDLADYDFAIVDGAGSLSV------ITSAAVMV-SDLVIIPVTPSPLD-FSAAG 116 (206)
T ss_dssp ----------------CSHHHHHTHHHHTTTSSEEEEECCSSSSH------HHHHHHHH-CSEEEEEECSCTTT-HHHHH
T ss_pred ----------------CcHHHHHHHHHhcCCCCEEEEECCCCCCH------HHHHHHHH-CCEEEEEecCCHHH-HHHHH
Confidence 11567888889999999999999988632 12222333 34688999998888 77777
Q ss_pred HHHHHHhC-----CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904 166 SLEAINSR-----GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-GRIPYLYNLN 219 (233)
Q Consensus 166 ~~~~l~~~-----~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~ 219 (233)
.++.+++. +.++ |+|+||++ ++....++..+.+++ ++.|++ +.||++..+.
T Consensus 117 ~~~~l~~~~~~~~~~~~-~vv~N~~~-~~~~~~~~~~~~l~~-~~~~vl~~~Ip~~~~~~ 173 (206)
T 4dzz_A 117 SVVTVLEAQAYSRKVEA-RFLITRKI-EMATMLNVLKESIKD-TGVKAFRTAITQRQVYV 173 (206)
T ss_dssp HHHHHHTTSCGGGCCEE-EEEECSBC-TTEEEEHHHHHHHHH-HTCCBCSSCCBCCHHHH
T ss_pred HHHHHHHHHHhCCCCcE-EEEEeccC-CCchHHHHHHHHHHH-cCCceeeccccccHHHH
Confidence 77777633 4676 99999998 654444556666665 689999 8899987553
No 10
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.91 E-value=7.2e-23 Score=167.49 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=123.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceee---
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINP--- 81 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~--- 81 (233)
|+++|+|+|+|||+||||+|+|||.+|+++|+||+++|.......... ..++...... +..+........+.+.+
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~-~l~~~~~~~~-l~~~l~~~~~~~~~i~~~~~ 78 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLEL-ILGMEGLPVT-LQNVLAGEARIDEAIYVGPG 78 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHH-HTTCCCCCCC-HHHHHTTSSCGGGGCEECGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcch-hcCCCCCCCC-HHHHHcCCCcHHHhheeCCC
Confidence 468999999999999999999999999999999999993321110000 0011000000 11111101111011100
Q ss_pred --eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc
Q psy14904 82 --YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC 159 (233)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~ 159 (233)
..+..+...... .. ...+.+.+.++.+++.||+||||||+++.. ....++.. ...+++|+.++..+
T Consensus 79 ~l~~lp~~~~~~~~-~~----~~~~~l~~~l~~l~~~yD~viiD~~~~~~~------~~~~~~~~-ad~vi~v~~~~~~~ 146 (263)
T 1hyq_A 79 GVKVVPAGVSLEGL-RK----ANPEKLEDVLTQIMESTDILLLDAPAGLER------SAVIAIAA-AQELLLVVNPEISS 146 (263)
T ss_dssp GCEEEECCSCHHHH-HH----HCHHHHHHHHHHHHHTCSEEEEECCSSSSH------HHHHHHHH-SSEEEEEECSSHHH
T ss_pred CeEEEcCCCCcChh-hc----cChHHHHHHHHHHHhhCCEEEEeCCCCCCh------HHHHHHHH-CCEEEEEeCCChhH
Confidence 011111111111 11 014678888888989999999999987642 12222333 34799999998878
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
+.++...++.+++.+.+..|+|+|+++ +.... ...+.+++.++.|+++.||+++.+.
T Consensus 147 ~~~~~~~~~~l~~~~~~~~~vv~N~~~-~~~~~--~~~~~~~~~~~~~~~~~Ip~~~~~~ 203 (263)
T 1hyq_A 147 ITDGLKTKIVAERLGTKVLGVVVNRIT-TLGIE--MAKNEIEAILEAKVIGLIPEDPEVR 203 (263)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEEEEC-TTTHH--HHHHHHHHHTTSCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEccCC-ccccc--chHHHHHHHhCCCeEEECCCCHHHH
Confidence 888877888887778899999999998 54322 4566677778999999999987553
No 11
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.91 E-value=2.9e-23 Score=167.92 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=123.6
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCC---CCCCccc--hHHHHHHHHhCCCccc--
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNN---KNKIWFN--EDVNLLNKYSNSLYEF-- 75 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~---~~~~l~~--~d~~~~~~~~~~~~~~-- 75 (233)
+++++|+|+|.|||+||||+|+|||.+|+++ |+||+++| .+++... ...+... .-..++.....+....
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD---~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 78 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD---ISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLD 78 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE---CCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHH
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE---CCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHH
Confidence 4689999999999999999999999999999 99999999 3333100 0000000 0111121111111000
Q ss_pred ------ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCE
Q psy14904 76 ------TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPI 149 (233)
Q Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~v 149 (233)
.+++. .+ |......... ....+.+.+.++.+++.||+||||||+++.. ....+.. ....+
T Consensus 79 ~~~~~~~~~l~--~l--~~~~~~~~~~---~~~~~~l~~~l~~l~~~yD~viiD~p~~~~~------~~~~~l~-~ad~v 144 (245)
T 3ea0_A 79 TMVQHISPSLD--LI--PSPATFEKIV---NIEPERVSDLIHIAASFYDYIIVDFGASIDH------VGVWVLE-HLDEL 144 (245)
T ss_dssp HHSEEEETTEE--EE--CCCSSHHHHH---HCCHHHHHHHHHHHHHHCSEEEEEEESSCCT------THHHHGG-GCSEE
T ss_pred HHhEecCCCeE--EE--cCCCChHhhh---cCCHHHHHHHHHHHHhhCCEEEEeCCCCCch------HHHHHHH-HCCEE
Confidence 01111 11 2222221110 1345788999999999999999999988642 1122222 23468
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhCC--CcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904 150 ILVIDLKIGCINNALLSLEAINSRG--LKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLY 216 (233)
Q Consensus 150 llV~~~~~~~~~~~~~~~~~l~~~~--~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~ 216 (233)
++|+.++..++..+...++.+++.+ .+..|+|+||++ ++... ..+.+++.+|.|+++.||++.
T Consensus 145 iiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~-~~~~~---~~~~~~~~~~~~v~~~ip~~~ 209 (245)
T 3ea0_A 145 CIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRAD-TNSRI---TSDEIEKVIGRPISKRIPQDE 209 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTT-SCTTS---CHHHHHHHHTSCEEEEECCCH
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCC-CCCCC---CHHHHHHHhCCCeEEECCCCh
Confidence 9999998878888888888887655 677999999998 54322 236777788999999999986
No 12
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.91 E-value=1.1e-23 Score=172.10 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=117.8
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCccchHHHHHHHHhCCCcccccce
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWFNEDVNLLNKYSNSLYEFTKLI 79 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~ 79 (233)
|..+++++|+|+|+|||+||||+|+|||.+|+++|+||+++| .+++..- ...++.. +..+.....+. +..+.+
T Consensus 1 m~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD---~D~~~~~~~~l~~~~-~~~l~~~l~~~--~~~~~i 74 (257)
T 1wcv_1 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD---LDPQGNATSGLGVRA-ERGVYHLLQGE--PLEGLV 74 (257)
T ss_dssp ----CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE---CCTTCHHHHHTTCCC-SCCHHHHHTTC--CGGGTC
T ss_pred CCCCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE---CCCCcCHHHHhCCCC-CCCHHHHHcCC--CHHHHc
Confidence 788899999999999999999999999999999999999998 3332100 0000000 00000000111 110111
Q ss_pred ee--eeecCCCChhhhh---hhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904 80 NP--YLFKYPISPYTSS---NLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID 154 (233)
Q Consensus 80 ~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~ 154 (233)
.+ ...-.|.++.+.. ..... .+.+.+.+++ ++||+|||||||++... ....... ...+++|+.
T Consensus 75 ~~~~~l~vlp~~~~~~~~~~~l~~~---~~~l~~~l~~--~~yD~iiiD~pp~~~~~------~~~~l~~-aD~viiv~~ 142 (257)
T 1wcv_1 75 HPVDGFHLLPATPDLVGATVELAGA---PTALREALRD--EGYDLVLLDAPPSLSPL------TLNALAA-AEGVVVPVQ 142 (257)
T ss_dssp EEETTEEEECCCTTHHHHHHHHTTC---TTHHHHHCCC--TTCSEEEEECCSSCCHH------HHHHHHH-CSEEEEEEE
T ss_pred cccCCEEEEeCChhHHHHHHHHhhH---HHHHHHHhcc--cCCCEEEEeCCCCCCHH------HHHHHHH-CCeEEEEec
Confidence 10 0011122222211 11010 0456666655 78999999999886421 1222222 347899999
Q ss_pred CCCCcHHHHHHHHHHH---H---hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904 155 LKIGCINNALLSLEAI---N---SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-GRIPYLYNLN 219 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~l---~---~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~ 219 (233)
++..++..+...++.+ + +.+++++|+|+|+++ ++....++..+.+++.++.+++ +.||++..+.
T Consensus 143 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~-~~~~~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~ 213 (257)
T 1wcv_1 143 AEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYD-GRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLA 213 (257)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC-TTCSHHHHHHHHHHHHHGGGBCSCCCBCCHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC-CCcHHHHHHHHHHHHHccccccCccCCCcHHHH
Confidence 9877766544444443 3 357888999999998 5544455677888888888887 7899987553
No 13
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.90 E-value=7e-23 Score=168.05 Aligned_cols=203 Identities=12% Similarity=-0.032 Sum_probs=117.4
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CC------CCccchHHHHHHHHhCCC
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KN------KIWFNEDVNLLNKYSNSL 72 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~------~~l~~~d~~~~~~~~~~~ 72 (233)
|..+++++|+|+|.|||+||||+|+|||.+|+ +|+||+++| .+++... .. .++...... +.......
T Consensus 22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD---~D~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~ 96 (267)
T 3k9g_A 22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID---MDTQASITSYFYEKIEKLGINFTKFN-IYEILKEN 96 (267)
T ss_dssp ----CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE---ECTTCHHHHHTHHHHHHTTCCTTTSS-HHHHHTTS
T ss_pred CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE---CCCCCCHHHHhhccccccccCccccc-HHHHhcCC
Confidence 44567899999999999999999999999999 999999999 3333210 00 000000000 01111101
Q ss_pred cccccceeee---eecCCCChhhhhh-hcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCC
Q psy14904 73 YEFTKLINPY---LFKYPISPYTSSN-LENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLP 148 (233)
Q Consensus 73 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~ 148 (233)
....+.+... ..-.|.+..+... ..........+.+.++.+++.||+||||||+++... ...... ....
T Consensus 97 ~~~~~~i~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~pp~~~~~------~~~~l~-~aD~ 169 (267)
T 3k9g_A 97 VDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVT------LKNALL-CSDY 169 (267)
T ss_dssp SCGGGGCEEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTCTTCSEEEEEECSSCSHH------HHHHHT-TCSE
T ss_pred CCHHHhhccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhhcCCCEEEEECcCCccHH------HHHHHH-HCCe
Confidence 1110111110 0111222222110 001112356789999999999999999999876321 111112 2346
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhC--CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904 149 IILVIDLKIGCINNALLSLEAINSR--GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI 220 (233)
Q Consensus 149 vllV~~~~~~~~~~~~~~~~~l~~~--~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~ 220 (233)
+++|+.++..++..+...++.+++. +.+ +++|+||+. . ....++..+.+++ +.++++.||+++.+..
T Consensus 170 vivv~~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~-~-~~~~~~~~~~l~~--~~~~~~~Ip~~~~~~~ 238 (267)
T 3k9g_A 170 VIIPMTAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFK-K-NRTHKTLFEILKT--KDRFLGTISEREDLNR 238 (267)
T ss_dssp EEEEEESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEEC-T-TCSCCHHHHHHTT--STTEEEEEEC------
T ss_pred EEEEeCCChHHHHHHHHHHHHHHHHhccCC-EEEEEeccc-C-cchHHHHHHHHhc--CcccceecCcHHHHHH
Confidence 8999999888888777777777755 345 469999996 3 2334566677765 7899999999998773
No 14
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.89 E-value=1.3e-21 Score=160.98 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=108.9
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccc--hHHHHHHHHhCCCcccc----
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFN--EDVNLLNKYSNSLYEFT---- 76 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~--~d~~~~~~~~~~~~~~~---- 76 (233)
.+++++|+|+|+|||+||||+|+|||.+|++.|+||+++|.....+.... ..++.+ .-..++ .+ ...+.
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~-~~~~~~~~gl~~~L---~~-~~~l~~~i~ 153 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHY-IFNLPNNEGLSSLL---LN-WSTYQDSII 153 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHH-HTTCCCSSSHHHHH---TT-SSCHHHHEE
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHH-HcCCCCCCCHHHHh---CC-CCCHHHcEE
Confidence 45789999999999999999999999999999999999993221111000 000000 001111 11 00110
Q ss_pred ----cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904 77 ----KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV 152 (233)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV 152 (233)
+++.- ....+..++... + ...+++.+.++++++.||+|||||||.+.. .....++...+ .+++|
T Consensus 154 ~~~~~~l~v-l~~g~~~~~~~e-l----l~~~~l~~ll~~l~~~yD~VIIDtpp~~~~-----~d~~~l~~~aD-~vilV 221 (271)
T 3bfv_A 154 STEIEDLDV-LTSGPIPPNPSE-L----ITSRAFANLYDTLLMNYNFVIIDTPPVNTV-----TDAQLFSKFTG-NVVYV 221 (271)
T ss_dssp ECSSTTEEE-ECCCSCCSCHHH-H----HTSHHHHHHHHHHHHHCSEEEEECCCTTTC-----SHHHHHHHHHC-EEEEE
T ss_pred eCCCCCEEE-EECCCCCCCHHH-H----hChHHHHHHHHHHHhCCCEEEEeCCCCchH-----HHHHHHHHHCC-EEEEE
Confidence 11211 111111122211 1 123678889999999999999999976532 12233444444 79999
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 153 IDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+.++..+...+...++.+++.+.+++|+|+|+++
T Consensus 222 v~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 222 VNSENNNKDEVKKGKELIEATGAKLLGVVLNRMP 255 (271)
T ss_dssp EETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred EeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 9999999999999999999899999999999998
No 15
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.89 E-value=8.5e-22 Score=163.30 Aligned_cols=171 Identities=13% Similarity=0.144 Sum_probs=111.9
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccc--hHHHHHHHHhCCCccc-
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFN--EDVNLLNKYSNSLYEF- 75 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~--~d~~~~~~~~~~~~~~- 75 (233)
|..++.++|+|+|.|||+||||+|+|||..|++.|+||+++| .++..... .-++.+ .-..++.....+...+
T Consensus 87 ~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID---~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~ 163 (286)
T 3la6_A 87 MMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID---CDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAK 163 (286)
T ss_dssp STTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE---CCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCE
T ss_pred ccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---ccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHhee
Confidence 345678999999999999999999999999999999999999 33321100 000000 0111121111111100
Q ss_pred ---ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904 76 ---TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV 152 (233)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV 152 (233)
..++.. ....+..++... + +..+++.+.++++++.||+|||||||.+.. ..+..+......+++|
T Consensus 164 ~~~~~~l~v-l~~g~~~~~~~e-l----l~~~~l~~ll~~l~~~yD~VIIDtpp~~~~------~da~~l~~~aD~vllV 231 (286)
T 3la6_A 164 PTSIAKFDL-IPRGQVPPNPSE-L----LMSERFAELVNWASKNYDLVLIDTPPILAV------TDAAIVGRHVGTTLMV 231 (286)
T ss_dssp ECSSTTEEE-ECCCSCCSCHHH-H----HTSHHHHHHHHHHHHHCSEEEEECCCTTTC------THHHHHTTTCSEEEEE
T ss_pred ccCCCCEEE-EeCCCCCCCHHH-H----hchHHHHHHHHHHHhCCCEEEEcCCCCcch------HHHHHHHHHCCeEEEE
Confidence 011111 111111112211 1 234788999999999999999999977532 2333344444579999
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 153 IDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+.++..+...+...++.+++.+.+++|+|+|+++
T Consensus 232 v~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 232 ARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIF 265 (286)
T ss_dssp EETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred EeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcc
Confidence 9999999999989999999999999999999998
No 16
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.88 E-value=1.2e-21 Score=163.38 Aligned_cols=168 Identities=16% Similarity=0.213 Sum_probs=109.8
Q ss_pred CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccchHHHHHHHHhCCCcccc---
Q psy14904 2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFNEDVNLLNKYSNSLYEFT--- 76 (233)
Q Consensus 2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~~d~~~~~~~~~~~~~~~--- 76 (233)
..+++++|+|+|+|||+||||+|+|||.+|++.|+||+++| .++..... .-++.+.. . +........+..
T Consensus 100 ~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID---~D~r~~~l~~~~~~~~~~-g-l~~~L~~~~~l~~~i 174 (299)
T 3cio_A 100 METENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID---ADLRRGYSHNLFTVSNEH-G-LSEYLAGKDELNKVI 174 (299)
T ss_dssp SSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE---CCTTTCCHHHHTTCCCSS-S-HHHHHTTSSCHHHHC
T ss_pred cCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE---CCCCCccHHHHcCCCCCC-C-HHHHCcCCCCHHHhh
Confidence 34568999999999999999999999999999999999999 33321000 00000000 0 011110000110
Q ss_pred -----cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904 77 -----KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL 151 (233)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll 151 (233)
+++.- ....+..++.. ++ +..+++.+.++++++.||+|||||||.+.. ..+.++......+++
T Consensus 175 ~~~~~~~l~v-l~~g~~~~~~~-el----l~~~~l~~ll~~l~~~yD~VIIDtpp~~~~------~d~~~l~~~ad~vil 242 (299)
T 3cio_A 175 QHFGKGGFDV-ITRGQVPPNPS-EL----LMRDRMRQLLEWANDHYDLVIVDTPPMLAV------SDAAVVGRSVGTSLL 242 (299)
T ss_dssp EEETTTTEEE-ECCCSCCSCHH-HH----HTSHHHHHHHHHHHHHCSEEEEECCCTTTC------THHHHHGGGCSEEEE
T ss_pred hccCCCCEEE-EECCCCCCCHH-HH----hCHHHHHHHHHHHHhCCCEEEEcCCCCchh------HHHHHHHHHCCEEEE
Confidence 11211 11111111111 11 134678899999999999999999987532 234444444567999
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 152 VIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 152 V~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
|+.++..+..++...++.+++.+.+++|+|+|+++
T Consensus 243 V~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~ 277 (299)
T 3cio_A 243 VARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVI 277 (299)
T ss_dssp EEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECC
T ss_pred EEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCc
Confidence 99999888888888999999899999999999998
No 17
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.88 E-value=1.1e-21 Score=163.44 Aligned_cols=205 Identities=15% Similarity=0.056 Sum_probs=120.3
Q ss_pred CceeEEEEe--CCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcc--cCCCCCCcc--chH-HHHHHHHhCCCccccc
Q psy14904 5 NFLHYFITG--TNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY--LNNKNKIWF--NED-VNLLNKYSNSLYEFTK 77 (233)
Q Consensus 5 ~~~~i~i~~--~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~--~~~~~~~l~--~~d-~~~~~~~~~~~~~~~~ 77 (233)
+.++|+|+| .|||+||||+|+|||.+|+++|+||+++|...++.. ......+.. ... ...+... .....+ .
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~-~~~~~~-~ 110 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNG-NLASSI-V 110 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHT-CCGGGC-E
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcC-Chhhhh-c
Confidence 356899999 899999999999999999999999999983222110 000000000 000 1111110 110000 0
Q ss_pred ceeeeeecCCCChhhhh--hhcCC-C--CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904 78 LINPYLFKYPISPYTSS--NLENR-I--INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV 152 (233)
Q Consensus 78 ~~~~~~~~~~~~~~~~~--~~~~~-~--~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV 152 (233)
...+...-.|.+..+.. ..... . ...+.+.+.++.+++.||+|||||||++... ....+. . ...+++|
T Consensus 111 ~~~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~~~yD~IiiD~pp~~~~~-----~~~~l~-~-aD~viiv 183 (298)
T 2oze_A 111 HLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVY-----TNNAIV-A-SDYVMIP 183 (298)
T ss_dssp ESSSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGGGGCSEEEEEECSSCSHH-----HHHHHH-H-CSEEEEE
T ss_pred ccCCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHhcCCCEEEEECCCCccHH-----HHHHHH-H-CCeEEEE
Confidence 00000111122332221 11000 0 0124588888889999999999999886421 122232 2 3468899
Q ss_pred EcCCCCcHHHHHHHHHHHH------hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCC--Cce-EecCCCCCCC
Q psy14904 153 IDLKIGCINNALLSLEAIN------SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNV--TPL-GRIPYLYNLN 219 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~------~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~--pvl-g~IP~~~~l~ 219 (233)
+.++..++..+...++.++ +.+++++|+|+|+++ ++.....+..+.+.+.++. +++ +.||++..+.
T Consensus 184 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~ 258 (298)
T 2oze_A 184 LQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVD-TDSATIKSNLEELYKQHKEDNLVFQNIIKRSNKVS 258 (298)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESC-TTCHHHHHHHHHHHHHTTTTCCBCSSCEECCHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEEC-CCcHHHHHHHHHHHHHhccccccccccccccHHHH
Confidence 9988877776655555554 258899999999998 5544445667777777775 777 5788876543
No 18
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.87 E-value=2.6e-21 Score=161.86 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=115.1
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCc----cchHHHHHHHHhCC--Cccc-
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIW----FNEDVNLLNKYSNS--LYEF- 75 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l----~~~d~~~~~~~~~~--~~~~- 75 (233)
.+++++|+|+ .|||+||||+|+|||.+|+++|+||+++| .+++.... ..+ ...-..++...... ....
T Consensus 38 ~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD---~D~~~~~~-~~l~~~~~~~l~d~l~~~~~~~~~~~~~ 112 (307)
T 3end_A 38 ITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIG---CDPKHDST-FTLTGSLVPTVIDVLKDVDFHPEELRPE 112 (307)
T ss_dssp --CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE---ESSSCCTT-HHHHTSCCCCHHHHHHHTTSCGGGCCHH
T ss_pred cCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEe---CCCCCCHH-HHhCccCCCCHHHHHhhccccccCCCHH
Confidence 3468999999 79999999999999999999999999999 33332100 000 00011112110000 0000
Q ss_pred ------ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHH--hhcCCCeEEEeccCcccCccCCCCchHHHHHHhCC
Q psy14904 76 ------TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNY--LSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGL 147 (233)
Q Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~ 147 (233)
..++....... ... .............+.+++ +++.|||||||||+++..+.. ...+ ....
T Consensus 113 ~~i~~~~~~l~vlp~~~----~~~-~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-----~~~l-~~aD 181 (307)
T 3end_A 113 DFVFEGFNGVMCVEAGG----PPA-GTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-----AAPL-QHAD 181 (307)
T ss_dssp HHCEECGGGCEEEECCC----CCS-SSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-----GGGG-GTCS
T ss_pred HhhccCCCCceEEECCC----ccc-ccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHHH-----HHHH-HHCC
Confidence 01111111100 000 000000112334455555 678999999999987643211 1111 1223
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINS----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
.+++|+.++..++..+...++.+++ .+++++|+|+||++ ++ ...+.+.+.++.|+++.||+++.+.
T Consensus 182 ~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~-~~-----~~~~~~~~~~g~~v~~~Ip~~~~v~ 251 (307)
T 3end_A 182 QAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSR-AT-----DEVDRFCKETNFRRLAHMPDLDAIR 251 (307)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCS-CC-----HHHHHHHHHHTCCEEEEECCCHHHH
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCC-cH-----HHHHHHHHHcCCCceeeCCccHHHH
Confidence 6899999988777777777777763 67889999999998 43 2355566677999999999987654
No 19
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.87 E-value=2e-21 Score=161.23 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=110.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-chH-HHHHHHHhCC-Cccc-----
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-NED-VNLLNKYSNS-LYEF----- 75 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~~d-~~~~~~~~~~-~~~~----- 75 (233)
|++|+|+ +|||+||||+|+|||.+|+++|+||+++| .+++.... ..+.. ... ..++...... ....
T Consensus 2 MkvIavs-~KGGvGKTT~a~nLA~~La~~G~rVlliD---~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~ 77 (289)
T 2afh_E 2 MRQCAIY-GKGGIGKSTTTQNLVAALAEMGKKVMIVG---CDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLK 77 (289)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEE---ECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCE
T ss_pred ceEEEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEe---cCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhc
Confidence 6899995 69999999999999999999999999998 33332110 00000 000 0111110000 0000
Q ss_pred --ccceeeeeecCCCChhhhhhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904 76 --TKLINPYLFKYPISPYTSSNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV 152 (233)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV 152 (233)
..++.......+ .+.... .... .....+.+.++.++++|||||||||+.+.. ..+ .+.+.......+++|
T Consensus 78 ~~~~~l~~l~~~~~-~~~~~~--~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~---~~~-~~~~~~~~aD~viiv 150 (289)
T 2afh_E 78 AGYGGVKCVESGGP-EPGVGC--AGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVC---GGF-AMPIRENKAQEIYIV 150 (289)
T ss_dssp ECGGGCEEEECCCC-CTTTCC--HHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCC---TTT-THHHHTTCCCEEEEE
T ss_pred cCCCCeEEEeCCCc-cccccc--cchhhhHHHHHHHHHHhhccCCCEEEEeCCCcccc---chh-hhhhhhhhCCEEEEE
Confidence 011111110000 000000 0000 000123333444567899999999876431 111 122222233468899
Q ss_pred EcCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 153 IDLKIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
+.++..++..+...++.++ +.+.++.|+|+|+++ .. ...+..+.+++.++.++++.||++..+.
T Consensus 151 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~-~~--~~~~~~~~l~~~~g~~~l~~Ip~~~~~~ 218 (289)
T 2afh_E 151 CSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRN-TD--REDELIIALANKLGTQMIHFVPRDNVVQ 218 (289)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCC-CT--THHHHHHHHHHHHTSCEEEEECCCHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCC-ch--hHHHHHHHHHHHcCccccccCCCchhHH
Confidence 9988777665554444443 247888999999997 42 2345677777778999999999987654
No 20
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.87 E-value=8e-21 Score=150.59 Aligned_cols=161 Identities=9% Similarity=0.044 Sum_probs=111.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY 86 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (233)
++|+|+|+|||+||||+|.|||.+|+++| ||+++| .+++.. ...++.. . + +....+.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD---~D~q~~---------~~~~~~~--~------~-l~~~vi~- 57 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID---GDPNRS---------ATGWGKR--G------S-LPFKVVD- 57 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE---ECTTCH---------HHHHHHH--S------C-CSSEEEE-
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE---CCCCCC---------HHHHhcC--C------C-CCcceeC-
Confidence 47999999999999999999999999999 999999 444421 1222222 1 1 1000010
Q ss_pred CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS 166 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~ 166 (233)
.+ .++++++.||+|||||||++..+ ........ ..-+++++.++..++..+...
T Consensus 58 ----------------~~----~l~~l~~~yD~viiD~p~~~~~~-----~~~~~l~~-aD~viiv~~~~~~~~~~~~~~ 111 (209)
T 3cwq_A 58 ----------------ER----QAAKYAPKYQNIVIDTQARPEDE-----DLEALADG-CDLLVIPSTPDALALDALMLT 111 (209)
T ss_dssp ----------------GG----GHHHHGGGCSEEEEEEECCCSSS-----HHHHHHHT-SSEEEEEECSSHHHHHHHHHH
T ss_pred ----------------HH----HHHHhhhcCCEEEEeCCCCcCcH-----HHHHHHHH-CCEEEEEecCCchhHHHHHHH
Confidence 01 34566789999999999883221 11222222 346888899888788877777
Q ss_pred HHHHHh-CCCcEEEEEEcccCCCch-hhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904 167 LEAINS-RGLKLIGWVANHTQIVDT-LFANENYIELTKYLNVTPL-GRIPYLYNLN 219 (233)
Q Consensus 167 ~~~l~~-~~~~i~GiVlN~~~~~~~-~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~ 219 (233)
++.+++ .+.+ .|+|+||++ ++. ...++..+.+++ +|.|++ +.||+++.+.
T Consensus 112 ~~~l~~~~~~~-~~vv~N~~~-~~~~~~~~~~~~~l~~-~g~~v~~~~Ip~~~~~~ 164 (209)
T 3cwq_A 112 IETLQKLGNNR-FRILLTIIP-PYPSKDGDEARQLLTT-AGLPLFKRGIKRYSAFQ 164 (209)
T ss_dssp HHHHHHTCSSS-EEEEECSBC-CTTSCHHHHHHHHHHH-TTCCBCSSCCBCCTHHH
T ss_pred HHHHHhccCCC-EEEEEEecC-CccchHHHHHHHHHHH-cCCchhhccCCCcHHHH
Confidence 887776 3667 899999998 554 444566677776 799999 7899987544
No 21
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.86 E-value=1.6e-21 Score=160.00 Aligned_cols=199 Identities=15% Similarity=0.084 Sum_probs=112.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-c-hHHHHHHHHh---CCC----cc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-N-EDVNLLNKYS---NSL----YE 74 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~-~d~~~~~~~~---~~~----~~ 74 (233)
|++|+| +.|||+||||+|+|||.+|+++|+||+++| .+++.... ..+.. . .-..++.... .+. ..
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD---~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~ 76 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVG---CDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEG 76 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEE---ECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEEC
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEc---CCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccC
Confidence 588999 469999999999999999999999999998 33332110 00000 0 0011121110 000 00
Q ss_pred cccceeeeeecCCCChhhhhhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904 75 FTKLINPYLFKYPISPYTSSNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI 153 (233)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~ 153 (233)
. .++.-.....+. +... ..... .....+.+.+++++++|||||||||+++.. .. ..+.++......+++|+
T Consensus 77 ~-~~l~vl~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~---~~-~~~~~~~~~aD~viiv~ 148 (269)
T 1cp2_A 77 Y-GGIRCVESGGPE-PGVG--CAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVC---GG-FAMPIREGKAQEIYIVA 148 (269)
T ss_dssp G-GGCEEEECCCCC-TTSS--CHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCS---TT-TTHHHHTTSCCEEEEEE
T ss_pred C-CCeeEEeCCCch-hhcc--ccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhh---hh-hhhhhhHhhCCEEEEee
Confidence 0 111111111000 0000 00000 001123344455567899999999876532 11 12223222345789999
Q ss_pred cCCCCcHHHHHHHHHHHHh----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 154 DLKIGCINNALLSLEAINS----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
.++..++..+...++.+++ .+++++|+|+|+++ +. ...+..+.+++.+|.++++.||++..+.
T Consensus 149 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~-~~--~~~~~~~~l~~~~~~~v~~~Ip~~~~~~ 215 (269)
T 1cp2_A 149 SGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRK-VA--NEYELLDAFAKELGSQLIHFVPRSPMVT 215 (269)
T ss_dssp CSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCS-SS--CCHHHHHHHHHHHTCCEEEEECCCHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCC-cc--hhHHHHHHHHHHcCCcccccCCCCcHHH
Confidence 9987777666555555542 36788999999997 42 2345677787788999999999997554
No 22
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.86 E-value=2.1e-21 Score=157.18 Aligned_cols=194 Identities=15% Similarity=0.082 Sum_probs=113.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCccchH----------HHHHHHHhCCCccc--
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWFNED----------VNLLNKYSNSLYEF-- 75 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~~~d----------~~~~~~~~~~~~~~-- 75 (233)
|+| |.|||+||||+|+|||.+|+++|+||+++| .+++..- ..-++.... ...+........-+
T Consensus 3 I~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD---~D~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T 3kjh_A 3 LAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVD---GDPDSCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLIL 78 (254)
T ss_dssp EEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEE---ECTTSCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCS
T ss_pred EEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCCcChHHHhCCCcccccccccchhHHHHHHhhccCCccccc
Confidence 788 679999999999999999999999999999 3333100 000111000 01111111000000
Q ss_pred ccceeeeeec---CCCChh--hhhh---hcCCCC-CH--HHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHHHH
Q psy14904 76 TKLINPYLFK---YPISPY--TSSN---LENRII-NT--SHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADLAE 143 (233)
Q Consensus 76 ~~~~~~~~~~---~~~~~~--~~~~---~~~~~~-~~--~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l~~ 143 (233)
..++...... .+.... +... ...... .. ..+.+.++++ ++.||+|||||||++.. .... ..
T Consensus 79 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~-----~~~~-~l- 151 (254)
T 3kjh_A 79 NPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEH-----LTRG-TA- 151 (254)
T ss_dssp SCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTT-----CCHH-HH-
T ss_pred CCchhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccH-----HHHH-HH-
Confidence 0000000000 000000 0000 000011 11 4589999998 89999999999988643 1122 22
Q ss_pred HhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcC-CCceEecCCCCCCC
Q psy14904 144 KLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLN-VTPLGRIPYLYNLN 219 (233)
Q Consensus 144 ~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~-~pvlg~IP~~~~l~ 219 (233)
.....+++|+.++..++..+....+.+++.+.+.+|+|+||++ ++ ...+.+++.++ .++.+.||+++.+.
T Consensus 152 ~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~-~~-----~~~~~~~~~~~~~~~~~~Ip~~~~~~ 222 (254)
T 3kjh_A 152 KAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR-NI-----KEEKLIKKHLPEDKILGIIPYNELFI 222 (254)
T ss_dssp TTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC-CH-----HHHHHHHHHSCGGGEEEEEECCHHHH
T ss_pred HHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC-Ch-----hHHHHHHHHhcCCcccccccCcHHHH
Confidence 2234689999998877777777777777777788999999998 42 23455666776 78889999987543
No 23
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.86 E-value=1.9e-21 Score=161.27 Aligned_cols=194 Identities=8% Similarity=-0.011 Sum_probs=111.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCc-ccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA-YLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
|+++|+|+|+|||+||||+|.|||.+|+++|+||+++| .++ +..- ..+...+..+... .+...+ ..+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD---~D~~q~~l--~~~l~~~~~~~~~-~~~~~~--~~l~--- 71 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVID---LDLRQRTS--ARFFENRRAWLDN-KKIELP--EPLA--- 71 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEE---CCTTTCHH--HHHHHHHHHHHHH-HTCCCC--CCEE---
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEE---CCCCCCCH--HHHhCCChhHhHh-ccccCC--Cchh---
Confidence 57899999999999999999999999999999999999 444 2100 0000001111111 111100 1110
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHH
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNA 163 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~ 163 (233)
.-.|..+.. ..........+.+.+.+++++++||||||||||++.. .... +......+++|+.++..++..+
T Consensus 72 ~vl~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~p~~~~~------~~~~-~l~~aD~viiv~~~~~~~~~~~ 143 (286)
T 2xj4_A 72 LNLSDNDVA-LAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDSA------ITRM-AHGRADLVVTPMNDSFVDFDML 143 (286)
T ss_dssp ECSSSCHHH-HTTSCHHHHHHHHHHHHHHHHHHCSEEEEECCSSCCH------HHHH-HHHTCSEEEEEEESSHHHHTTT
T ss_pred eEeeCCCCC-CcChhhhhhHHHHHHHHHHHHhcCCEEEEcCCCCccH------HHHH-HHHHCCEEEEEEcCCccHHHHH
Confidence 111111100 0000001124578888899989999999999988632 1122 2233347888888875433221
Q ss_pred ---HHH-------------H---HHHH----hCC-CcEEEEEEcccCCCch-hhhhhhHHHHHhh---cCCCceEecCCC
Q psy14904 164 ---LLS-------------L---EAIN----SRG-LKLIGWVANHTQIVDT-LFANENYIELTKY---LNVTPLGRIPYL 215 (233)
Q Consensus 164 ---~~~-------------~---~~l~----~~~-~~i~GiVlN~~~~~~~-~~~~~~~~~l~~~---~~~pvlg~IP~~ 215 (233)
... + +.++ +.+ .+ +++|+||++ ++. ...++..+.+++. +|.++.+.||++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~Ip~~ 221 (286)
T 2xj4_A 144 GTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLA-TTEARNRKRLEDRLNALAKRVGFRIGPGLRDR 221 (286)
T ss_dssp EEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCT-TCCGGGHHHHHHHHHHHHHHHCCEEEECCCCC
T ss_pred HHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeec-CCCcchhHHHHHHHHHHHHHcCCccCCCCCch
Confidence 111 2 2222 335 56 579999998 544 3444555666653 688777899998
Q ss_pred CCCC
Q psy14904 216 YNLN 219 (233)
Q Consensus 216 ~~l~ 219 (233)
..+.
T Consensus 222 ~~~~ 225 (286)
T 2xj4_A 222 VIYR 225 (286)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7554
No 24
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.86 E-value=5.1e-21 Score=160.45 Aligned_cols=195 Identities=15% Similarity=0.151 Sum_probs=107.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCC---CCccchHHHHHHHHhCCCccc--ccce
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKN---KIWFNEDVNLLNKYSNSLYEF--TKLI 79 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~---~~l~~~d~~~~~~~~~~~~~~--~~~~ 79 (233)
..|+|+|+| ||||||||+|+|||.+|+++|+||+++| .|++..... .+................... .+.+
T Consensus 47 ~aKVIAIaG-KGGVGKTTtavNLA~aLA~~GkkVllID---~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i 122 (314)
T 3fwy_A 47 GAKVFAVYG-KGGIGKSTTSSNLSAAFSILGKRVLQIG---CDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV 122 (314)
T ss_dssp CCEEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEE---ESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHHHCCCeEEEEe---cCCCCcccccccCCCCCcchhhHhhhccccccccHhHhe
Confidence 578999996 9999999999999999999999999999 444321100 000001111111111111100 0001
Q ss_pred eeee---ecCCCChhhhhhhcCCCCCHHHHHHHHH-----HhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904 80 NPYL---FKYPISPYTSSNLENRIINTSHIINCYN-----YLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL 151 (233)
Q Consensus 80 ~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll 151 (233)
.... ...+.+. ...+.........+.+. .+.+.||++++||++++... .+.++ +.. ...+|+
T Consensus 123 ~~~~~~i~~v~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~---~~~~a-l~a--Ad~viI 192 (314)
T 3fwy_A 123 FEGFNGVMCVEAGG----PPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCG---GFAAP-LQH--ADQAVV 192 (314)
T ss_dssp EECGGGCEEEECCC----CCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCG---GGGGG-GGT--CSEEEE
T ss_pred eecCCCeEEEeCCC----CcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhh---hhHhH-Hhh--CCeEEE
Confidence 0000 0000000 00011111112222222 23468999999999876321 11111 111 236899
Q ss_pred EEcCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904 152 VIDLKIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 152 V~~~~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~ 219 (233)
|++++..++..+...++.++ +.+.++.|+|+|+.+ .. ...+.+.+.++.++++.||++..++
T Consensus 193 vt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~-~~-----~~v~~~a~~~~~~~lg~IP~d~~Vr 258 (314)
T 3fwy_A 193 VTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSR-AT-----DEVDRFCKETNFRRLAHMPDLDAIR 258 (314)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCS-CC-----HHHHHHHHHHTCCEEEEECCCHHHH
T ss_pred EeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCC-ch-----hHHHHHHHHhCCeEEEEecCchHHH
Confidence 99998766655444444333 457889999999876 32 2234555567999999999998655
No 25
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.85 E-value=1.4e-20 Score=160.26 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch----------hhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904 147 LPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT----------LFANENYIELTKYLNVTPLGRIPYLY 216 (233)
Q Consensus 147 ~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~----------~~~~~~~~~l~~~~~~pvlg~IP~~~ 216 (233)
..+++|+.++..++.++...++.+++.++++.|+|+|++. +.. ...+..++.+.+.++.+.++.||+++
T Consensus 238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~-~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~ 316 (349)
T 3ug7_A 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLI-PEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLR 316 (349)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-CSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCS
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCc-cccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 3589999999989999999999999999999999999997 431 12345667788888999999999987
Q ss_pred CCC
Q psy14904 217 NLN 219 (233)
Q Consensus 217 ~l~ 219 (233)
.-.
T Consensus 317 ~e~ 319 (349)
T 3ug7_A 317 TEA 319 (349)
T ss_dssp SCS
T ss_pred CCC
Confidence 544
No 26
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.85 E-value=3.5e-20 Score=156.26 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch----------hhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904 147 LPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT----------LFANENYIELTKYLNVTPLGRIPYLY 216 (233)
Q Consensus 147 ~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~----------~~~~~~~~~l~~~~~~pvlg~IP~~~ 216 (233)
..+++|+.++..++.++...++.+++.++++.|+|+|++. +.. ..+...++.+++.++.+.++.||+.+
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~-~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~ 301 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVL-PEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLK 301 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-CSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCc-cccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 3689999999889999999999999999999999999997 431 22345567778888888888999976
Q ss_pred CC
Q psy14904 217 NL 218 (233)
Q Consensus 217 ~l 218 (233)
.-
T Consensus 302 ~e 303 (324)
T 3zq6_A 302 KE 303 (324)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 27
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.82 E-value=2.7e-20 Score=159.90 Aligned_cols=210 Identities=14% Similarity=0.096 Sum_probs=119.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccc--hHHHHHHHHhCCCc----cc--
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFN--EDVNLLNKYSNSLY----EF-- 75 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~--~d~~~~~~~~~~~~----~~-- 75 (233)
+++++|+|+|.|||+||||+|+|||.+|+++|+||+++|....+.... .-+..+ .-..++........ ..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~--~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~ 218 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDV--FFQAEGNATMSDVIYSLKSRKANLLLKLES 218 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHH--HCCCSCSCCHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHH--HcCCCCCCCHHHHHhhhhcccccccccHHH
Confidence 468999999999999999999999999999999999999331110000 000000 01111111100000 00
Q ss_pred -----ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHhCCC
Q psy14904 76 -----TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLP 148 (233)
Q Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~ 148 (233)
...+. .+ |.++.... ......+.+.+.++.++ ..||+||||||++... ....++.. ...
T Consensus 219 ~i~~~~~~l~--~l--~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~------~~~~~l~~-aD~ 284 (373)
T 3fkq_A 219 CIKQSQEGVS--YF--SSTKVALD---ILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEI------EKLKLLSK-AWR 284 (373)
T ss_dssp TCEECTTSCE--EC--CCCSSGGG---GGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCH------HHHHHHTT-CSE
T ss_pred HhhcCCCCEE--Ee--cCCCChHh---HHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCH------HHHHHHHH-CCE
Confidence 01111 11 11111111 01124556667777766 7999999999977642 12222222 346
Q ss_pred EEEEEcCCCCc---HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhh
Q psy14904 149 IILVIDLKIGC---INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISH 225 (233)
Q Consensus 149 vllV~~~~~~~---~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~ 225 (233)
+++|+.++..+ +.++...++.++.. .+ .++|.|+.. ..........+.+ +..++|++|.||+++......+.+
T Consensus 285 vivv~~~~~~s~~~l~~~~~~l~~l~~~-~~-~~vv~N~~~-v~~~~~~~~~~fl-~~~~l~~lG~IP~D~~~~~~~ii~ 360 (373)
T 3fkq_A 285 IIVVNDGSQLSNYKFMRAYESVVLLEQN-DD-INIIRNMNM-IYNKFSNKNSEML-SNISIKTIGGAPRYEHATVRQIIE 360 (373)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHHHTTS-TT-CCCGGGEEE-EECSCCTTTCCCC-CSCSCEEEEECCCCTTCCHHHHHH
T ss_pred EEEEecCCchHHHHHHHHHHHHHHhccc-CC-cEEEehhHH-HHHHHHHHHHHHh-hcCCccceeecCCCCCcCHHHHHH
Confidence 88899888755 55566666666542 23 566655543 1111111111111 124899999999999999888777
Q ss_pred hcCCCCCC
Q psy14904 226 YLDFSSLF 233 (233)
Q Consensus 226 ~~~~~~~~ 233 (233)
.+..+.+|
T Consensus 361 ~l~~~~~f 368 (373)
T 3fkq_A 361 ALTKMEFF 368 (373)
T ss_dssp HHHTCTTH
T ss_pred HHHHHHHH
Confidence 77666553
No 28
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.81 E-value=9.9e-20 Score=157.60 Aligned_cols=202 Identities=10% Similarity=0.034 Sum_probs=111.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEeeeecCcccCC-CCCCcc------c-hHHHHHHHHh
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMKPIASGAYLNN-KNKIWF------N-EDVNLLNKYS 69 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~dp~~~~~~~~~-~~~~l~------~-~d~~~~~~~~ 69 (233)
.++++|+|+|.|||+||||+|+|||.+|++ +|+||+++| .+++..- ..-+.. . .-...+....
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD---~D~q~~l~~~l~~~~~~~~~~~~~~~~l~~~~ 182 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID---LDPQSSATMFLSHKHSIGIVNATSAQAMLQNV 182 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE---ECTTCHHHHHHSCHHHHSSCCSCHHHHHHHCC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe---CCCCCChhHHhCCccccccccccHHHHHHhhc
Confidence 368999999999999999999999999994 799999999 3333100 000000 0 0000011000
Q ss_pred -------C-CCcccccceeeeeecCCCChhhh-----------hhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccC
Q psy14904 70 -------N-SLYEFTKLINPYLFKYPISPYTS-----------SNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSV 130 (233)
Q Consensus 70 -------~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~ 130 (233)
. +.....+++. .+ |....+. ....+.......+.+.++.++++||||||||||++..
T Consensus 183 ~~~~~~~~~i~~~~~~~l~--vl--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~yD~ViiD~pp~~~~ 258 (398)
T 3ez2_A 183 SREELLEEFIVPSVVPGVD--VM--PASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDA 258 (398)
T ss_dssp CHHHHHHHTCEECSSTTEE--EE--CCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHTTTCSEEEEEECSCCSH
T ss_pred cccccHHHHhhcccCCCce--Ee--cCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhhccCCEEEEeCCCCccH
Confidence 0 0000001111 11 1121110 0111111122344567788889999999999988743
Q ss_pred ccCCCCchHHHHHHhCCCEEEEEcCCCCcHH-------HHHHHHHHHHh--CCCcEEEEEEcccCCCchhhhhhhHHHHH
Q psy14904 131 PFHDNENSADLAEKLGLPIILVIDLKIGCIN-------NALLSLEAINS--RGLKLIGWVANHTQIVDTLFANENYIELT 201 (233)
Q Consensus 131 p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~-------~~~~~~~~l~~--~~~~i~GiVlN~~~~~~~~~~~~~~~~l~ 201 (233)
. ..+.+. . ...+++|+.++..++. .+...++.+++ .+.++.|+|.|+.+.......+...+.++
T Consensus 259 ~-----~~~~l~-~-aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~~~~~~~~~l~ 331 (398)
T 3ez2_A 259 F-----LKNALA-S-ANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAK 331 (398)
T ss_dssp H-----HHHHHH-H-CSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCHHHHHHHHHHH
T ss_pred H-----HHHHHH-H-CCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCchhHHHHHHHHH
Confidence 1 122222 2 2368888888654332 23334444443 35666677554443111223345677888
Q ss_pred hhcCCCce-EecCCCCCCC
Q psy14904 202 KYLNVTPL-GRIPYLYNLN 219 (233)
Q Consensus 202 ~~~~~pvl-g~IP~~~~l~ 219 (233)
+.+|.+++ +.||+++.+.
T Consensus 332 ~~~g~~vl~~~IP~~~~i~ 350 (398)
T 3ez2_A 332 EVFGGDMLDVFLPRLDGFE 350 (398)
T ss_dssp HHHGGGBCSCCEECCHHHH
T ss_pred HHhcccccceeccchHHHH
Confidence 88899999 7899987654
No 29
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.81 E-value=2.3e-20 Score=159.59 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=36.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||+|+|+|.||||||||+|+|||.+|+++|+||+++|
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID 37 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVD 37 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 7899999999999999999999999999999999999
No 30
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.80 E-value=2e-19 Score=155.99 Aligned_cols=202 Identities=9% Similarity=0.002 Sum_probs=95.2
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHH------HcCCeeeEEeeeecCcccC-CCCCCccch-------HHHHHHHHh
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFK------KRGISCIGMKPIASGAYLN-NKNKIWFNE-------DVNLLNKYS 69 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~------~~G~~Vl~~dp~~~~~~~~-~~~~~l~~~-------d~~~~~~~~ 69 (233)
.++++|+|+|.||||||||+|+|||.+|+ ++|+||+++| .+++.. ...-+.... -...+....
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD---~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ 185 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID---LDPQASSTMFLDHTHSIGSILETAAQAMLNNL 185 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE---ESSSSGGGSCC----------CCHHHHHHHTC
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe---CCCCCChhhhhCCCcccCcccccHHHHHHhcc
Confidence 46899999999999999999999999999 6899999998 333221 000011000 001111100
Q ss_pred C----CCccc----ccceeeeeecCCCChhhh-----------hhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccC
Q psy14904 70 N----SLYEF----TKLINPYLFKYPISPYTS-----------SNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSV 130 (233)
Q Consensus 70 ~----~~~~~----~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~ 130 (233)
. +...+ .+++. .+ |.+..+. ....+.......+.+.++.++++||||||||||++..
T Consensus 186 ~~~~~~~~~i~~~~~~~l~--~l--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~yD~VIID~pP~~~~ 261 (403)
T 3ez9_A 186 DAETLRKEVIRPTIVPGVD--VI--PASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVADDYDFIFIDTGPHLDP 261 (403)
T ss_dssp CHHHHHHTTSEECSSTTEE--EE--CCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSGGGCSEEEEEECSSCSH
T ss_pred cccccHHHHHhhcccCCce--EE--ecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHhhcCCEEEEECCCCccH
Confidence 0 00000 01111 11 1221110 0011111112233456677888999999999988742
Q ss_pred ccCCCCchHHHHHHhCCCEEEEEcCCCCcHH-------HHHHHHHHHHhC--CCcEEEE--EEcccCCCchhhhhhhHHH
Q psy14904 131 PFHDNENSADLAEKLGLPIILVIDLKIGCIN-------NALLSLEAINSR--GLKLIGW--VANHTQIVDTLFANENYIE 199 (233)
Q Consensus 131 p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~-------~~~~~~~~l~~~--~~~i~Gi--VlN~~~~~~~~~~~~~~~~ 199 (233)
. ....+. . .+.+++|+.++..++. .+...++.+++. +.++.|+ ++|+++ . ....+...+.
T Consensus 262 ~-----~~~al~-~-aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~-~-~~~~~~~~~~ 332 (403)
T 3ez9_A 262 F-----LLNGLA-A-SDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT-G-KRDHETSHSL 332 (403)
T ss_dssp H-----HHHHHH-H-CSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC-----CHHHHHHHHH
T ss_pred H-----HHHHHH-H-CCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC-C-chhHHHHHHH
Confidence 1 122222 2 2368888888654332 233344444433 5566665 456665 2 2233456678
Q ss_pred HHhhcCCCce-EecCCCCCCChh
Q psy14904 200 LTKYLNVTPL-GRIPYLYNLNIN 221 (233)
Q Consensus 200 l~~~~~~pvl-g~IP~~~~l~~~ 221 (233)
+++.+|.+++ +.||+++.+...
T Consensus 333 ~~~~~g~~vl~~~IP~~~~v~~a 355 (403)
T 3ez9_A 333 AREVYASNILDSSLPRLDGFERC 355 (403)
T ss_dssp HHHHHTTSEECCC----------
T ss_pred HHHHhhHhhhceeCCchHHHHHH
Confidence 8888899999 889999877643
No 31
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.78 E-value=5.8e-18 Score=142.99 Aligned_cols=68 Identities=7% Similarity=0.077 Sum_probs=51.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch----------hhhhhhHHHHHhhcC-CCceEecCCCC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT----------LFANENYIELTKYLN-VTPLGRIPYLY 216 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~----------~~~~~~~~~l~~~~~-~pvlg~IP~~~ 216 (233)
.+++|+.++..++.++...++.++..++++.|+|+|++..|.. ..++..++.+++.++ .|+ +.||+.+
T Consensus 223 ~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~-~~vP~~~ 301 (329)
T 2woo_A 223 TFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHV-VKVPQVP 301 (329)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEE-EEEECCS
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCE-EEecCCC
Confidence 4899999998899999999999999999999999999871111 123345666777774 566 6888754
No 32
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.77 E-value=1.1e-17 Score=142.59 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=36.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
.+++|+.++..++.++...++.++..++++.|+|+|++.
T Consensus 237 ~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 237 TFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 489999999989999999999999999999999999997
No 33
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=99.75 E-value=2.5e-17 Score=138.54 Aligned_cols=170 Identities=15% Similarity=0.125 Sum_probs=126.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
..+.++++||...+||||++..|..++.++|+++.++.+-+++ ++..-.+... +.. ..
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg----------------~~~~~~gi~~---Dav---~~ 208 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG----------------VMLEGDGVAL---DAV---RV 208 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH----------------HHHHSCSCCG---GGS---BH
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh----------------hhhhcCCcch---hHH---HH
Confidence 4689999999999999999999999999999999998732221 1111112111 111 00
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCC-EEEEEcCCCCcH---
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLP-IILVIDLKIGCI--- 160 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~-vllV~~~~~~~~--- 160 (233)
...+ ..+.....++.++||+++|||.+|+.+|. ...+ .+++...+.+ +|+|..++++.+
T Consensus 209 ------df~a---------G~ve~~~~~~~~~~d~vlVEGqGgl~~P~-~~~t-~~ll~g~~p~~vILv~~~~~g~i~~~ 271 (349)
T 2obn_A 209 ------DFAA---------GAVEQMVMRYGKNYDILHIEGQGSLLHPG-STAT-LPLIRGSQPTQLVLVHRAGQTHNGNN 271 (349)
T ss_dssp ------HHHH---------HHHHHHHHHHTTTCSEEEECCCCCTTSTT-CCTH-HHHHHHHCCSEEEEEEETTCCBCSSC
T ss_pred ------HHHh---------hhHHHHHHHhccCCCEEEEeCCCcccCcC-hHhH-HHHHHHcCCCeEEEEECCCCceECCC
Confidence 0011 12333444567789999999999999998 5554 7999988856 999999888776
Q ss_pred --------HHHHHHHHHHHh-----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCC
Q psy14904 161 --------NNALLSLEAINS-----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPY 214 (233)
Q Consensus 161 --------~~~~~~~~~l~~-----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~ 214 (233)
++...+++.+.+ .+++++|+++|.++ ......+++.+.+++.+|+|+++.+..
T Consensus 272 ~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~-~~~~~~~~~~~~ie~~~glPv~d~~r~ 337 (349)
T 2obn_A 272 PHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAH-LDEYAAKEAIAHTIAETGLPCTDVVRF 337 (349)
T ss_dssp TTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTT-SCHHHHHHHHHHHHHHHCSCEECHHHH
T ss_pred CccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CCHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 887777777754 88999999999998 655567788999999999999987654
No 34
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.73 E-value=3.3e-17 Score=138.38 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=51.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch-----------hhhhhhHHHHHhhcC--CCceEecCC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT-----------LFANENYIELTKYLN--VTPLGRIPY 214 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~-----------~~~~~~~~~l~~~~~--~pvlg~IP~ 214 (233)
.+++|+.++..++.++...++.+++.|+++.|+|+|++..|.. ...+..++.+.+.++ .|++ .||+
T Consensus 224 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~-~~pl 302 (334)
T 3iqw_A 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVV-KMPL 302 (334)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEE-EEEC
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEE-EecC
Confidence 4899999998899999999999999999999999999862210 112344566666554 5765 7888
Q ss_pred CC
Q psy14904 215 LY 216 (233)
Q Consensus 215 ~~ 216 (233)
.+
T Consensus 303 ~~ 304 (334)
T 3iqw_A 303 LV 304 (334)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 35
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.71 E-value=4.5e-17 Score=147.57 Aligned_cols=167 Identities=17% Similarity=0.107 Sum_probs=98.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCccc-----c--cc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEF-----T--KL 78 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-----~--~~ 78 (233)
++.|.+++.|||+||||+|++||.+++++|+||+++| .++.. . +...++..... . .+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd---~D~~~-----~--------l~~~l~~~~~~~~~~v~~~~~ 70 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS---TDPAS-----N--------VGQVFSQTIGNTIQAIASVPG 70 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE---CCTTC-----C--------HHHHTTSCCCSSCEECTTSTT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE---CCCCc-----C--------HHHHhCCcccCCCceeccchh
Confidence 3456677888999999999999999999999999998 33321 0 01111111000 0 00
Q ss_pred eeeee-----------------ecCCCChhhh----hhhcC----CCCCHHHHHHHHH--HhhcCCCeEEEeccCccc--
Q psy14904 79 INPYL-----------------FKYPISPYTS----SNLEN----RIINTSHIINCYN--YLSNLTDVIILEGIGGFS-- 129 (233)
Q Consensus 79 ~~~~~-----------------~~~~~~~~~~----~~~~~----~~~~~~~l~~~~~--~l~~~~D~vlID~~~g~~-- 129 (233)
+.... ...-...... ....+ +....+.+.+.++ +++.+||+|||||||...
T Consensus 71 l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~l 150 (589)
T 1ihu_A 71 LSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTI 150 (589)
T ss_dssp EEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHH
Confidence 00000 0000000000 00000 0012355677777 667889999999997521
Q ss_pred ----CccCC-C-C---------------------chHHHHHHhCC----CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEE
Q psy14904 130 ----VPFHD-N-E---------------------NSADLAEKLGL----PIILVIDLKIGCINNALLSLEAINSRGLKLI 178 (233)
Q Consensus 130 ----~p~~~-~-~---------------------~~~~l~~~~~~----~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~ 178 (233)
.|... . + ...++...+.. .+++|+.++..++.++...++.+++.++++.
T Consensus 151 rll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~ 230 (589)
T 1ihu_A 151 RLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQ 230 (589)
T ss_dssp HHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCC
Confidence 11000 0 0 01122222323 3899999999899999999999999999999
Q ss_pred EEEEcccCCCc
Q psy14904 179 GWVANHTQIVD 189 (233)
Q Consensus 179 GiVlN~~~~~~ 189 (233)
|+|+|++. +.
T Consensus 231 gvVlN~v~-~~ 240 (589)
T 1ihu_A 231 YLVINGVL-PK 240 (589)
T ss_dssp EEEEEEEC-CG
T ss_pred EEEEcCCc-Cc
Confidence 99999998 54
No 36
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.71 E-value=1.5e-16 Score=135.04 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=51.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch-------------hhhhhhHHHHHhhcC-CCceEecC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT-------------LFANENYIELTKYLN-VTPLGRIP 213 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~-------------~~~~~~~~~l~~~~~-~pvlg~IP 213 (233)
.+++|+.++..++.++...++.+++.++++.|+|+|++. +.. ...+..++.+.+.++ .|++ .||
T Consensus 233 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~-~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~-~~p 310 (348)
T 3io3_A 233 TFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLL-FAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLV-KMP 310 (348)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEEC-CCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEE-EEE
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCc-cccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEE-Eec
Confidence 489999999889999999999999999999999999997 421 112334566666664 5554 788
Q ss_pred CCC
Q psy14904 214 YLY 216 (233)
Q Consensus 214 ~~~ 216 (233)
+.+
T Consensus 311 l~~ 313 (348)
T 3io3_A 311 LLG 313 (348)
T ss_dssp CCS
T ss_pred CCC
Confidence 866
No 37
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.70 E-value=2.2e-17 Score=149.62 Aligned_cols=203 Identities=9% Similarity=0.049 Sum_probs=114.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC--CC----CCCcc--chHHH-HHHHHhCCCccc
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN--NK----NKIWF--NEDVN-LLNKYSNSLYEF 75 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~--~~----~~~l~--~~d~~-~~~~~~~~~~~~ 75 (233)
+.+++.+++.|||+||||+|+|||..++++|++|+++| .++... .. .+++. .-+.. ......
T Consensus 325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD---~Dp~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~------ 395 (589)
T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT---SDPAAHLSMTLNGSLNNLQVSRIDPHEETERYR------ 395 (589)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE---SCCC-----------CCEEEEECCHHHHHHHHH------
T ss_pred cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEe---CCCcccHhHHhcccCCCceeeecchHHHHHHHH------
Confidence 45689999999999999999999999999999999987 332210 00 00110 00000 000000
Q ss_pred ccceeee---eecCCCChhhhhhhcCCCCCHHHHHHHHHHh--hcCCCeEEEeccCcccCc----------------cCC
Q psy14904 76 TKLINPY---LFKYPISPYTSSNLENRIINTSHIINCYNYL--SNLTDVIILEGIGGFSVP----------------FHD 134 (233)
Q Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l--~~~~D~vlID~~~g~~~p----------------~~~ 134 (233)
+.+.+. .+..+..+.......+.......+.+.+.++ ..+||+|||||||+.... ...
T Consensus 396 -~~v~~~~~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~ 474 (589)
T 1ihu_A 396 -QHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGE 474 (589)
T ss_dssp -HHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC-------------
T ss_pred -HHHHHhhhccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhccc
Confidence 000000 0000000001010100000001122333332 246999999999884211 000
Q ss_pred CCchHHHHHH----hCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCc-----------hhhhhhhHHH
Q psy14904 135 NENSADLAEK----LGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD-----------TLFANENYIE 199 (233)
Q Consensus 135 ~~~~~~l~~~----~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~-----------~~~~~~~~~~ 199 (233)
.....++... ....+++|+.++..++.++...++.+++.++++.|+|+|++. +. .......++.
T Consensus 475 ~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~-~~~~~~~~~~~~~~~~~~~~l~~ 553 (589)
T 1ihu_A 475 KGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSL-SIADTRSPLLRMRAQQELPQIES 553 (589)
T ss_dssp -----CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEES-TTSCCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCc-CCCCCcCHHHHHHHHHHHHHHHH
Confidence 0011222221 124799999999989999999999999999999999999998 43 1223455677
Q ss_pred HHhhcCCCceEecCCCCCCC
Q psy14904 200 LTKYLNVTPLGRIPYLYNLN 219 (233)
Q Consensus 200 l~~~~~~pvlg~IP~~~~l~ 219 (233)
+++.++.|+ +.||+.+.-.
T Consensus 554 l~~~~~~~v-~~iP~~~~e~ 572 (589)
T 1ihu_A 554 VKRQHASRV-ALVPVLASEP 572 (589)
T ss_dssp HHTTTCSSE-EEEECCSSCC
T ss_pred HHHhcCCcE-EEccCCCCCC
Confidence 888888888 7999876544
No 38
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.63 E-value=6.7e-15 Score=128.25 Aligned_cols=174 Identities=15% Similarity=0.146 Sum_probs=100.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
+.++|+++| ++|+||||++.+||.+|+++ |++|+++| .+++.. + ..+.+..+.. . .++..
T Consensus 99 ~~~vI~ivG-~~GvGKTT~a~~LA~~l~~~~G~kVllvd---~D~~r~----~----a~~ql~~~~~-~----~~l~v-- 159 (433)
T 2xxa_A 99 PPAVVLMAG-LQGAGKTTSVGKLGKFLREKHKKKVLVVS---ADVYRP----A----AIKQLETLAE-Q----VGVDF-- 159 (433)
T ss_dssp SSEEEEEEC-STTSSHHHHHHHHHHHHHHTSCCCEEEEE---CCCSST----T----HHHHHHHHHH-H----HTCEE--
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCeEEEEe---cCCCCc----c----HHHHHHhhcc-c----CCeeE--
Confidence 467899997 59999999999999999999 99999999 444421 1 1222221110 0 11111
Q ss_pred ecCCCChhhhhhhcCCCCCHH-HHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH----HhCCCEEEEEcCCC
Q psy14904 84 FKYPISPYTSSNLENRIINTS-HIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE----KLGLPIILVIDLKI 157 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~----~~~~~vllV~~~~~ 157 (233)
+..+. ..+.. .+.+.++.++ ++||+|||||||.+.. ......++.. ....++++|+++..
T Consensus 160 ~~~~~-----------~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 160 FPSDV-----------GQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp CCCCS-----------SSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred EeCCC-----------CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecch
Confidence 11100 01222 2366777776 6899999999876531 0111222221 12347888888764
Q ss_pred CcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCC--ceEecCCCCC
Q psy14904 158 GCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVT--PLGRIPYLYN 217 (233)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~p--vlg~IP~~~~ 217 (233)
+ .++....+.+. .++++.|+|+||++ ..... .....+.+.++.| ++|..+...+
T Consensus 226 g--~~~~~~~~~f~-~~l~i~gvVlnK~D-~~~~~--g~~l~i~~~~~~Pi~~iG~ge~v~d 281 (433)
T 2xxa_A 226 G--QDAANTAKAFN-EALPLTGVVLTKVD-GDARG--GAALSIRHITGKPIKFLGVGEKTEA 281 (433)
T ss_dssp C--TTHHHHHHHHH-HHSCCCCEEEECTT-SSSCC--THHHHHHHHHCCCEEEEECSSSSSC
T ss_pred h--HHHHHHHHHHh-ccCCCeEEEEecCC-CCccH--HHHHHHHHHHCCCeEEEecCCCchh
Confidence 3 22333344433 35778899999998 53222 2333445556766 4465554443
No 39
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.62 E-value=1.1e-15 Score=130.71 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhc-CCCceEecCCCCCCChhhhhh
Q psy14904 147 LPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYL-NVTPLGRIPYLYNLNINLISH 225 (233)
Q Consensus 147 ~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~-~~pvlg~IP~~~~l~~~~~~~ 225 (233)
..+++|+.++..++.++...++.++..|+++.|+|+|+ . . .++.+++.+ +.|+. .||..+.-....+++
T Consensus 215 t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~-~-~-------~l~~i~~~F~~~~v~-~vpl~~~e~l~~l~~ 284 (374)
T 3igf_A 215 VAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS-S-Q-------TEGDLSAEFTPLSVT-VVPDVTKGDWQPLID 284 (374)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC-C-S-------CCCCCGGGSTTSCEE-ECCCCBTTBCHHHHH
T ss_pred eEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC-H-H-------HHHHHHHhcCCCceE-ECCCCChhHHHHHHH
Confidence 35899999999899999999999999999999999999 4 2 233345555 56765 788755445555655
Q ss_pred hc
Q psy14904 226 YL 227 (233)
Q Consensus 226 ~~ 227 (233)
.|
T Consensus 285 ~l 286 (374)
T 3igf_A 285 AL 286 (374)
T ss_dssp HC
T ss_pred Hh
Confidence 55
No 40
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.50 E-value=1.7e-12 Score=108.98 Aligned_cols=171 Identities=13% Similarity=0.204 Sum_probs=94.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+.++|+|+|. +|+||||++.+||..++..|++|++++ .+.... .....+..+..... . .++..+..
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid---~D~~r~--------~a~~ql~~~~~~~~-~-~~l~vip~ 169 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAA---ADTFRA--------GATQQLEEWIKTRL-N-NKVDLVKA 169 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEE---CCCSCH--------HHHHHHHHHHTTTS-C-TTEEEECC
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCcch--------hHHHHHHHHHhccc-c-CCceEEeC
Confidence 4679999998 999999999999999999999999998 333211 11112222221000 0 12221111
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHH-HhhcCCCeEEEeccCcccCccCCCCchHHHH-----H-----HhCCCEEEEE
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYN-YLSNLTDVIILEGIGGFSVPFHDNENSADLA-----E-----KLGLPIILVI 153 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~-----~-----~~~~~vllV~ 153 (233)
.. ..... ...+.+.+. .++++||+|||||||.+... . ....++. . .....+++|.
T Consensus 170 ~~-~~~~p----------~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~--~-~l~~eL~~~~~vi~~~~p~~~d~vllVl 235 (320)
T 1zu4_A 170 NK-LNADP----------ASVVFDAIKKAKEQNYDLLLIDTAGRLQNK--T-NLMAELEKMNKIIQQVEKSAPHEVLLVI 235 (320)
T ss_dssp SS-TTCCH----------HHHHHHHHHHHHHTTCSEEEEECCCCGGGH--H-HHHHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CC-CCCCH----------HHHHHHHHHHHHhcCCCEEEEcCCCccccc--H-HHHHHHHHHHHHHhcccCCCCceEEEEE
Confidence 11 01000 112233333 34679999999999876421 0 0111111 1 0123568888
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
++..+ . +.+...+.+ +..+++.|+|+|+++ +... ..... .+...++.|+.
T Consensus 236 ~a~~~-~-~~l~~~~~~-~~~~~i~GvVltk~d-~~~~-~g~~~-~~~~~~~~Pi~ 285 (320)
T 1zu4_A 236 DATTG-Q-NGVIQAEEF-SKVADVSGIILTKMD-STSK-GGIGL-AIKELLNIPIK 285 (320)
T ss_dssp EGGGT-H-HHHHHHHHH-TTTSCCCEEEEECGG-GCSC-TTHHH-HHHHHHCCCEE
T ss_pred ECCCc-H-HHHHHHHHH-hhcCCCcEEEEeCCC-CCCc-hhHHH-HHHHHHCcCEE
Confidence 87643 2 333333333 345789999999998 4322 22333 34445688875
No 41
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.48 E-value=8.5e-13 Score=114.68 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=95.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
.++|+++|. +|+||||++.+||.+|+++|++|++++ +++.. + .....+..+... ..+ ++ +.
T Consensus 100 p~vIlivG~-~G~GKTTt~~kLA~~l~~~G~kVllv~---~D~~R----~----aa~eqL~~~~~~-----~gv-pv-~~ 160 (443)
T 3dm5_A 100 PTILLMVGI-QGSGKTTTVAKLARYFQKRGYKVGVVC---SDTWR----P----GAYHQLRQLLDR-----YHI-EV-FG 160 (443)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEE---CCCSS----T----HHHHHHHHHHGG-----GTC-EE-EC
T ss_pred CeEEEEECc-CCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCcc----h----hHHHHHHHHHHh-----cCC-cE-Ee
Confidence 568999998 999999999999999999999999998 43332 1 122333333211 011 11 11
Q ss_pred CCCChhhhhhhcCCCCC-HHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH---Hh-CCCEEEEEcCCCCc
Q psy14904 86 YPISPYTSSNLENRIIN-TSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE---KL-GLPIILVIDLKIGC 159 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~---~~-~~~vllV~~~~~~~ 159 (233)
.+.. .+ .+.+.+.++.+. ++||+|||||||.... ......++.. .. ...+++|.++..+.
T Consensus 161 ~~~~-----------~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 161 NPQE-----------KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVIHPHEVILVIDGTIGQ 226 (443)
T ss_dssp CTTC-----------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred cCCC-----------CCHHHHHHHHHHHHHhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhhcCceEEEEEeCCCch
Confidence 1000 11 123456666655 3699999999976532 1111222221 11 23588898876531
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
++....+.+. ..+++.|+|+||++ ... . ......+...++.|+.
T Consensus 227 --~a~~~a~~f~-~~~~i~gVIlTKlD-~~~-~-gG~~ls~~~~~g~PI~ 270 (443)
T 3dm5_A 227 --QAYNQALAFK-EATPIGSIIVTKLD-GSA-K-GGGALSAVAATGAPIK 270 (443)
T ss_dssp --GHHHHHHHHH-HSCTTEEEEEECCS-SCS-S-HHHHHHHHHTTCCCEE
T ss_pred --hHHHHHHHHH-hhCCCeEEEEECCC-Ccc-c-ccHHHHHHHHHCCCEE
Confidence 2233334433 34678899999998 432 1 2233333445788885
No 42
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.48 E-value=1.8e-12 Score=107.71 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=95.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHH---hCCCcccccceeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY---SNSLYEFTKLINPY 82 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~ 82 (233)
.++++++| ++|+||||++.+||..++++|++|++++ .+++.. .....+..+ .+++ +
T Consensus 98 ~~vi~i~G-~~G~GKTT~~~~la~~~~~~g~~v~l~~---~D~~r~--------~a~~ql~~~~~~~~v~---------v 156 (297)
T 1j8m_F 98 PYVIMLVG-VQGTGKTTTAGKLAYFYKKKGFKVGLVG---ADVYRP--------AALEQLQQLGQQIGVP---------V 156 (297)
T ss_dssp SEEEEEEC-SSCSSTTHHHHHHHHHHHHTTCCEEEEE---CCCSSS--------HHHHHHHHHHHHHTCC---------E
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEe---cCCCCH--------HHHHHHHHHhccCCeE---------E
Confidence 56788886 5999999999999999999999999998 333321 111112221 2211 1
Q ss_pred eecCCCChhhhhhhcCCCCCH-HHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHH----HHHhCCCEEEEEcCC
Q psy14904 83 LFKYPISPYTSSNLENRIINT-SHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADL----AEKLGLPIILVIDLK 156 (233)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l----~~~~~~~vllV~~~~ 156 (233)
+..+.. .+. +.+.+.+++++ ++||+|||||||....+.... ...++ .......+++|+++.
T Consensus 157 -~~~~~~-----------~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~-l~~el~~i~~~~~~d~vllVvda~ 223 (297)
T 1j8m_F 157 -YGEPGE-----------KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAA-LLEEMKNIYEAIKPDEVTLVIDAS 223 (297)
T ss_dssp -ECCTTC-----------CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHH-HHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred -EecCCC-----------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHH-HHHHHHHHHHHhcCCEEEEEeeCC
Confidence 111100 122 23456777776 799999999987653101000 11111 112234688888775
Q ss_pred CCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 157 IGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.+ .++....+.+.+ ++++.|+|+||++ .... . .....+...++.|+.
T Consensus 224 ~g--~~~~~~~~~~~~-~~~i~gvVlnk~D-~~~~-~-g~~~~~~~~~~~pi~ 270 (297)
T 1j8m_F 224 IG--QKAYDLASKFNQ-ASKIGTIIITKMD-GTAK-G-GGALSAVAATGATIK 270 (297)
T ss_dssp GG--GGHHHHHHHHHH-TCTTEEEEEECGG-GCTT-H-HHHHHHHHTTTCCEE
T ss_pred ch--HHHHHHHHHHHh-hCCCCEEEEeCCC-CCcc-h-HHHHHHHHHHCcCEE
Confidence 32 233434444443 5888999999998 4322 1 223345556788886
No 43
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.46 E-value=1.2e-12 Score=113.57 Aligned_cols=166 Identities=15% Similarity=0.130 Sum_probs=95.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+.++|+++|. +|+||||++.+||..++.+|++|++++ .+... + .....+..+.. . .++..+..
T Consensus 97 ~~~vi~i~G~-~GsGKTT~~~~LA~~l~~~g~~Vllvd---~D~~r----~----aa~~qL~~~~~-~----~gv~v~~~ 159 (425)
T 2ffh_A 97 DRNLWFLVGL-QGSGKTTTAAKLALYYKGKGRRPLLVA---ADTQR----P----AAREQLRLLGE-K----VGVPVLEV 159 (425)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEE---CCSSC----H----HHHHHHHHHHH-H----HTCCEEEC
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEee---ccccC----c----hhHHHHHHhcc-c----CCccEEec
Confidence 3568889875 999999999999999999999999998 33321 1 11111222110 0 01111111
Q ss_pred cCCCChhhhhhhcCCCCCHHH-HHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHH----hCCCEEEEEcCCCC
Q psy14904 85 KYPISPYTSSNLENRIINTSH-IINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEK----LGLPIILVIDLKIG 158 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----~~~~vllV~~~~~~ 158 (233)
... .+... +.+.+++++ ++||+|||||||.+.. ......+++.. ...++++|.++..+
T Consensus 160 ~~~-------------~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~tg 223 (425)
T 2ffh_A 160 MDG-------------ESPESIRRRVEEKARLEARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (425)
T ss_dssp CTT-------------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred CCC-------------CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEeccch
Confidence 100 12222 356777764 8999999999987532 11112222211 24578899887542
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.++....+.+. ..+++.|+|+|+++ .... . .....+.+.+|.|+.
T Consensus 224 --q~av~~a~~f~-~~l~i~GVIlTKlD-~~~~-~-g~alsi~~~~g~PI~ 268 (425)
T 2ffh_A 224 --QEALSVARAFD-EKVGVTGLVLTKLD-GDAR-G-GAALSARHVTGKPIY 268 (425)
T ss_dssp --THHHHHHHHHH-HHTCCCEEEEESGG-GCSS-C-HHHHHHHHHHCCCEE
T ss_pred --HHHHHHHHHHH-hcCCceEEEEeCcC-Cccc-H-HHHHHHHHHHCCCEE
Confidence 33444444433 24678999999998 4322 1 223334445688854
No 44
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.42 E-value=6.2e-12 Score=104.40 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=93.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHH---HhCCCcccccceee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK---YSNSLYEFTKLINP 81 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~ 81 (233)
+.++++++| ++|+||||++.+||..++..|.+|++++ .+.+. + .....+.. ..++ ..
T Consensus 97 ~~~~i~i~g-~~G~GKTT~~~~la~~~~~~~~~v~l~~---~d~~~----~----~~~~ql~~~~~~~~l--------~~ 156 (295)
T 1ls1_A 97 DRNLWFLVG-LQGSGKTTTAAKLALYYKGKGRRPLLVA---ADTQR----P----AAREQLRLLGEKVGV--------PV 156 (295)
T ss_dssp SSEEEEEEC-CTTTTHHHHHHHHHHHHHHTTCCEEEEE---CCSSC----H----HHHHHHHHHHHHHTC--------CE
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEec---CCccc----H----hHHHHHHHhcccCCe--------EE
Confidence 356899996 5999999999999999999999999998 33321 1 11111111 1221 11
Q ss_pred eeecCCCChhhhhhhcCCCCCH-HHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHH----hCCCEEEEEcC
Q psy14904 82 YLFKYPISPYTSSNLENRIINT-SHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEK----LGLPIILVIDL 155 (233)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----~~~~vllV~~~ 155 (233)
+....+ ... +.++..++.+. .+||+|||||||.... .......+... ....+++|.++
T Consensus 157 ~~~~~~-------------~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~ 220 (295)
T 1ls1_A 157 LEVMDG-------------ESPESIRRRVEEKARLEARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDA 220 (295)
T ss_dssp EECCTT-------------CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred EEcCCC-------------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence 111100 011 12355666664 7999999999976532 11111222111 13467778876
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.. . .++....+.+.. .+++.|+|+|+++ ++.. ........ ..++.|+.
T Consensus 221 ~~-~-~~~~~~~~~~~~-~~~i~givlnk~d-~~~~-~g~~~~~~-~~~~~pi~ 268 (295)
T 1ls1_A 221 MT-G-QEALSVARAFDE-KVGVTGLVLTKLD-GDAR-GGAALSAR-HVTGKPIY 268 (295)
T ss_dssp GG-T-HHHHHHHHHHHH-HTCCCEEEEECGG-GCSS-CHHHHHHH-HHHCCCEE
T ss_pred CC-c-HHHHHHHHHHhh-cCCCCEEEEECCC-CCcc-HHHHHHHH-HHHCcCEE
Confidence 53 2 334444444332 4778999999998 4332 22334443 45688886
No 45
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.38 E-value=5.7e-12 Score=111.45 Aligned_cols=166 Identities=11% Similarity=0.106 Sum_probs=92.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
+.++|+|+|. +|+||||++.+||.+++++|++|++++ .+++. + ....++...... ..+..+..
T Consensus 100 ~~~vI~ivG~-~GvGKTTl~~kLA~~l~~~G~kVllVd---~D~~r----~----aa~~qL~~~~~~-----~~i~v~~~ 162 (504)
T 2j37_W 100 KQNVIMFVGL-QGSGKTTTCSKLAYYYQRKGWKTCLIC---ADTFR----A----GAFDQLKQNATK-----ARIPFYGS 162 (504)
T ss_dssp --EEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE---ECCSS----S----HHHHHHHHHHHH-----HTCCEEEC
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEe---ccccc----h----hHHHHHHHHhhc-----cCceEEcc
Confidence 4568999988 899999999999999999999999998 33322 1 122333322110 01111111
Q ss_pred cCCCChhhhhhhcCCCCCH-HHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHH---HH-HhCCCEEEEEcCCCC
Q psy14904 85 KYPISPYTSSNLENRIINT-SHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADL---AE-KLGLPIILVIDLKIG 158 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l---~~-~~~~~vllV~~~~~~ 158 (233)
.. . .+. +.+.+.++.+. ++||++||||||..... .....++ .. .....+++|+++..+
T Consensus 163 ~~--~-----------~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 163 YT--E-----------MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp CC--C-----------SCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred CC--C-----------CCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccc
Confidence 10 0 011 22345566654 78999999999875310 0011111 11 123467888888654
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
. + .....+.+.+. +++.|+|+||++ .... ....+. +.+.++.|+.
T Consensus 227 ~-~-~~~~a~~~~~~-~~i~gvVlNK~D-~~~~-~g~~l~-~~~~~g~PI~ 271 (504)
T 2j37_W 227 Q-A-CEAQAKAFKDK-VDVASVIVTKLD-GHAK-GGGALS-AVAATKSPII 271 (504)
T ss_dssp T-T-HHHHHHHHHHH-HCCCCEEEECTT-SCCC-CTHHHH-HHHHHCCCEE
T ss_pred c-c-HHHHHHHHHhh-cCceEEEEeCCc-cccc-hHHHHH-HHHHhCCCeE
Confidence 2 1 22233333332 566799999998 4321 122333 4456788883
No 46
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.34 E-value=1.2e-11 Score=107.62 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=94.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
.++|+|+|. +|+||||++.+||..++++|++|++++ .+++.......+. ......+++ + +.
T Consensus 99 ~~vI~ivG~-~GvGKTTla~~La~~l~~~G~kVllv~---~D~~r~~a~~qL~-----~~~~~~gv~---------v-~~ 159 (432)
T 2v3c_C 99 QNVILLVGI-QGSGKTTTAAKLARYIQKRGLKPALIA---ADTYRPAAYEQLK-----QLAEKIHVP---------I-YG 159 (432)
T ss_dssp CCCEEEECC-SSSSTTHHHHHHHHHHHHHHCCEEEEC---CSCCCTTGGGSSH-----HHHHHSSCC---------E-EC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe---ccccCchHHHHHH-----HhhhccCcc---------e-Ee
Confidence 468999997 999999999999999999999999998 3333211001110 011112211 1 11
Q ss_pred CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHH----hCCCEEEEEcCCCCcHH
Q psy14904 86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEK----LGLPIILVIDLKIGCIN 161 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----~~~~vllV~~~~~~~~~ 161 (233)
.+. .+.+. .+.+.+.++.+ ++||+|||||||.... .......+... ....+++|+++..+.
T Consensus 160 ~~~--------~~~dp-~~i~~~~l~~~-~~~D~vIIDT~G~~~~---~~~l~~~l~~i~~~~~~d~vllVvda~~g~-- 224 (432)
T 2v3c_C 160 DET--------RTKSP-VDIVKEGMEKF-KKADVLIIDTAGRHKE---EKGLLEEMKQIKEITNPDEIILVIDGTIGQ-- 224 (432)
T ss_dssp CSS--------SCCSS-STTHHHHHHTT-SSCSEEEEECCCSCSS---HHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--
T ss_pred cCC--------CCCCH-HHHHHHHHHHh-hCCCEEEEcCCCCccc---cHHHHHHHHHHHHHhcCcceeEEeeccccH--
Confidence 100 00000 01234566666 7999999999976531 00011111111 123577888765432
Q ss_pred HHHHHHHHHHhCCC-cEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904 162 NALLSLEAINSRGL-KLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP 213 (233)
Q Consensus 162 ~~~~~~~~l~~~~~-~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP 213 (233)
++....+.+. .++ ++.|+|+|+++ .... ...... +.+.++.|+. .+.
T Consensus 225 ~~~~~~~~~~-~~~~~i~gvVlnK~D-~~~~-~g~~l~-~~~~~~~pi~-~ig 272 (432)
T 2v3c_C 225 QAGIQAKAFK-EAVGEIGSIIVTKLD-GSAK-GGGALS-AVAETKAPIK-FIG 272 (432)
T ss_dssp GHHHHHHHHH-TTSCSCEEEEEECSS-SCST-THHHHH-HHHHSSCCEE-EEC
T ss_pred HHHHHHHHHh-hcccCCeEEEEeCCC-Cccc-hHHHHH-HHHHHCCCEE-Eee
Confidence 2333333333 456 78999999998 4321 122333 5556788875 553
No 47
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.29 E-value=3.4e-11 Score=104.53 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=92.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK 85 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
.++|+++|. +|+||||++.+||.+|+++|++|++++ ++... + .....+..+.... .+ ++ +.
T Consensus 97 ~~vI~lvG~-~GsGKTTt~~kLA~~l~~~G~kVllv~---~D~~r----~----~a~eqL~~~~~~~-----gv-~~-~~ 157 (433)
T 3kl4_A 97 PFIIMLVGV-QGSGKTTTAGKLAYFYKKRGYKVGLVA---ADVYR----P----AAYDQLLQLGNQI-----GV-QV-YG 157 (433)
T ss_dssp SEEEEECCC-TTSCHHHHHHHHHHHHHHTTCCEEEEE---ECCSC----H----HHHHHHHHHHHTT-----TC-CE-EC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe---cCccc----h----hHHHHHHHHHHhc-----CC-ce-ee
Confidence 568888887 899999999999999999999999988 33321 1 1122222221100 01 11 11
Q ss_pred CCCChhhhhhhcCCCCCH-HHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHH---HHh-CCCEEEEEcCCCCc
Q psy14904 86 YPISPYTSSNLENRIINT-SHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLA---EKL-GLPIILVIDLKIGC 159 (233)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~---~~~-~~~vllV~~~~~~~ 159 (233)
.... .+. ....+.++.+. ++||+||||+||....+.. .....++. ... ...+++|.++..+.
T Consensus 158 ~~~~-----------~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d-~~lm~el~~i~~~~~pd~vlLVlDa~~gq 225 (433)
T 3kl4_A 158 EPNN-----------QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEE-TKLLEEMKEMYDVLKPDDVILVIDASIGQ 225 (433)
T ss_dssp CTTC-----------SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCT-THHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred cccc-----------CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCC-HHHHHHHHHHHHhhCCcceEEEEeCccch
Confidence 1000 111 22345566554 6899999999976431111 11122222 222 24688888876531
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
++....+.+.+ .+++.|+|+||++ ... .....+.... ..+.|+.
T Consensus 226 --~a~~~a~~f~~-~~~~~gVIlTKlD-~~a-~~G~als~~~-~~g~Pi~ 269 (433)
T 3kl4_A 226 --KAYDLASRFHQ-ASPIGSVIITKMD-GTA-KGGGALSAVV-ATGATIK 269 (433)
T ss_dssp --GGHHHHHHHHH-HCSSEEEEEECGG-GCS-CHHHHHHHHH-HHTCEEE
T ss_pred --HHHHHHHHHhc-ccCCcEEEEeccc-ccc-cchHHHHHHH-HHCCCEE
Confidence 22233344332 3567899999998 332 2223334333 4688874
No 48
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.26 E-value=1.2e-10 Score=96.92 Aligned_cols=164 Identities=14% Similarity=0.203 Sum_probs=90.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHH---hCCCcccccceee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY---SNSLYEFTKLINP 81 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~ 81 (233)
+.++|+|+|. +|+||||++.+||..++..|.+|++++ .+... . .....+..+ .++ .
T Consensus 103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~---~D~~r----~----~a~eqL~~~~~~~gl--------~- 161 (306)
T 1vma_A 103 PPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAA---ADTFR----A----AAIEQLKIWGERVGA--------T- 161 (306)
T ss_dssp SCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE---ECTTC----H----HHHHHHHHHHHHHTC--------E-
T ss_pred CCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEc---ccccc----H----HHHHHHHHHHHHcCC--------c-
Confidence 4679999998 999999999999999999999999987 33321 1 111112211 221 1
Q ss_pred eeecCCCChhhhhhhcCCCCCHHH-HHHHHH-HhhcCCCeEEEeccCcccCccCCCC--chHHHHHHh-------CCCEE
Q psy14904 82 YLFKYPISPYTSSNLENRIINTSH-IINCYN-YLSNLTDVIILEGIGGFSVPFHDNE--NSADLAEKL-------GLPII 150 (233)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~-~l~~~~D~vlID~~~g~~~p~~~~~--~~~~l~~~~-------~~~vl 150 (233)
+ +..... .+..+ +.+.+. .+..+||+||||+|+... ....+ ....+.... ...++
T Consensus 162 ~-~~~~s~-----------~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~--~~~~l~~eL~~l~~~i~~~i~~~p~~vl 227 (306)
T 1vma_A 162 V-ISHSEG-----------ADPAAVAFDAVAHALARNKDVVIIDTAGRLH--TKKNLMEELRKVHRVVKKKIPDAPHETL 227 (306)
T ss_dssp E-ECCSTT-----------CCHHHHHHHHHHHHHHTTCSEEEEEECCCCS--CHHHHHHHHHHHHHHGGGTCTTCCSEEE
T ss_pred E-EecCCc-----------cCHHHHHHHHHHHHHhcCCCEEEEECCCchh--hHHHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 1 111000 11111 223333 356799999999986421 11000 001111111 23468
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 151 LVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 151 lV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
+|.++.. . .+.+...+.+.+ ..++.|+|+|+++ ... .... .-.+...++.|+.
T Consensus 228 lVlda~t-~-~~~l~~a~~~~~-~~~i~gvVlTk~D-~~~-~gG~-~l~~~~~~~~Pi~ 280 (306)
T 1vma_A 228 LVIDATT-G-QNGLVQAKIFKE-AVNVTGIILTKLD-GTA-KGGI-TLAIARELGIPIK 280 (306)
T ss_dssp EEEEGGG-H-HHHHHHHHHHHH-HSCCCEEEEECGG-GCS-CTTH-HHHHHHHHCCCEE
T ss_pred EEEECCC-C-HHHHHHHHHHHh-cCCCCEEEEeCCC-Ccc-chHH-HHHHHHHHCCCEE
Confidence 8887752 2 223333344333 3788999999998 432 2223 3334445688886
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.23 E-value=3.5e-10 Score=93.82 Aligned_cols=162 Identities=11% Similarity=0.063 Sum_probs=91.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (233)
+.++++++|. +|+||||++.+||..++. +|++|++++ .++.. .. ....+..+.... .+. .
T Consensus 104 ~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~---~D~~r----~~----a~eqL~~~~~~~-----gl~-~- 164 (296)
T 2px0_A 104 HSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFIT---TDTYR----IA----AVEQLKTYAELL-----QAP-L- 164 (296)
T ss_dssp CSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEE---CCCSS----TT----HHHHHHHHHTTT-----TCC-C-
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEe---cCccc----ch----HHHHHHHHHHhc-----CCC-e-
Confidence 3568999998 899999999999999996 899999998 33321 11 112222222110 010 0
Q ss_pred ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhC----CCEEEEEcCCCCc
Q psy14904 84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLG----LPIILVIDLKIGC 159 (233)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~----~~vllV~~~~~~~ 159 (233)
+.. .....+...+..+ .+||+|||||+|... .. .....++..... ..+++|.++.. .
T Consensus 165 ~~~--------------~~~~~l~~al~~~-~~~dlvIiDT~G~~~--~~-~~~~~el~~~l~~~~~~~~~lVl~at~-~ 225 (296)
T 2px0_A 165 EVC--------------YTKEEFQQAKELF-SEYDHVFVDTAGRNF--KD-PQYIDELKETIPFESSIQSFLVLSATA-K 225 (296)
T ss_dssp CBC--------------SSHHHHHHHHHHG-GGSSEEEEECCCCCT--TS-HHHHHHHHHHSCCCTTEEEEEEEETTB-C
T ss_pred Eec--------------CCHHHHHHHHHHh-cCCCEEEEeCCCCCh--hh-HHHHHHHHHHHhhcCCCeEEEEEECCC-C
Confidence 000 0123456666665 789999999876532 11 111223333321 24567775543 3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
.+.+....+.+. .+++.|+|+|+++ .... ....... ...++.|+.
T Consensus 226 ~~~~~~~~~~~~--~l~~~giVltk~D-~~~~-~g~~~~~-~~~~~~pi~ 270 (296)
T 2px0_A 226 YEDMKHIVKRFS--SVPVNQYIFTKID-ETTS-LGSVFNI-LAESKIGVG 270 (296)
T ss_dssp HHHHHHHTTTTS--SSCCCEEEEECTT-TCSC-CHHHHHH-HHTCSCCCS
T ss_pred HHHHHHHHHHHh--cCCCCEEEEeCCC-cccc-hhHHHHH-HHHHCcCEE
Confidence 333333333332 4677899999998 4322 2233443 445788875
No 50
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.13 E-value=1.5e-10 Score=93.86 Aligned_cols=37 Identities=8% Similarity=-0.027 Sum_probs=34.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+...+.+++.|||+||||++.+|+.+++ +|++|+++|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 4467888899999999999999999999 999999998
No 51
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=99.05 E-value=1.5e-09 Score=91.51 Aligned_cols=142 Identities=14% Similarity=0.179 Sum_probs=91.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF 84 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (233)
..++|+++|+..++|||+++..|..++.++|+++.++.+-+++.... ...|.+. +..
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~---------------~~~gv~~------D~~-- 224 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIG---------------ADAGYVI------DAV-- 224 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTT---------------CSEECCG------GGS--
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeec---------------cCCCCCC------Cce--
Confidence 46899999999999999999999999999999999987332211100 0011110 100
Q ss_pred cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc-CC-------
Q psy14904 85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID-LK------- 156 (233)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~-~~------- 156 (233)
..++.+... +.+...++ ++++|+++|||++|+..|..... .+.+........++++. ++
T Consensus 225 ---~~~~~ag~~-------e~~i~~~~--~~~~D~ivVEGqGgl~~P~~~~v-~~~ll~g~~p~~vIl~h~~~r~~~~~~ 291 (350)
T 2g0t_A 225 ---PADFVSGVV-------EKAVLKLE--KTGKEIVFVEGQGALRHPAYGQV-TLGLLYGSNPDVVFLVHDPSRDHFESF 291 (350)
T ss_dssp ---BGGGHHHHH-------HHHHHHHH--HTTCSEEEEECCSCTTCTTTHHH-HHHHHHHHCCSEEEEECCTTCSSCTTC
T ss_pred ---ecchhhHHH-------HhhHHHhh--hcCCCEEEEccCeeccccCchHH-HHHHHcCCCCCEEEEEeCCCCccccCC
Confidence 112222211 22222333 67999999999999998864321 45556655545555543 22
Q ss_pred ----C-CcHHHHHHHHHHHHhCCCcEEEEE-Ecc
Q psy14904 157 ----I-GCINNALLSLEAINSRGLKLIGWV-ANH 184 (233)
Q Consensus 157 ----~-~~~~~~~~~~~~l~~~~~~i~GiV-lN~ 184 (233)
. .++++....++.+. +.+++|++ +|.
T Consensus 292 ~~~~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 292 PEIPKKPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp TTSSCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcccCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 3 57787777777765 78999999 995
No 52
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.92 E-value=4.9e-09 Score=83.05 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=34.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+...+.+.||||||||+++++|..++++|++|++++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35666788889999999999999999999999999988
No 53
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.74 E-value=9.6e-08 Score=81.09 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=33.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..+|+|+|. +|+||||++.+|+..++.+|++|++++
T Consensus 78 ~~~~I~i~G~-~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGV-PGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4568888887 999999999999999999999999987
No 54
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.68 E-value=1.7e-07 Score=71.05 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=34.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++|+++.|+|. .|+||||++..|+..|.++|++|.+++
T Consensus 2 ~~~~~i~i~G~-sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 2 NAMNVWQVVGY-KHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp --CCEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECC-CCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 35789999996 799999999999999999999999998
No 55
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.55 E-value=2.8e-06 Score=71.22 Aligned_cols=163 Identities=16% Similarity=0.147 Sum_probs=88.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHH---HHHhCCCcccccceee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLL---NKYSNSLYEFTKLINP 81 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~~~ 81 (233)
+..++++.|. .|+||||+...|+..+...|.+|.+.. .+.... .....+ ....|+.
T Consensus 128 ~g~vi~lvG~-nGaGKTTll~~Lag~l~~~~g~V~l~g---~D~~r~--------~a~eql~~~~~~~gv~--------- 186 (328)
T 3e70_C 128 KPYVIMFVGF-NGSGKTTTIAKLANWLKNHGFSVVIAA---SDTFRA--------GAIEQLEEHAKRIGVK--------- 186 (328)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE---ECCSST--------THHHHHHHHHHHTTCE---------
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEEe---eccccc--------chHHHHHHHHHHcCce---------
Confidence 4568999999 999999999999999999999999876 222211 112222 2222311
Q ss_pred eeecC-CCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCchHH---HHHHh-CCCEEEEEcC
Q psy14904 82 YLFKY-PISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNENSAD---LAEKL-GLPIILVIDL 155 (233)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~~~~---l~~~~-~~~vllV~~~ 155 (233)
+.... ...|.. .+.+.+.. ...++|+++||+++.... . .....+ ++..+ ..+.+++.++
T Consensus 187 ~v~q~~~~~p~~------------~v~e~l~~~~~~~~d~vliDtaG~~~~--~-~~l~~eL~~i~ral~~de~llvLDa 251 (328)
T 3e70_C 187 VIKHSYGADPAA------------VAYDAIQHAKARGIDVVLIDTAGRSET--N-RNLMDEMKKIARVTKPNLVIFVGDA 251 (328)
T ss_dssp EECCCTTCCHHH------------HHHHHHHHHHHHTCSEEEEEECCSCCT--T-TCHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred EEeccccCCHHH------------HHHHHHHHHHhccchhhHHhhccchhH--H-HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 11111 111111 12333322 235899999999876431 1 111122 22222 2356777775
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
..+ .++....+.+.+ ..++-++|+|+++ .. ......+..+. .++.|+.
T Consensus 252 ~t~--~~~~~~~~~~~~-~~~it~iilTKlD-~~-a~~G~~l~~~~-~~~~pi~ 299 (328)
T 3e70_C 252 LAG--NAIVEQARQFNE-AVKIDGIILTKLD-AD-ARGGAALSISY-VIDAPIL 299 (328)
T ss_dssp GGT--THHHHHHHHHHH-HSCCCEEEEECGG-GC-SCCHHHHHHHH-HHTCCEE
T ss_pred HHH--HHHHHHHHHHHH-hcCCCEEEEeCcC-Cc-cchhHHHHHHH-HHCCCEE
Confidence 433 234444444432 2456689999998 42 22233344433 4588876
No 56
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.44 E-value=3.3e-06 Score=74.20 Aligned_cols=165 Identities=18% Similarity=0.240 Sum_probs=86.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHH---HhCCCcccccceeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK---YSNSLYEFTKLINPY 82 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~ 82 (233)
..+|+|.|. +|+||||+...|+..+...|.+|.+.. .+... ......+.. ..++ ++
T Consensus 293 GeVI~LVGp-NGSGKTTLl~~LAgll~~~~G~V~l~g---~D~~r--------~aa~eQL~~~~~r~~I---------~v 351 (503)
T 2yhs_A 293 PFVILMVGV-NGVGKTTTIGKLARQFEQQGKSVMLAA---GDTFR--------AAAVEQLQVWGQRNNI---------PV 351 (503)
T ss_dssp TEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEC---CCTTC--------HHHHHHHHHHHHHHTC---------CE
T ss_pred CeEEEEECC-CcccHHHHHHHHHHHhhhcCCeEEEec---Ccccc--------hhhHHHHHHHHHhcCc---------eE
Confidence 468999999 899999999999999999899998865 21211 001111111 1121 11
Q ss_pred eecCC-CChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCc--cCCCC-chHHHHHHh--CCC--EEEEE
Q psy14904 83 LFKYP-ISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVP--FHDNE-NSADLAEKL--GLP--IILVI 153 (233)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p--~~~~~-~~~~l~~~~--~~~--vllV~ 153 (233)
.+... ..+ ...+.+.+.. ..++||+||||++|....- +...+ ....++..+ ..| +++|.
T Consensus 352 V~Q~~~~~p------------~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 352 IAQHTGADS------------ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp ECCSTTCCH------------HHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred EecccCcCH------------HHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 22111 011 1123333332 3478999999999775321 00000 011112211 123 67788
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904 154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl 209 (233)
++..+ . +.+...+.+.+ .+.+-|+|+|+.+ .. ......+.. ...++.|+.
T Consensus 420 DattG-q-~al~~ak~f~~-~~~itgvIlTKLD-~t-akgG~~lsi-~~~~~~PI~ 469 (503)
T 2yhs_A 420 DASTG-Q-NAVSQAKLFHE-AVGLTGITLTKLD-GT-AKGGVIFSV-ADQFGIPIR 469 (503)
T ss_dssp EGGGT-H-HHHHHHHHHHH-HTCCSEEEEECGG-GC-SCCTHHHHH-HHHHCCCEE
T ss_pred cCccc-H-HHHHHHHHHHh-hcCCCEEEEEcCC-Cc-ccccHHHHH-HHHHCCCEE
Confidence 76543 2 23333444432 2456689999998 32 222333443 334688876
No 57
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=98.40 E-value=1.7e-06 Score=76.92 Aligned_cols=175 Identities=13% Similarity=0.077 Sum_probs=95.1
Q ss_pred ceeEEEE-eCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee--------ecCcc------cCCCCCCccchHHHHHHHHhC
Q psy14904 6 FLHYFIT-GTNTNIGKTIISCALLSEFKKRGISCIGMKPI--------ASGAY------LNNKNKIWFNEDVNLLNKYSN 70 (233)
Q Consensus 6 ~~~i~i~-~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~--------~~~~~------~~~~~~~l~~~d~~~~~~~~~ 70 (233)
+|.|+|+ |+-+++||+++++.|++.|+++|++|..+|++ ...+. ..+ ..+-.+.|........+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~-dg~e~~~~~~~~~~~~~ 81 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTE-DGAETDLDLGHYERFIR 81 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECT-TSCEECTHHHHHHHHCS
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCCccCcccCCCeEECC-CCCeehhhhccceeeec
Confidence 5899999 99999999999999999999999999999965 12221 011 01111223333333333
Q ss_pred CCcccccceeeeeecCCCChhhhhhhcCCCC----C-----HHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHH
Q psy14904 71 SLYEFTKLINPYLFKYPISPYTSSNLENRII----N-----TSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADL 141 (233)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l 141 (233)
.......++ ........-...++.+... . .+.+.+.+++++++||+||||++|...+ + ...-.++.
T Consensus 82 ~~l~~~~~~---~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~d~~i~e~~gt~~d-i-~~~~~~~~ 156 (545)
T 1s1m_A 82 TKMSRRNNF---TTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGD-I-ESLPFLEA 156 (545)
T ss_dssp SCCCGGGEE---EHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTS-S-TTHHHHHH
T ss_pred eeecCCCCe---eccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHhccCCEEEEECCCChhh-h-hChHHHHH
Confidence 221110111 1000000001112223222 2 2446888889999999999999887632 1 12222333
Q ss_pred HHH----hC-CCEEEEEcC--------CCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 142 AEK----LG-LPIILVIDL--------KIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 142 ~~~----~~-~~vllV~~~--------~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+.. .+ ..++++--. +.-..+-+.-+++.++..|+..-|+|+....
T Consensus 157 ~~q~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R~~~ 214 (545)
T 1s1m_A 157 IRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDR 214 (545)
T ss_dssp HHHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESS
T ss_pred HHHHhHhhCcCcEEEEEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEeCCC
Confidence 322 22 123333221 1101122445677888888888888876654
No 58
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=98.36 E-value=2.2e-06 Score=76.16 Aligned_cols=176 Identities=12% Similarity=0.094 Sum_probs=95.5
Q ss_pred CceeEEEE-eCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee--------ecCcc------cCCCCCCccchHHHHHHHHh
Q psy14904 5 NFLHYFIT-GTNTNIGKTIISCALLSEFKKRGISCIGMKPI--------ASGAY------LNNKNKIWFNEDVNLLNKYS 69 (233)
Q Consensus 5 ~~~~i~i~-~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~--------~~~~~------~~~~~~~l~~~d~~~~~~~~ 69 (233)
|+|.|+|+ |+-+++||+++++.|++.|+++|++|..+|++ ...+. ..+ ..+-.+-|.....+..
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~-dg~e~~~~~g~~~~~~ 89 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTA-DGAETDLDIGHYERFL 89 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECT-TCCEECTHHHHHHHHH
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCccccCcccCCceEECC-CCceehhhhccHHhcC
Confidence 46899999 99999999999999999999999999999964 11121 011 0111122333333333
Q ss_pred CCCcccccceeeeeecCCCChhhhhhhcCCCC---------CHHHHHHHHHHhhc--CCCeEEEeccCcccCccCCCCch
Q psy14904 70 NSLYEFTKLINPYLFKYPISPYTSSNLENRII---------NTSHIINCYNYLSN--LTDVIILEGIGGFSVPFHDNENS 138 (233)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~--~~D~vlID~~~g~~~p~~~~~~~ 138 (233)
.+......++. .......-...++.+... -.+.+.+.++++++ +||+||||++|...+ + +.+-.
T Consensus 90 ~~~l~~~~~~~---~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~i~e~~gt~~d-i-~~~~~ 164 (550)
T 1vco_A 90 DMDLSRGNNLT---TGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEIVVVEVGGTVGD-I-ESLPF 164 (550)
T ss_dssp TSCCCGGGEEE---HHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTS-S-TTHHH
T ss_pred CcccCCCCCee---ccEEchhhhhhhcccccccCceEEhhHHHHHHHHHHHHHhcccCCCEEEEECCCChhH-h-hhHHH
Confidence 32211101110 000000000112222211 13456788888888 999999999877642 1 12223
Q ss_pred HHHHHH----hC-CCEEEEEcC--------CCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 139 ADLAEK----LG-LPIILVIDL--------KIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 139 ~~l~~~----~~-~~vllV~~~--------~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
++.+.. .+ ..++++--. +....+-+..+++.++..++..-|+|+....
T Consensus 165 ~~~~rq~~~~~~~~~~~~~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR~~~ 225 (550)
T 1vco_A 165 LEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSAR 225 (550)
T ss_dssp HHHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESS
T ss_pred HHHHHHHhHhhCcCCEEEEEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEeCCC
Confidence 333322 22 123332211 1111223455777888888888888887654
No 59
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.11 E-value=3.8e-06 Score=72.81 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=35.8
Q ss_pred CCceeEEEEeCCC---CCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 4 KNFLHYFITGTNT---NIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 4 ~~~~~i~i~~~kg---gvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
++.|+|+|||..+ |.||||++.|||.+|++.|+||+++
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi 95 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC 95 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE
Confidence 3578999999999 9999999999999999999999986
No 60
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.11 E-value=1.4e-05 Score=60.76 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|++++.|+|. .|+||||+...|+..+..+|++|..++
T Consensus 4 ~~~~~i~i~G~-sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 4 TMIPLLAFAAW-SGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp -CCCEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcceEEEEEeC-CCCCHHHHHHHHHHhccccCCceeEEe
Confidence 35788999996 899999999999999999999999988
No 61
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.90 E-value=0.00013 Score=61.76 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=32.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|++. +|+||||+|.+++..++++|.+|++++
T Consensus 63 G~ii~I~G~-pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 63 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 346777765 999999999999999999999999998
No 62
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.87 E-value=0.00021 Score=60.10 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=33.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..+++++| ++|+||||+..+|+..+...|.+|.+++
T Consensus 55 ~~~~i~i~G-~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 55 NTLRLGVTG-TPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CSEEEEEEE-CTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEc-CCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 457889998 5999999999999999999999999987
No 63
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.75 E-value=0.00036 Score=59.26 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|++. +|+||||++.+++...++.|.+|++++
T Consensus 74 G~li~I~G~-pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 74 GRITEIYGP-ESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcC-CCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 356777776 999999999999999999999999998
No 64
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.73 E-value=0.00056 Score=53.05 Aligned_cols=33 Identities=15% Similarity=0.001 Sum_probs=28.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|+|. +|+||||++..++. ..|.+|++++
T Consensus 20 G~~~~i~G~-~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGP-YASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECS-TTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECC-CCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 346777777 99999999999998 6788999987
No 65
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.61 E-value=0.00082 Score=61.90 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=53.9
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN 194 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~ 194 (233)
+.|++.||||||... +. .......... .-+++|.++..+...++....+.+...+++++ +|+||++ ......+
T Consensus 80 ~~~~i~liDTPG~~d--f~--~~~~~~l~~a-D~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD-~~~~~~~ 152 (704)
T 2rdo_7 80 EPHRINIIDTPGHVD--FT--IEVERSMRVL-DGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMD-RMGANFL 152 (704)
T ss_pred CceeEEEEeCCCccc--hH--HHHHHHHHHC-CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCC-cccccHH
Confidence 468999999997632 11 0111222223 35788888776544445555566666788855 7899998 3333345
Q ss_pred hhHHHHHhhcCCCce
Q psy14904 195 ENYIELTKYLNVTPL 209 (233)
Q Consensus 195 ~~~~~l~~~~~~pvl 209 (233)
...+.+++.++.+.+
T Consensus 153 ~~~~~l~~~l~~~~~ 167 (704)
T 2rdo_7 153 KVVNQIKTRLGANPV 167 (704)
T ss_pred HHHHHHHHHhCCCce
Confidence 677788877775443
No 66
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.58 E-value=0.00098 Score=56.19 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=32.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|.|. +|+||||++.+++...++.|.+|++++
T Consensus 61 G~iv~I~G~-pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 61 GRVIEIYGP-ESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 456788887 999999999999999999999999998
No 67
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.49 E-value=0.00015 Score=55.20 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+.|+|+|. +|+||||++..|+..|...|+++.+++
T Consensus 1 M~~I~i~G~-~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 1 MKIGIVTGI-PGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 467999999 999999999999999998898887774
No 68
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.47 E-value=0.0018 Score=54.66 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=33.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|.|. +|+||||++.+++..++..|.+|++++
T Consensus 61 G~i~~I~Gp-pGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 61 GRIVEIFGQ-ESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp TEEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 357888888 999999999999999999999999998
No 69
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.40 E-value=0.0023 Score=53.11 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=30.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
++.|.|. +|+||||+++.++...+++ |.+|+++|
T Consensus 30 iteI~G~-pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGP-SKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEES-SSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 5677887 9999999999999999887 88999998
No 70
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.38 E-value=0.0016 Score=58.20 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=60.7
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN 194 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~ 194 (233)
++|-+=||||||... +. ....-+....+.+++|+++..|--.++....+.+.+.+++.+ +++||++ .......
T Consensus 98 ~~~~iNlIDTPGHvD--F~---~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~D-r~~ad~~ 170 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQD--FS---EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMD-REALHPL 170 (548)
T ss_dssp TTEEEEEECCCCGGG--CS---HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTT-SCCCCHH
T ss_pred CCEEEEEEeCCCcHH--HH---HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEeccc-chhcchh
Confidence 357789999998752 11 122223333346888889887766677778888889999955 7899999 3334456
Q ss_pred hhHHHHHhhcCCCce
Q psy14904 195 ENYIELTKYLNVTPL 209 (233)
Q Consensus 195 ~~~~~l~~~~~~pvl 209 (233)
..++.+++.++..+.
T Consensus 171 ~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 171 DVMADIEQHLQIECA 185 (548)
T ss_dssp HHHHHHHHHHTSEEE
T ss_pred HhhhhhhhhcCCceE
Confidence 777888887775443
No 71
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.37 E-value=0.00033 Score=53.99 Aligned_cols=39 Identities=18% Similarity=-0.004 Sum_probs=35.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
+.++++++|. .|+||||.++.++..+..+|++|++++|.
T Consensus 7 ~g~i~v~~G~-mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGP-MYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3567888888 89999999999999999999999999965
No 72
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.33 E-value=0.00034 Score=55.24 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=34.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
+...++++|. .|+||||.+..++..+..+|++|++++|.
T Consensus 11 ~G~i~litG~-mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 11 IGWIEFITGP-MFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp CCEEEEEECS-TTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CcEEEEEECC-CCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 3457777777 99999999999999999999999999854
No 73
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.32 E-value=0.00017 Score=54.54 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=32.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||++++|+|. .|+||||++..|+..+...|+++..++
T Consensus 1 m~~~v~IvG~-SGsGKSTL~~~L~~~~~~~g~~~G~I~ 37 (171)
T 2f1r_A 1 MSLILSIVGT-SDSGKTTLITRMMPILRERGLRVAVVK 37 (171)
T ss_dssp --CEEEEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHHhhhcCCceEEEE
Confidence 4688999995 899999999999999999999998887
No 74
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.31 E-value=0.00042 Score=52.66 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=32.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...|.++|. +|+||||++..|+..+...|+++.+++
T Consensus 13 ~~~i~l~G~-~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGL-PGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 457888888 999999999999999999999998886
No 75
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.27 E-value=0.00037 Score=56.16 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=32.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+|+.|.|+|. +|+||||++..|+..|...|+.+.+++
T Consensus 3 ~~~lIvl~G~-pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 3 DIMLIILTGL-PGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEEEcC-CCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3668999999 999999999999999998999888665
No 76
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.26 E-value=0.00045 Score=53.45 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=31.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|.|+|. .|+||||++..|+..|...|++|..++
T Consensus 9 ~~~I~l~G~-~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLEGV-DRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 457999999 999999999999999999999885554
No 77
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.26 E-value=0.00051 Score=52.49 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=33.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
++++++|. .|+||||++..++..+..+|++|++++|.
T Consensus 4 ~i~vi~G~-~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGP-MYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 47888888 99999999999999999999999999854
No 78
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.09 E-value=0.0006 Score=52.51 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=32.4
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+..+|+|+|. .|+||||++..|+..+...|..+.++|
T Consensus 23 ~~g~~i~l~G~-sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 23 QKGCVIWVTGL-SGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp SCCEEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 44678999999 999999999999999997787766666
No 79
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.08 E-value=0.00077 Score=51.99 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=28.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++..+|. |.||||.|+++|...+.+|+||+++.
T Consensus 30 ~i~v~tG~--GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 30 IIIVFTGN--GKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CEEEEESS--SSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34555554 69999999999999999999999985
No 80
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.06 E-value=0.0055 Score=56.30 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=52.2
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.||||||... +. .......... .-+++|.++..+...+.....+.+...+++++ +|+||++ ........
T Consensus 76 ~~~i~liDTPG~~d--f~--~~~~~~l~~a-D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD-~~~~~~~~ 148 (691)
T 1dar_A 76 DHRINIIDTPGHVD--FT--IEVERSMRVL-DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMD-KTGADLWL 148 (691)
T ss_dssp TEEEEEECCCSSTT--CH--HHHHHHHHHC-SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTT-STTCCHHH
T ss_pred CeEEEEEECcCccc--hH--HHHHHHHHHC-CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCC-cccCCHHH
Confidence 67899999997632 10 0112222333 35778888765433344445555667788855 7899998 33333456
Q ss_pred hHHHHHhhcCCCc
Q psy14904 196 NYIELTKYLNVTP 208 (233)
Q Consensus 196 ~~~~l~~~~~~pv 208 (233)
..+.+++.++.+.
T Consensus 149 ~~~~l~~~l~~~~ 161 (691)
T 1dar_A 149 VIRTMQERLGARP 161 (691)
T ss_dssp HHHHHHHTTCCCE
T ss_pred HHHHHHHHhCCCc
Confidence 6778888777543
No 81
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.03 E-value=0.00065 Score=51.51 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=25.7
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
|-.+|++.|.|+|. +|+||||++..|+..+
T Consensus 1 m~~~~~~~I~l~G~-~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 1 MEKSKPNVVFVLGG-PGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCCCCEEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CCCCcCcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 55566788999999 9999999999998876
No 82
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.97 E-value=0.0015 Score=50.41 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|+|+|. .|+||||++..|+..|...++++-.+.
T Consensus 10 ~~~I~l~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFEGL-DRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 357999999 999999999999999998898885544
No 83
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.97 E-value=0.0014 Score=51.23 Aligned_cols=39 Identities=21% Similarity=0.052 Sum_probs=34.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
+.++.+++|. -|+||||.++.++..+..+|++|++++|.
T Consensus 27 ~G~l~vitG~-MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 27 NGWIEVICGS-MFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp SCEEEEEECS-TTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 4467778887 89999999999999999999999999964
No 84
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.97 E-value=0.0031 Score=52.96 Aligned_cols=36 Identities=22% Similarity=0.082 Sum_probs=29.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
..++.|+|. +|+|||+++.+++...+. .|.+|++++
T Consensus 122 G~i~~I~G~-~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 122 MAITEAFGE-FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SEEEEEECC-TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 346777777 999999999999987554 578999998
No 85
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.95 E-value=0.0012 Score=50.12 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=30.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|.|+|. .|+||||++..|+..|...|+.+...|
T Consensus 2 ~I~l~G~-~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGI-DGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5888998 999999999999999988899887665
No 86
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.95 E-value=0.014 Score=53.69 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=57.3
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
+|-+=||||||... + ..-..-+....+.+++|+++..|--.++....+.+.+.+++.+ +++||++ ......+.
T Consensus 84 ~~~iNlIDTPGHvD--F---~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiD-r~~a~~~~ 156 (709)
T 4fn5_A 84 NYRVNVIDTPGHVD--F---TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMD-RQGANFLR 156 (709)
T ss_dssp CEEEEEECCCSCTT--C---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSS-STTCCHHH
T ss_pred CEEEEEEeCCCCcc--c---HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEcccc-ccCccHHH
Confidence 46678999998752 1 1122223333457888899887766677778888888899954 7899999 32333456
Q ss_pred hHHHHHhhcCCCc
Q psy14904 196 NYIELTKYLNVTP 208 (233)
Q Consensus 196 ~~~~l~~~~~~pv 208 (233)
..+++++.++..+
T Consensus 157 ~~~ei~~~l~~~~ 169 (709)
T 4fn5_A 157 VVEQIKKRLGHTP 169 (709)
T ss_dssp HHHHHHHHHCSCE
T ss_pred HHHHhhhhcccce
Confidence 6777777766433
No 87
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.94 E-value=0.017 Score=51.31 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.|+||||... +.. ........ ..-+++|.++..+...+.....+.++..+++++ +|+||++ .......+
T Consensus 81 ~~~i~liDTPG~~d--f~~--~~~~~l~~-aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~D-l~~~~~~~ 153 (528)
T 3tr5_A 81 DYLINLLDTPGHAD--FTE--DTYRTLTA-VDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMD-RDTRPSIE 153 (528)
T ss_dssp TEEEEEECCCCSTT--CCH--HHHHGGGG-CSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTT-SCCSCHHH
T ss_pred CEEEEEEECCCchh--HHH--HHHHHHHh-CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCC-CccccHHH
Confidence 57899999987531 110 11111122 235788888776544445556666777788854 7899998 32223345
Q ss_pred hHHHHHhhcCCCce
Q psy14904 196 NYIELTKYLNVTPL 209 (233)
Q Consensus 196 ~~~~l~~~~~~pvl 209 (233)
.++.+++.++.++.
T Consensus 154 ~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 154 LLDEIESILRIHCA 167 (528)
T ss_dssp HHHHHHHHHCCEEE
T ss_pred HHHHHHHhhCCCce
Confidence 56777777776443
No 88
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.92 E-value=0.00068 Score=51.27 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.9
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++++.|.++|. +|+||||++..|+..|
T Consensus 3 ~~~~~i~l~G~-~GsGKst~a~~La~~l 29 (185)
T 3trf_A 3 KNLTNIYLIGL-MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp --CCEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 45678999999 9999999999999877
No 89
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.0011 Score=51.15 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=28.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
+.|+|+|. +|+||||++..|+..|...| ++...
T Consensus 5 ~~I~i~G~-~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGI-DGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred eEEEEEcC-CCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 57888888 99999999999999998777 66443
No 90
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.91 E-value=0.0011 Score=50.09 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=29.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|+|+|. +|+||||++..|+..|..+|.+.-+++
T Consensus 4 ~~I~i~G~-~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGV-PGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 47889998 999999999999999988885554444
No 91
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.91 E-value=0.0013 Score=49.99 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=29.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|.|+|. .|+||||++..|+..|...|++|...+
T Consensus 2 ~I~l~G~-~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGI-DGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 5888988 999999999999999999999987654
No 92
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.0014 Score=51.76 Aligned_cols=36 Identities=28% Similarity=0.193 Sum_probs=32.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-.++.|+|. +|+||||++.+++..+++.|.+|+++.
T Consensus 23 G~~~~i~G~-~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGG-PGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEEC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 347788888 999999999999999999999999987
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.00099 Score=50.25 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=31.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
.+.+++.|. +|+||||++..++..+. ..|+++.++.
T Consensus 38 g~~~~l~G~-~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 38 GKGLTFVGS-PGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CCEEEECCS-SSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 467888888 99999999999999998 7898888865
No 94
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.88 E-value=0.0018 Score=48.79 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=32.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+...|.++|. .|+||||++..|+..|...|+++..+|
T Consensus 4 ~g~~i~l~G~-~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGL-SGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3567889988 999999999999999988898887766
No 95
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.87 E-value=0.0075 Score=53.64 Aligned_cols=88 Identities=19% Similarity=0.080 Sum_probs=51.6
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN 194 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~ 194 (233)
.++.+.|+||||... +. .......... .-+++|.++..+...+.....+.++..+++ .-+|+||++ .......
T Consensus 80 ~~~~i~liDTPG~~d--f~--~~~~~~l~~a-D~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~D-l~~~~~~ 152 (529)
T 2h5e_A 80 HDCLVNLLDTPGHED--FS--EDTYRTLTAV-DCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLD-RDIRDPM 152 (529)
T ss_dssp TTEEEEEECCCCSTT--CC--HHHHHGGGGC-SEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTT-SCCSCHH
T ss_pred CCeEEEEEECCCChh--HH--HHHHHHHHHC-CEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcC-CccccHH
Confidence 367899999997631 11 0011111222 357888887655434455555666667888 457899998 3222234
Q ss_pred hhHHHHHhhcCCCce
Q psy14904 195 ENYIELTKYLNVTPL 209 (233)
Q Consensus 195 ~~~~~l~~~~~~pvl 209 (233)
+..+.+++.++.+..
T Consensus 153 ~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 153 ELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 556777777665543
No 96
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.87 E-value=0.00062 Score=55.92 Aligned_cols=38 Identities=16% Similarity=0.410 Sum_probs=30.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++..+|+|+|. .|+||||+|..|+..|...|.++.+++
T Consensus 3 ~~~~iIgItG~-sGSGKSTva~~L~~~lg~~~~~~~vI~ 40 (290)
T 1a7j_A 3 KKHPIISVTGS-SGAGTSTVKHTFDQIFRREGVKAVSIE 40 (290)
T ss_dssp TTSCEEEEESC-C---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECC-CCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence 34568999998 999999999999999988888888887
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.87 E-value=0.0013 Score=50.47 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=31.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+++.|. +|+|||+++..++..+.++|.++.++.
T Consensus 55 ~~~~l~G~-~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS-FGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67888888 999999999999999999999998875
No 98
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.84 E-value=0.0014 Score=54.16 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=33.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..+++|.|. +|+||||+...||..+...+.+|.+..
T Consensus 101 ~g~vi~lvG~-nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGV-NGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECS-TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECC-CCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3568999998 899999999999999999899999875
No 99
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.83 E-value=0.031 Score=46.02 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=45.4
Q ss_pred CCCeEEEeccCcccCccCCCC-------chHHHHHHhCCCEEEEEcCCCC-cHHHHHHHHHHHHhCCCcEEEEEEcccCC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNE-------NSADLAEKLGLPIILVIDLKIG-CINNALLSLEAINSRGLKLIGWVANHTQI 187 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~-------~~~~l~~~~~~~vllV~~~~~~-~~~~~~~~~~~l~~~~~~i~GiVlN~~~~ 187 (233)
++.++++||||-.. +-.... ......... .-+++|.+.... +..+....++.+++.+.+++ +|+||++.
T Consensus 58 ~~~i~lvDTPG~~~-~~~~~~l~~~~~~~~~~~l~~a-D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl 134 (308)
T 3iev_A 58 EAQIIFLDTPGIYE-PKKSDVLGHSMVEIAKQSLEEA-DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDK 134 (308)
T ss_dssp TEEEEEEECCCCCC-CCTTCHHHHHHHHHHHHHHHHC-SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGG
T ss_pred CCeEEEEECcCCCc-cccchhHHHHHHHHHHHHhhcC-CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccC
Confidence 56788999976432 110000 111122223 346677776543 33333322566666677744 77999882
Q ss_pred C-chhhhhhhHHHHHhhcC--CCce
Q psy14904 188 V-DTLFANENYIELTKYLN--VTPL 209 (233)
Q Consensus 188 ~-~~~~~~~~~~~l~~~~~--~pvl 209 (233)
. .........+.+++.++ .+++
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhccCCCeEE
Confidence 1 12223344555666554 4444
No 100
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.80 E-value=0.0023 Score=49.26 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=32.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..+|.|+|. .|+||||++..|+..+...|.+|.+.+
T Consensus 21 ~~~~i~i~G~-~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 21 GRLVLGIDGL-SRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSEEEEEEEC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 3568999998 999999999999999988888888774
No 101
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.77 E-value=0.00099 Score=49.69 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
||+.|.|+|. .|+||||++..|+..|
T Consensus 1 m~~~I~l~G~-~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGA-RGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEECC-CCCCHHHHHHHHHHHh
Confidence 3578999998 9999999999998877
No 102
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.74 E-value=0.011 Score=50.75 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=29.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
..++.|+|. +|+||||++..|+..... .+.++++++
T Consensus 178 Gei~~I~G~-sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 178 GSITELFGE-FRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CcEEEEEcC-CCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 357888888 999999999998866554 357899987
No 103
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.73 E-value=0.001 Score=49.90 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+|+.|+|+|. +|+||||++..||..+
T Consensus 3 ~m~~i~i~G~-~GsGKsTla~~La~~l 28 (175)
T 1via_A 3 LAKNIVFIGF-MGSGKSTLARALAKDL 28 (175)
T ss_dssp --CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 3567999998 9999999999999876
No 104
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.69 E-value=0.0021 Score=53.24 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=30.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|++. +|+||||++.++|...+.+|.+|++|.
T Consensus 69 ~l~li~G~-pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAAR-PSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeC-CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35666666 999999999999999999999999986
No 105
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.68 E-value=0.0014 Score=52.33 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=30.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-----GISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-----G~~Vl~~d 42 (233)
++.+|+|+|. .|+||||+|..|+..|... |+++.+++
T Consensus 21 ~~~iI~I~G~-~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~ 62 (252)
T 1uj2_A 21 EPFLIGVSGG-TASGKSSVCAKIVQLLGQNEVDYRQKQVVILS 62 (252)
T ss_dssp CCEEEEEECS-TTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEE
T ss_pred CcEEEEEECC-CCCCHHHHHHHHHHHhhhhcccccCCceEEEe
Confidence 4568999999 9999999999999887543 55677776
No 106
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.67 E-value=0.0013 Score=48.81 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
|+.|+|+|. +|+||||++..|+..+ |+.+
T Consensus 1 M~~i~l~G~-~GsGKsT~~~~L~~~l---~~~~ 29 (173)
T 3kb2_A 1 MTLIILEGP-DCCFKSTVAAKLSKEL---KYPI 29 (173)
T ss_dssp -CEEEEECS-SSSSHHHHHHHHHHHH---CCCE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh---CCee
Confidence 457899998 9999999999988776 5544
No 107
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.67 E-value=0.0014 Score=50.45 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+++++|+|+|. .|+||||++..|+..+
T Consensus 16 ~~~~~I~l~G~-~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 16 RFPGSIVVMGV-SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CCSSCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 34678999999 9999999999999887
No 108
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.67 E-value=0.0024 Score=55.53 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=31.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|++. +|+||||++.++|...+.+|.+|++|.
T Consensus 198 ~liiIaG~-pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAAR-PSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CEEEEEEC-SSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEEeC-CCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 45777777 999999999999999999999999986
No 109
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.66 E-value=0.0026 Score=49.28 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=32.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
+.+.|+|.|. .|+||||++..|+..|. ..|+++.+++
T Consensus 24 ~~~~i~~~G~-~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGLTIWLTGL-SASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCEEEEEECS-TTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3467888888 99999999999999998 7898888876
No 110
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.65 E-value=0.0036 Score=56.96 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
+|-+=||||||... + .....-+....+.+++|+++..|--.++....+.+.+.+++.+ +++||++ ........
T Consensus 66 ~~~iNlIDTPGH~D--F---~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmD-r~~a~~~~ 138 (638)
T 3j25_A 66 NTKVNIIDTPGHMD--F---LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKID-QNGIDLST 138 (638)
T ss_dssp SCBCCCEECCCSSS--T---HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECC-SSSCCSHH
T ss_pred CEEEEEEECCCcHH--H---HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccc-cccCCHHH
Confidence 57788999998752 1 1112222233346888888877654566777888888899965 7799998 33334456
Q ss_pred hHHHHHhhcCCCc
Q psy14904 196 NYIELTKYLNVTP 208 (233)
Q Consensus 196 ~~~~l~~~~~~pv 208 (233)
..+.+++.++.++
T Consensus 139 ~~~~i~~~l~~~~ 151 (638)
T 3j25_A 139 VYQDIKEKLSAEI 151 (638)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHHHhCCCc
Confidence 7788888776543
No 111
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.65 E-value=0.0018 Score=51.01 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=32.2
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeE
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIG 40 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~ 40 (233)
..+.+.|.|.|. .|+||||++..|+..|.. +|++|.+
T Consensus 18 ~~~~~~i~~~G~-~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 18 GPGSMFITFEGI-DGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp -CCCEEEEEECS-TTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCCeEEEEECC-CCCCHHHHHHHHHHHHhhccCceeeE
Confidence 344567888888 999999999999999999 9999987
No 112
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.65 E-value=0.0028 Score=52.28 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=33.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..++++.|. .|+||||+...||..+...+.+|.+..
T Consensus 99 ~g~vi~lvG~-nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGV-NGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999998 999999999999999999888998864
No 113
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.64 E-value=0.00072 Score=52.32 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=30.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|+|.|. .|+||||++..|+..|...|++|.+++
T Consensus 2 ~I~i~G~-~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGV-DGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEE-EEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6888888 999999999999999998899988775
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.63 E-value=0.0029 Score=49.38 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=32.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.|+|. +|+||||++..++..+...|+++.+++
T Consensus 52 ~~~~ll~G~-~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 52 VQAIYLWGP-VKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp CSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 467888888 999999999999999999999999887
No 115
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.59 E-value=0.0032 Score=52.78 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=31.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|++. +|+||||++.++|..++..|.+|++|.
T Consensus 47 ~LiiIaG~-pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGAR-PSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CEEEEEEC-TTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEeC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45677777 999999999999999999999999986
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.59 E-value=0.0035 Score=49.58 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=34.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
+.++.+++|. -|+||||-++.++.....+|++|++++|.
T Consensus 18 ~g~l~v~~G~-MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGP-MFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp CCEEEEEECC-TTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred ceEEEEEECC-CCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4567777777 89999999999999999999999999965
No 117
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.58 E-value=0.0029 Score=52.30 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=32.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
.+.+++.|. +|+|||+++..++..+. ++|++|.++.
T Consensus 152 ~~~lll~G~-~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGD-MGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 467889988 99999999999999999 9999998875
No 118
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.56 E-value=0.011 Score=59.92 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=33.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|+ +|+|||++|.+++....++|.+|.+++
T Consensus 1427 g~~vll~Gp-pGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1427 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TSEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 467888888 999999999999999999999999998
No 119
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.56 E-value=0.038 Score=50.76 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=50.0
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
++.+.|+||||... +. .......... .-+++|.++..+...+.....+.+...+.+++ +|+||++ ........
T Consensus 74 ~~~i~liDTPG~~d--f~--~~~~~~l~~a-D~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~D-l~~~~~~~ 146 (693)
T 2xex_A 74 GHRVNIIDTPGHVD--FT--VEVERSLRVL-DGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMD-KLGANFEY 146 (693)
T ss_dssp TEEEEEECCCCCSS--CC--HHHHHHHHHC-SEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTT-STTCCHHH
T ss_pred CeeEEEEECcCCcc--hH--HHHHHHHHHC-CEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCC-ccccchHH
Confidence 57899999987632 11 1112222333 35788888765432334444555666788855 7899998 32222345
Q ss_pred hHHHHHhhcCCC
Q psy14904 196 NYIELTKYLNVT 207 (233)
Q Consensus 196 ~~~~l~~~~~~p 207 (233)
..+.+++.++.+
T Consensus 147 ~~~~l~~~l~~~ 158 (693)
T 2xex_A 147 SVSTLHDRLQAN 158 (693)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHhCCC
Confidence 667777766654
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.55 E-value=0.003 Score=49.16 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++.|+|. +|+||||++..++..++..|.+|+++.
T Consensus 23 G~~~~i~G~-~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGE-PGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECS-TTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 357888888 999999999999999988888999986
No 121
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.54 E-value=0.0019 Score=49.43 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=27.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|+|+|. .|+||||++..|+..| .|+++..++
T Consensus 4 ~~~I~l~G~-~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGL-DKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CcEEEEEcC-CCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 457999999 9999999999998877 467776654
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.53 E-value=0.0023 Score=47.05 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+++.|. .|+||||++..++..+...|+++.+++
T Consensus 36 g~~~~l~G~-~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGE-EGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESS-STTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 357888888 999999999999999988898888876
No 123
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.52 E-value=0.002 Score=47.97 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=24.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
-|++|.|+|. .|+||||++..|+..| |+++
T Consensus 6 ~~~~i~l~G~-~GsGKSTva~~La~~l---g~~~ 35 (168)
T 1zuh_A 6 HMQHLVLIGF-MGSGKSSLAQELGLAL---KLEV 35 (168)
T ss_dssp --CEEEEESC-TTSSHHHHHHHHHHHH---TCCE
T ss_pred ccceEEEECC-CCCCHHHHHHHHHHHh---CCCE
Confidence 4789999999 9999999999998877 5544
No 124
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.52 E-value=0.0022 Score=50.02 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=22.8
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
||.+ ..+|+|+|. .|+||||++..|+..+
T Consensus 1 mm~~-~~~i~i~G~-~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 1 MTAI-APVITIDGP-SGAGKGTLCKAMAEAL 29 (227)
T ss_dssp --CC-SCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CCCC-CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 5554 347999999 9999999999888766
No 125
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=96.50 E-value=0.024 Score=45.17 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=34.9
Q ss_pred CceeEEEEeCC-CCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTN-TNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~k-ggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+||-|+|||.= +|.||=.+|+.|+..|..+|++|..+|
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~K 60 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIK 60 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCE
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEe
Confidence 58999999965 899999999999999999999999865
No 126
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.50 E-value=0.0016 Score=49.98 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=25.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|++|+|+|. .|+||||++..|+. + |..+...|
T Consensus 1 m~~i~i~G~-~GsGKSTl~~~L~~-~---g~~~i~~d 32 (204)
T 2if2_A 1 MKRIGLTGN-IGCGKSTVAQMFRE-L---GAYVLDAD 32 (204)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHH-T---TCEEEEHH
T ss_pred CeEEEEECC-CCcCHHHHHHHHHH-C---CCEEEEcc
Confidence 357999999 99999999988887 4 76665544
No 127
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0039 Score=52.66 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=33.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..++++.|. .|+||||+...||..+...+.+|.+..
T Consensus 156 ~g~vi~lvG~-nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGV-NGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcC-CCChHHHHHHHHHhhccccCCEEEEec
Confidence 3568999998 999999999999999998888998864
No 128
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.0034 Score=48.67 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=30.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+++.|+|+|. +|+||||+..+|+..+... +++.+++
T Consensus 29 ~~~~i~i~G~-~g~GKTTl~~~l~~~~~~~-~~~~~i~ 64 (221)
T 2wsm_A 29 GTVAVNIMGA-IGSGKTLLIERTIERIGNE-VKIGAML 64 (221)
T ss_dssp TCEEEEEEEC-TTSCHHHHHHHHHHHHTTT-SCEEEEE
T ss_pred CceEEEEEcC-CCCCHHHHHHHHHHHhccC-CeEEEEe
Confidence 4678899987 9999999999999998655 7888886
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.39 E-value=0.0023 Score=48.32 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.++|.|+|. +|+||||++..|+..|
T Consensus 2 ~~~I~l~G~-~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGL-PGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHc
Confidence 346899998 9999999999998877
No 130
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.37 E-value=0.0071 Score=46.52 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=35.0
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
.+.+.++++|+ .|+||||-.+..+..+..+|++|++++|.
T Consensus 18 ~~g~l~fiyG~-MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 18 TRGQIQVILGP-MFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp -CCEEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CceEEEEEECC-CCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 35678889998 99999999999999999999999999964
No 131
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.003 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+++.|+++|. +|+||||++..|+..+
T Consensus 24 ~~~~i~l~G~-~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGY-MGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 4678999999 9999999999999888
No 132
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.34 E-value=0.0058 Score=49.85 Aligned_cols=36 Identities=11% Similarity=0.011 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
-.++.|+|. +|+||||++..|+..++.. |.+|+++.
T Consensus 35 G~~~~i~G~-~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSG-SGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEES-TTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeC-CCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357888888 9999999999999999876 88999886
No 133
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.31 E-value=0.0058 Score=47.71 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|.|.|. .|+||||.+..|+..|..+|++|....
T Consensus 6 g~~i~~eG~-~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGP-EGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECS-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 357888888 999999999999999999999997765
No 134
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.30 E-value=0.005 Score=46.58 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|+|+|. +|+||||++..|+..|
T Consensus 5 ~~~I~l~G~-~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGH-PATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHc
Confidence 457889998 9999999999999877
No 135
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.28 E-value=0.0027 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.|.++|. +|+||||++..|+..|
T Consensus 4 ~~i~l~G~-~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGG-SSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 57888888 9999999999998876
No 136
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.27 E-value=0.044 Score=46.86 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=40.1
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
.+.+.|+||||.-. +. ......+... .-+++|.++..+...+....+..++..+++.+-+++||++
T Consensus 74 ~~~~~iiDtpG~~~--f~--~~~~~~~~~a-D~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~D 139 (405)
T 2c78_A 74 KRHYSHVDCPGHAD--YI--KNMITGAAQM-DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139 (405)
T ss_dssp SCEEEEEECCCSGG--GH--HHHHHHHTTC-SSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred CeEEEEEECCChHH--HH--HHHHHHHHHC-CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcc
Confidence 57899999986531 10 0111112222 3577888876655455556666666777774457899998
No 137
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.25 E-value=0.0033 Score=48.16 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++++.|+|+|. .|+||||++..|+..+
T Consensus 13 ~~~~~I~l~G~-~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGG-PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 45778999998 9999999999998765
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.23 E-value=0.0053 Score=47.10 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.++|+|+|. .|+||||++..|+..+
T Consensus 28 ~g~~i~l~G~-~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGV-SGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHhh
Confidence 3468999998 9999999999999887
No 139
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.032 Score=49.11 Aligned_cols=120 Identities=17% Similarity=0.219 Sum_probs=69.2
Q ss_pred CceeEEEEeCC-CCCcHHHHHHHHHHHHHHcCCeeeEEe--eee-cCcc-----------cCCCCCCccchHHHHHHHHh
Q psy14904 5 NFLHYFITGTN-TNIGKTIISCALLSEFKKRGISCIGMK--PIA-SGAY-----------LNNKNKIWFNEDVNLLNKYS 69 (233)
Q Consensus 5 ~~~~i~i~~~k-ggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~-~~~~-----------~~~~~~~l~~~d~~~~~~~~ 69 (233)
++|-|+|||.= +|.||-.+|+.|+..|+.+|++|..+| |-. -++. ..+ ..+-.+-|...+.++.
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~gtmsp~~hgevfv~~-dg~e~dldlg~yerf~ 80 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVTE-DGAETDLDLGHYERFM 80 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSSTTCCHHHHCCCEECT-TCCEECTHHHHHHHHH
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeecCCCCCccccceEEEec-CCccccccccchhhhc
Confidence 47899999944 899999999999999999999999976 421 1110 001 0122223555556666
Q ss_pred CCCcccccceee-eeecCCCChhhhhhhcCCCC----C-----HHHHHHHHHHhh--cCCCeEEEeccCccc
Q psy14904 70 NSLYEFTKLINP-YLFKYPISPYTSSNLENRII----N-----TSHIINCYNYLS--NLTDVIILEGIGGFS 129 (233)
Q Consensus 70 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~-----~~~l~~~~~~l~--~~~D~vlID~~~g~~ 129 (233)
+.......|+.. -.|. .-+..++.|..+ . -+.+++.+.+++ .++|++|||-.|-+.
T Consensus 81 ~~~l~~~~n~ttg~iy~----~vi~ker~g~ylg~tvqviphit~eik~~i~~~~~~~~~dv~i~eiggtvg 148 (535)
T 3nva_A 81 DVNMTKYNNITAGKVYF----EVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASKINNAEITLVEIGGTVG 148 (535)
T ss_dssp CCCCCGGGEEEHHHHHH----HHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCTT
T ss_pred CCCcccccCcchhHHHH----HHHHHHhcCCcCCCeeEECCCchHHHHHHHHHhhccCCCCEEEEEeCCccc
Confidence 544322122211 0010 001123333321 1 245677777766 689999999865543
No 140
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.22 E-value=0.0042 Score=47.11 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++.|+|+|. .|+||||++..|+..+
T Consensus 9 ~~~I~l~G~-~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGG-PGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 468999999 9999999999999877
No 141
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.20 E-value=0.0046 Score=47.18 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=23.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
++.+|+|+|. .|+||||++..|+.. |..+
T Consensus 7 ~~~~I~i~G~-~GsGKST~~~~La~~----g~~~ 35 (203)
T 1uf9_A 7 HPIIIGITGN-IGSGKSTVAALLRSW----GYPV 35 (203)
T ss_dssp CCEEEEEEEC-TTSCHHHHHHHHHHT----TCCE
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHC----CCEE
Confidence 4568999999 999999999888764 6544
No 142
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.19 E-value=0.0031 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.++|+|+|. .|+||||++..|+..+
T Consensus 4 ~~~i~l~G~-~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGP-MGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECC-TTSCHHHHHHHHHHHT
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHh
Confidence 467999999 9999999999888776
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.17 E-value=0.0076 Score=46.53 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=31.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..+++|+|. .|+||||++..|+..+...|.++..+.
T Consensus 21 ~g~~v~I~G~-sGsGKSTl~~~l~~~~~~~g~~~g~v~ 57 (208)
T 3c8u_A 21 GRQLVALSGA-PGSGKSTLSNPLAAALSAQGLPAEVVP 57 (208)
T ss_dssp SCEEEEEECC-TTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 4568999999 999999999999999987776677664
No 144
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.15 E-value=0.0043 Score=47.69 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=23.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
|.+|+|+|. .|+||||++..|+. .|+.+
T Consensus 2 ~~~i~l~G~-~GsGKST~~~~La~----lg~~~ 29 (206)
T 1jjv_A 2 TYIVGLTGG-IGSGKTTIANLFTD----LGVPL 29 (206)
T ss_dssp CEEEEEECS-TTSCHHHHHHHHHT----TTCCE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHH----CCCcc
Confidence 468999999 99999999988876 47554
No 145
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.15 E-value=0.0048 Score=46.71 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSE 30 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~ 30 (233)
.+.+.|.++|. .|+||||++..|+..
T Consensus 8 ~~~~~I~l~G~-~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGT-PGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECS-TTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECC-CCCCHHHHHHHHHHh
Confidence 34568999999 999999999888876
No 146
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.14 E-value=0.0079 Score=52.22 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=30.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
..+.|++. +|+|||+++.++|...+. .|.+|++|.
T Consensus 201 ~l~ii~G~-pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAAR-PAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEeC-CCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46777777 999999999999999997 489999987
No 147
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.12 E-value=0.0044 Score=49.61 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=25.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+.|+|+|. +|+||||++..||..+ |..+.-.|
T Consensus 1 M~li~I~G~-~GSGKSTla~~La~~~---~~~~i~~D 33 (253)
T 2ze6_A 1 MLLHLIYGP-TCSGKTDMAIQIAQET---GWPVVALD 33 (253)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHH---CCCEEECC
T ss_pred CeEEEEECC-CCcCHHHHHHHHHhcC---CCeEEecc
Confidence 468899999 9999999999998876 55554333
No 148
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.12 E-value=0.01 Score=44.24 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
.+.+.|+|. +|+|||+++..++..+..
T Consensus 43 ~~~~ll~G~-~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGE-PGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECC-TTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHHHh
Confidence 356788888 999999999999999977
No 149
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.0074 Score=47.47 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=28.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH-HHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF-KKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l-~~~G~~Vl~~d 42 (233)
..+.|++. +|+|||++|.++|... .+.|.+|+++.
T Consensus 31 ~l~~i~G~-pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 31 TTVLLTGG-TGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred eEEEEEeC-CCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 35666666 9999999999998764 55688999986
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.11 E-value=0.0078 Score=52.40 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=30.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
..+.|+|. +|+||||++.+++..++. .|.+|+++.
T Consensus 204 ~liiI~G~-pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAAR-PSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46677777 999999999999999987 588999986
No 151
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=96.11 E-value=0.0045 Score=53.60 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=30.6
Q ss_pred CceeEEE---EeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFI---TGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i---~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
+.|.|.| +.+.-|.||||++.+|+.+|.+.|+++.+.
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~ 81 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT 81 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE
Confidence 3455555 457889999999999999999999998764
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.10 E-value=0.0053 Score=46.10 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|.|+|. +|+||||++..|+..+
T Consensus 11 ~~~i~i~G~-~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGT-PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeC-CCCCHHHHHHHHHHHh
Confidence 457889998 9999999999998877
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.10 E-value=0.079 Score=47.76 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=47.9
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
.|.+.|+||||...- . .......... .-+++|.++..+.-.+.......+...+++ .-+|+||++.+ ....+.
T Consensus 72 ~~~inliDTPGh~dF--~--~ev~r~l~~a-D~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~-~a~~~~ 144 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDF--S--YEVSRALAAC-EGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLP-SADVDR 144 (600)
T ss_dssp EEEEEEECCCCSGGG--H--HHHHHHHHTC-SEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTST-TCCHHH
T ss_pred eEEEEEEECCCcHhH--H--HHHHHHHHhC-CEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCcc-ccCHHH
Confidence 477889999976421 1 0111222333 357778877655333344444455567888 44789999822 222334
Q ss_pred hHHHHHhhcCCC
Q psy14904 196 NYIELTKYLNVT 207 (233)
Q Consensus 196 ~~~~l~~~~~~p 207 (233)
..+.+++.++.+
T Consensus 145 v~~el~~~lg~~ 156 (600)
T 2ywe_A 145 VKKQIEEVLGLD 156 (600)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHHhhCCC
Confidence 556677666653
No 154
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.06 E-value=0.013 Score=45.88 Aligned_cols=38 Identities=21% Similarity=0.003 Sum_probs=33.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
..+.+|+|. -|+||||..+.++..+..+|++|++++|.
T Consensus 28 G~I~vitG~-M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 28 GWIECITGS-MFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 467788888 89999999999999999999999999964
No 155
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.01 E-value=0.0043 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|+|+|. +|+||||++..|+..+
T Consensus 12 ~~~I~l~G~-~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGG-PGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 457999999 9999999999999877
No 156
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.01 E-value=0.01 Score=44.27 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++++|.|+|. .|+||||++..|+..+
T Consensus 7 ~g~~i~l~G~-~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGV-SGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcC-CCCCHHHHHHHHHHhh
Confidence 4578999999 9999999999998876
No 157
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.01 E-value=0.0095 Score=45.85 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=29.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+|=|. -|+||||.+..|+..|.++|++|.+..
T Consensus 3 I~~EG~-DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGI-DGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 566677 899999999999999999999998876
No 158
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.00 E-value=0.006 Score=47.00 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=28.3
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|-.++..+|+|+|. .|+||||++..|+..+.. ++.+++
T Consensus 1 ~~~~~~~~i~i~G~-~GsGKSTl~~~l~~~~~~---~i~~v~ 38 (211)
T 3asz_A 1 MSAPKPFVIGIAGG-TASGKTTLAQALARTLGE---RVALLP 38 (211)
T ss_dssp ----CCEEEEEEES-TTSSHHHHHHHHHHHHGG---GEEEEE
T ss_pred CCCCCcEEEEEECC-CCCCHHHHHHHHHHHhCC---CeEEEe
Confidence 44455678999999 899999999999888742 567765
No 159
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.00 E-value=0.0075 Score=46.89 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=25.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
++..|+|.|. +|+||||++..|+..| |..+.
T Consensus 4 ~~~~I~l~G~-~GsGKsT~a~~La~~l---~~~~i 34 (217)
T 3be4_A 4 KKHNLILIGA-PGSGKGTQCEFIKKEY---GLAHL 34 (217)
T ss_dssp GCCEEEEEEC-TTSSHHHHHHHHHHHH---CCEEE
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHHh---CceEE
Confidence 4557889998 9999999999999887 55543
No 160
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.98 E-value=0.012 Score=46.77 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=30.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCe-eeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGIS-CIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~-Vl~~d 42 (233)
+.|.|.|. .|+||||.+..|+..|..+|++ |.+..
T Consensus 28 ~~i~~eG~-~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 28 KFIVIEGL-EGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CEEEEEES-TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 57888888 9999999999999999999999 65554
No 161
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.98 E-value=0.007 Score=44.67 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
+|+|+|. +|+||||++..| .+.|+.+.-
T Consensus 3 ~I~l~G~-~GsGKsT~a~~L----~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGM-PGSGKSEFAKLL----KERGAKVIV 30 (179)
T ss_dssp EEEEECC-TTSCHHHHHHHH----HHTTCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHH----HHCCCcEEE
Confidence 6888888 999999999888 556877543
No 162
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.98 E-value=0.0085 Score=53.48 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=32.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...|.++|. +|+||||++..|+..|..+|+++.++|
T Consensus 372 ~~~I~l~G~-~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 372 GFCVWLTGL-PCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp CEEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEccCC-CCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 457888887 999999999999999999999988876
No 163
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.95 E-value=0.043 Score=55.77 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=32.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...+.|++. +|+||||++.++|...+++|.+|++++
T Consensus 383 G~lilI~G~-pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 383 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp TSEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CcEEEEEeC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 346677777 999999999999999999999999998
No 164
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.94 E-value=0.0098 Score=46.11 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=30.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|.+-|+|=|. -|+||||.+..|+..|. +|++|....
T Consensus 1 M~kFI~~EG~-dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFEGP-EGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEECC-TTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEECC-CCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 4567888888 89999999999999996 688888765
No 165
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.94 E-value=0.0094 Score=49.22 Aligned_cols=36 Identities=36% Similarity=0.373 Sum_probs=32.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.++|+|. +|+||||++..++..+.+.|.++.+++
T Consensus 37 ~~~lll~G~-~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGS-VGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECS-SSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 457899998 999999999999999998899998886
No 166
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.93 E-value=0.0088 Score=53.72 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=31.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP 43 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp 43 (233)
+.+.|+|. +|+||||+...++..+.+.|++|+++-|
T Consensus 205 ~~~~I~G~-pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGG-PGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 46777777 9999999999999999999999998754
No 167
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.92 E-value=0.0075 Score=47.59 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=27.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR----GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~----G~~Vl~~d 42 (233)
+.|.|.|. .|+||||.+..|+..|... |++|.+..
T Consensus 26 ~~I~~eG~-~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGI-DGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECC-C---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 46888888 9999999999999999988 99997665
No 168
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.91 E-value=0.01 Score=53.27 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=32.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcC-CeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRG-ISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G-~~Vl~~d 42 (233)
+..+|.|+|. +|+||||++..|+..|..+| +++.++|
T Consensus 395 ~~~~I~l~Gl-sGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 395 QGFTIFLTGY-MNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp CCEEEEEECS-TTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred cceEEEeecC-CCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 3457899998 99999999999999999888 8887776
No 169
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.90 E-value=0.0063 Score=45.37 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~ 29 (233)
+.|.|+|. +|+||||++..|+.
T Consensus 3 ~~I~i~G~-~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGC-PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHH
T ss_pred eEEEEecC-CCCCHHHHHHHHHh
Confidence 46888888 99999999988887
No 170
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.89 E-value=0.0068 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
...|+++|. +|+||||++..|+..+
T Consensus 4 g~~I~l~G~-~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGP-PGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 347888988 9999999999998876
No 171
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.87 E-value=0.015 Score=45.41 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=31.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d 42 (233)
.+.|.+.|. .|+||||.+..|+..|..+|+ .|.+..
T Consensus 3 g~~i~~eG~-~gsGKsT~~~~l~~~l~~~~~~~v~~~r 39 (213)
T 4tmk_A 3 SKYIVIEGL-EGAGKTTARNVVVETLEQLGIRDMVFTR 39 (213)
T ss_dssp CCEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCCcceeee
Confidence 357888888 999999999999999999998 665554
No 172
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.85 E-value=0.0067 Score=46.87 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=26.7
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHH-----HcC-CeeeEE
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFK-----KRG-ISCIGM 41 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~-----~~G-~~Vl~~ 41 (233)
.+|-++.|+|. +|+|||+.+..++..+. ++| +++.+.
T Consensus 3 ~~~mi~l~tG~-pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~ 45 (199)
T 2r2a_A 3 AMAEICLITGT-PGSGKTLKMVSMMANDEMFKPDENGIRRKVFT 45 (199)
T ss_dssp -CCCEEEEECC-TTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEE
T ss_pred cceeEEEEEeC-CCCCHHHHHHHHHHHHHhhcccccCceEEEEe
Confidence 34557788888 99999999988876665 567 444443
No 173
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.83 E-value=0.011 Score=53.57 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=32.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+...|.++|. .|+||||++..|+..|.++|+++..+|
T Consensus 51 ~g~lIvLtGl-sGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGL-SGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeC-CCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3457889998 999999999999999999999988876
No 174
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.82 E-value=0.01 Score=44.16 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=24.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
.+.+.|+|. +|+|||+++..++..+...
T Consensus 43 ~~~vll~G~-~G~GKT~la~~~~~~~~~~ 70 (187)
T 2p65_A 43 KNNPILLGD-PGVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp SCEEEEESC-GGGCHHHHHHHHHHHHHTT
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHHHhc
Confidence 456788888 9999999999999999773
No 175
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.81 E-value=0.011 Score=46.64 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=30.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
+.+.|+|.|. .|+||||++..|+..|.. |.+|...
T Consensus 25 ~g~~i~i~G~-~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGP-EGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECC-TTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcC-CCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3567888888 999999999999999988 8888654
No 176
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.81 E-value=0.011 Score=45.78 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=29.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+...|+|+|. +||||||+...|+..+... +++..++
T Consensus 37 ~~~~i~ivG~-~gvGKTtl~~~l~~~~~~~-~~~~~i~ 72 (226)
T 2hf9_A 37 GVVAFDFMGA-IGSGKTLLIEKLIDNLKDK-YKIACIA 72 (226)
T ss_dssp TCEEEEEEES-TTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred CCeEEEEEcC-CCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence 3567888888 9999999999999987655 6777766
No 177
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.80 E-value=0.006 Score=50.71 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=26.5
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+|.+.|+|+|. +|+||||++..||..+ |..+.-.|
T Consensus 2 ~~m~~~i~i~Gp-tGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 2 SSLPPAIFLMGP-TAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp -CCCEEEEEECC-TTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred CCCCcEEEEECC-CCCCHHHHHHHHHHHc---CCcEEecc
Confidence 344568899998 9999999999998765 44444444
No 178
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.80 E-value=0.0076 Score=46.10 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++|.|+|. .|+||||++..|+..|
T Consensus 3 ~~i~i~G~-~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGP-SASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 38999999 9999999999998877
No 179
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.79 E-value=0.008 Score=45.34 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|+|+|. +|+||||++..|+..+
T Consensus 3 ~~~I~l~G~-~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGG-PGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHh
Confidence 357888888 9999999999998876
No 180
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.79 E-value=0.0087 Score=49.02 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=28.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC--CeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRG--ISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G--~~Vl~~ 41 (233)
..+|+|+|. +|+||||++..|+..+...| .++..+
T Consensus 31 ~~ii~I~G~-sGsGKSTla~~L~~~l~~~g~~~~~~~i 67 (290)
T 1odf_A 31 PLFIFFSGP-QGSGKSFTSIQIYNHLMEKYGGEKSIGY 67 (290)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHHHHHGGGSCEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhhhcCCCCceEEE
Confidence 457899988 99999999999999998765 444443
No 181
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.78 E-value=0.0073 Score=53.26 Aligned_cols=35 Identities=6% Similarity=-0.077 Sum_probs=31.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
..+.|++. +|+||||++.++|...+.+ |.+|+++.
T Consensus 243 ~l~li~G~-pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSG-SGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEES-SCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred eEEEEeec-CCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 45677777 9999999999999999987 99999987
No 182
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.75 E-value=0.0083 Score=46.63 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++..|++.|. +|+||||++..|+..|
T Consensus 3 ~~~~I~l~G~-~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGP-PGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 4567899998 9999999999999877
No 183
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.75 E-value=0.008 Score=46.81 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+++.|+|.|. +|+||||++..|+..|
T Consensus 4 ~~~~I~l~G~-~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGA-PASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 4567999999 9999999999999887
No 184
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.71 E-value=0.004 Score=46.72 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=17.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+++.|.|+|. +|+||||++..|+..|
T Consensus 4 ~~~~I~l~G~-~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGP-FGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECC-C----CHHHHHHHHHS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHhc
Confidence 3567899998 9999999999888765
No 185
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.70 E-value=0.0093 Score=49.52 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=30.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d 42 (233)
..++.|+|. +|+|||+++.+++...+.. |.+|++++
T Consensus 107 G~i~~i~G~-~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGE-FGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECC-CCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 356788888 9999999999999987655 78999998
No 186
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.67 E-value=0.01 Score=46.49 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.|+|+|.|. +|+||+|.|..|+..+
T Consensus 28 k~kiI~llGp-PGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGG-PGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECC-TTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHH
Confidence 4678999998 9999999999999876
No 187
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.66 E-value=0.0068 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
++|+|+|+ +|+||||++..||..+
T Consensus 8 ~lI~I~Gp-tgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGP-TASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred ceEEEECC-CcCcHHHHHHHHHHHc
Confidence 48889998 9999999999999877
No 188
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.59 E-value=0.0079 Score=47.06 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+++.|+|.|. +|+||||++..|+..+
T Consensus 6 ~~~~I~l~G~-~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGA-PGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEEC-TTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 3567999999 9999999999998865
No 189
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.55 E-value=0.0076 Score=49.96 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
++++++.|+|. .|+||||+...|+... .|+|++++.|.
T Consensus 2 ~~i~v~~i~G~-~GaGKTTll~~l~~~~--~~~~~aVi~~d 39 (318)
T 1nij_A 2 NPIAVTLLTGF-LGAGKTTLLRHILNEQ--HGYKIAVIENE 39 (318)
T ss_dssp CCEEEEEEEES-SSSSCHHHHHHHHHSC--CCCCEEEECSS
T ss_pred CcccEEEEEec-CCCCHHHHHHHHHhhc--CCCcEEEEEec
Confidence 35789999999 9999999998887753 78999999854
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.54 E-value=0.02 Score=48.08 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=32.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+|+|+|. +|+||||+.-.|+..+...+.+|.++-
T Consensus 74 ~~~v~lvG~-pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGP-PGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEcC-CCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 568999999 999999999999999999999988864
No 191
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.53 E-value=0.013 Score=44.83 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=23.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
..|+|+|. +|+||||++..|+..+ |..+
T Consensus 21 ~~I~l~G~-~GsGKST~a~~La~~l---~~~~ 48 (201)
T 2cdn_A 21 MRVLLLGP-PGAGKGTQAVKLAEKL---GIPQ 48 (201)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH---TCCE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh---CCcE
Confidence 46888888 9999999999999877 5554
No 192
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.49 E-value=0.018 Score=46.50 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=28.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc----------CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR----------GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~----------G~~Vl~~d 42 (233)
-.++.|+|. +|+||||++..++..++.. +.+|+++.
T Consensus 30 G~i~~i~G~-~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~ 75 (279)
T 1nlf_A 30 GTVGALVSP-GGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLP 75 (279)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEE
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEE
Confidence 357888888 9999999999999977642 34677765
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.46 E-value=0.19 Score=45.94 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=48.8
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE 195 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~ 195 (233)
.+.+.|+|+||... +. .......... ..+++|.++..+.-.+....++.++..+++++ +|+||++ .. ...++
T Consensus 73 ~~~~nliDTpG~~~--f~--~~~~~~l~~a-d~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD-~~-~~~~~ 144 (665)
T 2dy1_A 73 GHRVFLLDAPGYGD--FV--GEIRGALEAA-DAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLD-KG-GDYYA 144 (665)
T ss_dssp TEEEEEEECCCSGG--GH--HHHHHHHHHC-SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGG-GC-CCHHH
T ss_pred CEEEEEEeCCCccc--hH--HHHHHHHhhc-CcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCc-hh-hhHHH
Confidence 56788999986531 11 0112222333 35777777655433344555666667788866 7899998 33 33455
Q ss_pred hHHHHHhhcC
Q psy14904 196 NYIELTKYLN 205 (233)
Q Consensus 196 ~~~~l~~~~~ 205 (233)
..+.+++.++
T Consensus 145 ~~~~l~~~l~ 154 (665)
T 2dy1_A 145 LLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 6677777666
No 194
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=95.45 E-value=0.02 Score=49.25 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=32.0
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++.++|.|||+ -|||||+.-|+..|.+.|++|.++-
T Consensus 47 ~~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~~g~~~ 82 (422)
T 1w78_A 47 PAPFVFTVAGT---NGKGTTCRTLESILMAAGYKVGVYS 82 (422)
T ss_dssp CSSEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCcEEEEeCC---cChHHHHHHHHHHHHHCCCCEEEEC
Confidence 35689999998 6899999999999999999998764
No 195
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.45 E-value=0.012 Score=44.78 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.|+|.|. .|+||||++..|+..|.
T Consensus 2 ~I~i~G~-~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGT-VGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHC
T ss_pred EEEEECC-CccCHHHHHHHHHHhcC
Confidence 5888998 99999999999998873
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.44 E-value=0.025 Score=46.13 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=30.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC----eeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI----SCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~----~Vl~~d 42 (233)
...+.++|. +|+|||+++..+|..+...++ .+..++
T Consensus 67 ~~~vll~G~-~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 67 TLHMSFTGN-PGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 446899998 999999999999999988765 555555
No 197
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.43 E-value=0.012 Score=45.12 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=23.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
.+|.|+|. .|+||||++..|+..+ |..+.
T Consensus 13 ~iIgltG~-~GSGKSTva~~L~~~l---g~~vi 41 (192)
T 2grj_A 13 MVIGVTGK-IGTGKSTVCEILKNKY---GAHVV 41 (192)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHH---CCEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc---CCEEE
Confidence 47999998 9999999998888764 76553
No 198
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.42 E-value=0.012 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+|+|+|. +|+||||++..|+..|
T Consensus 10 ~~i~i~G~-~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGP-AGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 47999999 9999999999998887
No 199
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.40 E-value=0.02 Score=46.55 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=24.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
.+.+|+|+|. .|+||||++..|+ . .|..+.-
T Consensus 74 ~~~iI~I~G~-~GSGKSTva~~La-~---lg~~~id 104 (281)
T 2f6r_A 74 GLYVLGLTGI-SGSGKSSVAQRLK-N---LGAYIID 104 (281)
T ss_dssp TCEEEEEEEC-TTSCHHHHHHHHH-H---HTCEEEE
T ss_pred CCEEEEEECC-CCCCHHHHHHHHH-H---CCCcEEe
Confidence 3568999999 9999999998888 3 3776543
No 200
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.39 E-value=0.0081 Score=49.94 Aligned_cols=32 Identities=28% Similarity=0.105 Sum_probs=27.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|+|. +|+|||+++..++.. .|.+|++++
T Consensus 124 sviLI~Gp-PGsGKTtLAlqlA~~---~G~~VlyIs 155 (331)
T 2vhj_A 124 GMVIVTGK-GNSGKTPLVHALGEA---LGGKDKYAT 155 (331)
T ss_dssp EEEEEECS-CSSSHHHHHHHHHHH---HHTTSCCEE
T ss_pred cEEEEEcC-CCCCHHHHHHHHHHh---CCCCEEEEE
Confidence 45667777 999999999999887 688999887
No 201
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.38 E-value=0.023 Score=50.33 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=31.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+|+++|. +|+||||++..|+..|...+.++.+++
T Consensus 35 ~~lIvlvGl-pGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 35 PTVIVMVGL-PARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 346777777 999999999999999998898887776
No 202
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.36 E-value=0.02 Score=47.58 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=28.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH--cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK--RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~--~G~~Vl~~d 42 (233)
..+|+|+|. .|+||||++..|+..+.. .+.+|.++.
T Consensus 92 p~iigI~Gp-sGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 92 PYIIGIAGS-VAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 448999998 999999999999998874 245677664
No 203
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.35 E-value=0.015 Score=45.74 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+..|+|.|. .|+||||++..|+..|
T Consensus 15 ~~~~I~l~G~-~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGP-PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 3457888888 9999999999999887
No 204
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.28 E-value=0.015 Score=42.90 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.|.|+|. .|+||||++..|+..+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGF-MCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESC-TTSCHHHHHHHHHHHH
T ss_pred eEEEECC-CCCCHHHHHHHHHHHh
Confidence 5888988 9999999999998877
No 205
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=95.23 E-value=0.022 Score=49.08 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=31.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.|||+ -|||||+.-|+..|...|++|.++-
T Consensus 38 ~~~vI~VtGT---nGKtTT~~~l~~iL~~~G~~vg~~~ 72 (428)
T 1jbw_A 38 QGRYIHVTGT---NGKGSAANAIAHVLEASGLTVGLYT 72 (428)
T ss_dssp SSCEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcEEEEECC---CChHHHHHHHHHHHHHCCCCEEEEe
Confidence 5689999998 6899999999999999999999874
No 206
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.20 E-value=0.015 Score=46.39 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
..+|+|+|. .|+||||++..|+..|
T Consensus 27 g~~I~I~G~-~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGP-SGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHhc
Confidence 468999999 9999999999998766
No 207
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=95.20 E-value=0.027 Score=48.80 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...++|.|||+ -|||||+.-|+..|.+.|+||+++-
T Consensus 50 ~~~~vI~VtGT---NGKgSt~~~l~~iL~~~G~~vg~~t 85 (437)
T 3nrs_A 50 PAPKIFTVAGT---NGKGTTCCTLEAILLAAGLRVGVYS 85 (437)
T ss_dssp SSSEEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccCCEEEEECC---cChHHHHHHHHHHHHHCCCcEEEEC
Confidence 45789999998 6899999999999999999999875
No 208
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.20 E-value=0.022 Score=51.79 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=30.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP 43 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp 43 (233)
...|.|+ +|+|||+|.+.+...+.++|.+|+++=|
T Consensus 207 ~~lI~GP-PGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGP-PGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 4556666 9999999999999999999999999753
No 209
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.18 E-value=0.017 Score=44.63 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.+.|+|+|+ .|+||||++..|+..+
T Consensus 7 ~g~~i~l~Gp-sGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGP-SGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECC-TTSCHHHHHHHHHHST
T ss_pred CCcEEEEECc-CCCCHHHHHHHHHhhC
Confidence 3568899998 9999999999888765
No 210
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.17 E-value=0.021 Score=48.49 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=33.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~ 44 (233)
..++|+|+ +|+||||+...|+..+...|.+|.++||.
T Consensus 36 ~~~~i~G~-~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAK-PGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEEcC-CCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45788888 89999999999999998899999999974
No 211
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.17 E-value=0.019 Score=45.58 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=24.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
...|.|+|. +|+||||++..|+..+ |..+.
T Consensus 29 ~~~I~l~G~-~GsGKsT~a~~L~~~~---g~~~i 58 (243)
T 3tlx_A 29 DGRYIFLGA-PGSGKGTQSLNLKKSH---CYCHL 58 (243)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHH---CCEEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh---CCeEE
Confidence 456888888 9999999999998776 54443
No 212
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=95.15 E-value=0.18 Score=42.93 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=39.6
Q ss_pred cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
..+.+.|+||||.-. +.. .....+.. ..-+++|.++..+...++...+..++..+++.+-+++||++
T Consensus 64 ~~~~~~iiDtpG~~~--f~~--~~~~~~~~-aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~D 130 (397)
T 1d2e_A 64 AARHYAHTDCPGHAD--YVK--NMITGTAP-LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKAD 130 (397)
T ss_dssp SSCEEEEEECSSHHH--HHH--HHHHTSSC-CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred CCeEEEEEECCChHH--HHH--HHHhhHhh-CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcc
Confidence 357899999987521 000 00000111 12477777776654455555566666778875557899998
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.15 E-value=0.018 Score=45.03 Aligned_cols=36 Identities=17% Similarity=-0.008 Sum_probs=29.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
..++.|+|. +|+||||++..|+..... .+.++++++
T Consensus 24 G~~~~i~G~-~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGE-FRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECC-TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 357888887 999999999999986433 367899887
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.14 E-value=0.018 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.+|+|.|. .|+||||++..|+..+
T Consensus 27 ~~~i~l~G~-~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGP-PGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 468999999 9999999999999877
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.11 E-value=0.025 Score=46.04 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.+.|. +|+|||+++..++..+...+..+..++
T Consensus 48 ~~~ll~G~-~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGP-TGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEEESC-SSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred eEEEEECC-CCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 46888888 999999999999999988777777776
No 216
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.09 E-value=0.028 Score=45.86 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=27.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..+|..+ |.++..++
T Consensus 36 p~~lLl~Gp-pGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 36 PLILGIWGG-KGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp CSEEEEEEC-TTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 356788888 9999999999999988 77777776
No 217
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.08 E-value=0.034 Score=46.64 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=31.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--------CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--------GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--------G~~Vl~~d 42 (233)
.+.++|+|. +|+|||+++..++..+.+. +..+..++
T Consensus 45 ~~~vll~G~-~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGL-TGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECC-CCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 457899998 9999999999999999776 77887776
No 218
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.08 E-value=0.019 Score=43.78 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=28.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.++|. +|+|||+++..++..+...++++.++.
T Consensus 39 ~~~ll~G~-~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 39 PHLLFSGP-PGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp CCEEEECS-TTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHhccccccceEE
Confidence 35888888 999999999999999987776655543
No 219
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.07 E-value=0.012 Score=44.92 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=22.9
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+...|+|+|. .|+||||++..|+..+
T Consensus 4 ~~g~~i~l~G~-~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGP-SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECS-TTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECC-CCCCHHHHHHHHHHhh
Confidence 34568999999 9999999998888776
No 220
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.05 E-value=0.028 Score=48.93 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=29.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d 42 (233)
.+.|.|. +|+||||++..++..|.+.|. +|+++-
T Consensus 47 ~~li~G~-aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGP-AGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 6677777 999999999999999999987 777764
No 221
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.04 E-value=0.15 Score=51.18 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=33.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-++|-|.|+ .|+||||++++.+..-.++|..++++|
T Consensus 1431 g~~iei~g~-~~sGkttl~~~~~a~~~~~g~~~~~i~ 1466 (1706)
T 3cmw_A 1431 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID 1466 (1706)
T ss_dssp TSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 468999999 999999999999999999999999998
No 222
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.03 E-value=0.018 Score=44.40 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
.|+|+|. +|+||||++..|+..+ |..+.
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~---~~~~i 29 (216)
T 3fb4_A 2 NIVLMGL-PGAGKGTQAEQIIEKY---EIPHI 29 (216)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHH---CCCEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh---CCcEe
Confidence 4788888 9999999999998876 55443
No 223
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.01 E-value=0.025 Score=43.64 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
.|+|+|. +|+||||++..|+..+ |..+.
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~---g~~~i 29 (214)
T 1e4v_A 2 RIILLGA-PVAGKGTQAQFIMEKY---GIPQI 29 (214)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH---CCCEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh---CCeEE
Confidence 3788888 9999999999999877 65543
No 224
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.98 E-value=0.019 Score=44.00 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=24.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++.+|+|+|. +|+||||++..|+..+. .+.+++
T Consensus 20 ~~~~i~i~G~-~GsGKSTl~~~L~~~~~----~~~~i~ 52 (207)
T 2qt1_A 20 KTFIIGISGV-TNSGKTTLAKNLQKHLP----NCSVIS 52 (207)
T ss_dssp CCEEEEEEES-TTSSHHHHHHHHHTTST----TEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHhcC----CcEEEe
Confidence 4568999999 99999999988776542 355555
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.97 E-value=0.034 Score=43.59 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=29.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
-.+++|.|. .|+||||+...|+.... ..+..+.++.
T Consensus 30 G~~~~l~Gp-nGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGG-TGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECC-TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeC-CCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457889998 99999999999996555 6677787775
No 226
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.92 E-value=0.03 Score=43.27 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=22.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.+|+|+|. .|+||||++..|+. .|+.+
T Consensus 5 ~~I~i~G~-~GSGKST~~~~L~~----lg~~~ 31 (218)
T 1vht_A 5 YIVALTGG-IGSGKSTVANAFAD----LGINV 31 (218)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHH----TTCEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHH----cCCEE
Confidence 57999998 99999999988875 47654
No 227
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.88 E-value=0.035 Score=45.67 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=29.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH--HcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK--KRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~--~~G~~Vl~~d 42 (233)
...+|+|+|. .|+||||++..|+..+. -.+-+|.+++
T Consensus 79 ~g~iigI~G~-~GsGKSTl~~~L~~~l~~~~~~G~i~vi~ 117 (308)
T 1sq5_A 79 IPYIISIAGS-VAVGKSTTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp CCEEEEEEEC-TTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHhhCCCCCeEEEEe
Confidence 4568999999 99999999999999886 3344677765
No 228
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.85 E-value=0.012 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.|+|+|+ +|+||||++..||..|
T Consensus 41 ~lIvI~GP-TgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGA-TGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHTTS
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHC
Confidence 58999999 9999999999998765
No 229
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.85 E-value=0.038 Score=46.08 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc---CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR---GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~---G~~Vl~~d 42 (233)
...++|+|. +|+||||++..++..+... +..+.+++
T Consensus 45 ~~~vli~G~-~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGL-TGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEEC-TTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 457899998 9999999999999998876 77887776
No 230
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.83 E-value=0.019 Score=50.73 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=30.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHH-c-CCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKK-R-GISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~-~-G~~Vl~~d 42 (233)
+..+|.++|. .|+||||++..||..|.. + |+.+-++|
T Consensus 394 ~~~~I~l~Gl-sGsGKSTIa~~La~~L~~~~g~r~~~~lD 432 (511)
T 1g8f_A 394 QGFSIVLGNS-LTVSREQLSIALLSTFLQFGGGRYYKIFE 432 (511)
T ss_dssp CCEEEEECTT-CCSCHHHHHHHHHHHHTTSCSCCCEEECC
T ss_pred cceEEEeccc-CCCCHHHHHHHHHHHHHHhhcCcceEEec
Confidence 3457889998 999999999999999986 5 46666666
No 231
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=94.82 E-value=0.031 Score=48.44 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=31.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.++|.|||+ -|||||+.-|+..|...|++|.++-
T Consensus 51 ~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~vg~~~ 85 (442)
T 1o5z_A 51 EYKTIHIGGT---NGKGSVANMVSNILVSQGYRVGSYY 85 (442)
T ss_dssp SSEEEEEECS---SSHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cCCEEEEECC---cCHHHHHHHHHHHHHHCCCCEEEEC
Confidence 5689999998 6899999999999999999999874
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.81 E-value=0.019 Score=44.00 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|+|+|. +|+||||++..|+..+
T Consensus 12 ~~~i~l~G~-sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGP-SGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECC-TTSCHHHHHHHHHHHC
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhC
Confidence 357888888 9999999999998876
No 233
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=94.80 E-value=0.034 Score=48.87 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=31.8
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..++|.|||+ -|||||+.-|+..|.+.|++|+.+-
T Consensus 62 ~~~~vI~VtGT---NGKtST~~~l~~iL~~~G~~vG~~t 97 (487)
T 2vos_A 62 RSYPSIHIAGT---NGKTSVARMVDALVTALHRRTGRTT 97 (487)
T ss_dssp GSSCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hcCeEEEEeCC---CCcHHHHHHHHHHHHHcCCCeEEEC
Confidence 35689999999 4899999999999999999998763
No 234
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.79 E-value=0.031 Score=48.39 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d 42 (233)
.+.+++.|. +|+||||++..++..+... +.++.+++
T Consensus 130 ~~~lll~Gp-~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGG-VGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECS-SSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 457889998 9999999999999999877 88888876
No 235
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=94.75 E-value=0.042 Score=47.27 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=32.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~ 45 (233)
..++|.|+ +|+|||++...+...+.+.|.++.++||-+
T Consensus 54 ~h~~i~G~-tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGA-TGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEEC-TTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 45778888 899999998889988889999999999753
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.72 E-value=0.027 Score=42.40 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSE 30 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~ 30 (233)
..+|+|.|. +|+||||++..|+..
T Consensus 9 g~~i~l~G~-~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGH-PGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEEC-TTSCHHHHHHHHHTC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHhc
Confidence 468899998 999999999888765
No 237
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=94.70 E-value=0.036 Score=45.99 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=29.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
..++|+|||+ -|||||+.-|++.|.+.|+++.+
T Consensus 107 ~~~~IaVTGT---nGKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 107 HHWVLGVAGT---HGKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp GSEEEEEESS---SCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEECC---CCHHHHHHHHHHHHHHcCCCceE
Confidence 3578999988 79999999999999999998754
No 238
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.66 E-value=0.02 Score=44.25 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=22.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
.|.|+|. +|+||||++..|+..+ |..+.
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~---~~~~i 29 (216)
T 3dl0_A 2 NLVLMGL-PGAGKGTQGERIVEKY---GIPHI 29 (216)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHS---SCCEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh---CCcEE
Confidence 3788888 9999999999988655 55443
No 239
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.64 E-value=0.036 Score=43.18 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.|+|.|. +|+||||++..|+..+ |..+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~La~~l---g~~~ 28 (223)
T 2xb4_A 2 NILIFGP-NGSGKGTQGNLVKDKY---SLAH 28 (223)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH---TCEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh---CCeE
Confidence 4788888 9999999999999887 5544
No 240
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.61 E-value=0.024 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
...|.++|. +|+||||++..|+..+
T Consensus 33 ~~livl~G~-sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQ-PGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECC-TTSCTHHHHHHHHHHT
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 356667777 9999999999998765
No 241
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=94.59 E-value=0.24 Score=44.58 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCeEEEeccCcccC-ccC-CCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 117 TDVIILEGIGGFSV-PFH-DNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 117 ~D~vlID~~~g~~~-p~~-~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
+.+.|+||||...- ... ..+..+| -+++|.+...+-..++...++.++..++++ -+++||++
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD-------~aILVvDa~~Gv~~qT~e~l~~l~~~~vPi-IVViNKiD 133 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALAD-------LAILIVDINEGFKPQTQEALNILRMYRTPF-VVAANKID 133 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCS-------EEEEEEETTTCCCHHHHHHHHHHHHTTCCE-EEEEECGG
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCC-------EEEEEEECCCCccHhHHHHHHHHHHcCCeE-EEEecccc
Confidence 35899999986421 111 1222222 478888877654445566667777788885 48899998
No 242
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=94.58 E-value=0.042 Score=48.37 Aligned_cols=35 Identities=29% Similarity=0.104 Sum_probs=31.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++|.|||+ .|||||+.-|+..|.+.|+++.++-
T Consensus 107 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~~g 141 (498)
T 1e8c_A 107 NLRLVGVTGT---NGKTTTTQLLAQWSQLLGEISAVMG 141 (498)
T ss_dssp SSEEEEEESS---SCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCeEEEEeCC---cChHHHHHHHHHHHHhCCCCEEEEC
Confidence 4689999988 6899999999999999999998764
No 243
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.57 E-value=0.056 Score=45.12 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=32.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+..+++|+|. +|+||||+...|+..+...+.+|.++.
T Consensus 54 ~g~~v~i~G~-~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 54 RAIRVGITGV-PGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CSEEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 3568999999 999999999999999988888998865
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.53 E-value=0.03 Score=46.21 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=28.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH------------HcC----CeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK------------KRG----ISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~------------~~G----~~Vl~~d 42 (233)
..++.|+|. +|+|||+++.+++...+ +.| .+|++++
T Consensus 98 g~i~~i~G~-~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~ 149 (322)
T 2i1q_A 98 QSVTEFAGV-FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID 149 (322)
T ss_dssp TEEEEEEES-TTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE
Confidence 356778888 99999999999998642 235 7999998
No 245
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.51 E-value=0.041 Score=46.10 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
+.++|+|. +|+||||++..++..+... +..+..++
T Consensus 45 ~~~li~G~-~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 45 PRATLLGR-PGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 37888888 9999999999999998777 67777776
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.50 E-value=0.019 Score=45.77 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=24.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...|.++|. +|+||||++..|+..+ +..+.+++
T Consensus 32 ~~~i~l~G~-~GsGKSTla~~L~~~l---~~~~~~~~ 64 (253)
T 2p5t_B 32 PIAILLGGQ-SGAGKTTIHRIKQKEF---QGNIVIID 64 (253)
T ss_dssp CEEEEEESC-GGGTTHHHHHHHHHHT---TTCCEEEC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHhc---CCCcEEEe
Confidence 457888888 9999999999998876 33344555
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.49 E-value=0.025 Score=42.47 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+.++|+|+ +|+||||++..|+..+.
T Consensus 5 g~~i~i~Gp-sGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGA-HGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhhCC
Confidence 457888988 99999999999888653
No 248
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.49 E-value=0.055 Score=44.70 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=29.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-G-ISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G-~~Vl~~d 42 (233)
+..+++|+|. .|+||||++..|+..+... | .+|.++-
T Consensus 89 ~g~ivgI~G~-sGsGKSTL~~~L~gll~~~~G~~~v~~v~ 127 (312)
T 3aez_A 89 VPFIIGVAGS-VAVGKSTTARVLQALLARWDHHPRVDLVT 127 (312)
T ss_dssp CCEEEEEECC-TTSCHHHHHHHHHHHHHTSTTCCCEEEEE
T ss_pred CCEEEEEECC-CCchHHHHHHHHHhhccccCCCCeEEEEe
Confidence 3468999998 9999999999999998754 4 4676653
No 249
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.46 E-value=0.039 Score=43.32 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=24.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
..+|.|++. .|+||||++..||..| |+++
T Consensus 14 ~~iI~i~g~-~gsGk~~i~~~la~~l---g~~~ 42 (223)
T 3hdt_A 14 NLIITIERE-YGSGGRIVGKKLAEEL---GIHF 42 (223)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHH---TCEE
T ss_pred CeEEEEeCC-CCCCHHHHHHHHHHHc---CCcE
Confidence 458999998 9999999999999888 6554
No 250
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.44 E-value=0.041 Score=45.95 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=30.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d 42 (233)
..+.++|+|. +|+||||++..++..+.+. +..+..++
T Consensus 43 ~~~~vll~G~-~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 43 KPSNALLYGL-TGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCCEEECBC-TTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCcEEEECC-CCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3457888888 9999999999999999775 56666665
No 251
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.43 E-value=0.036 Score=43.80 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+..+|+|+|. .|+||||++..|+..+
T Consensus 24 ~g~iigI~G~-~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGG-TASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHh
Confidence 3568999999 9999999999999887
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.42 E-value=0.028 Score=42.75 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
..+++|+|. .|+||||++..|+..+
T Consensus 7 g~ii~l~Gp-~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAP-SGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred CcEEEEECc-CCCCHHHHHHHHHhhC
Confidence 458999999 9999999999888765
No 253
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=94.41 E-value=0.048 Score=48.49 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=31.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+++|.|||+ .|||||+.-|+..|.+.|+++.++-
T Consensus 145 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~G~~~g~~g 179 (535)
T 2wtz_A 145 RLTVIGITGT---SGKTTTTYLVEAGLRAAGRVAGLIG 179 (535)
T ss_dssp SSEEEEEESS---SCHHHHHHHHHHHHHHTTCCEEEES
T ss_pred cceEEEeeCC---CChHHHHHHHHHHHHHCCCCEEEEC
Confidence 4689999988 6899999999999999999998763
No 254
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.40 E-value=0.021 Score=41.36 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=27.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.+.|. +|+|||+++..++....+.+.... ++
T Consensus 25 ~~vll~G~-~GtGKt~lA~~i~~~~~~~~~~~v-~~ 58 (145)
T 3n70_A 25 IAVWLYGA-PGTGRMTGARYLHQFGRNAQGEFV-YR 58 (145)
T ss_dssp SCEEEESS-TTSSHHHHHHHHHHSSTTTTSCCE-EE
T ss_pred CCEEEECC-CCCCHHHHHHHHHHhCCccCCCEE-EE
Confidence 35788888 999999999999887777677766 65
No 255
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.38 E-value=0.024 Score=46.88 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=21.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|+|+|+ +|+||||++..||..+
T Consensus 3 ~~~i~i~Gp-tgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGP-TAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECC-TTSCHHHHHHHHHHTT
T ss_pred CcEEEEECC-CcCCHHHHHHHHHHhC
Confidence 357888888 9999999999998776
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.35 E-value=0.046 Score=54.79 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=31.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|++. +|+||||++.++|...+++|.+|++++
T Consensus 733 ~lVlI~G~-PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 733 RIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp SEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEECC-CCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 46777777 999999999999999999999999997
No 257
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.27 E-value=0.044 Score=42.38 Aligned_cols=36 Identities=19% Similarity=0.038 Sum_probs=28.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d 42 (233)
-.++.|.|. .|+||||++..|+..+.. .+.++++++
T Consensus 25 G~~~~l~G~-nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 25 QAITEVFGE-FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SEEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 457889999 999999999999987654 245677776
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.27 E-value=0.034 Score=41.90 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~ 29 (233)
..++.++|. .|+||||++..|+.
T Consensus 2 g~ii~l~G~-~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGP-AGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECS-TTSSHHHHHHHHHH
T ss_pred CeEEEEECC-CCCcHHHHHHHHhc
Confidence 357888888 99999999999975
No 259
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.26 E-value=0.044 Score=45.98 Aligned_cols=36 Identities=19% Similarity=0.050 Sum_probs=29.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d 42 (233)
..++.|.|. .|+||||++..|+...+.. |-+|++++
T Consensus 131 G~i~~I~G~-~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 131 QAITEVFGE-FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp SEEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 457889998 9999999999999987532 35888887
No 260
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.23 E-value=0.051 Score=41.94 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=22.0
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.++++|.|+|. +|+||+|+|--|...+
T Consensus 9 ~~~~II~itGk-~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGK-RKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECC-CCCChHHHHHHHHHHc
Confidence 36778888877 9999999998776655
No 261
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.20 E-value=0.033 Score=42.21 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++|+|. .|+|||+.|..|+.. |.++.|+.
T Consensus 2 ilV~Gg-~~SGKS~~A~~la~~----~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGG-ARSGKSRHAEALIGD----APQVLYIA 30 (180)
T ss_dssp EEEEEC-TTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred EEEECC-CCCcHHHHHHHHHhc----CCCeEEEe
Confidence 788888 999999999998754 77899987
No 262
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.14 E-value=0.038 Score=44.19 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.++|+|+|. .|+||||++..|+..+
T Consensus 48 g~~i~l~G~-~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGM-MGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhc
Confidence 468999999 9999999999999887
No 263
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.06 E-value=0.052 Score=49.02 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=28.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH----cCCeeeEEee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK----RGISCIGMKP 43 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~----~G~~Vl~~dp 43 (233)
+.+.|+|. +|+||||+...+...|.+ .|.+|++.=|
T Consensus 165 ~~~vi~G~-pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP 204 (608)
T 1w36_D 165 RISVISGG-PGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 (608)
T ss_dssp SEEEEECC-TTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred CCEEEEeC-CCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC
Confidence 45666666 999999999999999984 4678888654
No 264
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.06 E-value=0.087 Score=42.27 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=29.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
...++|+|. .|+||||+...|+..+... .-+|.+..
T Consensus 25 g~~v~i~Gp-~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 25 MGLILVTGP-TGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SEEEEEECS-TTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEECC-CCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 457899999 8999999999999998764 44676653
No 265
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.02 E-value=0.057 Score=42.12 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
||.+ .+.|.+.|. .|+||||.+..|+..|..
T Consensus 1 ~m~~-g~~i~~eG~-~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 1 MMGR-GKLILIEGL-DRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCC-CCEEEEEEC-SSSSHHHHHHHHHHHHCS
T ss_pred CCCC-CeEEEEECC-CCCCHHHHHHHHHHHhcc
Confidence 5543 568888888 999999999999999965
No 266
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.95 E-value=0.048 Score=46.64 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.++|+|+|+ +|+||||++..||..+.
T Consensus 2 ~~~i~i~Gp-tgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGT-TGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEEC-SSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECc-chhhHHHHHHHHHHHCC
Confidence 357889998 99999999999998873
No 267
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.90 E-value=0.044 Score=44.50 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSE 30 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~ 30 (233)
+.|.|+|. +|+||||++..|+..
T Consensus 3 ~~I~l~G~-~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGC-PGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHh
Confidence 57888888 999999999888873
No 268
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.87 E-value=0.055 Score=41.22 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=24.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRG 35 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G 35 (233)
+++|+|. .|+||||+...|+..+...|
T Consensus 3 ~i~i~G~-nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGP-PGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESC-CSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECC-CCChHHHHHHHHHhhcccCC
Confidence 6889998 99999999999999998777
No 269
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.86 E-value=0.038 Score=44.10 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=29.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|+|. +|+|||+++..++..+.+.+.++..++
T Consensus 30 ~~vll~G~-~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 30 KPVLIIGE-RGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp SCEEEECC-TTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCEEEECC-CCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 46888888 999999999999988877777777776
No 270
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.83 E-value=0.05 Score=42.12 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+|++.|+ +|+||+|.|..|+..+
T Consensus 2 ~Iil~Gp-PGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGP-PGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHH
Confidence 4778888 9999999999999876
No 271
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.83 E-value=0.091 Score=41.48 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=26.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..++..+ +.++..++
T Consensus 39 ~~~vll~G~-~GtGKT~la~~la~~~---~~~~~~~~ 71 (262)
T 2qz4_A 39 PKGALLLGP-PGCGKTLLAKAVATEA---QVPFLAMA 71 (262)
T ss_dssp CCEEEEESC-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHh---CCCEEEec
Confidence 456888888 9999999999999876 55666655
No 272
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.81 E-value=0.065 Score=48.54 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
...|.|+ +|+|||++...++..+.+ .+.+|+++=
T Consensus 197 ~~li~Gp-pGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGP-PGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECC-CCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 5567777 999999999999999887 788999875
No 273
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.75 E-value=0.048 Score=45.00 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|+|+|+ +|+||||++..||..+
T Consensus 10 ~~~i~i~Gp-tgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGP-TASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred CcEEEEECC-CccCHHHHHHHHHHhC
Confidence 357778888 9999999999998875
No 274
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.73 E-value=0.074 Score=47.09 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-.++.|+|. .|+||||++..++..+...|.+++++.
T Consensus 281 G~i~~i~G~-~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 281 DSIILATGA-TGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SCEEEEEEC-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEEeC-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 347888888 999999999999999988898888876
No 275
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.72 E-value=0.059 Score=42.28 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+..+|+|+|. .|+||||++..|+..|
T Consensus 15 ~~~~i~i~G~-~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGP-ASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECS-SCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 3568999998 9999999999888766
No 276
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.67 E-value=0.088 Score=42.60 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=27.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.++|. +|+|||+++..++..+ +.++..++
T Consensus 50 ~~~vll~G~-~GtGKT~la~~la~~l---~~~~~~i~ 82 (310)
T 1ofh_A 50 PKNILMIGP-TGVGKTEIARRLAKLA---NAPFIKVE 82 (310)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHh---CCCEEEEc
Confidence 356888888 9999999999999988 55666665
No 277
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.66 E-value=0.044 Score=42.52 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.+.+.|+ +|+||||+|..||..+
T Consensus 59 n~ili~GP-PGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGP-ANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESC-GGGCHHHHHHHHHHHH
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHh
Confidence 36888888 9999999999999988
No 278
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.64 E-value=0.1 Score=44.07 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=30.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
+...++|+|. .|+||||+...|+..+... ..+|..++
T Consensus 135 ~g~~i~ivG~-~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 135 KMGLILVTGP-TGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSEEEEEECS-SSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 3457899998 8999999999999999875 45776664
No 279
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=93.62 E-value=0.076 Score=43.91 Aligned_cols=35 Identities=14% Similarity=-0.006 Sum_probs=28.7
Q ss_pred CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
+.++|.|-| +=||+|||-++.-|+..|+. +++.++
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~--~~~~il 70 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLLKD--KRVCIL 70 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHTTT--SCEEEE
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHHhh--cCceEE
Confidence 467899998 66999999999999999954 456655
No 280
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=93.60 E-value=0.078 Score=46.27 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=29.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.++|.|||+ -|||||+.-|+..|.+.|+++.++
T Consensus 114 ~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~~~~~ 146 (469)
T 1j6u_A 114 KEEFAVTGT---DGKTTTTAMVAHVLKHLRKSPTVF 146 (469)
T ss_dssp CCEEEEECS---SSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHHcCCCceEE
Confidence 579999998 589999999999999999988543
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.48 E-value=0.04 Score=41.56 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
+++.|+|+ .|+||||+...|+..+.
T Consensus 2 ~ii~l~Gp-sGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGP-SGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESS-SSSSHHHHHHHHHHHCG
T ss_pred CEEEEECC-CCCCHHHHHHHHHhhCC
Confidence 46888888 99999999999988775
No 282
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.44 E-value=0.059 Score=41.18 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+.++|+|+ .|+||||+...|+..+.
T Consensus 4 g~~i~lvGp-sGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGP-SGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhhCc
Confidence 467899999 99999999999988764
No 283
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.34 E-value=0.072 Score=40.11 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.++|+|. .|+||||+...|+..+.
T Consensus 2 ~i~l~G~-nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGE-PGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHG
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhC
Confidence 5788888 99999999999999884
No 284
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.31 E-value=0.099 Score=39.40 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=23.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
.+-+.++|. +|+||||+|..|.. +|++.+.
T Consensus 16 G~gvli~G~-SGaGKStlal~L~~----rG~~lva 45 (181)
T 3tqf_A 16 KMGVLITGE-ANIGKSELSLALID----RGHQLVC 45 (181)
T ss_dssp TEEEEEEES-SSSSHHHHHHHHHH----TTCEEEE
T ss_pred CEEEEEEcC-CCCCHHHHHHHHHH----cCCeEec
Confidence 456888998 99999999987765 7876543
No 285
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=93.22 E-value=0.11 Score=44.86 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=29.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
.++|.|||+ -|||||+.-|+..|.+.|+++...
T Consensus 104 ~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAITGS---NGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp SCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHhcCCCEEEe
Confidence 579999988 689999999999999999998865
No 286
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=93.21 E-value=0.096 Score=46.40 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=29.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
..++|+|||+ -|||||+.-++..|.+.|+++.+
T Consensus 121 ~~~vIaVTGT---nGKTTTt~li~~iL~~~G~~~~~ 153 (524)
T 3hn7_A 121 SRHVIAVAGT---HGKTTTTTMLAWILHYAGIDAGF 153 (524)
T ss_dssp GSEEEEEECS---SCHHHHHHHHHHHHHHTTCCCEE
T ss_pred cCcEEEEECC---CCHHHHHHHHHHHHHHcCCCceE
Confidence 3578999988 58999999999999999998764
No 287
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.1 Score=43.16 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=25.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
..+.++|+|+ +|+|||+++..++..|.+.
T Consensus 44 ~~~~lli~Gp-PGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 44 QNKLFYITNA-DDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCCEEEEECC-CSHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 4567889988 9999999999999999764
No 288
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.18 E-value=0.064 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~ 29 (233)
..++|.|+|. ||+||||+|..++.
T Consensus 151 ~~~vv~I~G~-gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGR-AGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECS-TTSSHHHHHHHHHH
T ss_pred CceEEEEEcC-CCCCHHHHHHHHHH
Confidence 4678999999 99999999998885
No 289
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.17 E-value=0.094 Score=48.94 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=29.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
+...|.|. +|+|||++...++..|.+ .+.+|+++=
T Consensus 372 ~~~lI~Gp-pGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 372 PLSLIQGP-PGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp SEEEEECC-TTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred CeEEEEcC-CCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 35567776 999999999999999987 688998875
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.14 E-value=0.12 Score=43.43 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d 42 (233)
...+.|+|. .|+||||+...|+..+... |.++..+.
T Consensus 123 ~g~i~I~Gp-tGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 123 RGLVLVTGP-TGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp SEEEEEECS-TTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 347888888 9999999999999999875 66776553
No 291
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.13 E-value=0.065 Score=42.13 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+.|+|.|. .|+||||++..|+..|.
T Consensus 2 ~~~i~~~G~-~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGN-IAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEEC-TTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHcC
Confidence 357889988 99999999999998874
No 292
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.13 E-value=0.021 Score=45.75 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
+++.|+|.|. .|+||||++..|+..|.
T Consensus 23 ~~~~I~ieG~-~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGN-IAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECS-TTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHhcC
Confidence 4678899998 99999999999988773
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.09 E-value=0.072 Score=40.95 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|+|+|+ .|+||||+...|+..+
T Consensus 19 g~~ivl~GP-SGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGA-SGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHC
T ss_pred CCEEEEECc-CCCCHHHHHHHHHhhC
Confidence 467888888 9999999998888654
No 294
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.09 E-value=0.071 Score=40.98 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=24.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.+|+|++. .|+||||++..||..| |++.
T Consensus 7 ~iI~i~g~-~GsGk~ti~~~la~~l---g~~~ 34 (201)
T 3fdi_A 7 IIIAIGRE-FGSGGHLVAKKLAEHY---NIPL 34 (201)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHT---TCCE
T ss_pred eEEEEeCC-CCCCHHHHHHHHHHHh---CcCE
Confidence 48999998 9999999999999888 5553
No 295
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.09 E-value=0.14 Score=44.54 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=29.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..|.++|. +|+||||++..|+..+...+.++-.+.
T Consensus 40 ~~IvlvGl-pGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 40 TLIVMVGL-PARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 36777887 999999999999999987777766554
No 296
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.08 E-value=0.076 Score=40.81 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=23.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRG 35 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G 35 (233)
+.+.|+|. +|+||||++..++..+...+
T Consensus 46 ~~~ll~G~-~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 46 HAYLFSGT-RGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp SEEEEECS-TTSCHHHHHHHHHHHHHCTT
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHhcCCC
Confidence 36788888 99999999999998887543
No 297
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=93.04 E-value=0.11 Score=44.93 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=28.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
.++|+|||+ -|||||+.-|++.|.+.|+++.+
T Consensus 112 ~~~IaVTGT---nGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 112 SQLIGITGS---NGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp SEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHhcCCCEEE
Confidence 479999998 56999999999999999998854
No 298
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.95 E-value=0.093 Score=46.82 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=30.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC-CeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRG-ISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G-~~Vl~~d 42 (233)
..+|+++|. .|+||||++..|+..+...+ .++.++|
T Consensus 369 G~iI~LiG~-sGSGKSTLar~La~~L~~~~G~~i~~lD 405 (552)
T 3cr8_A 369 GFTVFFTGL-SGAGKSTLARALAARLMEMGGRCVTLLD 405 (552)
T ss_dssp CEEEEEEES-SCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred ceEEEEECC-CCChHHHHHHHHHHhhcccCCceEEEEC
Confidence 458999999 99999999999999997654 5676666
No 299
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.95 E-value=0.12 Score=42.60 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=27.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.+.+.|. +|+|||+++..+|..+ .+..+..++
T Consensus 44 ~~~~iLL~Gp-pGtGKT~la~ala~~~--~~~~~~~i~ 78 (322)
T 1xwi_A 44 PWRGILLFGP-PGTGKSYLAKAVATEA--NNSTFFSIS 78 (322)
T ss_dssp CCSEEEEESS-SSSCHHHHHHHHHHHT--TSCEEEEEE
T ss_pred CCceEEEECC-CCccHHHHHHHHHHHc--CCCcEEEEE
Confidence 3467899998 9999999999999876 355555555
No 300
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=92.93 E-value=0.2 Score=40.13 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=35.2
Q ss_pred CCceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++||-|+||| -=+|.||=.+|+.|+..|+.+|++|..+|
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K 60 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIK 60 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeee
Confidence 3579999998 45899999999999999999999999976
No 301
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.93 E-value=0.1 Score=44.05 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=28.5
Q ss_pred ceeEEE--EeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904 6 FLHYFI--TGTNTNIGKTIISCALLSEFKKR------GISCIGMK 42 (233)
Q Consensus 6 ~~~i~i--~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d 42 (233)
...++| +|. +|+||||++..++..+..+ +..+.+++
T Consensus 50 ~~~~li~i~G~-~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 50 DVNMIYGSIGR-VGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CEEEEEECTTC-CSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEeCcCc-CCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 345666 777 9999999999999988764 66777765
No 302
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.91 E-value=0.1 Score=46.00 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.++|. +|+||||++..+|..+ |..+..++
T Consensus 77 ~~~lLL~Gp-pGtGKTtla~~la~~l---~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGP-PGIGKTTAAHLVAQEL---GYDILEQN 109 (516)
T ss_dssp CSEEEEECS-TTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 467888888 9999999999999887 77887775
No 303
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.89 E-value=0.12 Score=43.51 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=26.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...+.+.|. +|+|||+++..||..+ |.++..++
T Consensus 72 ~~~ill~Gp-~GtGKT~la~~la~~l---~~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGP-TGSGKTLMAQTLAKHL---DIPIAISD 104 (376)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHh---CCCEEEec
Confidence 346888998 9999999999999877 56666665
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.87 E-value=0.069 Score=41.19 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=23.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|+|+|. +|+||||++..|+ ++|.++.--|
T Consensus 34 g~~ilI~Gp-sGsGKStLA~~La----~~g~~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGD-SGVGKSETALELV----QRGHRLIADD 65 (205)
T ss_dssp TEEEEEECC-CTTTTHHHHHHHH----TTTCEEEESS
T ss_pred CEEEEEECC-CCCCHHHHHHHHH----HhCCeEEecc
Confidence 457889998 9999999887665 5566554433
No 305
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.77 E-value=0.1 Score=41.73 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=26.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.+.++|. +|+|||+++..++..+ |.+...++
T Consensus 63 ~~~~vLl~G~-~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGP-PHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SEEEEEEECS-TTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCeEEEEECC-CCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 3567888888 9999999999999874 55655554
No 306
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.70 E-value=0.073 Score=40.99 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+|+|+|. .|+||||++..|+..+
T Consensus 4 ~~i~i~G~-~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGP-AAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHT
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 36889998 9999999998887765
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.66 E-value=0.048 Score=42.58 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=16.3
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHH-HHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALL-SEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La-~~l 31 (233)
+.++++|+|+ .|+||||++..|+ ..+
T Consensus 26 ~G~ii~l~Gp-~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSP-SGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECS-CC----CHHHHHHC---
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHhcCC
Confidence 3468999999 9999999999888 665
No 308
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.54 E-value=0.085 Score=42.36 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=26.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..+|..+ +.++..+.
T Consensus 51 ~~~~ll~G~-~GtGKT~la~~la~~~---~~~~~~v~ 83 (285)
T 3h4m_A 51 PKGILLYGP-PGTGKTLLAKAVATET---NATFIRVV 83 (285)
T ss_dssp CSEEEEESS-SSSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 456888988 9999999999988765 55665554
No 309
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.54 E-value=0.11 Score=41.01 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=25.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+||||++..++..+ +..+..++
T Consensus 45 ~~~vll~G~-~GtGKT~la~~la~~~---~~~~~~i~ 77 (257)
T 1lv7_A 45 PKGVLMVGP-PGTGKTLLAKAIAGEA---KVPFFTIS 77 (257)
T ss_dssp CCEEEEECC-TTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred CCeEEEECc-CCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 346889998 9999999999999876 44555554
No 310
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.29 E-value=0.18 Score=46.69 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.|. +|+|||+++..|+..+...+.....++
T Consensus 523 ~~Ll~Gp-~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGP-TGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESC-TTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 6889998 999999999999999988888888887
No 311
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.27 E-value=0.12 Score=37.13 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La 28 (233)
|+.|++.|. +|+||||+...|.
T Consensus 1 ~~ki~v~G~-~~~GKSsli~~l~ 22 (161)
T 2dyk_A 1 MHKVVIVGR-PNVGKSSLFNRLL 22 (161)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHh
Confidence 456889997 8999999987766
No 312
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.14 E-value=0.12 Score=45.15 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
..+.+.|. +|+|||+++..||..+.+
T Consensus 202 ~~~LL~G~-pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 202 NNPVLIGE-PGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CEEEEESC-TTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECC-CCCCHHHHHHHHHHHHHh
Confidence 46778888 999999999999999976
No 313
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.05 E-value=0.15 Score=42.59 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=26.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||++|..||..+ |.+...++
T Consensus 51 ~~~vll~Gp-pGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 51 KSNILLIGP-TGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHc---CCCEEEec
Confidence 356888998 9999999999999887 55555554
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.04 E-value=0.11 Score=39.50 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=18.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.|.|+|+ +|+||||++..|...+
T Consensus 2 RpIVi~GP-SG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGP-SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHC
T ss_pred CEEEEECC-CCCCHHHHHHHHHHhC
Confidence 45788888 9999999987775544
No 315
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.03 E-value=0.16 Score=47.39 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=28.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d 42 (233)
...|.|. +|+|||++...++..|.+ .+.+|+++=
T Consensus 377 ~~lI~Gp-pGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGP-PGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 4566666 999999999999988876 688999975
No 316
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.98 E-value=0.11 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=25.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+||||++..++..+ +.....+.
T Consensus 54 ~~~vll~Gp-~GtGKT~la~~la~~~---~~~~~~i~ 86 (297)
T 3b9p_A 54 AKGLLLFGP-PGNGKTLLARAVATEC---SATFLNIS 86 (297)
T ss_dssp CSEEEEESS-SSSCHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCeEEEECc-CCCCHHHHHHHHHHHh---CCCeEEee
Confidence 467889998 9999999999998866 44554444
No 317
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.98 E-value=0.21 Score=41.85 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=26.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..+|..+ +..+..++
T Consensus 84 ~~~iLL~Gp-pGtGKT~la~ala~~~---~~~~~~v~ 116 (355)
T 2qp9_X 84 TSGILLYGP-PGTGKSYLAKAVATEA---NSTFFSVS 116 (355)
T ss_dssp CCCEEEECS-TTSCHHHHHHHHHHHH---TCEEEEEE
T ss_pred CceEEEECC-CCCcHHHHHHHHHHHh---CCCEEEee
Confidence 356888888 9999999999999887 55665555
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.96 E-value=0.17 Score=43.56 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=29.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+...+.|+|. .|+||||+...|+..+.....+|..+.
T Consensus 166 ~ggii~I~Gp-nGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 166 PHGIILVTGP-TGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp SSEEEEEECS-TTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred cCCeEEEECC-CCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 3457889998 999999999999998876655777664
No 319
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.96 E-value=0.12 Score=42.96 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
+.+.++|. +|+|||+++..++..+.
T Consensus 71 ~~vLl~Gp-pGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQ-PGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHHC
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHhc
Confidence 57899999 99999999999999985
No 320
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.86 E-value=0.083 Score=45.37 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=21.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.+.|.++|. +|+||||++..|+..+
T Consensus 257 ~~~lIil~G~-pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGF-PGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESC-TTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHhc
Confidence 3567888888 9999999998887644
No 321
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.84 E-value=0.15 Score=41.99 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=26.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..+|..+ +.++..++
T Consensus 51 ~~~vLl~Gp-pGtGKT~la~aia~~~---~~~~~~v~ 83 (322)
T 3eie_A 51 TSGILLYGP-PGTGKSYLAKAVATEA---NSTFFSVS 83 (322)
T ss_dssp CCEEEEECS-SSSCHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHH---CCCEEEEc
Confidence 457899998 9999999999998875 55666655
No 322
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.78 E-value=0.12 Score=42.17 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=25.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..+|..+ +.....++
T Consensus 49 ~~~vLL~Gp-~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLFYGP-PGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp CSEEEEECS-SSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CceEEEECC-CCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 457888988 9999999999999866 44554444
No 323
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.78 E-value=0.14 Score=42.50 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
..+.+.|+ +|+||||++..+|..+
T Consensus 52 ~~~ll~Gp-~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGP-PGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESS-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CCCcHHHHHHHHHHHh
Confidence 56888888 9999999999999887
No 324
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.76 E-value=0.12 Score=39.60 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
-.+++|.|. .|+||||+...|+..+.
T Consensus 20 Gei~~l~Gp-nGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGP-SAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHHHST
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhhCC
Confidence 468899999 99999999999988773
No 325
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.74 E-value=0.2 Score=41.88 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.+.+.|. +|+|||+++..+|..+ +..+..++
T Consensus 116 ~~~~vLl~Gp-pGtGKT~la~aia~~~---~~~~~~i~ 149 (357)
T 3d8b_A 116 PPKGILLFGP-PGTGKTLIGKCIASQS---GATFFSIS 149 (357)
T ss_dssp CCSEEEEESS-TTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCceEEEECC-CCCCHHHHHHHHHHHc---CCeEEEEe
Confidence 3567889988 9999999999998765 66666665
No 326
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.68 E-value=0.19 Score=47.13 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=29.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH-------cCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK-------RGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~-------~G~~Vl~~d 42 (233)
+.+.++|. +|+|||+++..||..+.. +|.++..++
T Consensus 192 ~~vlL~G~-pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 192 NNPVLIGE-PGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp CCCEEEEC-TTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CceEEEcC-CCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 45788888 999999999999999976 477777776
No 327
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.67 E-value=0.11 Score=40.31 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.++++|.|+ .|+||||+...|+..+
T Consensus 23 G~~~~lvGp-sGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGP-SGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhhC
Confidence 457899999 9999999999998877
No 328
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=91.64 E-value=1.3 Score=43.06 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=23.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRG 35 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G 35 (233)
...|+|.|. .++||||+.-.|.....+.|
T Consensus 296 ~lnIvIIGh-vDvGKSTLInrLt~~~~~~G 324 (1289)
T 3avx_A 296 HVNVGTIGH-VDHGKTTLTAAITTVLAKTY 324 (1289)
T ss_dssp EEEEEEEES-TTSSHHHHHHHHHHHHHHHS
T ss_pred eeEEEEEcC-CCCCHHHHHHHHHhhhcccc
Confidence 346888888 89999999999987766655
No 329
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.54 E-value=0.17 Score=41.53 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
-.+++|.|. .|+||||+...|+..+ .| +|.
T Consensus 126 Ge~vaIvGp-sGsGKSTLl~lL~gl~--~G-~I~ 155 (305)
T 2v9p_A 126 KNCLAFIGP-PNTGKSMLCNSLIHFL--GG-SVL 155 (305)
T ss_dssp CSEEEEECS-SSSSHHHHHHHHHHHH--TC-EEE
T ss_pred CCEEEEECC-CCCcHHHHHHHHhhhc--Cc-eEE
Confidence 468999999 8999999999999998 66 453
No 330
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.42 E-value=0.17 Score=37.24 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=22.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
-.++++.|. .|+||||+...|+..+
T Consensus 33 Ge~v~L~G~-nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGD-LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhC
Confidence 457899998 8999999999999998
No 331
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=91.39 E-value=0.24 Score=43.48 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=26.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.++|+|||+ -|||||+.-|+..|.+.|+++
T Consensus 122 ~~~IaVTGT---nGKTTTt~ml~~iL~~~g~~~ 151 (494)
T 4hv4_A 122 RHGIAVAGT---HGKTTTTAMLSSIYAEAGLDP 151 (494)
T ss_dssp SEEEEEECS---SSHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEecC---CChHHHHHHHHHHHHhcCCCC
Confidence 368999988 689999999999999999853
No 332
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.39 E-value=0.16 Score=40.31 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
|++|.+||. .|+||||++..|... .|.++
T Consensus 1 m~~i~ltG~-~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 1 MKLIFLSGV-KRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHH---SCEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHh---cCCeE
Confidence 368999986 999999999777543 46665
No 333
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.26 E-value=0.3 Score=42.24 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=27.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+-|.+.|+ +|+|||+++..+|..+ |.....++
T Consensus 214 ~prGvLL~GP-PGtGKTllAkAiA~e~---~~~~~~v~ 247 (437)
T 4b4t_L 214 PPKGVLLYGP-PGTGKTLLAKAVAATI---GANFIFSP 247 (437)
T ss_dssp CCCEEEEESC-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCeEEEECC-CCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 3467899999 9999999999999876 66666665
No 334
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.24 E-value=0.24 Score=38.44 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=25.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-|-.|.+||. -|+||||++.-|+ +.|..|.-.|
T Consensus 8 ~~~~iglTGg-igsGKStv~~~l~----~~g~~vidaD 40 (210)
T 4i1u_A 8 HMYAIGLTGG-IGSGKTTVADLFA----ARGASLVDTD 40 (210)
T ss_dssp SCCEEEEECC-TTSCHHHHHHHHH----HTTCEEEEHH
T ss_pred ceeEEEEECC-CCCCHHHHHHHHH----HCCCcEEECc
Confidence 3557999999 9999999987654 4688775444
No 335
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.96 E-value=0.16 Score=39.51 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+.++|+|+ .|+||||+...|+..+.
T Consensus 16 G~ii~l~Gp-sGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAP-SGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECC-TTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECC-CCCCHHHHHHHHhccCC
Confidence 457888888 99999999988887764
No 336
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.94 E-value=0.2 Score=46.97 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.++|. +|+|||+++..|+..+...+.....++
T Consensus 589 ~~vLl~Gp-~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGP-TGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp EEEEEBSC-SSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 47888888 999999999999999988787877776
No 337
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.92 E-value=0.13 Score=42.17 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=29.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|+|. +|+|||+++..++....+.+.....++
T Consensus 26 ~~vLi~Ge-~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 26 ATVLIHGD-SGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp SCEEEESC-TTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CcEEEECC-CCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 45788888 999999999999988777777777776
No 338
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.88 E-value=0.15 Score=40.28 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+-+++.|. +|+||||++..++..+
T Consensus 50 ~g~ll~G~-~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGP-PGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHh
Confidence 34888888 9999999999998876
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.79 E-value=0.14 Score=40.03 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=25.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...|+|.|. .|+||||++..|+.. +.+|.+..
T Consensus 20 g~~i~i~G~-~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 20 PFTVLIEGN-IGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp CEEEEEECS-TTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred ceEEEEECC-CCCCHHHHHHHHHhc----cCCeEEEe
Confidence 468999999 999999998888775 55676654
No 340
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.75 E-value=0.21 Score=43.09 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=27.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+-+.+.|+ +|+|||+++..+|..+ |.....++
T Consensus 206 prGiLL~GP-PGtGKT~lakAiA~~~---~~~~~~v~ 238 (428)
T 4b4t_K 206 PRGVLLYGP-PGTGKTMLVKAVANST---KAAFIRVN 238 (428)
T ss_dssp CCEEEEESC-TTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHh---CCCeEEEe
Confidence 457889999 9999999999999877 66666665
No 341
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.66 E-value=0.22 Score=39.20 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.|.|. +|+||||.|..|+..+
T Consensus 10 ~~~~~G~-pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGA-PGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred ceeeECC-CCCCHHHHHHHHHHHh
Confidence 5899999 9999999999999877
No 342
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.63 E-value=0.22 Score=40.58 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=25.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|+|. +|+|||+++..++..+ +.++..+.
T Consensus 39 ~~vll~G~-~GtGKT~la~~i~~~~---~~~~~~~~ 70 (324)
T 1hqc_A 39 EHLLLFGP-PGLGKTTLAHVIAHEL---GVNLRVTS 70 (324)
T ss_dssp CCCEEECC-TTCCCHHHHHHHHHHH---TCCEEEEC
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 56888888 9999999999999877 45554443
No 343
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.61 E-value=0.19 Score=44.81 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
..+++.|+|. ||+||||++..++...
T Consensus 146 ~~~~v~I~G~-~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 146 EPGWVTIHGM-AGCGKSVLAAEAVRDH 171 (591)
T ss_dssp SCEEEEEECC-TTSSHHHHHHHHHCCH
T ss_pred CCceEEEEcC-CCCCHHHHHHHHHhch
Confidence 3578999999 9999999999887654
No 344
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.56 E-value=0.26 Score=42.56 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=27.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.+.+.|. +|+|||+++..+|..+ .+..+..++
T Consensus 166 ~~~~vLL~Gp-pGtGKT~lA~aia~~~--~~~~~~~v~ 200 (444)
T 2zan_A 166 PWRGILLFGP-PGTGKSYLAKAVATEA--NNSTFFSIS 200 (444)
T ss_dssp CCSEEEEECS-TTSSHHHHHHHHHHHC--CSSEEEEEC
T ss_pred CCceEEEECC-CCCCHHHHHHHHHHHc--CCCCEEEEe
Confidence 3467899998 9999999999999876 355555554
No 345
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.41 E-value=0.1 Score=41.56 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.+.+.|. +|+|||+++..++..+
T Consensus 45 ~~vll~G~-~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGP-PGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCS-SCSSHHHHHHHHHHHH
T ss_pred ceEEEECC-CCCcHHHHHHHHHHHh
Confidence 45778888 9999999999999876
No 346
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.40 E-value=0.19 Score=41.39 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
...+.++|. +|+|||+++..++..+ +.+...+
T Consensus 55 ~~~vll~G~-~GtGKT~la~~ia~~~---~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGP-AGLGKTTLANIISYEM---SANIKTT 86 (338)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred CCeEEEECc-CCCCHHHHHHHHHHHh---CCCeEEe
Confidence 356889998 9999999999997764 4444443
No 347
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=90.37 E-value=0.28 Score=42.78 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=26.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.++|.|||+ -|||||+.-|+..|.+.|+++
T Consensus 118 ~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~p 147 (475)
T 1p3d_A 118 RHGIAVAGT---HGKTTTTAMISMIYTQAKLDP 147 (475)
T ss_dssp SEEEEEESS---SCHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHhCCCCC
Confidence 478999998 589999999999999999873
No 348
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.36 E-value=0.27 Score=41.28 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
...|++.|. +|+||||++..|+..+..
T Consensus 24 ~~~i~l~G~-~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 24 RVCVILVGS-PGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHHH
T ss_pred eeEEEEECC-CCCcHHHHHHHHHHHhCC
Confidence 446888888 999999999999998864
No 349
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.30 E-value=0.23 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
+.+.+.|+ +|+|||+++..+|..+.
T Consensus 64 ~~iLl~Gp-pGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGP-PGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHHC
T ss_pred CeEEEECC-CcCCHHHHHHHHHHHhC
Confidence 56888888 99999999999999974
No 350
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.18 E-value=0.21 Score=36.72 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=20.2
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La 28 (233)
|-+.+...|+|.|. +|+||||+...|.
T Consensus 1 m~~~~~~ki~~~G~-~~~GKSsli~~l~ 27 (181)
T 3t5g_A 1 MPQSKSRKIAILGY-RSVGKSSLTIQFV 27 (181)
T ss_dssp -CCEEEEEEEEEES-TTSSHHHHHHHHH
T ss_pred CCCCceEEEEEECc-CCCCHHHHHHHHH
Confidence 44444557889998 8999999987765
No 351
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.15 E-value=0.21 Score=37.67 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=19.8
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~ 29 (233)
|.+.. -.++|.|. .|+||||+...|+.
T Consensus 1 m~~~~-~kv~lvG~-~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 1 MYDYL-FKVVLIGD-SGVGKSNLLSRFTR 27 (199)
T ss_dssp CCSEE-EEEEEESS-TTSSHHHHHHHHHH
T ss_pred CCcce-EEEEEECc-CCCCHHHHHHHHhc
Confidence 44433 34788888 89999999877764
No 352
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.11 E-value=0.26 Score=42.59 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=27.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+-|.+.|+ +|+|||+++..+|..+ |.....++
T Consensus 215 prGvLLyGP-PGTGKTllAkAiA~e~---~~~f~~v~ 247 (434)
T 4b4t_M 215 PKGALMYGP-PGTGKTLLARACAAQT---NATFLKLA 247 (434)
T ss_dssp CCEEEEESC-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCeeEEECc-CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 467899999 9999999999998876 66666665
No 353
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.06 E-value=0.18 Score=41.75 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=24.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.+.+.|. +|+||||++..++..+...+.++
T Consensus 48 ~~ll~Gp-~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 48 HLLFYGP-PGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp CEEEECS-SSSSHHHHHHHHHHHHHTTSHHH
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHcCCCccc
Confidence 3778888 99999999999999987554443
No 354
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=90.04 E-value=0.099 Score=43.69 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=28.5
Q ss_pred ceeEEEEeCCCCCcHHHHH-HHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIIS-CALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a-~~La~~l~~~G~~Vl~~d 42 (233)
...|+|-|. =|+||||++ ..|+..|..+|. |.++.
T Consensus 12 ~~~I~iEG~-~GaGKTT~~~~~L~~~l~~~g~-vv~tr 47 (341)
T 1osn_A 12 VLRIYLDGA-YGIGKTTAAEEFLHHFAITPNR-ILLIG 47 (341)
T ss_dssp EEEEEEEES-SSSCTTHHHHHHHHTTTTSGGG-EEEEC
T ss_pred ceEEEEeCC-CCCCHHHHHHHHHHHHHhhCCc-EEEEe
Confidence 357888888 899999999 999999988884 66654
No 355
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.02 E-value=0.33 Score=36.06 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=44.5
Q ss_pred CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC-cHHHHHHHHHHHHh-CCCcEEEEEEcccCCCch-hhh
Q psy14904 117 TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG-CINNALLSLEAINS-RGLKLIGWVANHTQIVDT-LFA 193 (233)
Q Consensus 117 ~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~-~~~~~~~~~~~l~~-~~~~i~GiVlN~~~~~~~-~~~ 193 (233)
+.+.|+|+||.-. . ...........+ .+++|.+.... +.......+..+.. .+.+ +-+|+||++ ... ...
T Consensus 93 ~~~~i~Dt~G~~~--~--~~~~~~~~~~~d-~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D-~~~~~~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQER--Y--ASIVPLYYRGAT-CAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKID-KNKFQVD 165 (208)
T ss_dssp EEEEEEECTTGGG--C--TTTHHHHHTTCS-EEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTT-CC-CCSC
T ss_pred eEEEEEECCCcHH--H--HHHHHHHhcCCC-EEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCC-cccccCC
Confidence 7899999987421 1 112223333333 57777776543 34444444444443 4545 558899998 421 111
Q ss_pred hhhHHHHHhhcCCCce
Q psy14904 194 NENYIELTKYLNVTPL 209 (233)
Q Consensus 194 ~~~~~~l~~~~~~pvl 209 (233)
.+..+.+.+..+++++
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 166 ILEVQKYAQDNNLLFI 181 (208)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCcEE
Confidence 2223333334577766
No 356
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.99 E-value=0.2 Score=37.14 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCA 26 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~ 26 (233)
..++++.|. .|+||||++..
T Consensus 9 gei~~l~G~-nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGS-SGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECC-TTSCHHHHHHH
T ss_pred CEEEEEECC-CCCCHHHHHHH
Confidence 457889998 99999999975
No 357
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.97 E-value=0.41 Score=39.20 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|+|. .|+|||++...++..+ +.++.+++
T Consensus 31 ~~v~i~G~-~G~GKT~L~~~~~~~~---~~~~~~~~ 62 (357)
T 2fna_A 31 PITLVLGL-RRTGKSSIIKIGINEL---NLPYIYLD 62 (357)
T ss_dssp SEEEEEES-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred CcEEEECC-CCCCHHHHHHHHHHhc---CCCEEEEE
Confidence 47888888 9999999999888775 34567776
No 358
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=89.95 E-value=0.34 Score=42.40 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=26.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.++|.|||+ -|||||+.-|+..|.+.|+++
T Consensus 119 ~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~p 148 (491)
T 2f00_A 119 RHGIAIAGT---HGKTTTTAMVSSIYAEAGLDP 148 (491)
T ss_dssp SEEEEEESS---SCHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHhCCCCC
Confidence 478999998 589999999999999999873
No 359
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.81 E-value=0.23 Score=39.57 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=18.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La 28 (233)
|+.|++.|. +|+||||+.-.|.
T Consensus 1 m~kI~lvG~-~n~GKSTL~n~L~ 22 (256)
T 3iby_A 1 MTHALLIGN-PNCGKTTLFNALT 22 (256)
T ss_dssp -CEEEEEES-TTSSHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHH
Confidence 467899998 9999999987773
No 360
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.72 E-value=0.26 Score=42.13 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=27.5
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+-+.+.|+ +|+|||++|..+|..+ |.....++
T Consensus 181 ~prGvLL~GP-PGTGKTllAkAiA~e~---~~~f~~v~ 214 (405)
T 4b4t_J 181 QPKGVILYGP-PGTGKTLLARAVAHHT---DCKFIRVS 214 (405)
T ss_dssp CCCCEEEESC-SSSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCceEEeCC-CCCCHHHHHHHHHHhh---CCCceEEE
Confidence 3467889999 9999999999998876 66666665
No 361
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=89.63 E-value=0.37 Score=43.36 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcC----CeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRG----ISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G----~~Vl~~d 42 (233)
.+.|.+. +|+|||++....+.++.+.+ .+++++-
T Consensus 24 ~~lV~a~-aGsGKT~~l~~ri~~l~~~~~~~~~~iL~lt 61 (647)
T 3lfu_A 24 NLLVLAG-AGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 (647)
T ss_dssp CEEEEEC-TTSCHHHHHHHHHHHHHHTSCCCGGGEEEEE
T ss_pred CEEEEEC-CCCCHHHHHHHHHHHHHHhCCCChhhEEEEe
Confidence 4566676 89999999999888887763 5888763
No 362
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.62 E-value=0.21 Score=40.27 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=23.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-+.+.|. +|+||||++..||..+ +.....++
T Consensus 46 GvlL~Gp-~GtGKTtLakala~~~---~~~~i~i~ 76 (274)
T 2x8a_A 46 GVLLAGP-PGCGKTLLAKAVANES---GLNFISVK 76 (274)
T ss_dssp EEEEESS-TTSCHHHHHHHHHHHT---TCEEEEEE
T ss_pred eEEEECC-CCCcHHHHHHHHHHHc---CCCEEEEE
Confidence 4888888 9999999999998865 33444444
No 363
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.60 E-value=0.39 Score=40.97 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=27.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC 38 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V 38 (233)
.+.+.|.|. .|+||||++..|+..+++++..+
T Consensus 174 GQr~~IvG~-sG~GKTtLl~~Iar~i~~~~~~v 205 (422)
T 3ice_A 174 GQRGLIVAP-PKAGKTMLLQNIAQSIAYNHPDC 205 (422)
T ss_dssp TCEEEEECC-SSSSHHHHHHHHHHHHHHHCTTS
T ss_pred CcEEEEecC-CCCChhHHHHHHHHHHhhcCCCe
Confidence 457889998 89999999999999998876544
No 364
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.58 E-value=0.3 Score=39.65 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRG 35 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G 35 (233)
+.+.+.|. +|+||||++..++..+...+
T Consensus 47 ~~~ll~G~-~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 47 PHLLFAGP-PGVGKTTAALALARELFGEN 74 (327)
T ss_dssp CEEEEESC-TTSSHHHHHHHHHHHHHGGG
T ss_pred CeEEEECc-CCCCHHHHHHHHHHHhcCCc
Confidence 35788888 99999999999999986544
No 365
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.52 E-value=0.22 Score=39.92 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
-+++.|. +|+||||++..|+..+.
T Consensus 75 gvll~Gp-~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 75 GVLLVGP-PGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHTT
T ss_pred eEEEECC-CcChHHHHHHHHHHHcC
Confidence 4888888 99999999999998763
No 366
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=89.52 E-value=0.24 Score=41.90 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|+|-|. -|+||||++..|+..|..+| |.+..
T Consensus 51 fIt~EG~-dGsGKTT~~~~Lae~L~~~g--vv~tr 82 (376)
T 1of1_A 51 RVYIDGP-HGMGKTTTTQLLVALGSRDD--IVYVP 82 (376)
T ss_dssp EEEECSS-TTSSHHHHHHHHHC----CC--EEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhhhCC--EEEEe
Confidence 4677777 89999999999999998887 55554
No 367
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.49 E-value=0.49 Score=43.64 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=27.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
...+.+.|. +|+|||+++..|+..+ |.+...++
T Consensus 488 ~~~~ll~G~-~GtGKT~la~~la~~l---~~~~~~i~ 520 (758)
T 1r6b_X 488 VGSFLFAGP-TGVGKTEVTVQLSKAL---GIELLRFD 520 (758)
T ss_dssp SEEEEEECS-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred ceEEEEECC-CCCcHHHHHHHHHHHh---cCCEEEEe
Confidence 346888988 9999999999999988 56666666
No 368
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.44 E-value=0.14 Score=43.02 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=26.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
-..++|+|. .|+||||+...|+..+......|.+
T Consensus 175 G~~i~ivG~-sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 175 ERVIVVAGE-TGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp TCCEEEEES-SSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhcCCCCceEEEE
Confidence 357899998 8999999999998877654434444
No 369
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.39 E-value=0.24 Score=43.17 Aligned_cols=36 Identities=25% Similarity=0.127 Sum_probs=27.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d 42 (233)
-.+++|.|. .|+||||++..|+..+...+- ++.+++
T Consensus 138 Ge~v~IvGp-nGsGKSTLlr~L~Gl~~p~~G~~pI~vd 174 (460)
T 2npi_A 138 GPRVVIVGG-SQTGKTSLSRTLCSYALKFNAYQPLYIN 174 (460)
T ss_dssp CCCEEEEES-TTSSHHHHHHHHHHTTHHHHCCCCEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHhCcccccCCceeEEEc
Confidence 467999999 999999999999998876543 533443
No 370
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=89.30 E-value=0.21 Score=41.51 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=23.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|+|-|. -|+||||.+..|+..|..+| |.+..
T Consensus 5 ~fI~~EG~-dGsGKTT~~~~La~~L~~~g--v~~tr 37 (331)
T 1e2k_A 5 LRVYIDGP-HGMGKTTTTQLLVALGSRDD--IVYVP 37 (331)
T ss_dssp EEEEECSC-TTSSHHHHHHHHTC----CC--EEEEC
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHhhhCC--EEEEe
Confidence 46777777 89999999999999998887 55554
No 371
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.27 E-value=0.34 Score=35.31 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
-+++|.+.......+....++.+...+.+ +-+|+||.+
T Consensus 81 ~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D 118 (178)
T 2lkc_A 81 IVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMD 118 (178)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTT
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECcc
Confidence 36777766544434444555666666777 458899998
No 372
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=89.25 E-value=0.31 Score=37.32 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=28.3
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK 42 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d 42 (233)
+.|||++.|||..||.|+ .++..|+ ++|++|.+++
T Consensus 2 ~~mmk~vlVtGasg~iG~-----~~~~~l~~~~g~~V~~~~ 37 (221)
T 3r6d_A 2 NAMYXYITILGAAGQIAQ-----XLTATLLTYTDMHITLYG 37 (221)
T ss_dssp CCSCSEEEEESTTSHHHH-----HHHHHHHHHCCCEEEEEE
T ss_pred CceEEEEEEEeCCcHHHH-----HHHHHHHhcCCceEEEEe
Confidence 346788999998899886 5666777 7999998875
No 373
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=89.25 E-value=0.46 Score=38.05 Aligned_cols=35 Identities=14% Similarity=-0.108 Sum_probs=29.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.++.|++. +|+||||++...+..-+++|.+++++-
T Consensus 22 s~~li~g~-p~~~~~~l~~qfl~~g~~~Ge~~~~~~ 56 (260)
T 3bs4_A 22 LILIHEED-ASSRGKDILFYILSRKLKSDNLVGMFS 56 (260)
T ss_dssp EEEEEECS-GGGCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEeC-CCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 45666555 888888999999999999999999985
No 374
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.22 E-value=0.39 Score=39.23 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=24.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+++.+..+|+|||+++..++..+ +.++..++
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~ 80 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV---NADMMFVN 80 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEc
Confidence 344445559999999999998776 66777766
No 375
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=89.18 E-value=0.34 Score=41.98 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=26.7
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
+.++|.|||+ -|||||+.-|+..|.+.| ++.
T Consensus 99 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g-~~~ 129 (452)
T 1gg4_A 99 PARVVALTGS---SGKTSVKEMTAAILSQCG-NTL 129 (452)
T ss_dssp CCEEEEEECS---SCHHHHHHHHHHHHTTTS-CEE
T ss_pred CCCEEEEeCC---CCcHHHHHHHHHHHHhcC-CEe
Confidence 4689999988 689999999999999999 444
No 376
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.17 E-value=0.3 Score=40.23 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
..+.+.|. +|+||||++..++..+..
T Consensus 59 ~~~ll~G~-~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 59 PHMLFYGP-PGTGKTSTILALTKELYG 84 (353)
T ss_dssp CCEEEECS-TTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHhCC
Confidence 34788888 999999999999999864
No 377
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=89.16 E-value=0.3 Score=40.21 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCCCC-ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKN-FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~-~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||.+| ||++.+++. .| |=...+..|+.+|+++|++|.++-
T Consensus 1 mM~~m~mkIl~~~~~-~g-G~~~~~~~la~~L~~~G~~V~v~~ 41 (364)
T 1f0k_A 1 MMSGQGKRLMVMAGG-TG-GHVFPGLAVAHHLMAQGWQVRWLG 41 (364)
T ss_dssp ------CEEEEECCS-SH-HHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCC-Cc-cchhHHHHHHHHHHHcCCEEEEEe
Confidence 67775 787777543 33 677778899999999999999874
No 378
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.11 E-value=0.35 Score=40.09 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=21.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
+.+.++|. .|+||||++..++..+..
T Consensus 39 ~~~ll~G~-~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGT-RGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESC-TTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHhCC
Confidence 35778887 999999999999988853
No 379
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=89.11 E-value=0.32 Score=38.44 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=30.1
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+.-..|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 1 M~~l~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~ 37 (256)
T 2d1y_A 1 MGLFAGKGVLVTGGARGIGR-----AIAQAFAREGALVALCD 37 (256)
T ss_dssp -CTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 55555689999999999887 57788899999998876
No 380
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.98 E-value=0.36 Score=40.91 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
.+.+.|.|+ +|+||||++..|+..+
T Consensus 169 ~~~i~l~G~-~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGP-IDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhhc
Confidence 457888888 9999999999999764
No 381
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.98 E-value=0.34 Score=34.62 Aligned_cols=89 Identities=11% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC-CcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCch
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI-GCINNALLSLEAIN----SRGLKLIGWVANHTQIVDT 190 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~-~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~ 190 (233)
.+++.++|+||.-.. ...........+ .+++|.+... .+..++....+.+. ..+.+++ +|+||++-...
T Consensus 50 ~~~~~~~D~~G~~~~----~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~nK~Dl~~~ 123 (166)
T 2ce2_X 50 TCLLDILDTAGQEEY----SAMRDQYMRTGE-GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV-LVGNKSDLAAR 123 (166)
T ss_dssp EEEEEEEECCCCSSC----CHHHHHHHHHCS-EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCSCC
T ss_pred EEEEEEEECCCchhh----hHHHHHhhccCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEchhhhhc
Confidence 467899999864210 111222333333 4666666543 23333333333332 2367744 88999982211
Q ss_pred hhhhhhHHHHHhhcCCCceE
Q psy14904 191 LFANENYIELTKYLNVTPLG 210 (233)
Q Consensus 191 ~~~~~~~~~l~~~~~~pvlg 210 (233)
....+..+.+.+..+.+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 2ce2_X 124 TVESRQAQDLARSYGIPYIE 143 (166)
T ss_dssp CSCHHHHHHHHHHHTCCEEE
T ss_pred ccCHHHHHHHHHHcCCeEEE
Confidence 12233444555556888774
No 382
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.92 E-value=0.4 Score=34.65 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=16.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La 28 (233)
..|+|.|. +|+||||+...|.
T Consensus 8 ~~i~v~G~-~~~GKssl~~~l~ 28 (171)
T 1upt_A 8 MRILILGL-DGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEEECS-TTSSHHHHHHHHH
T ss_pred cEEEEECC-CCCCHHHHHHHHh
Confidence 35788887 8999999987763
No 383
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.89 E-value=0.35 Score=35.38 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=17.5
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La 28 (233)
.++.-.|+|.|. +|+||||+...+.
T Consensus 5 ~~~~~ki~v~G~-~~~GKssl~~~~~ 29 (182)
T 3bwd_D 5 ASRFIKCVTVGD-GAVGKTCLLISYT 29 (182)
T ss_dssp --CCCEEEEECS-TTSSHHHHHHHHH
T ss_pred CCceEEEEEECC-CCCCHHHHHHHHh
Confidence 333445888887 9999999986554
No 384
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.86 E-value=0.29 Score=40.48 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
+.+.++|. .|+||||++..|+..+.
T Consensus 37 ~~~ll~Gp-~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 37 PHLLLYGP-NGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCEEEECS-TTSSHHHHHHTHHHHHS
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHc
Confidence 34888888 99999999999999763
No 385
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.79 E-value=0.36 Score=39.05 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=23.6
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGI 36 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~ 36 (233)
+.+.++|. +|+|||+++..++..+...+.
T Consensus 43 ~~~ll~G~-~G~GKt~la~~l~~~l~~~~~ 71 (323)
T 1sxj_B 43 PHMIISGM-PGIGKTTSVHCLAHELLGRSY 71 (323)
T ss_dssp CCEEEECS-TTSSHHHHHHHHHHHHHGGGH
T ss_pred CeEEEECc-CCCCHHHHHHHHHHHhcCCcc
Confidence 34778887 999999999999999865443
No 386
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=88.74 E-value=0.29 Score=38.53 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=28.5
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 20 ~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~ 53 (251)
T 3orf_A 20 HMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISID 53 (251)
T ss_dssp --CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred ccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 45689999999888886 78889999999999886
No 387
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.73 E-value=0.32 Score=42.33 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+-|.+.|+ +|+|||+++..+|..+ |.....++
T Consensus 242 pprGILLyGP-PGTGKTlLAkAiA~e~---~~~fi~vs 275 (467)
T 4b4t_H 242 PPKGILLYGP-PGTGKTLCARAVANRT---DATFIRVI 275 (467)
T ss_dssp CCSEEEECSC-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCceEeeCC-CCCcHHHHHHHHHhcc---CCCeEEEE
Confidence 4567889999 9999999999998876 55555554
No 388
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.62 E-value=0.4 Score=38.74 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=23.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGI 36 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~ 36 (233)
+.+.++|. +|+|||+++..++..+...+.
T Consensus 39 ~~~ll~G~-~G~GKt~la~~l~~~l~~~~~ 67 (319)
T 2chq_A 39 PHLLFSGP-PGTGKTATAIALARDLFGENW 67 (319)
T ss_dssp CCEEEESS-SSSSHHHHHHHHHHHHHTTCH
T ss_pred CeEEEECc-CCcCHHHHHHHHHHHhcCCcc
Confidence 35788888 999999999999999865443
No 389
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.55 E-value=0.41 Score=35.58 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La 28 (233)
...|+|.|. +|+||||+...|.
T Consensus 23 ~~~i~v~G~-~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALAGR-SNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEEEB-TTSSHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHh
Confidence 456889998 8999999987764
No 390
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.54 E-value=0.4 Score=35.84 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=42.6
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC-CcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCch
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI-GCINNALLSLEAIN----SRGLKLIGWVANHTQIVDT 190 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~-~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~ 190 (233)
.+.+.++|+||.-. ...........+ .+++|.+... .++..+....+.+. ..+.+++ +|.||++ -..
T Consensus 75 ~~~~~l~Dt~G~~~-----~~~~~~~~~~~d-~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~D-l~~ 146 (196)
T 2atv_A 75 VVSMEILDTAGQED-----TIQREGHMRWGE-GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI-LVGNKAD-LDH 146 (196)
T ss_dssp EEEEEEEECCCCCC-----CHHHHHHHHHCS-EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE-EEEECGG-GGG
T ss_pred EEEEEEEECCCCCc-----ccchhhhhccCC-EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE-EEEECcc-ccc
Confidence 46688899976432 111222333333 4677776653 24443333333332 2466644 8899998 211
Q ss_pred --hhhhhhHHHHHhhcCCCce
Q psy14904 191 --LFANENYIELTKYLNVTPL 209 (233)
Q Consensus 191 --~~~~~~~~~l~~~~~~pvl 209 (233)
....+....+.+..+.+++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~ 167 (196)
T 2atv_A 147 SRQVSTEEGEKLATELACAFY 167 (196)
T ss_dssp GCCSCHHHHHHHHHHHTSEEE
T ss_pred ccccCHHHHHHHHHHhCCeEE
Confidence 1112223344444577666
No 391
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=88.52 E-value=0.33 Score=39.12 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=28.4
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+..+.|++.|||..+|.|+ .+|..|+++|.+|.+++
T Consensus 23 m~~~~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~ 59 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGR-----ATALALAADGVTVGALG 59 (283)
T ss_dssp ----CCCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred hcCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 44445689999999888886 57788999999999876
No 392
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.47 E-value=0.34 Score=35.44 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.4
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~ 29 (233)
-.|++.|. +||||||+...|..
T Consensus 8 ~ki~~vG~-~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGD-ARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECC-GGGCHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHh
Confidence 35788888 89999998876653
No 393
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.43 E-value=0.36 Score=42.92 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+.+.+.|. +|+||||++..++..+.
T Consensus 108 g~~vll~Gp-~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 108 GPILCLAGP-PGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SCEEEEESS-SSSSHHHHHHHHHHHHT
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhcC
Confidence 457888998 99999999999999883
No 394
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.29 E-value=0.3 Score=42.29 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.+.+.|. +|+||||++..++..+
T Consensus 51 ~~vLL~Gp-pGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGP-PGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred cEEEEECC-CCCcHHHHHHHHHHHh
Confidence 46888888 9999999999998876
No 395
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.26 E-value=0.31 Score=42.24 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=26.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|.+.|. +|+||||++..||..+ |.....++
T Consensus 50 ~~~iLl~Gp-pGtGKT~lar~lA~~l---~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGP-TGVGKTEIARRLAKLA---NAPFIKVE 82 (444)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CceEEEEcC-CCCCHHHHHHHHHHHc---CCCceeec
Confidence 456889998 9999999999999877 55555555
No 396
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=88.18 E-value=0.29 Score=37.89 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=26.2
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~ 32 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTG 32 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEE
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEe
Confidence 578999999888887 66778899999999876
No 397
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=88.14 E-value=0.18 Score=38.95 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=28.8
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+..+.|++.|||..+|.|+ .++..|+++|++|.+.+
T Consensus 1 M~~~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~ 37 (223)
T 3uce_A 1 MMGSDKTVYVVLGGTSGIGA-----ELAKQLESEHTIVHVAS 37 (223)
T ss_dssp ----CCEEEEEETTTSHHHH-----HHHHHHCSTTEEEEEES
T ss_pred CCCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEec
Confidence 66667789999999898887 56778899999999876
No 398
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.14 E-value=0.38 Score=44.47 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
.+.+.+.|. +|+|||+++..||..+..
T Consensus 201 ~~~vLL~G~-pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 201 KNNPVLIGE-PGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SCEEEEESC-TTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECC-CCCCHHHHHHHHHHHHhc
Confidence 346788888 999999999999999843
No 399
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.04 E-value=0.31 Score=40.82 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=22.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
.+.++|.|. .|+||||+...|+..+.-
T Consensus 170 g~k~~IvG~-nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGG-ESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECC-TTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECC-CCCCHHHHHHHHHHHhCC
Confidence 457899998 899999999999988753
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.02 E-value=0.21 Score=44.15 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=25.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM 41 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~ 41 (233)
...+.|+|. .|+||||+...|+..+... .++..+
T Consensus 260 g~~i~I~Gp-tGSGKTTlL~aL~~~i~~~-~giiti 293 (511)
T 2oap_1 260 KFSAIVVGE-TASGKTTTLNAIMMFIPPD-AKVVSI 293 (511)
T ss_dssp TCCEEEEES-TTSSHHHHHHHHGGGSCTT-CCEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhhCCCC-CCEEEE
Confidence 346899998 9999999999888877443 344443
No 401
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.01 E-value=0.39 Score=35.55 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=17.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~ 29 (233)
.|+|.|. +|+||||+...|..
T Consensus 23 ki~vvG~-~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGA-GGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECS-TTSSHHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHHc
Confidence 5778887 99999999888763
No 402
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.00 E-value=0.18 Score=41.92 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=26.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
...++|+|. .|+||||+...|+..+......|.+
T Consensus 171 g~~v~i~G~-~GsGKTTll~~l~g~~~~~~g~i~i 204 (330)
T 2pt7_A 171 GKNVIVCGG-TGSGKTTYIKSIMEFIPKEERIISI 204 (330)
T ss_dssp TCCEEEEES-TTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHhCCCcCCCcEEEE
Confidence 357899998 8999999998888887654444444
No 403
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.95 E-value=1.8 Score=30.65 Aligned_cols=20 Identities=20% Similarity=0.562 Sum_probs=16.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La 28 (233)
.|++.|. +|+||||+...|.
T Consensus 5 ~i~v~G~-~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGA-GGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEES-TTSSHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHH
Confidence 4778887 9999999987765
No 404
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=87.94 E-value=0.44 Score=35.85 Aligned_cols=88 Identities=8% Similarity=-0.000 Sum_probs=43.2
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC-CcHHHHHHHHHHHHh----CCCcEEEEEEcccCCCc-
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI-GCINNALLSLEAINS----RGLKLIGWVANHTQIVD- 189 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~-~~~~~~~~~~~~l~~----~~~~i~GiVlN~~~~~~- 189 (233)
.+.+.|+|+||.-.. . . ......... ..+++|.+... .++..+....+.+.+ .+.++ -+|.||++-..
T Consensus 71 ~~~~~l~Dt~G~~~~--~-~-~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~ 144 (201)
T 3oes_A 71 EFHLHLVDTAGQDEY--S-I-LPYSFIIGV-HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADLSPE 144 (201)
T ss_dssp CEEEEEEEECCCCTT--C-C-CCGGGTTTC-CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE-EEEEECTTCGGG
T ss_pred EEEEEEEECCCccch--H-H-HHHHHHhcC-CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccCccc
Confidence 567889999864311 0 0 111112222 24666666553 244444444444432 35664 48899998211
Q ss_pred hhhhhhhHHHHHhhcCCCce
Q psy14904 190 TLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 190 ~~~~~~~~~~l~~~~~~pvl 209 (233)
........+.+.+..+.+++
T Consensus 145 ~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 145 REVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp CCSCHHHHHHHHHHHTCEEE
T ss_pred cccCHHHHHHHHHHhCCeEE
Confidence 11112333445555677665
No 405
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=87.94 E-value=0.42 Score=37.71 Aligned_cols=36 Identities=17% Similarity=0.462 Sum_probs=29.4
Q ss_pred CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.-+.|++.|||..+|.|+ .++..|+++|.+|.+++
T Consensus 3 ~~l~~k~~lVTGas~gIG~-----aia~~l~~~G~~V~~~~ 38 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGA-----AVTRMLAQEGATVLGLD 38 (257)
T ss_dssp -CCTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred cccCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 3445589999999998887 57888999999999876
No 406
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.86 E-value=0.45 Score=34.70 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=17.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La 28 (233)
...|+|.|. +|+||||+...|.
T Consensus 8 ~~~i~v~G~-~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGD-SGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECC-TTSSHHHHHHHHH
T ss_pred eEEEEEECC-CCCCHHHHHHHHH
Confidence 346888887 9999999987665
No 407
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.82 E-value=0.5 Score=39.03 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
.+.+.++|. .|+|||+++..+|..+...
T Consensus 24 ~~a~L~~G~-~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQAL-PGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECC-TTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECC-CCchHHHHHHHHHHHHhCC
Confidence 345788888 9999999999999998643
No 408
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=87.82 E-value=0.43 Score=37.71 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=28.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 7 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~ 39 (259)
T 4e6p_A 7 EGKSALITGSARGIGR-----AFAEAYVREGATVAIAD 39 (259)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 4579999999888887 67888999999999876
No 409
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=87.81 E-value=0.45 Score=38.05 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=30.6
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|..-+.|++.|||..+|.|+ .+|..|+++|.+|.+++
T Consensus 5 m~~l~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~ 41 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGR-----SHAVKLAEEGADIILFD 41 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred ccccCCCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEc
Confidence 44445689999999888886 68888999999999986
No 410
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.72 E-value=0.17 Score=41.59 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
..+.+.|. +|+|||+++..++..+
T Consensus 47 ~~vll~G~-pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGV-PGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESC-CCHHHHHHHHHHHHHT
T ss_pred CeEEEECC-CCCcHHHHHHHHHHHh
Confidence 35788888 9999999999999877
No 411
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=87.67 E-value=0.19 Score=40.02 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..+.|++.|||..+|.|+ .++..|+++|++|.+.+
T Consensus 25 ~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~ 59 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATS 59 (260)
T ss_dssp HTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 334579999999898886 67788999999999986
No 412
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=87.64 E-value=3 Score=35.02 Aligned_cols=65 Identities=9% Similarity=-0.069 Sum_probs=40.5
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEc-ccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVAN-HTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN-~~~ 186 (233)
++.+.|+||||.-. +. .....-+... .-+++|.+ ..+...++......++..+++..-+++| |++
T Consensus 59 ~~~i~iiDtPGh~~--f~--~~~~~~~~~a-D~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~D 124 (370)
T 2elf_A 59 GRNMVFVDAHSYPK--TL--KSLITALNIS-DIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDS 124 (370)
T ss_dssp SSEEEEEECTTTTT--CH--HHHHHHHHTC-SEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGG
T ss_pred CeEEEEEECCChHH--HH--HHHHHHHHHC-CEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 45699999987531 00 0111122223 35677777 6555566666666777788887567899 998
No 413
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=87.62 E-value=0.6 Score=38.29 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.-+.|++.|||..+|.|+ .++..|+++|++|.+.+
T Consensus 5 ~l~~k~vlVTGas~gIG~-----~la~~l~~~G~~Vv~~~ 39 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGI-----GLVRQLLNQGCKVAIAD 39 (319)
T ss_dssp CCTTCEEEEETTTSTHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEcCCchHHHH-----HHHHHHHHCCCEEEEEE
Confidence 334579999999999887 67788889999998875
No 414
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.62 E-value=0.47 Score=40.87 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=26.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+-|.+.|+ +|+|||++|..+|..+ |.....++
T Consensus 216 prGvLLyGP-PGTGKTlLAkAiA~e~---~~~fi~v~ 248 (437)
T 4b4t_I 216 PKGVILYGA-PGTGKTLLAKAVANQT---SATFLRIV 248 (437)
T ss_dssp CSEEEEESS-TTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCCceECC-CCchHHHHHHHHHHHh---CCCEEEEE
Confidence 467889999 9999999999999876 55555554
No 415
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.55 E-value=0.59 Score=34.00 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=43.8
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC-CcHHHHHHHHHHH----HhCCCcEEEEEEcccCCCc-
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI-GCINNALLSLEAI----NSRGLKLIGWVANHTQIVD- 189 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~-~~~~~~~~~~~~l----~~~~~~i~GiVlN~~~~~~- 189 (233)
.+.+.++|+||.-. . ...........+ .+++|.+... .++..+....+.+ ...+.++ -+|+||.+-..
T Consensus 56 ~~~~~~~Dt~G~~~--~--~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~ 129 (181)
T 2fn4_A 56 PARLDILDTAGQEE--F--GAMREQYMRAGH-GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV-VLVGNKADLESQ 129 (181)
T ss_dssp EEEEEEEECCCTTT--T--SCCHHHHHHHCS-EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE-EEEEECGGGGGG
T ss_pred EEEEEEEECCCchh--h--HHHHHHHHhhCC-EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccccc
Confidence 35678999986421 1 112333344433 4666666553 2344433333333 2346674 48899998211
Q ss_pred hhhhhhhHHHHHhhcCCCce
Q psy14904 190 TLFANENYIELTKYLNVTPL 209 (233)
Q Consensus 190 ~~~~~~~~~~l~~~~~~pvl 209 (233)
.....+..+.+.+..+.+++
T Consensus 130 ~~v~~~~~~~~~~~~~~~~~ 149 (181)
T 2fn4_A 130 RQVPRSEASAFGASHHVAYF 149 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEEE
T ss_pred cccCHHHHHHHHHHcCCeEE
Confidence 11112333444445576665
No 416
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=87.50 E-value=0.41 Score=38.49 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-+.|++.|||..+|.|+ .+|..|+++|.+|.+.+
T Consensus 23 l~~k~~lVTGas~GIG~-----~ia~~la~~G~~V~~~~ 56 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGL-----AIARTLAKAGANIVLNG 56 (281)
T ss_dssp CTTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEC
T ss_pred cCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 34589999999888887 67888999999999875
No 417
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.43 E-value=0.41 Score=36.23 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.1
Q ss_pred eeEEEEeCCCCCcHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La 28 (233)
..|+|.|. +|+||||+...|.
T Consensus 26 ~ki~vvG~-~~~GKSsli~~l~ 46 (207)
T 2fv8_A 26 KKLVVVGD-GACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEEC-TTSSHHHHHHHHH
T ss_pred cEEEEECc-CCCCHHHHHHHHh
Confidence 35888888 9999999986654
No 418
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=87.36 E-value=0.5 Score=36.90 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 11 ~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~ 42 (254)
T 2wsb_A 11 GACAAVTGAGSGIGL-----EICRAFAASGARLILID 42 (254)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 478999999888887 67888899999999876
No 419
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=87.31 E-value=0.47 Score=37.93 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=29.9
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|..-+.|++.|||..+|.|+ .+|..|+++|.+|.+++
T Consensus 5 m~~l~~k~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~ 41 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGR-----SHAVALAEAGADIAICD 41 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred ccccCCCEEEEeCCCchHHH-----HHHHHHHHCCCeEEEEe
Confidence 34445689999999888886 67888999999999987
No 420
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.28 E-value=0.48 Score=34.04 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=43.5
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC-cHHHHHHHHHHHHh--CCCcEEEEEEcccCCCch--
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG-CINNALLSLEAINS--RGLKLIGWVANHTQIVDT-- 190 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~-~~~~~~~~~~~l~~--~~~~i~GiVlN~~~~~~~-- 190 (233)
.+.+.++|+||.-. . .. .........+ .+++|.+.... ++..+...++.+.. .+.++ -+|+||++ -..
T Consensus 53 ~~~~~l~Dt~G~~~--~-~~-~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~D-l~~~~ 125 (168)
T 1z2a_A 53 DVRLMLWDTAGQEE--F-DA-ITKAYYRGAQ-ACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKID-LLDDS 125 (168)
T ss_dssp EEEEEEECCTTGGG--T-TC-CCHHHHTTCC-EEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECGG-GGGGC
T ss_pred EEEEEEEcCCCcHh--H-HH-HHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcc-cCccc
Confidence 46789999987431 1 11 1222233332 46666666532 34433333333332 46674 48899998 211
Q ss_pred hhhhhhHHHHHhhcCCCce
Q psy14904 191 LFANENYIELTKYLNVTPL 209 (233)
Q Consensus 191 ~~~~~~~~~l~~~~~~pvl 209 (233)
....+..+.+.+..+.+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 1112233444445677666
No 421
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.28 E-value=0.42 Score=40.37 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=26.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..+|..+ |..+..++
T Consensus 148 ~~~vLL~Gp-pGtGKT~la~aia~~~---~~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGP-PGNGKTMLAKAVAAES---NATFFNIS 180 (389)
T ss_dssp CSEEEEESS-TTSCHHHHHHHHHHHT---TCEEEEEC
T ss_pred CceEEEECC-CCCCHHHHHHHHHHhh---cCcEEEee
Confidence 467899998 9999999999887653 66776665
No 422
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=87.26 E-value=0.29 Score=38.89 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.0
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.-+.|++.|||..+|.|+ .+|..|+++|++|.+++
T Consensus 24 ~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~ 58 (260)
T 3gem_A 24 TLSSAPILITGASQRVGL-----HCALRLLEHGHRVIISY 58 (260)
T ss_dssp ---CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 334578999999888887 67888999999999986
No 423
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=87.22 E-value=0.39 Score=38.11 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+.-+.|++.|||..+|.|+ .+|..|+++|++|.+++
T Consensus 5 m~~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~ 41 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGR-----GIATVFARAGANVAVAG 41 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred ccCCCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 45555689999999888887 57788899999999876
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.20 E-value=0.52 Score=35.81 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=18.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~ 29 (233)
...|+|.|. +|+||||+...|..
T Consensus 12 ~~~i~~~G~-~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 12 QPSIIIAGP-QNSGKTSLLTLLTT 34 (218)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHhc
Confidence 456888998 99999999876653
No 425
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.14 E-value=0.56 Score=34.63 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCAL 27 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~L 27 (233)
...|+|.|. +|+||||+...|
T Consensus 23 ~~~i~v~G~-~~~GKSsli~~l 43 (195)
T 3pqc_A 23 KGEVAFVGR-SNVGKSSLLNAL 43 (195)
T ss_dssp TCEEEEEEB-TTSSHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHH
Confidence 346888888 999999998766
No 426
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=87.13 E-value=0.44 Score=37.81 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=28.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-|++.|||..+|.|+ .+|..|++.|.+|.+.+
T Consensus 2 nK~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~ 33 (247)
T 3ged_A 2 NRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFID 33 (247)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 478999999999998 57889999999999987
No 427
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.11 E-value=0.52 Score=34.74 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=17.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La 28 (233)
..|++.|. +|+||||+...|+
T Consensus 8 ~~i~lvG~-~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGN-PNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECS-TTSSHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHh
Confidence 46888888 8999999987775
No 428
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.10 E-value=0.48 Score=35.08 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
..+|+|. .|+||||+.-.|...|.
T Consensus 28 ~~~i~G~-NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGA-NGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHHHTT
T ss_pred cEEEECC-CCCCHHHHHHHHHHHHc
Confidence 5678887 99999999999988875
No 429
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=87.07 E-value=0.32 Score=40.47 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=28.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe-ee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK-PI 44 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d-p~ 44 (233)
.+.|+|-|. =|+||||++..|+..|...+ +|.+.. |.
T Consensus 7 ~~fI~~EG~-dGaGKTT~~~~La~~L~~~~-~v~~trEPg 44 (334)
T 1p6x_A 7 IVRIYLDGV-YGIGKSTTGRVMASAASGGS-PTLYFPEPM 44 (334)
T ss_dssp EEEEEEECS-TTSSHHHHHHHHHSGGGCSS-CEEEECCCH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhccCC-cEEEEeCCC
Confidence 357888888 89999999999999997644 466554 43
No 430
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=87.02 E-value=0.45 Score=37.40 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=29.0
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.-+.|++.|||..+|.|+ .+|..|+++|.+|.+.+
T Consensus 6 ~l~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~ 40 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGK-----AIAELLAERGAKVIGTA 40 (248)
T ss_dssp CCTTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 334589999999888886 67888999999998876
No 431
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=86.98 E-value=0.5 Score=37.67 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=19.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~ 29 (233)
...|++.|. +|+||||+...|..
T Consensus 3 ~~~i~lvG~-~g~GKTTL~n~l~g 25 (271)
T 3k53_A 3 LKTVALVGN-PNVGKTTIFNALTG 25 (271)
T ss_dssp CEEEEEEEC-SSSSHHHHHHHHHT
T ss_pred eeEEEEECC-CCCCHHHHHHHHhC
Confidence 356889998 99999999987753
No 432
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.96 E-value=0.16 Score=36.44 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
..+.+.|. +|+|||+++..++...
T Consensus 28 ~~vll~G~-~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGE-AGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEE-TTCCHHHHHGGGCCTT
T ss_pred CcEEEECC-CCccHHHHHHHHHHhC
Confidence 35788888 9999999887776543
No 433
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.89 E-value=0.7 Score=40.52 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.+.+.|. +|+|||+++..++..+ +..+..++
T Consensus 238 ~~~vLL~Gp-pGtGKT~lAraia~~~---~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGP-PGTGKTLIARAVANET---GAFFFLIN 270 (489)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHHHC---SSEEEEEE
T ss_pred CCcEEEECc-CCCCHHHHHHHHHHHh---CCCEEEEE
Confidence 356889988 9999999998887665 66666665
No 434
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.82 E-value=0.52 Score=34.22 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=17.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La 28 (233)
..|++.|. +|+||||+...|.
T Consensus 4 ~~v~lvG~-~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGN-PNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECS-TTSSHHHHHHHHH
T ss_pred cEEEEECC-CCCCHHHHHHHHh
Confidence 35888888 8999999987775
No 435
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=86.81 E-value=0.74 Score=37.88 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=23.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
-+-+.|+|. +|+||||+|..| .++|++...
T Consensus 147 g~gvli~G~-sG~GKStlal~l----~~~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGR-SGIGKSECALDL----INKNHLFVG 176 (312)
T ss_dssp TEEEEEEES-SSSSHHHHHHHH----HTTTCEEEE
T ss_pred CEEEEEEcC-CCCCHHHHHHHH----HHcCCEEEe
Confidence 346888888 999999999765 458987654
No 436
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.75 E-value=0.51 Score=37.20 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.9
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+++|.|. .|+||||+...|+..+.
T Consensus 25 e~~~liG~-nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGP-TGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECC-TTSSHHHHHHHHHTSSC
T ss_pred EEEEEECC-CCCCHHHHHHHHhCCCC
Confidence 67899999 99999999988887764
No 437
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=86.65 E-value=0.83 Score=36.12 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=31.2
Q ss_pred CCCCCceeEEEEeCCC--CCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNT--NIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kg--gvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|++-+-|++.|||..+ |.|+ .+|..|+++|.+|.+.+
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~-----aiA~~la~~Ga~Vvi~~ 39 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAF-----GVAKVLDQLGAKLVFTY 39 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CcCCCCCEEEEECCCCCchHHH-----HHHHHHHHCCCEEEEEE
Confidence 7788889999999654 6775 67889999999999976
No 438
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.63 E-value=0.62 Score=34.54 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=17.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La 28 (233)
..|+|.|. +|+||||+...|.
T Consensus 49 ~~i~vvG~-~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGP-QNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECC-TTSSHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHh
Confidence 36888888 8999999987664
No 439
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=86.62 E-value=0.47 Score=37.20 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=27.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||++.|||..+|.|+ .++..|+++|++|.+.+
T Consensus 1 mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~ 32 (257)
T 1fjh_A 1 MSIIVISGCATGIGA-----ATRKVLEAAGHQIVGID 32 (257)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 578999999898887 56778889999999876
No 440
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=86.57 E-value=0.58 Score=37.41 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=28.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 21 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~ 53 (277)
T 2rhc_B 21 DSEVALVTGATSGIGL-----EIARRLGKEGLRVFVCA 53 (277)
T ss_dssp TSCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 3479999999999887 57788899999999876
No 441
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.50 E-value=0.4 Score=46.26 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
...+++.|+|. ||+||||+|..++....
T Consensus 145 ~~~~~v~i~G~-gG~GKTtLa~~~~~~~~ 172 (1249)
T 3sfz_A 145 GEPGWVTIYGM-AGCGKSVLAAEAVRDHS 172 (1249)
T ss_dssp TSCEEEEEECS-TTSSHHHHHHHHTCCHH
T ss_pred CCCCEEEEEeC-CCCCHHHHHHHHhcChh
Confidence 34678999999 99999999988887653
No 442
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=86.44 E-value=0.53 Score=40.42 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=27.2
Q ss_pred eeEEEEeCCCCCcHHHHH-HHHHHHHHHcCCeeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIIS-CALLSEFKKRGISCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a-~~La~~l~~~G~~Vl~~dp~ 44 (233)
+.+.+.+. .|+|||.++ ..+...+...|.+++++=|.
T Consensus 3 ~~~lv~a~-TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt 40 (431)
T 2v6i_A 3 ELTVLDLH-PGAGKTRRVLPQLVREAVKKRLRTVILAPT 40 (431)
T ss_dssp CEEEEECC-TTSCTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHHHHhCCCCEEEECcH
Confidence 44556665 899999987 44555666789999998653
No 443
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=86.42 E-value=0.45 Score=38.60 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=29.7
Q ss_pred CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.-+.|++.|||..+|.|+ .++..|+++|.+|.+++
T Consensus 37 ~~l~~k~vlVTGas~GIG~-----aia~~la~~G~~V~~~~ 72 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGR-----GIATVFARAGANVAVAA 72 (293)
T ss_dssp TCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred cCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEE
Confidence 3334679999999888887 67788999999999986
No 444
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.41 E-value=0.78 Score=42.29 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR 34 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~ 34 (233)
.+.+.++|. +|+|||+++..|+..+...
T Consensus 207 ~~~vlL~G~-~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 207 KNNPLLVGE-SGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SCEEEEECC-TTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEcC-CCCCHHHHHHHHHHHHHhC
Confidence 456788888 9999999999999999764
No 445
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=86.33 E-value=0.52 Score=35.62 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=25.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMKP 43 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~dp 43 (233)
.+.+.+. +|+|||+++..++..+..+ +.+++++=|
T Consensus 50 ~~li~~~-tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p 90 (216)
T 3b6e_A 50 NIIICLP-TGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVN 90 (216)
T ss_dssp CEEEECS-CHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEES
T ss_pred CEEEEcC-CCCCHHHHHHHHHHHHHhhcccccCCCcEEEEEC
Confidence 4555555 8999999998888765443 568887753
No 446
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.31 E-value=0.58 Score=33.45 Aligned_cols=20 Identities=15% Similarity=0.524 Sum_probs=16.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La 28 (233)
.|+|.|. +|+||||+...|.
T Consensus 6 ~i~v~G~-~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGS-GGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECS-TTSSHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHH
Confidence 5788888 8999999977665
No 447
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=86.26 E-value=0.63 Score=37.32 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=27.9
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|++.|||..+|.|+ .+|..|+++|.+|.+++
T Consensus 28 ~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~ 60 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGL-----GIARALAASGFDIAITG 60 (280)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEecCCCHHHH-----HHHHHHHHCCCeEEEEe
Confidence 3478999999888887 57788889999999876
No 448
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.26 E-value=0.75 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=17.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La 28 (233)
.-.|+|.|. +|+||||+...|.
T Consensus 9 ~~ki~i~G~-~~~GKTsli~~l~ 30 (212)
T 2j0v_A 9 FIKCVTVGD-GAVGKTCMLICYT 30 (212)
T ss_dssp EEEEEEEES-TTSSHHHHHHHHH
T ss_pred eEEEEEECC-CCCCHHHHHHHHh
Confidence 345888888 8999999986654
No 449
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=86.23 E-value=0.6 Score=36.87 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=28.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|++.|||..+|.|+ .+|..|+++|.+|.+.+
T Consensus 7 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~ 39 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGL-----ATVRRLVEGGAEVLLTG 39 (255)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 4579999999899887 68889999999999876
No 450
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=86.22 E-value=0.44 Score=36.80 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=27.8
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 3 ~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~ 36 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMA 36 (234)
T ss_dssp -CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEE
Confidence 44578999999888886 67788889999998876
No 451
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=86.22 E-value=0.52 Score=37.55 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=30.1
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+.-+.|++.|||..+|.|+ .+|..|+++|.+|.+.+
T Consensus 22 m~~l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~ 58 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGE-----AIARCFHAQGAIVGLHG 58 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred hhccCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 34445689999999888886 67888999999998876
No 452
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=86.20 E-value=0.53 Score=36.92 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=27.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.|++.|||..+|.|+ .++..|+++|.+|.+++
T Consensus 2 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~ 33 (247)
T 3dii_A 2 NRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFID 33 (247)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 578999999898886 57888999999999876
No 453
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=86.05 E-value=0.51 Score=37.13 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=27.3
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 1 Mk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~ 32 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGM-----GSALRLSEAGHTVACHD 32 (254)
T ss_dssp -CEEEESSTTSTTHH-----HHHHHHHHTTCEEEECC
T ss_pred CeEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEe
Confidence 578999999999998 57788899999998865
No 454
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.02 E-value=0.49 Score=37.13 Aligned_cols=26 Identities=19% Similarity=0.016 Sum_probs=21.6
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
-.+++|.|. .|+||||+...|+..+.
T Consensus 31 Ge~~~iiG~-nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGP-SGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECS-TTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECC-CCCcHHHHHHHHhcCCC
Confidence 457899999 99999999888876654
No 455
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.98 E-value=0.54 Score=34.62 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La 28 (233)
.|+|.|. +|+||||+...|.
T Consensus 3 ki~v~G~-~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGR-SNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEB-TTSSHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHh
Confidence 4778887 8999999987765
No 456
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.93 E-value=0.74 Score=37.01 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=23.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRG 35 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G 35 (233)
.+.|.+.|+ +|+|||+++..||..+...|
T Consensus 104 ~n~~~l~Gp-pgtGKt~~a~ala~~~~l~G 132 (267)
T 1u0j_A 104 RNTIWLFGP-ATTGKTNIAEAIAHTVPFYG 132 (267)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHHHSSCEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHhhhcccc
Confidence 357999998 99999999999988653333
No 457
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=85.77 E-value=0.59 Score=37.33 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=28.1
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|++.|||..+|.|+ .+|..|+++|.+|.+++
T Consensus 29 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~Vi~~~ 61 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGE-----ATVRRLHADGLGVVIAD 61 (281)
T ss_dssp TTEEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEe
Confidence 4578999999888886 57788889999999876
No 458
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.75 E-value=1 Score=39.69 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=26.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHH-HHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALL-SEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La-~~l~~~G~~Vl~~d 42 (233)
-.+++|.|. .|+||||++..++ ..+.+.+....+++
T Consensus 39 Ge~~~l~G~-nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 39 GRSTLVSGT-SGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 457899999 9999999999953 33444355566665
No 459
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.74 E-value=0.66 Score=34.67 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~ 29 (233)
.++|.|. .|+||||+...|+.
T Consensus 31 kv~lvG~-~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGD-SGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHhc
Confidence 5788888 89999999876653
No 460
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=85.67 E-value=0.54 Score=36.55 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=26.1
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
||++.|||..||.|+ +++..|+++|++|.+++
T Consensus 1 Mk~vlVtGasg~iG~-----~l~~~L~~~g~~V~~~~ 32 (255)
T 2dkn_A 1 MSVIAITGSASGIGA-----ALKELLARAGHTVIGID 32 (255)
T ss_dssp -CEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CcEEEEeCCCcHHHH-----HHHHHHHhCCCEEEEEe
Confidence 568999999888887 55677888999999886
No 461
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=85.66 E-value=0.67 Score=33.07 Aligned_cols=20 Identities=15% Similarity=0.506 Sum_probs=16.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La 28 (233)
.|+|.|. +|+||||+...|.
T Consensus 5 ~i~v~G~-~~~GKSsli~~l~ 24 (167)
T 1kao_A 5 KVVVLGS-GGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECC-TTSSHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHH
Confidence 4788887 8999999976665
No 462
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.64 E-value=0.69 Score=37.13 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKK 33 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~ 33 (233)
+++|.|. .|+||||+.-.|+....-
T Consensus 4 ~v~lvG~-nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQ-SGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEES-SSSSHHHHHHHHHHHHC-
T ss_pred EEEEECC-CCCCHHHHHHHHhCCCCC
Confidence 5889998 899999999888887743
No 463
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=85.63 E-value=0.5 Score=36.75 Aligned_cols=26 Identities=19% Similarity=-0.015 Sum_probs=21.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
-.+++|.|. .|+||||+...|+..+.
T Consensus 30 Ge~~~iiG~-nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGA-SGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEEC-TTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECC-CCCCHHHHHHHHhcCCC
Confidence 357899999 99999999988876654
No 464
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.59 E-value=0.53 Score=36.98 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
-.+++|.|. .|+||||+...|+..+.
T Consensus 31 Ge~~~i~G~-nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQ-VGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECS-TTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECC-CCCCHHHHHHHHhcCCC
Confidence 457899999 89999999988887764
No 465
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=85.55 E-value=0.75 Score=35.67 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.-+.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 3 ~~l~~k~vlITGasggiG~-----~~a~~l~~~G~~V~~~~ 38 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGR-----GTVQALHATGARVVAVS 38 (244)
T ss_dssp CCCTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred cccCCcEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 3334578999999888887 56778889999998875
No 466
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.55 E-value=0.82 Score=40.83 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=31.9
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCeeeEEeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR----GISCIGMKPIA 45 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~----G~~Vl~~dp~~ 45 (233)
+.-+.|+|. +|+|||+....|...|+.+ ..++.++||-.
T Consensus 214 ~pHlLIaG~-TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGT-TGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECC-TTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECC-CCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 567899998 9999999999999988865 34788888653
No 467
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.54 E-value=0.63 Score=33.45 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=16.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La 28 (233)
.|+|.|. +|+||||+...|.
T Consensus 5 ~i~v~G~-~~~GKssli~~l~ 24 (172)
T 2erx_A 5 RVAVFGA-GGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECC-TTSSHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHH
Confidence 4788887 9999999987765
No 468
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.53 E-value=0.63 Score=37.99 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=23.7
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.+.|+|. .|+||||+...++..+ + +.+++
T Consensus 32 ~~v~i~G~-~G~GKT~Ll~~~~~~~---~--~~~~~ 61 (350)
T 2qen_A 32 PLTLLLGI-RRVGKSSLLRAFLNER---P--GILID 61 (350)
T ss_dssp SEEEEECC-TTSSHHHHHHHHHHHS---S--EEEEE
T ss_pred CeEEEECC-CcCCHHHHHHHHHHHc---C--cEEEE
Confidence 56888888 9999999998887654 3 66666
No 469
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=85.52 E-value=0.56 Score=37.10 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=27.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 28 ~~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~ 60 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGA-----AIARKLGSLGARVVLTA 60 (262)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEE
Confidence 4578999999888886 56788899999998876
No 470
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=85.51 E-value=1 Score=35.96 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=23.5
Q ss_pred eCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904 13 GTNTNIGKTIISCALLSEFKKRGI-SCIGMK 42 (233)
Q Consensus 13 ~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d 42 (233)
....|+|||.++..++..+..+|. +++++=
T Consensus 134 ~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~ 164 (282)
T 1rif_A 134 NLPTSAGRSLIQALLARYYLENYEGKILIIV 164 (282)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred EcCCCCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 344899999999888887766655 888874
No 471
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=85.48 E-value=0.64 Score=35.95 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=27.8
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
++|++.|||..+|.|+ .++..|+++|++|.+.+
T Consensus 1 ~~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~ 33 (235)
T 3l77_A 1 EMKVAVITGASRGIGE-----AIARALARDGYALALGA 33 (235)
T ss_dssp CCCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 3688999999888876 67888889999998876
No 472
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.43 E-value=0.84 Score=35.69 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP 43 (233)
Q Consensus 9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp 43 (233)
+.+++. .|+|||.++..++..+ +.+++++=|
T Consensus 111 ~ll~~~-tG~GKT~~a~~~~~~~---~~~~liv~P 141 (237)
T 2fz4_A 111 GCIVLP-TGSGKTHVAMAAINEL---STPTLIVVP 141 (237)
T ss_dssp EEEEES-SSTTHHHHHHHHHHHS---CSCEEEEES
T ss_pred EEEEeC-CCCCHHHHHHHHHHHc---CCCEEEEeC
Confidence 555555 7999999998776554 778888753
No 473
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=85.43 E-value=0.75 Score=36.96 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=28.0
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 15 ~gk~vlVTGas~gIG~-----~~a~~L~~~G~~V~~~~ 47 (291)
T 3rd5_A 15 AQRTVVITGANSGLGA-----VTARELARRGATVIMAV 47 (291)
T ss_dssp TTCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEE
Confidence 4579999999888886 67788899999999876
No 474
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=85.37 E-value=0.46 Score=37.93 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=28.4
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
.+.|++.|||..+|.|+ +++..|+++|++|.+.+
T Consensus 3 ~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~ 36 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGR-----AIAEAAVAAGDTVIGTA 36 (281)
T ss_dssp -CCCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEECCCChHHH-----HHHHHHHHCCCEEEEEe
Confidence 34689999999898887 67788899999998876
No 475
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=85.34 E-value=0.5 Score=38.33 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|+.-+.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 21 m~~l~~k~vlVTGas~gIG~-----aia~~L~~~G~~V~~~~ 57 (297)
T 1xhl_A 21 MARFSGKSVIITGSSNGIGR-----SAAVIFAKEGAQVTITG 57 (297)
T ss_dssp --CCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred ccCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 34334578999999888887 57788899999999876
No 476
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.32 E-value=0.59 Score=36.83 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=25.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG 40 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~ 40 (233)
-.+++|.|. .|+||||+...|+..+.-..-+|.+
T Consensus 28 Ge~~~i~G~-nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 28 NSIIAFAGP-SGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp TEEEEEECC-TTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 457899999 8999999999888876533224544
No 477
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=85.32 E-value=0.72 Score=36.86 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.6
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+.|++.|||..+|.|+ .+|..|+++|.+|.+++
T Consensus 14 ~gk~~lVTGas~gIG~-----a~a~~la~~G~~V~~~~ 46 (280)
T 3pgx_A 14 QGRVAFITGAARGQGR-----SHAVRLAAEGADIIACD 46 (280)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 4579999999888886 67888999999999986
No 478
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=85.31 E-value=0.47 Score=45.66 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=26.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHH--HHH-cCCeeeEEe
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSE--FKK-RGISCIGMK 42 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~--l~~-~G~~Vl~~d 42 (233)
.+++.|.|. ||+||||++..++.. .+. ....+..++
T Consensus 150 ~RVV~IvGm-GGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs 188 (1221)
T 1vt4_I 150 AKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188 (1221)
T ss_dssp SCEEEECCS-TTSSHHHHHHHHHHHCHHHHHHSSCEEEEE
T ss_pred CeEEEEEcC-CCccHHHHHHHHHHhhHHHHhCCCcEEEEE
Confidence 578999999 999999999988853 332 244566665
No 479
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=85.31 E-value=0.38 Score=41.62 Aligned_cols=30 Identities=23% Similarity=0.198 Sum_probs=26.2
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCe
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGIS 37 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~ 37 (233)
+.++|.|||+ -|||||+.-|+..|.+.|+.
T Consensus 99 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~ 128 (454)
T 2am1_A 99 TVDVFAVTGS---NGKTTTKDMLAHLLSTRYKT 128 (454)
T ss_dssp CCEEEEEECC---CSSSCHHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCC---CCcHHHHHHHHHHHHhcCCE
Confidence 4679999988 68999999999999999953
No 480
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.31 E-value=0.75 Score=33.33 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=17.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLS 29 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~ 29 (233)
..|+|.|. +|+||||+...|..
T Consensus 16 ~~i~v~G~-~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 16 FKYIIIGD-MGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHc
Confidence 46888887 99999999877653
No 481
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.30 E-value=0.27 Score=40.50 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
.+.+.|. +|+|||+++..++..+.
T Consensus 47 ~vLl~G~-~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGD-RGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECC-GGGCTTHHHHHHHHHSC
T ss_pred eEEEECC-CCccHHHHHHHHHHhCc
Confidence 4888888 99999999999998774
No 482
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=85.28 E-value=2.8 Score=35.94 Aligned_cols=87 Identities=15% Similarity=-0.057 Sum_probs=45.7
Q ss_pred CeEEEeccCcccCccCCCCch---HHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904 118 DVIILEGIGGFSVPFHDNENS---ADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN 194 (233)
Q Consensus 118 D~vlID~~~g~~~p~~~~~~~---~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~ 194 (233)
.+.|+||||.....-...... ...... ..-+++|.+.+ ........++.+++.+.+++ +|+||++ .......
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~-aD~vllVvD~~--~~~~~~~~l~~l~~~~~piI-vV~NK~D-l~~~~~~ 158 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYR-ADCGILVTDSA--PTPYEDDVVNLFKEMEIPFV-VVVNKID-VLGEKAE 158 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTS-CSEEEEECSSS--CCHHHHHHHHHHHHTTCCEE-EECCCCT-TTTCCCT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhc-CCEEEEEEeCC--ChHHHHHHHHHHHhcCCCEE-EEEeCcC-CCCccHH
Confidence 689999987542111111111 111222 23467777763 22334556666777788855 8899998 3222222
Q ss_pred hhHHHHHhhcCCCce
Q psy14904 195 ENYIELTKYLNVTPL 209 (233)
Q Consensus 195 ~~~~~l~~~~~~pvl 209 (233)
+..+.+++.++.+++
T Consensus 159 ~~~~~l~~~~g~~v~ 173 (423)
T 3qq5_A 159 ELKGLYESRYEAKVL 173 (423)
T ss_dssp HHHHHSSCCTTCCCC
T ss_pred HHHHHHHHHcCCCEE
Confidence 344455555566655
No 483
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=85.28 E-value=3.5 Score=34.83 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=37.9
Q ss_pred CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc-HHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904 116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC-INNALLSLEAINSRGLKLIGWVANHTQ 186 (233)
Q Consensus 116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~-~~~~~~~~~~l~~~~~~i~GiVlN~~~ 186 (233)
.+.+.++|+||.-. +. ......+... .-+++|.++..+. ..++...+..++..+.+-+-+|+||++
T Consensus 74 ~~~~~iiDtPGh~~--~~--~~~~~~~~~~-D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 74 LRRISFIDAPGHEV--LM--ATMLSGAALM-DGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEEECCCCGG--GH--HHHHHHHTTC-SEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGG
T ss_pred cceEEEEECCCcHH--HH--HHHHHHHhhC-CEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcc
Confidence 36799999987521 10 0111122222 3467777776553 555555666666555543558899998
No 484
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=85.21 E-value=0.39 Score=38.29 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=28.7
Q ss_pred CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
-+.|++.|||..+|.|+ .+|..|+++|.+|.+.+
T Consensus 26 l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~ 59 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGG-----AVVTALRAAGARVAVAD 59 (266)
T ss_dssp CTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEECS
T ss_pred CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence 34579999999888887 67888999999999876
No 485
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.20 E-value=0.52 Score=36.27 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHHHH-cC
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEFKK-RG 35 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l~~-~G 35 (233)
.+++|.|. .|+||||+...|+.. .- .|
T Consensus 23 e~~~liG~-nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 23 TIVFGLGP-AGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp SEEEEECC-TTSSTTHHHHHHHHH-HHHTT
T ss_pred CEEEEECC-CCCCHHHHHHHHhcC-CCcCC
Confidence 47889998 899999999988887 53 45
No 486
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.19 E-value=0.87 Score=40.15 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=30.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCeeeEEeeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKR----GISCIGMKPIA 45 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~----G~~Vl~~dp~~ 45 (233)
+..+.|+|. +|+||||+...|...|..+ ..++.++||-.
T Consensus 167 ~pHlLIaG~-TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGT-TGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECC-TTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 567899998 9999999999988877654 34677788653
No 487
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.14 E-value=0.75 Score=34.42 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=17.4
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La 28 (233)
.-.|+|.|. +|+||||+...|.
T Consensus 8 ~~ki~v~G~-~~~GKSsli~~l~ 29 (203)
T 1zbd_A 8 MFKILIIGN-SSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEEECS-TTSSHHHHHHHHH
T ss_pred eeEEEEECC-CCCCHHHHHHHHh
Confidence 345888888 8999999887664
No 488
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=85.12 E-value=0.64 Score=36.32 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=29.9
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|..-+.|++.|||..+|.|+ .++..|+++|++|.+.+
T Consensus 1 m~~l~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~ 37 (246)
T 2ag5_A 1 MGRLDGKVIILTAAAQGIGQ-----AAALAFAREGAKVIATD 37 (246)
T ss_dssp CCTTTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEE
Confidence 44445679999999888886 57788889999999876
No 489
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=85.10 E-value=1 Score=41.10 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=26.5
Q ss_pred eeEEEEeCCCCCcHHHHHHHH-HHHHHHcCCeeeEEeee
Q psy14904 7 LHYFITGTNTNIGKTIISCAL-LSEFKKRGISCIGMKPI 44 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~L-a~~l~~~G~~Vl~~dp~ 44 (233)
+.+.|++. +|+|||+.+.-. ...+.++|.+++++-|.
T Consensus 47 ~~~lv~ap-TGsGKT~~~~l~il~~~~~~~~~il~i~P~ 84 (715)
T 2va8_A 47 NRLLLTSP-TGSGKTLIAEMGIISFLLKNGGKAIYVTPL 84 (715)
T ss_dssp CCEEEECC-TTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred CcEEEEcC-CCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 45666666 899999998444 34556678899998653
No 490
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=85.09 E-value=0.73 Score=36.13 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
+-+.|++.|||..+|.|+ .++..|+++|.+|.+.+
T Consensus 3 ~l~gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~ 37 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGK-----AIAARLAADGATVIVSD 37 (247)
T ss_dssp TTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEC
T ss_pred CcCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence 345689999999898887 67889999999999875
No 491
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=85.08 E-value=0.49 Score=37.35 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
..++|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 4 ~~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~v~~~~ 38 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGK-----QVTEKLLAKGYSVTVTY 38 (264)
T ss_dssp --CCCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred ccccCEEEEeCCCchhHH-----HHHHHHHHCCCEEEEEc
Confidence 446789999999888886 67888899999999874
No 492
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.05 E-value=0.65 Score=39.03 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=19.4
Q ss_pred CceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 5 NFLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 5 ~~~~i~i~~~kggvGKTt~a~~La 28 (233)
++..|.+.|+ ||+||||++..+-
T Consensus 32 ~~~killlG~-~~SGKST~~kq~~ 54 (362)
T 1zcb_A 32 RLVKILLLGA-GESGKSTFLKQMR 54 (362)
T ss_dssp CCEEEEEECS-TTSSHHHHHHHHH
T ss_pred CccEEEEECC-CCCcHHHHHHHHH
Confidence 3556889998 9999999998883
No 493
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=84.99 E-value=0.77 Score=35.31 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=17.8
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La 28 (233)
...|+|.|. +|+||||+...|.
T Consensus 29 ~~kI~vvG~-~~vGKSsLin~l~ 50 (228)
T 2qu8_A 29 KKTIILSGA-PNVGKSSFMNIVS 50 (228)
T ss_dssp SEEEEEECS-TTSSHHHHHHHHT
T ss_pred CCEEEEECC-CCCCHHHHHHHHh
Confidence 456888888 8999999887654
No 494
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.97 E-value=0.75 Score=34.28 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q psy14904 8 HYFITGTNTNIGKTIISCALL 28 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La 28 (233)
.|++.|. +|+||||+...|.
T Consensus 25 ki~~vG~-~~vGKSsli~~l~ 44 (190)
T 1m2o_B 25 KLLFLGL-DNAGKTTLLHMLK 44 (190)
T ss_dssp EEEEEES-TTSSHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHh
Confidence 5788888 8999999987665
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=84.96 E-value=0.79 Score=40.03 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904 7 LHYFITGTNTNIGKTIISCALLSEF 31 (233)
Q Consensus 7 ~~i~i~~~kggvGKTt~a~~La~~l 31 (233)
+.+.+.|. +|+|||+++..++..+
T Consensus 50 ~gvLL~Gp-pGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGP-PGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHc
Confidence 56889998 9999999999998755
No 496
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.96 E-value=0.64 Score=36.80 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.5
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSE 30 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~ 30 (233)
-.+++|.|. .|+||||+...|+..
T Consensus 29 Ge~~~l~G~-nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGP-NGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECS-TTSSHHHHHHHHHTC
T ss_pred CCEEEEECC-CCCCHHHHHHHHhCC
Confidence 457899999 899999999888765
No 497
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=84.88 E-value=0.6 Score=37.28 Aligned_cols=26 Identities=19% Similarity=-0.019 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFK 32 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~ 32 (233)
-.+++|.|. .|+||||+...|+..+.
T Consensus 32 Ge~~~liG~-nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGS-SGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECC-TTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECC-CCCCHHHHHHHHhcCCC
Confidence 457899999 99999999988887664
No 498
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.86 E-value=0.73 Score=37.94 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904 6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI 39 (233)
Q Consensus 6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl 39 (233)
-+.++++|. +|+||||++..|.. +|++..
T Consensus 144 g~~vl~~G~-sG~GKSt~a~~l~~----~g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGD-SGIGKSETALELIK----RGHRLV 172 (314)
T ss_dssp TEEEEEEES-TTSSHHHHHHHHHH----TTCEEE
T ss_pred CEEEEEEeC-CCCCHHHHHHHHHh----cCCcee
Confidence 457889998 99999999887754 577644
No 499
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=84.83 E-value=1.3 Score=39.38 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=27.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHc---------CCeeeEEee
Q psy14904 8 HYFITGTNTNIGKTIISCALLSEFKKR---------GISCIGMKP 43 (233)
Q Consensus 8 ~i~i~~~kggvGKTt~a~~La~~l~~~---------G~~Vl~~dp 43 (233)
.+.++.. .|+|||.++..++..+.+. +.+|+++=|
T Consensus 200 ~~ll~~~-TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P 243 (590)
T 3h1t_A 200 RSLITMA-TGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLAD 243 (590)
T ss_dssp EEEEEEC-TTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC
T ss_pred ceEEEec-CCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeC
Confidence 3555555 7999999999999988774 478888765
No 500
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=84.82 E-value=0.57 Score=37.30 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=29.3
Q ss_pred CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904 1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42 (233)
Q Consensus 1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d 42 (233)
|..-+.|++.|||..+|.|+ .++..|+++|++|.+++
T Consensus 1 m~~~~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~ 37 (278)
T 1spx_A 1 MTRFAEKVAIITGSSNGIGR-----ATAVLFAREGAKVTITG 37 (278)
T ss_dssp -CTTTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEe
Confidence 44444578999999899887 56788889999998876
Done!