RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14904
(233 letters)
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 215 bits (549), Expect = 6e-71
Identities = 82/226 (36%), Positives = 113/226 (50%), Gaps = 5/226 (2%)
Query: 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
YF+TGT+T +GKT+ SCALL K G G KP+ASG+ + N D L +
Sbjct: 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGS--EKTPEGLRNSDALALQR 60
Query: 68 YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
S SL +NPY F P SP+ S E R I + + L D +++EG GG
Sbjct: 61 NS-SLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 119
Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
+ P D AD + LP+ILV+ +K+GCIN+A+L+ + I GL L GWVAN
Sbjct: 120 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 179
Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN-LISHYLDFSSL 232
A E LT+ + LG IP+L N Y++ + L
Sbjct: 180 PGKRHA-EYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL 224
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural
genomics of infec diseases, csgid, ligase; 1.52A
{Francisella tularensis subsp}
Length = 228
Score = 206 bits (525), Expect = 3e-67
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 12/226 (5%)
Query: 8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
+FI GT+T +GKT IS L+ + + I + +KP+ASG EDV +
Sbjct: 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQ----SQFSELCEDVESILN 61
Query: 68 YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIIN-CYNYLSNLTDVIILEGIG 126
IN F ++P+ + I+ ++ + + D++ +EG G
Sbjct: 62 AY-KHKFTAAEINLISFNQAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAG 120
Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
G P+ D+ DL + L +P++LV +K+GCIN+ LL++ +N +KL GW+AN
Sbjct: 121 GLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCND 180
Query: 187 IVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
+ + +E + + +I + ++D S +
Sbjct: 181 -SNIKYIDEQINTIEELSGYKCSAKISRNADY-----LDFIDLSKI 220
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 191 bits (488), Expect = 2e-61
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 15/208 (7%)
Query: 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
+TGT T +GKT++ AL S ++ GI KP+ +G ++D+ + +
Sbjct: 29 LVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARG-------DDDLAEVGRL 81
Query: 69 SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIIN-CYNYLSNLTDVIILEGIGG 127
+ T+L + P++P ++ + I L + ++EG GG
Sbjct: 82 AGV----TQLAGLARYPQPMAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGG 137
Query: 128 FSVPFHDNENS-ADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
V + + D+A + ++V+ +G +N+ L+LEA+ ++ + G V
Sbjct: 138 LLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197
Query: 187 IVDTLFANENYIELTKYLNVTPLGRIPY 214
L A N L + V +P
Sbjct: 198 DPPGLVAASNRSALARIAMV--RAALPA 223
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 186 bits (475), Expect = 2e-59
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 10/220 (4%)
Query: 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
FI+ TNTN GKT + L G+ I +KPI +G + I + D +L +
Sbjct: 24 LFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGV----NDAINHSSDAHLFLQD 79
Query: 69 SNSLYE--FTKLINPYLFKYPISPYTSSNLE--NRIINTSHIINCYNYLSNLTDVIILEG 124
+ L K I+ Y + +P + E N I+T ++ + + D++I+EG
Sbjct: 80 NRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEG 139
Query: 125 IGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANH 184
GG VP EN D A KL ++L+ +G IN+ LL+ + S L +
Sbjct: 140 AGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLK 199
Query: 185 TQIVDTLFANENYIE-LTKYLNVTPLGRIPYLYNLNINLI 223
+ YIE N P+ + ++
Sbjct: 200 GNNTAFHSISLPYIELFNTRSNN-PIVIFQQSLKVLMSFA 238
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 88.1 bits (218), Expect = 3e-20
Identities = 51/286 (17%), Positives = 100/286 (34%), Gaps = 65/286 (22%)
Query: 4 KNFLHYFITGTNTNIGKTIISCAL-----LSEFKKRGISCIGMKPIASGAYLNNKNKIWF 58
N Y I NT++GKT++S + L + + +KPI +G ++ ++ F
Sbjct: 32 LNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSDSRFVF 91
Query: 59 NEDVNLLNKYSNSLYEFTKLINP------------------------------------- 81
++ +L + + +++
Sbjct: 92 SKLDSLSLRRQIPISISNSVLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELL 151
Query: 82 ----YLFKYPISPYTSSNLENRIINTSHII-----------NCYNYLSNLTDVIILEGIG 126
Y ++ ISP+ ++ EN + S ++ C + ++E G
Sbjct: 152 CKTLYAWEAAISPHLAAERENATVEDSVVLQMIEKCLKEEMECGVKSEKSDLLCLVETAG 211
Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
G + P DL LP ILV D ++G I+ + + E++ RG + V
Sbjct: 212 GVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG 271
Query: 187 IVDTLFANENYIELTKYL-NVTPLGRIPYLYNLNINLISHYLDFSS 231
+ N + LT YL N P+ +P + + + + S
Sbjct: 272 L-------VNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 45/255 (17%), Positives = 75/255 (29%), Gaps = 50/255 (19%)
Query: 3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCI-GMKPIASGAYLNNKNKIWFNED 61
K+ L F N + S K I I K SG W
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----LFWT--- 70
Query: 62 VNLLNKYSNSLYEFTK-LINP-YLF---------KYPISPYTSSNLE-NRIINTSHIINC 109
LL+K + +F + ++ Y F + P + +R+ N + +
Sbjct: 71 --LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 110 YN------------YLSNLTDV--IILEGIGGF--SVPFHDNENSADLAEKLGLPIILVI 153
YN L L ++++G+ G + D S + K+ I
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-- 186
Query: 154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP 213
L + N+ LE + ++ N T D + I + L P
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQI---DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 214 YLYNLNINLISHYLD 228
Y L L+ L
Sbjct: 243 YENCL---LV---LL 251
Score = 29.1 bits (64), Expect = 1.7
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 58/164 (35%)
Query: 64 LLNKYSNSL-YEFTKLINPYLFKY----------PISPYTSSN-----------LENRII 101
+++ Y+ ++ LI PYL +Y I LE +I
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 102 NTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCI 160
+ S N + N L + + DN+ + LV +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPY------ICDNDPKYER---------LVNAIL---- 549
Query: 161 NNALLSLEA--INSRGLKLIGWVANHTQIVDTLFANEN---YIE 199
+ L +E I S+ +T ++ E+ + E
Sbjct: 550 -DFLPKIEENLICSK----------YTDLLRIALMAEDEAIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.019
Identities = 31/170 (18%), Positives = 50/170 (29%), Gaps = 52/170 (30%)
Query: 35 GISCIGMKPIASG--AYLNNK--NKIWFNEDVNLLNKYSNSLYEFTKLINP----YLFKY 86
G GM G Y +K +W D + + Y S+ + NP F
Sbjct: 1625 GSQEQGM-----GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVNLTIHFGG 1678
Query: 87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHD-NENSADL---- 141
+ I NY + + I++G F + NE+S
Sbjct: 1679 EKG---------KRIRE-------NYSA-MIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 142 -AEKLGL-----PIILVIDLKIGCINNALLSLEAINSRGLKLIGW-VANH 184
L P + +++ A E + S+GL A H
Sbjct: 1722 EKGLLSATQFTQPALTLMEK-------AA--FEDLKSKGLIPADATFAGH 1762
Score = 33.5 bits (76), Expect = 0.055
Identities = 42/239 (17%), Positives = 70/239 (29%), Gaps = 78/239 (32%)
Query: 6 FLHYFITGTNTNIGKTIISC--ALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDV- 62
FL Y + + L+EF+ YL D+
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--------------CYLEGN-------DIH 102
Query: 63 ----NLLNKYSNSLYEFTKLINPY-----LFKYPISPYTSSNL-ENRIINTSHIINCYNY 112
LL + +L + +LI Y + K P ++S L + ++ +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG- 161
Query: 113 LSNLTDVIILEGIGGFSVPFHDNENSADLAE--KLGLPIILVIDLKIGCINNALLSL--- 167
G G F E L + + LV DL I L L
Sbjct: 162 -----------GQGNTDDYF--EE----LRDLYQTYHV--LVGDL-IKFSAETLSELIRT 201
Query: 168 ----EAINSRGLKLIGWVANHTQIVDT--------------LFANENYIELTKYLNVTP 208
E + ++GL ++ W+ N + D + +Y+ K L TP
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Score = 28.1 bits (62), Expect = 3.6
Identities = 34/233 (14%), Positives = 66/233 (28%), Gaps = 73/233 (31%)
Query: 4 KNFLHY-FITGTNTN--IGKTIISCALLSEFKKRG-------ISCIGMKPIASGAYLNNK 53
+ + F G T + ++L + + +S + Y+N
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 54 NKIWFNED---VNLLNKYSN--------SLYEFTKLINPYLFKYPISPYTSSN---LENR 99
N ++L+N N SLY N L K + R
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL----NLTLRKAKAPSGLDQSRIPFSER 412
Query: 100 IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDN--ENSADL-------------AEK 144
+ S+ +L + + PFH + ++DL A+
Sbjct: 413 KLKFSN-----RFL-----PV--------ASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 145 LGLPIILVI---DLKIGCINNALLSL-EAINSRGLKLIGWVANH----TQIVD 189
+ +P+ DL+ + + + I + W T I+D
Sbjct: 455 IQIPVYDTFDGSDLR-VLSGSISERIVDCIIR---LPVKWETTTQFKATHILD 503
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural
genomics, protein structure initiative; 2.49A
{Chromobacterium violaceum atcc 12472}
Length = 350
Score = 31.4 bits (72), Expect = 0.20
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 124 GIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI--GCINNALLSLEAINSRGLKLI 178
G PF +E S DL E G+ II KI + L LE I ++
Sbjct: 91 GFKAICTPF--DEESVDLIEAHGIEII-----KIASCSFTDWPL-LERIARSDKPVV 139
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG,
protein structure initiative, BS SPSE, PSI; 2.38A
{Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Length = 385
Score = 30.7 bits (70), Expect = 0.33
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 124 GIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI--GCINNALLSLEAINSRGLKLI 178
+ S +E SADL + KI IN+ L L+ + +I
Sbjct: 114 QVIFLSTVC--DEGSADLLQSTSPSAF-----KIASYEINHLPL-LKYVARLNRPMI 162
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor,
TIM barrel, sialic acid synthase, transfera; HET: WQP;
1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A*
1xuu_A 3cm4_A
Length = 349
Score = 30.2 bits (69), Expect = 0.54
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 124 GIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC--INNALLSLEAINSRGLKLI 178
G+ S F + +A +++ +P KIG NN L ++ + S G +I
Sbjct: 104 GMIFISTLF--SRAAALRLQRMDIPAY-----KIGSGECNNYPL-IKLVASFGKPII 152
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 29.9 bits (68), Expect = 0.87
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 128 FSVPFHDNENSADLAEKLGLPIILVID 154
+VP HD + + A K GLPI VI+
Sbjct: 338 MAVPAHD-QRDYEFARKFGLPIKKVIE 363
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 29.6 bits (67), Expect = 0.93
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 27 LLSEFKKRGISCIGMKPIASGAYLNNKNKI 56
+L ++ G+ +G +P + A + I
Sbjct: 121 MLRTIQEAGVRHLGFEPSSGVAAKAREKGI 150
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 29.5 bits (67), Expect = 1.0
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 128 FSVPFHDNENSADLAEKLGLPIILVI 153
+VP HD + + A K GL I VI
Sbjct: 356 MAVPGHD-QRDYEFASKYGLNIKPVI 380
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.9 bits (61), Expect = 2.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 17 NIGKTIISCALLSEFKKRGISCIGMK 42
GKT + L+ RGI +K
Sbjct: 16 GTGKTTLLKKLIPALCARGIRPGLIK 41
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 27.8 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 128 FSVPFHDNENSADLAEKLGLPIILVI 153
+VP HD + + A K GL I VI
Sbjct: 119 MAVPGHD-QRDYEFASKYGLNIKPVI 143
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 27.3 bits (61), Expect = 3.7
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 10 FITGTNTNIGKTIISCALLSEFKKRGISCI 39
++ G + +GKT + A+ +E KR +S +
Sbjct: 58 YLHG-SFGVGKTYLLAAIANELAKRNVSSL 86
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 27.2 bits (61), Expect = 4.0
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 129 SVPFHDNENSADLAEKLGLPIILVID 154
VP HD + + A+K LPI +V+
Sbjct: 141 CVPAHD-QRDWEFAKKYDLPIKVVVK 165
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 26.9 bits (59), Expect = 4.6
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 11 ITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42
+ G + GKT + ++ + G +K
Sbjct: 9 VVGY-KHSGKTTLMEKWVAAAVREGWRVGTVK 39
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 26.9 bits (59), Expect = 4.7
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 17 NIGKTIISCALLSEFKKRGISCIGMK 42
+ GKT + ++ ++RG+ +K
Sbjct: 12 DSGKTTLITRMMPILRERGLRVAVVK 37
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 27.2 bits (61), Expect = 4.7
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 13 GTNTNIGKTIISCALLSEFKKRGISCIGMKP 43
G N I + + +L S G P
Sbjct: 400 GGNVGIRRRHLQQLMLKPTYDAWSSTYGSFP 430
>3jvn_A Acetyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.61A {Vibrio fischeri}
Length = 166
Score = 26.6 bits (59), Expect = 5.9
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 60 EDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHII 107
D+ LN L++ P LFK ++ + + ++
Sbjct: 11 IDLYCLNSLMYKLHDEHHQQCPDLFKTASEIEEEKSIARYLDDPECMV 58
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 26.5 bits (59), Expect = 7.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 140 DLAEKLGLPIILVID 154
+AE+ +PII ID
Sbjct: 168 QMAERFKMPIITFID 182
>2g0t_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Length = 350
Score = 26.6 bits (58), Expect = 8.2
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 10 FITGTNTNIGKTIISCALLSEFKKRGISC 38
+ GT+ +GK + L ++GI
Sbjct: 173 GVFGTDCVVGKRTTAVQLWERALEKGIKA 201
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 26.5 bits (59), Expect = 8.3
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 140 DLAEKLGLPIILVID 154
AEK PI ID
Sbjct: 154 KQAEKFNRPIFTFID 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.416
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,526,438
Number of extensions: 205143
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 44
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)