RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14904
(233 letters)
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 107 bits (266), Expect = 4e-29
Identities = 79/225 (35%), Positives = 111/225 (49%), Gaps = 5/225 (2%)
Query: 9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
YF+TGT+T +GKT+ SCALL K G G KP+ASG + K L +
Sbjct: 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASG---SEKTPEGLRNSDALALQR 60
Query: 69 SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGF 128
++SL +NPY F P SP+ S E R I + + L D +++EG GG+
Sbjct: 61 NSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGW 120
Query: 129 SVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIV 188
P D AD + LP+ILV+ +K+GCIN+A+L+ + I GL L GWVAN
Sbjct: 121 FTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180
Query: 189 DTLFANENYIELTKYLNVTPLGRIPYLYNL-NINLISHYLDFSSL 232
A E LT+ + LG IP+L Y++ + L
Sbjct: 181 GKRHA-EYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL 224
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 27.8 bits (61), Expect = 1.0
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 6/101 (5%)
Query: 41 MKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRI 100
+ I L + + E T ++P ++ I T + +
Sbjct: 122 LSLANKM------QIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWP 175
Query: 101 INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADL 141
+ + L GI GF V E+ + L
Sbjct: 176 GGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPL 216
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.9 bits (58), Expect = 1.5
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 11 ITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNK 55
+ GKT + L+ RGI +K ++ K
Sbjct: 7 FAAWS-GTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGK 50
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 27.2 bits (59), Expect = 1.9
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 178 IGWVANHTQIVDTLFANENYIEL-TKYLNVTPLGRI 212
+G A I++ LF ++ +Y++ T G+
Sbjct: 522 LGTEATRAGIIELLF-KRGFLTKKGRYIHSTDAGKA 556
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 26.1 bits (57), Expect = 3.1
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 14 TNTNIGKTIISCALLSEFKKRGISCIGMKPIA 45
T+ T + + + ++ P
Sbjct: 173 THACTIPTTKFAKIFKDLGREDLNITSYHPGC 204
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 556
Score = 26.1 bits (56), Expect = 4.5
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 178 IGWVANHTQIVDTLFANENYIELT-KYLNVTPLGRIPYLYNLNINLISHYLDFSS 231
IG + + IVD LF NY+ + T LG + L+ Y F S
Sbjct: 472 IGRPSTYATIVDRLF-MRNYVVEKYGRMIPTKLGID-----VFRFLVRRYAKFVS 520
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 26.0 bits (56), Expect = 5.2
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 178 IGWVANHTQIVDTLFANENYIELT-KYLNVTPLGRI 212
IG + + I+ T+ + Y+ + + +G I
Sbjct: 490 IGRPSTYASIISTIQ-DRGYVRVENRRFYAEKMGEI 524
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 25.4 bits (55), Expect = 6.5
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 125 IGGFSVPFHDNENSADLAEKLGLPIILVIDL 155
+ GF + + E++ +P L+ D
Sbjct: 223 VTGFETYLGNFRVLKRMMEQMAVPCSLLSDP 253
>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter
glutaminasificans [TaxId: 474]}
Length = 331
Score = 25.1 bits (54), Expect = 7.9
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 111 NYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV 152
+ II G G S+ + L ++ GL I+
Sbjct: 234 AFAKAGVKAIIHAGTGNGSMANYLVPEVRKLHDEQGLQIVRS 275
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 25.4 bits (55), Expect = 8.3
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 125 IGGFSVPFHDNENSADLAEKLGLPIILVIDL 155
+ GF + + ++G+ L+ D
Sbjct: 226 VPGFETYLGNFRVIKRMLSEMGVGYSLLSDP 256
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 24.8 bits (53), Expect = 8.9
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 11 ITGTNTNIGKTIISCALLSEFKKRGISCIGMK 42
+ G + GKT + ++ + G +K
Sbjct: 6 VVGYK-HSGKTTLMEKWVAAAVREGWRVGTVK 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.416
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 876,981
Number of extensions: 40043
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 17
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)