BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14906
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 135/579 (23%), Positives = 229/579 (39%), Gaps = 94/579 (16%)
Query: 42 RKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSDFFHIYTSANNIIYAWRRGI 101
R L T G + V+G ++ SP D T S+ S + + W R
Sbjct: 45 RNGQLLQTLTGHSSSVWG------VAFSP---DGQTIASA-------SDDKTVKLWNRNG 88
Query: 102 DIVGTYKGHTSPVHLIL--PFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGK 159
++ T GH+S V + P G + S ++ VK+W+ + L + + + G
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGV 145
Query: 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPM 219
++ + + D V L N+ L LT S WG ++F DG
Sbjct: 146 AFSPDGQTIASAS--DDKTVKLWNRNGQLLQTLTGHS----SSVWG----VAFSPDGQ-T 194
Query: 220 MVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDK 279
+ S S+ + +WN + + Q H V G F + + ++S D T+KLW
Sbjct: 195 IASASDDKTVKLWNRNGQLL--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW---- 248
Query: 280 ADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRI-------FNTKSETSNKN 332
+ NG+LL+ GHS+ N + F + I SA+ D T+++ T + S+
Sbjct: 249 -NRNGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 306
Query: 333 LGIASAXXXXXXXXXXXEKMNEKF--------ILPPVSQFSFGLAREKDWNNIAAIHTGK 384
G+A + +K + + L S +G+A D IA+ K
Sbjct: 307 WGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366
Query: 385 NKVSLW----------SFYKSKMDDMFLVPERCKQAKQSKPTCVYI-THCGNFV--LIGY 431
V LW + + S + + P+ A S V + G + L G+
Sbjct: 367 T-VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 425
Query: 432 SSG------HVDRFNIQSGAHRGS---YGHDNQ-----PGHVGGVRGVVSDNLNQIVISG 477
SS D I S + + + + Q GH VRGV Q + S
Sbjct: 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 485
Query: 478 GNDQTVKVW----HFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533
+D+TVK+W QT S++ G++F Q +A DD TV + + +
Sbjct: 486 SDDKTVKLWNRNGQLLQTLTGHSSSVR---GVAFSPDGQ---TIASASDDKTVKLWNRN- 538
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+++ L+GH + FSPD + + +AS D T+++W+
Sbjct: 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 168/413 (40%), Gaps = 65/413 (15%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTS 266
V ++F DG + S S+ + +WN + + Q H V G F + + ++
Sbjct: 19 VRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLL--QTLTGHSSSVWGVAFSPDGQTIASA 75
Query: 267 SPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326
S D T+KLW + NG+LL+ GHS+ + F + I SA+ D T++++N
Sbjct: 76 SDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNG 129
Query: 327 ET-------SNKNLGIASAXXXXXXXXXXXEKM------NEKFI--LPPVSQFSFGLARE 371
+ S+ G+A + +K N + + L S +G+A
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 189
Query: 372 KDWNNIAAIHTGKNKVSLW----------SFYKSKMDDMFLVPERCKQAKQSKPTCVYIT 421
D IA+ K V LW + + S + + P+ A S V +
Sbjct: 190 PDGQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Query: 422 HCGNFVLIGYSSGHVDRFN----------IQSGAHRGS---YGHDNQ-----PGHVGGVR 463
+ N L+ +GH N I S + + + + Q GH V
Sbjct: 249 NR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 307
Query: 464 GVVSDNLNQIVISGGNDQTVKVWHFK----QTGKPPLRSIKLDNGISFFRTHQESSMLAV 519
GV Q + S +D+TVK+W+ QT S+ G++F Q +A
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW---GVAFSPDGQ---TIAS 361
Query: 520 CLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
DD TV + + + +++ L+GH + FSPD + + +AS D T+++W+
Sbjct: 362 ASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 139/347 (40%), Gaps = 47/347 (13%)
Query: 245 KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYG 304
+AH V G F + + ++S D T+KLW + NG+LL+ GHS+ + F
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSP 67
Query: 305 NSSDNILSAAGDSTLR-------IFNTKSETSNKNLGIASAXXXXXXXXXXXEKM----- 352
+ I SA+ D T++ + T + S+ G+A + +K
Sbjct: 68 DG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 353 -NEKFI--LPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQ 409
N + + L S +G+A D IA+ K V LW+ + +
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWNRNGQLLQTLT-------- 177
Query: 410 AKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN 469
S V + G + V +N R GH VRGV
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 470 LNQIVISGGNDQTVKVW----HFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFT 525
Q + S +D+TVK+W QT S+ NG++F + +A DD T
Sbjct: 232 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV---NGVAF---RPDGQTIASASDDKT 285
Query: 526 VNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
V + + + +++ L+GH + FSPD + + +AS D T+++W+
Sbjct: 286 VKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 444 GAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVW----HFKQTGKPPLRSI 499
G+H G + H VRGV Q + S +D+TVK+W QT S+
Sbjct: 1 GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 60
Query: 500 KLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWL 559
G++F Q +A DD TV + + + +++ L+GH + FSPD + +
Sbjct: 61 W---GVAFSPDGQ---TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 560 ITASMDCTIRVWD 572
+AS D T+++W+
Sbjct: 114 ASASDDKTVKLWN 126
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/438 (21%), Positives = 167/438 (38%), Gaps = 88/438 (20%)
Query: 182 SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVEN 241
++K + + T E L++ V +F +D + + S + +W+ ++ +
Sbjct: 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVH 693
Query: 242 QIKKAHRKVVTGAHFL--YNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNY 299
+ H + V HF N LL T S D LKLW ++ + + GH+ N+
Sbjct: 694 TYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF----GHTNSVNH 748
Query: 300 IQFYGNSSDNIL-SAAGDSTLRIFNTKSETSNKNLGIASAXXXXXXXXXXXEKMNEKFIL 358
+F + D +L S + D TLR+++ +S K++ + ++F L
Sbjct: 749 CRF--SPDDELLASCSADGTLRLWDVRSANERKSINV------------------KRFFL 788
Query: 359 ----PP--VSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQ 412
PP V + D + I I KNKV L+ + S L+ E
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKI--IVAAKNKVLLFDIHTSG-----LLAEIHTGHHS 841
Query: 413 SKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ 472
+ C + + + +I S V+ +NI S + GH+ V GV+
Sbjct: 842 TIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLKVA-----DCRGHLSWVHGVMFSPDGS 895
Query: 473 IVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAV------------- 519
++ +DQT++VW K+ K +I L I E+ +LAV
Sbjct: 896 SFLTASDDQTIRVWETKKVCKNS--AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 953
Query: 520 --------------CL-----------DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSP 554
CL +D + II++ + GH + F+
Sbjct: 954 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013
Query: 555 DSRWLITASMDCTIRVWD 572
D + LI++S D I+VW+
Sbjct: 1014 DGKTLISSSEDSVIQVWN 1031
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 109/537 (20%), Positives = 202/537 (37%), Gaps = 102/537 (18%)
Query: 64 KLLSVSPQHEDDITC--LSSDFFHIYT-SANNIIYAWRRGI-DIVGTYKGHTSPV----- 114
KLL + HED++ C SSD +I T SA+ + W +V TY H+ V
Sbjct: 649 KLLDIKA-HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 707
Query: 115 -----HLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLE 169
HL+L G + + +K+WD+ +E M NS VN
Sbjct: 708 TNKSNHLLLATGSN------DFFLKLWDLNQKECR----------NTMFGHTNS-VNHCR 750
Query: 170 PSPVVDIIGVGLSNKKIILHNILTDESLME------FIQTWGP-------VTALSFRTDG 216
SP +++ ++ + L ++ + F+ + P V S+ DG
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 217 PPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWI 276
++V+ N + ++++ + +I H + F + L V + ++LW
Sbjct: 811 DKIIVAAKNK--VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Query: 277 FDKADGNGRLLRIRE--GHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334
D L++ + GH + + + F + S + L+A+ D T+R++ TK N +
Sbjct: 869 IDSR------LKVADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKKVCKNSAIV 921
Query: 335 IASAXXXXXXXXXXXEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYK 394
+ + NE +L +NI +
Sbjct: 922 LKQEIDVVF-------QENETMVLAV--------------DNIRGLQ----------LIA 950
Query: 395 SKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDN 454
K + +PE ++ +C ++ +V G G + + + S
Sbjct: 951 GKTGQIDYLPE-------AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS----- 998
Query: 455 QPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQES 514
GH VR + + +IS D ++VW++ QTG + + FR Q+S
Sbjct: 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQET-VKDFRLLQDS 1056
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+L+ D TV + ++ T I R + H G + S D+ + S D T ++W
Sbjct: 1057 RLLSWSFDG-TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+LA +DF + + D++ + GH + FSPD L + S D T+R+WD+ S
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 576 S 576
+
Sbjct: 775 A 775
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 208 TALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS 267
T FR ++S S G + VWN+ ++E H+ V + ++S
Sbjct: 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAISSDATKFSSTS 1104
Query: 268 PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDST--LRIFN 323
D T K+W FD L +GH+ F S D IL A GD +RI+N
Sbjct: 1105 ADKTAKIWSFDLLSPLHEL----KGHNGCVRCSAF---SLDGILLATGDDNGEIRIWN 1155
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDD----FTVNIID- 530
S D+T K+W F PL +K NG +L DD N+ D
Sbjct: 1102 STSADKTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159
Query: 531 --IDTCTIIRKLSG---HMGQLTDADFSPDSRWLITA 562
+ +C I G H G +TD FSPDS+ L++A
Sbjct: 1160 QLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 128/349 (36%), Gaps = 70/349 (20%)
Query: 257 LYNEPLLVTSSPDNTLKL---WIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSA 313
+Y + L +T +L WI K N L +R A Y + I S
Sbjct: 576 VYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAV--YHACFSQDGQRIASC 633
Query: 314 AGDSTLRIFNTKSETSNKNLGIASAXXXXXXXXXXXEKMNEKFILPPVSQFSFGLAREKD 373
D TL++F K+ET K L I K +E +L A D
Sbjct: 634 GADKTLQVF--KAETGEKLLDI---------------KAHEDEVL--------CCAFSSD 668
Query: 374 WNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS 433
+ IA K KV +W K+ + E +Q C + T+ N +L+ S
Sbjct: 669 DSYIATCSADK-KVKIWDSATGKLVHTY--DEHSEQV-----NCCHFTNKSNHLLLATGS 720
Query: 434 GH--VDRFNIQSGAHRGS-YGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQ 490
+ +++ R + +GH N H R D L + S D T+++W +
Sbjct: 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHC---RFSPDDEL---LASCSADGTLRLWDVRS 774
Query: 491 TGKPPLRSIKLDNGISFFRTHQES----SMLAVCL------DDFTVN------IIDIDTC 534
+ ++K FF + ++ ++ C D V + DI T
Sbjct: 775 ANERKSINVK-----RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829
Query: 535 TIIRKL-SGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS-QLIDC 581
++ ++ +GH + DFSP + A + +W+I S ++ DC
Sbjct: 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/438 (21%), Positives = 167/438 (38%), Gaps = 88/438 (20%)
Query: 182 SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVEN 241
++K + + T E L++ V +F +D + + S + +W+ ++ +
Sbjct: 642 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVH 700
Query: 242 QIKKAHRKVVTGAHFL--YNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNY 299
+ H + V HF N LL T S D LKLW ++ + + GH+ N+
Sbjct: 701 TYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF----GHTNSVNH 755
Query: 300 IQFYGNSSDNIL-SAAGDSTLRIFNTKSETSNKNLGIASAXXXXXXXXXXXEKMNEKFIL 358
+F + D +L S + D TLR+++ +S K++ + ++F L
Sbjct: 756 CRF--SPDDELLASCSADGTLRLWDVRSANERKSINV------------------KRFFL 795
Query: 359 ----PP--VSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQ 412
PP V + D + I I KNKV L+ + S L+ E
Sbjct: 796 SSEDPPEDVEVIVKCCSWSADGDKI--IVAAKNKVLLFDIHTSG-----LLAEIHTGHHS 848
Query: 413 SKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ 472
+ C + + + +I S V+ +NI S + GH+ V GV+
Sbjct: 849 TIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLKVA-----DCRGHLSWVHGVMFSPDGS 902
Query: 473 IVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAV------------- 519
++ +DQT++VW K+ K +I L I E+ +LAV
Sbjct: 903 SFLTASDDQTIRVWETKKVCKNS--AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 960
Query: 520 --------------CL-----------DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSP 554
CL +D + II++ + GH + F+
Sbjct: 961 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1020
Query: 555 DSRWLITASMDCTIRVWD 572
D + LI++S D I+VW+
Sbjct: 1021 DGKTLISSSEDSVIQVWN 1038
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 109/537 (20%), Positives = 202/537 (37%), Gaps = 102/537 (18%)
Query: 64 KLLSVSPQHEDDITC--LSSDFFHIYT-SANNIIYAWRRGI-DIVGTYKGHTSPV----- 114
KLL + HED++ C SSD +I T SA+ + W +V TY H+ V
Sbjct: 656 KLLDIKA-HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 714
Query: 115 -----HLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLE 169
HL+L G + + +K+WD+ +E M NS VN
Sbjct: 715 TNKSNHLLLATGSN------DFFLKLWDLNQKECR----------NTMFGHTNS-VNHCR 757
Query: 170 PSPVVDIIGVGLSNKKIILHNILTDESLME------FIQTWGP-------VTALSFRTDG 216
SP +++ ++ + L ++ + F+ + P V S+ DG
Sbjct: 758 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 817
Query: 217 PPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWI 276
++V+ N + ++++ + +I H + F + L V + ++LW
Sbjct: 818 DKIIVAAKNK--VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Query: 277 FDKADGNGRLLRIRE--GHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334
D L++ + GH + + + F + S + L+A+ D T+R++ TK N +
Sbjct: 876 IDSR------LKVADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKKVCKNSAIV 928
Query: 335 IASAXXXXXXXXXXXEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYK 394
+ + NE +L +NI +
Sbjct: 929 LKQEIDVVF-------QENETMVLAV--------------DNIRGLQ----------LIA 957
Query: 395 SKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDN 454
K + +PE ++ +C ++ +V G G + + + S
Sbjct: 958 GKTGQIDYLPE-------AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS----- 1005
Query: 455 QPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQES 514
GH VR + + +IS D ++VW++ QTG + + FR Q+S
Sbjct: 1006 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQET-VKDFRLLQDS 1063
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+L+ D TV + ++ T I R + H G + S D+ + S D T ++W
Sbjct: 1064 RLLSWSFDG-TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+LA +DF + + D++ + GH + FSPD L + S D T+R+WD+ S
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 576 S 576
+
Sbjct: 782 A 782
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 208 TALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS 267
T FR ++S S G + VWN+ ++E H+ V + ++S
Sbjct: 1053 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAISSDATKFSSTS 1111
Query: 268 PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDST--LRIFN 323
D T K+W FD L +GH+ F S D IL A GD +RI+N
Sbjct: 1112 ADKTAKIWSFDLLSPLHEL----KGHNGCVRCSAF---SLDGILLATGDDNGEIRIWN 1162
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQESSMLAVCLDDFTVNIIDID-- 532
S D+T K+W F PL +K NG + + +LA D+ + I ++
Sbjct: 1109 STSADKTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166
Query: 533 ----TCTIIRKLSG---HMGQLTDADFSPDSRWLITA 562
+C I G H G +TD FSPDS+ L++A
Sbjct: 1167 QLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 128/349 (36%), Gaps = 70/349 (20%)
Query: 257 LYNEPLLVTSSPDNTLKL---WIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSA 313
+Y + L +T +L WI K N L +R A Y + I S
Sbjct: 583 VYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAV--YHACFSQDGQRIASC 640
Query: 314 AGDSTLRIFNTKSETSNKNLGIASAXXXXXXXXXXXEKMNEKFILPPVSQFSFGLAREKD 373
D TL++F K+ET K L I K +E +L A D
Sbjct: 641 GADKTLQVF--KAETGEKLLDI---------------KAHEDEVL--------CCAFSSD 675
Query: 374 WNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS 433
+ IA K KV +W K+ + E +Q C + T+ N +L+ S
Sbjct: 676 DSYIATCSADK-KVKIWDSATGKLVHTY--DEHSEQV-----NCCHFTNKSNHLLLATGS 727
Query: 434 GH--VDRFNIQSGAHRGS-YGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQ 490
+ +++ R + +GH N H R D L + S D T+++W +
Sbjct: 728 NDFFLKLWDLNQKECRNTMFGHTNSVNHC---RFSPDDEL---LASCSADGTLRLWDVRS 781
Query: 491 TGKPPLRSIKLDNGISFFRTHQES----SMLAVCL------DDFTVN------IIDIDTC 534
+ ++K FF + ++ ++ C D V + DI T
Sbjct: 782 ANERKSINVK-----RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 836
Query: 535 TIIRKL-SGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS-QLIDC 581
++ ++ +GH + DFSP + A + +W+I S ++ DC
Sbjct: 837 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 885
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWH-----FKQTGKPPLRSIKLDNGISFFRTH 511
GH V V+ + +++S D T+KVW F++T K S++ ISF
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ---DISF---D 159
Query: 512 QESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+LA C D T+ + D IR + GH ++ P+ +++AS D TI++W
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 572 DIPSSQLIDCF 582
++ + + F
Sbjct: 220 EVQTGYCVKTF 230
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 473 IVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDID 532
++SG D+T+K+W TG + + DN + H + C DD T+ + D
Sbjct: 310 FLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Query: 533 TCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
++ L+ H +T DF + +++T S+D T++VW+
Sbjct: 369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFD 278
+MVS S + VW+ E E +K H V F ++ LL + S D T+KLW F
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 279 KADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326
+ +R GH + + N D+I+SA+ D T++++ ++
Sbjct: 181 GFE----CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQT 223
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 107/259 (41%), Gaps = 39/259 (15%)
Query: 89 SANNIIYAWR-RGIDIVGTYKGHTSPVHL--ILPFGPHLISVDEESNVKVWDIKAEETYL 145
SA+ I W +G + + T GH V I+P G H++S + +K+W+++ Y
Sbjct: 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYC 226
Query: 146 ELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQ--- 202
+F + W V ++ P+ +I +++ + + + T E E +
Sbjct: 227 VKTFTGH------REW---VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 203 -----TWGPVTALSFRTDGP-----------PMMVSGSNTGHLTVWNLEDRQVENQIKKA 246
+W P ++ S ++ P ++SGS + +W++ +
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VG 336
Query: 247 HRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS 306
H V G F +++ + D TL++W + N R ++ H + F+ +
Sbjct: 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNAHEHFVTSLDFH-KT 391
Query: 307 SDNILSAAGDSTLRIFNTK 325
+ +++ + D T++++ +
Sbjct: 392 APYVVTGSVDQTVKVWECR 410
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 111/280 (39%), Gaps = 64/280 (22%)
Query: 109 GHTSPVHLIL--PFGPHLISVDEESNVKVWDIKA----------EETYLELSFDND---- 152
GH SPV ++ P ++S E++ +KVWD + ++ ++SFD+
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 153 -------TFKIMGKRWNSCVNVLEPS----------PVVDIIGVGLSNKKIILHNILTDE 195
T K+ + C+ + P D I +K I + + T
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 196 SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVV---- 251
+ F V + DG ++ S SN + VW + ++ + ++++ HR VV
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELRE-HRHVVECIS 283
Query: 252 -------------TGAHFLYNE---PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSA 295
TG+ + P L++ S D T+K+W G L GH
Sbjct: 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV----STGMCLMTLVGHD- 338
Query: 296 PPNYIQ--FYGNSSDNILSAAGDSTLRIFNTKSETSNKNL 333
N+++ + + ILS A D TLR+++ K++ K L
Sbjct: 339 --NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESS 515
GH V+ + D+ +++ S D T+K+W F+ G +R++ D+ +S
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+ D T+ + ++ T ++ +GH + + D + + S D T+RVW + +
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 576 SQ 577
+
Sbjct: 266 KE 267
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 27/153 (17%)
Query: 447 RGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGIS 506
R +GHD+ V + N + IV S D+T+K+W QTG +
Sbjct: 186 RTMHGHDHNVSSVS-----IMPNGDHIV-SASRDKTIKMWEV-QTGYCVKTFTGHREWVR 238
Query: 507 FFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRW-------- 558
R +Q+ +++A C +D TV + + T +L H + ++P+S +
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298
Query: 559 ------------LITASMDCTIRVWDIPSSQLI 579
L++ S D TI++WD+ + +
Sbjct: 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 237 RQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAP 296
R E HR VT F ++V++S D T+K+W ++ D R +GH+
Sbjct: 97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDS 152
Query: 297 PNYIQFYGNSSDNILSAAGDSTLRIFN 323
I F +S + S + D T+++++
Sbjct: 153 VQDISF-DHSGKLLASCSADMTIKLWD 178
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 540 LSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
LSGH +T F P +++AS D TI+VWD
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 130
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 81
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 576 SQLI 579
+ +
Sbjct: 142 GKCL 145
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 471 NQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIID 530
+ +++SG D++V++W K TGK + +S +++ S++ D I D
Sbjct: 122 SNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 531 IDTCTIIRKL-SGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ ++ L ++ FSP+ ++++ A++D T+++WD + + +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 78
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 540 LSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
L+GH ++ FSP+ WL ++S D I++W
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 268 NLQTKEIVQKLQ 279
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 105 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 282
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KL+ D
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLFKSD 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 130
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + + D+ +K+W + + + KL GIS +S+
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 81
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 576 SQLI 579
+ +
Sbjct: 142 GKCL 145
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 471 NQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIID 530
+ +++SG D++V++W K TGK + +S +++ S++ D I D
Sbjct: 122 SNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 531 IDTCTIIRKL-SGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ ++ L ++ FSP+ ++++ A++D T+++WD + + +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 105 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 282
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L SS D +K+W +G+ + GH + + + +
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 78
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 540 LSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
L+GH ++ FSP+ WL +S D I++W
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIW 53
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 268 NLQTKEIVQKLQ 279
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 130
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 81
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 576 SQLI 579
+ +
Sbjct: 142 GKCL 145
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 471 NQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIID 530
+ +++SG D++V++W K TGK + +S +++ S++ D I D
Sbjct: 122 SNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 531 IDTCTIIRKL-SGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ ++ L ++ FSP+ ++++ A++D T+++WD + + +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 78
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 540 LSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
L+GH ++ FSP+ WL ++S D I++W
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 268 NLQTKEIVQKLQ 279
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 105 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 282
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KL+ D
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLYKSD 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 126
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 127 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 185
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 241
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 242 NFSVTGGKWIVSGSEDNLVYIWNLQTK 268
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 77
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 576 SQLI 579
+ +
Sbjct: 138 GKCL 141
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 471 NQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIID 530
+ +++SG D++V++W K TGK + +S +++ S++ D I D
Sbjct: 118 SNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 531 IDTCTIIRKL-SGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ ++ L ++ FSP+ ++++ A++D T+++WD + + +
Sbjct: 177 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 74
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 101 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 159
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 160 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 220 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 278
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 279 DVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 540 LSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
L+GH ++ FSP+ WL ++S D I++W
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 203
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 264 NLQTKEIVQKLQ 275
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLELS-FDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 123
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 124 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 182
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 238
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 239 NFSVTGGKWIVSGSEDNLVYIWNLQTK 265
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 74
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 576 SQLI 579
+ +
Sbjct: 135 GKCL 138
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 63/229 (27%)
Query: 414 KPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGHDNQPG 457
KPT V + F L G+ +S D+ GA+ G + G
Sbjct: 1 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISG 59
Query: 458 HVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSML 517
H G+ V + + +++S +D+T+K+W +GK L+++K + F S L
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNL 117
Query: 518 AVCLD-DFTVNIIDIDTCTIIRKLSGH--------------------------------- 543
V D +V I D+ T ++ L H
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 544 --MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 71
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 98 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 156
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 157 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 217 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 275
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 276 DVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 200
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 201 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 261 NLQTKEIVQKLQ 272
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLELS-FDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 127
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 186
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 242
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 78
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 576 SQLI 579
+ +
Sbjct: 139 GKCL 142
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 63/233 (27%)
Query: 410 AKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGHD 453
A QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 1 ATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EK 59
Query: 454 NQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQE 513
GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNP 117
Query: 514 SSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH----------------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 544 ------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 75
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 102 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 279
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 204
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 265 NLQTKEIVQKLQ 276
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 127
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 186
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 242
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 78
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 576 SQLI 579
+ +
Sbjct: 139 GKCL 142
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 63/231 (27%)
Query: 412 QSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGHDNQ 455
QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 3 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTI 61
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH G+ V + + +++S +D+T+K+W +GK L+++K + F S
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQS 119
Query: 516 MLAVCLD-DFTVNIIDIDTCTIIRKLSGH------------------------------- 543
L V D +V I D+ T ++ L H
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 544 ----MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 75
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 102 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 279
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 204
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 265 NLQTKEIVQKLQ 276
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 133
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 192
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 248
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 84
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 576 SQLI 579
+ +
Sbjct: 145 GKCL 148
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 63/234 (26%)
Query: 409 QAKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGH 452
A QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-E 64
Query: 453 DNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ 512
GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFN 122
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH---------------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 544 -------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 81
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 108 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 227 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 285
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 210
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 271 NLQTKEIVQKLQ 282
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLELS-FDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 144
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 145 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 203
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 259
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTK 286
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 95
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 576 SQLI 579
+ +
Sbjct: 156 GKCL 159
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 63/234 (26%)
Query: 409 QAKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGH 452
Q QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 17 QGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-E 75
Query: 453 DNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ 512
GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFN 133
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH---------------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 544 -------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 92
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 119 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 177
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 178 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 238 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 296
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 297 DVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 221
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 222 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 282 NLQTKEIVQKLQ 293
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 128
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 129 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 187
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 243
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQTK 270
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 79
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 576 SQLI 579
+ +
Sbjct: 140 GKCL 143
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 63/231 (27%)
Query: 412 QSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGHDNQ 455
QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 4 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTI 62
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH G+ V + + +++S +D+T+K+W +GK L+++K + F S
Sbjct: 63 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQS 120
Query: 516 MLAVCLD-DFTVNIIDIDTCTIIRKLSGH------------------------------- 543
L V D +V I D+ T ++ L H
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 544 ----MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 76
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 103 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 161
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 162 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 222 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 280
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 281 DVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 205
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 206 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 266 NLQTKEIVQKLQ 277
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 133
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 192
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 248
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 84
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 576 SQLI 579
+ +
Sbjct: 145 GKCL 148
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 63/234 (26%)
Query: 409 QAKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGH 452
A QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-E 64
Query: 453 DNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ 512
GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFN 122
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH---------------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 544 -------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 81
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 108 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 227 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 285
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 210
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 271 NLQTKEIVQKLQ 282
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 132
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 133 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 191
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 247
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQTK 274
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 83
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 576 SQLI 579
+ +
Sbjct: 144 GKCL 147
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 63/234 (26%)
Query: 409 QAKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGH 452
A QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 5 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-E 63
Query: 453 DNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ 512
GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFN 121
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH---------------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 544 -------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 80
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 107 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 165
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 166 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 226 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 284
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 285 DVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 209
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 210 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 270 NLQTKEIVQKLQ 281
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 133
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 192
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 248
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 84
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 576 SQLI 579
+ +
Sbjct: 145 GKCL 148
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 63/231 (27%)
Query: 412 QSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGHDNQ 455
QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 9 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTI 67
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH G+ V + + +++S +D+T+K+W +GK L+++K + F S
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQS 125
Query: 516 MLAVCLD-DFTVNIIDIDTCTIIRKLSGH------------------------------- 543
L V D +V I D+ T ++ L H
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 544 ----MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 81
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 108 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 227 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 285
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 210
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 271 NLQTKEIVQKLQ 282
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-----HFKQTGKPPLRSIKLDNGISFFRTH 511
GH V V + + S D+ +K+W F++T + KL GIS
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT----ISGHKL--GISDVAWS 96
Query: 512 QESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+S++L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+W
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 572 DIPSSQLI 579
D+ + + +
Sbjct: 157 DVKTGKCL 164
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLELS-FDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 149
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 150 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 208
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 264
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 265 NFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 90/239 (37%), Gaps = 63/239 (26%)
Query: 404 PERCKQAKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHR 447
P A QSKPT V + F L G+ +S D+ GA+
Sbjct: 17 PTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76
Query: 448 GSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISF 507
G + GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 77 GKF-EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVF 133
Query: 508 FRTHQESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH----------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 544 ------------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 97
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 124 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 301
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 302 DVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 226
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 227 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 287 NLQTKEIVQKLQ 298
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-----HFKQTGKPPLRSIKLDNGISFFRTH 511
GH V V + + S D+ +K+W F++T + KL GIS
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT----ISGHKL--GISDVAWS 98
Query: 512 QESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+S++L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+W
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 572 DIPSSQLI 579
D+ + + +
Sbjct: 159 DVKTGKCL 166
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLELS-FDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 151
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T + L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 152 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 210
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 211 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 266
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 267 NFSVTGGKWIVSGSEDNLVYIWNLQTK 293
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 90/239 (37%), Gaps = 63/239 (26%)
Query: 404 PERCKQAKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHR 447
P A QSKPT V + F L G+ +S D+ GA+
Sbjct: 19 PTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 78
Query: 448 GSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISF 507
G + GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 79 GKF-EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVF 135
Query: 508 FRTHQESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH----------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 544 ------------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 99
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K + L +D
Sbjct: 126 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 184
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNI-----LTD 194
++ + + W++ C+ L + +P V + + K I+ + L D
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Query: 195 ESLMEFIQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
S + ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 245 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 303
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 304 DVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 228
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 229 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 289 NLQTKEIVQKLQ 300
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLELS-FDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 130
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DNTLKLW + K G+ L+ GH I
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 81
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 576 SQLI 579
+
Sbjct: 142 GMCL 145
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 63/234 (26%)
Query: 409 QAKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGH 452
A QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 3 SATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-E 61
Query: 453 DNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ 512
GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFN 119
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH---------------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 544 -------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D T+++WD + + +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 78
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 212 FRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDN- 270
F G +VSGS + +WNL+ +++ ++ + H VV E ++ +++ +N
Sbjct: 247 FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALEND 305
Query: 271 -TLKLWIFD 278
T+KLW D
Sbjct: 306 KTIKLWKSD 314
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D T+ + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 268 NLQTKEIVQKLQ 279
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW-HFKQTGKPPLRSIKLDNGISFFRTHQESS 515
GH V V + + S D+ +K+W + + + KL GIS +S+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSN 81
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+L DD T+ I D+ + ++ L GH + +F+P S +++ S D ++R+WD+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 576 SQLI 579
+
Sbjct: 142 GMCL 145
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 124 LISVDEESNVKVWDIKAEETYLELS-FDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
L+S ++ +K+WD+ + + L N F C N +P ++I G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF---------CCNF---NPQSNLIVSGSF 130
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
++ + + ++ T L PV+A+ F DG ++VS S G +W+ Q
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYI-- 300
+ V+ F N ++ ++ DN LKLW + K G+ L+ GH I
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 301 QFYGNSSDNILSAAGDSTLRIFNTKSE 327
F I+S + D+ + I+N +++
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 63/234 (26%)
Query: 409 QAKQSKPTCVYITHCGNFVLIGY----------------SSGHVDRFNIQSGAHRGSYGH 452
A QSKPT V + F L G+ +S D+ GA+ G +
Sbjct: 3 SATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-E 61
Query: 453 DNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ 512
GH G+ V + + +++S +D+T+K+W +GK L+++K + F
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFN 119
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGH---------------------------- 543
S L V D +V I D+ T ++ L H
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 544 -------MGQLTDAD--------FSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ L D D FSP+ ++++ A++D +++WD + + +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H K V+ F N L +SS D +K+W +G+ + GH + + + +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVA-WSS 78
Query: 306 SSDNILSAAGDSTLRIFNTKSETSNKNL 333
S+ ++SA+ D TL+I++ S K L
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 106 TYKGHTSPVHLILPFGPH---LISVDEESNVKVWDIKAEETYLELSFDND---------- 152
T KGH++ V F P ++S + +V++WD+K L +D
Sbjct: 105 TLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 153 -------TFKIMGKRWNS----CVNVL--EPSPVVDIIGVGLSNKKIILHNILTDESLME 199
++ + + W++ C+ L + +P V + + K I+ + D L +
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 200 F-----IQTWGP------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248
+ ++T+ +F G +VSGS + +WNL+ +++ ++ + H
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL-QGHT 282
Query: 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFD 278
VV E ++ +++ +N T+KLW D
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-ISFFRTHQES 514
P H V V + +++S D ++W +G+ I DN +SF +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ--LTDADFS-PDSRWLITASMDCTIRVW 571
+ D + + D ++ +GH + A+FS +W+++ S D + +W
Sbjct: 208 KYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 572 DIPSSQLIDCFQ 583
++ + +++ Q
Sbjct: 268 NLQTKEIVQKLQ 279
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 9/187 (4%)
Query: 389 LWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG 448
+W + + + + +P+R + + V I+ G F L G G + +++ +G
Sbjct: 65 MWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR 122
Query: 449 SYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFF 508
+ GH V V + N+ ++SG D+T+K+W+ K ++ +S
Sbjct: 123 RF-----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177
Query: 509 RTHQESS--MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDC 566
R SS ++ C D V + ++ C + GH G L SPD + D
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 567 TIRVWDI 573
+WD+
Sbjct: 238 QAMLWDL 244
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 13/195 (6%)
Query: 137 DIKAEETYLE-LSFDNDTFKIMGKRWNSCVNVLEPSPVV-DIIGVGLSNKKIILHNILTD 194
D+ E Y + + + T + K N V + +P D+I +K II+ + D
Sbjct: 12 DLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD 71
Query: 195 ESLMEFIQTWGP-----VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRK 249
E+ Q V+ + +DG +SGS G L +W+L + H K
Sbjct: 72 ETNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFV-GHTK 129
Query: 250 VVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDN 309
V F + +V+ S D T+KLW G + E HS + ++F NSS+
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLW---NTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 310 ILSAAG-DSTLRIFN 323
I+ + G D ++++N
Sbjct: 187 IIVSCGWDKLVKVWN 201
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 9/187 (4%)
Query: 389 LWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG 448
+W + + + + +P+R + + V I+ G F L G G + +++ +G
Sbjct: 42 MWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR 99
Query: 449 SYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFF 508
+ GH V V + N+ ++SG D+T+K+W+ K ++ +S
Sbjct: 100 RF-----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 154
Query: 509 RTHQESS--MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDC 566
R SS ++ C D V + ++ C + GH G L SPD + D
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 567 TIRVWDI 573
+WD+
Sbjct: 215 QAMLWDL 221
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTS 266
V+ + +DG +SGS G L +W+L + H K V F + +V+
Sbjct: 66 VSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSG 123
Query: 267 SPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG-DSTLRIFN 323
S D T+KLW G + E HS + ++F NSS+ I+ + G D ++++N
Sbjct: 124 SRDKTIKLW---NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ--ESSMLAVCLDDFTVNIIDIDT 533
SG D+TVKVW Q+ + + G+++ + + + DD T+ I D T
Sbjct: 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+ + L GHM ++ A F P +I+ S D T+++W+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 20/212 (9%)
Query: 377 IAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHV 436
+ +++G+ V LW++ V R Q ++ N++++G +
Sbjct: 29 LTTLYSGR--VELWNYETQ-------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79
Query: 437 DRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPL 496
FN +G + H +R + V+SG +D TVK+W+++
Sbjct: 80 RVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 497 RSIKLDNGIS--FFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS-GHMGQLTDADFS 553
++ + F S+ + CLD TV + + T L+ G + D+
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 554 P--DSRWLITASMDCTIRVWDIPSSQLIDCFQ 583
P D ++ITAS D TI++WD + + +
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHF--LYNEPLLV 264
V ++F P SG + VW+L + + V + L ++P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 265 TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324
T+S D T+K+W + L EGH + ++ F+ + I+S + D TL+I+N+
Sbjct: 203 TASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNS 257
Query: 325 KSETSNKNLGIA 336
+ K L +
Sbjct: 258 STYKVEKTLNVG 269
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 119 PFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCV--NVLEPSPVVDI 176
P P+++S ++ VK+W+ + LE +F+ +M CV N +PS
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVM------CVAFNPKDPS----T 155
Query: 177 IGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGP----PMMVSGSNTGHLTVW 232
G ++ + + ++ +S F T G +++ P P M++ S+ + +W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 233 NLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275
+ + + ++ H V+ A F P++++ S D TLK+W
Sbjct: 214 DYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ--ESSMLAVCLDDFTVNIIDIDT 533
SG D+TVKVW Q+ + + G+++ + + + DD T+ I D T
Sbjct: 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+ + L GHM ++ A F P +I+ S D T+++W+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 11/164 (6%)
Query: 425 NFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVK 484
N++++G + FN +G + H +R + V+SG +D TVK
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 485 VWHFKQTGKPPLRSIKLDNGIS--FFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS- 541
+W+++ ++ + F S+ + CLD TV + + T L+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQSTPNFTLTT 181
Query: 542 GHMGQLTDADFSP--DSRWLITASMDCTIRVWDIPSSQLIDCFQ 583
G + D+ P D ++ITAS D TI++WD + + +
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHF--LYNEPLLV 264
V ++F P SG + VW+L + + V + L ++P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 265 TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324
T+S D T+K+W + L EGH + ++ F+ + I+S + D TL+I+N+
Sbjct: 203 TASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNS 257
Query: 325 KSETSNKNLGIA 336
+ K L +
Sbjct: 258 STYKVEKTLNVG 269
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 119 PFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCV--NVLEPSPVVDI 176
P P+++S ++ VK+W+ + LE +F+ +M CV N +PS
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVM------CVAFNPKDPS----T 155
Query: 177 IGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGP----PMMVSGSNTGHLTVW 232
G ++ + + ++ +S F T G +++ P P M++ S+ + +W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 233 NLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275
+ + + ++ H V+ A F P++++ S D TLK+W
Sbjct: 214 DYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNGISF--FRTHQESSMLAVCLDDFTVNIIDIDT 533
SG D+TVKVW Q+ + + G+++ + + + DD T+ I D T
Sbjct: 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+ + L GHM ++ A F P +I+ S D T+++W+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 11/164 (6%)
Query: 425 NFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVK 484
N++++G + FN +G + H +R + V+SG +D TVK
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 485 VWHFKQTGKPPLRSIKLDNGIS--FFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS- 541
+W+++ ++ + F S+ + CLD TV + + T L+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQSTPNFTLTT 181
Query: 542 GHMGQLTDADFSP--DSRWLITASMDCTIRVWDIPSSQLIDCFQ 583
G + D+ P D ++ITAS D TI++WD + + +
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHF--LYNEPLLV 264
V ++F P SG + VW+L + + V + L ++P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 265 TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324
T+S D T+K+W + L EGH + ++ F+ + I+S + D TL+I+N+
Sbjct: 203 TASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNS 257
Query: 325 KSETSNKNLGIA 336
+ K L +
Sbjct: 258 STYKVEKTLNVG 269
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 119 PFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCV--NVLEPSPVVDI 176
P P+++S ++ VK+W+ + LE +F+ +M CV N +PS
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVM------CVAFNPKDPS----T 155
Query: 177 IGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGP----PMMVSGSNTGHLTVW 232
G ++ + + ++ +S F T G +++ P P M++ S+ + +W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 233 NLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275
+ + + ++ H V+ A F P++++ S D TLK+W
Sbjct: 214 DYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNGISF--FRTHQESSMLAVCLDDFTVNIIDIDT 533
SG D+TVKVW Q+ + + G+++ + + + DD T+ I D T
Sbjct: 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+ + L GHM ++ A F P +I+ S D T+++W+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 11/164 (6%)
Query: 425 NFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVK 484
N++++G + FN +G + H +R + V+SG +D TVK
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 485 VWHFKQTGKPPLRSIKLDNGIS--FFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS- 541
+W+++ ++ + F S+ + CLD TV + + T L+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQSTPNFTLTT 181
Query: 542 GHMGQLTDADFSP--DSRWLITASMDCTIRVWDIPSSQLIDCFQ 583
G + D+ P D ++ITAS D TI++WD + + +
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHF--LYNEPLLV 264
V ++F P SG + VW+L + + V + L ++P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 265 TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324
T+S D T+K+W + L EGH + ++ F+ + I+S + D TL+I+N+
Sbjct: 203 TASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNS 257
Query: 325 KSETSNKNLGIA 336
+ K L +
Sbjct: 258 STYKVEKTLNVG 269
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 119 PFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCV--NVLEPSPVVDI 176
P P+++S ++ VK+W+ + LE +F+ +M CV N +PS
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVM------CVAFNPKDPS----T 155
Query: 177 IGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGP----PMMVSGSNTGHLTVW 232
G ++ + + ++ +S F T G +++ P P M++ S+ + +W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 233 NLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275
+ + + ++ H V+ A F P++++ S D TLK+W
Sbjct: 214 DYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 401 FLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVG 460
+ +P+R + + + V +++ GNF + + +N+Q+G + + GH
Sbjct: 56 YGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF-----LGHTK 110
Query: 461 GVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISF--FRTHQESSMLA 518
V V N+ ++SGG D ++VW+ K L + +S F ++ ++
Sbjct: 111 DVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIV 170
Query: 519 VCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQL 578
D V + D+ T ++ L GH +T SPD ++ D R+WD+ +
Sbjct: 171 SGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEA 230
Query: 579 I 579
+
Sbjct: 231 L 231
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 188 LHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAH 247
L N+ + +F+ V +++F D +VSG L VWN++ + + AH
Sbjct: 93 LWNLQNGQCQYKFLGHTKDVLSVAFSPDNR-QIVSGGRDNALRVWNVKGECMHTLSRGAH 151
Query: 248 RKVVTGAHF--LYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
V+ F + P++V+ DN +K+W GRL+ +GH+ NY+
Sbjct: 152 TDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL----ATGRLVTDLKGHT---NYVTSVTV 204
Query: 306 SSDNILSAAGD 316
S D L A+ D
Sbjct: 205 SPDGSLCASSD 215
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 218 PMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIF 277
P++VSG + VW+L ++ +K H VT + L +S D +LW
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLK-GHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Query: 278 DKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSE 327
K + L + G AP N I F N + AA + +RIF+ +++
Sbjct: 226 TKGEA---LSEMAAG--APINQICFSPNRY--WMCAATEKGIRIFDLENK 268
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 232 WNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIRE 291
+ L DR++E H V+ N V++S D++L+LW + L
Sbjct: 56 YGLPDRRLE-----GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL---- 106
Query: 292 GHSAPPNYIQFYGNSSDN--ILSAAGDSTLRIFNTKSE 327
GH+ + F S DN I+S D+ LR++N K E
Sbjct: 107 GHTKDVLSVAF---SPDNRQIVSGGRDNALRVWNVKGE 141
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 473 IVISGGNDQTVKVWHFKQT------GKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTV 526
++ISG D+TV +W + G P ++ +S QE+ D T+
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 527 NIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
+ D+ T T ++ GH ++ FSPD+R +++A + I++W+I
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 218 PMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPL------LVTSSPDNT 271
P+++SGS + +W L + + H+ + HF+ + L ++SS D T
Sbjct: 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99
Query: 272 LKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDN--ILSAAGDSTLRIFNTKSE 327
L+LW R + GH + + F S DN ILSA + ++++N E
Sbjct: 100 LRLWDLRTGTTYKRFV----GHQSEVYSVAF---SPDNRQILSAGAEREIKLWNILGE 150
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 117 ILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDI 176
+ PF P+ SV + +KVW+ + Y TFK S VN L SP
Sbjct: 180 VQPFAPYFASVGWDGRLKVWNTNFQIRY--------TFKAH----ESNVNHLSISPNGKY 227
Query: 177 IGVGLSNKKIILHNIL 192
I G +KK+++ +IL
Sbjct: 228 IATGGKDKKLLIWDIL 243
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 250 VVTGAHFLYNE--PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSS 307
+V G NE P+L++ S D T+ +W + + NG + + +++ S
Sbjct: 27 IVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ 86
Query: 308 DN--ILSAAGDSTLRIFNTKSETSNKNL 333
+N +S++ D TLR+++ ++ T+ K
Sbjct: 87 ENCFAISSSWDKTLRLWDLRTGTTYKRF 114
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSM 516
GH G V + D +++I+G +D TV+VW TG+ I + R + + M
Sbjct: 171 GHTGSVLCLQYDE--RVIITGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN--NGM 225
Query: 517 LAVCLDDFTVNIIDIDTCTII---RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
+ C D ++ + D+ + T I R L GH + DF D +++++AS D TI+VW+
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT 283
Query: 574 PSSQLI 579
+ + +
Sbjct: 284 STCEFV 289
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFD 278
++++GS+ + VW++ ++ N + V+ H +N ++VT S D ++ +W
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL---HLRFNNGMMVTCSKDRSIAVWDM- 240
Query: 279 KADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326
+ + L R+ GH A N + F I+SA+GD T++++NT +
Sbjct: 241 ASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTST 285
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 47/261 (18%)
Query: 76 ITCLSSDFFHIYTS-ANNIIYAWRRG-IDIVGTYKGHTSPVHLILPFGPH-LISVDEESN 132
+ CL D I + +N I W + ++ GHT V L L + +I+ +S
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV-LCLQYDERVIITGSSDST 194
Query: 133 VKVWDIKAEE----------TYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS 182
V+VWD+ E L L F+N K + + V + + DI
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK--DRSIAVWDMASPTDIT----- 247
Query: 183 NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242
L +L G A++ +VS S + VWN +
Sbjct: 248 -----LRRVLV-----------GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 291
Query: 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQF 302
+ R + A Y + L+V+ S DNT++LW + G LR+ EGH I+F
Sbjct: 292 LNGHKRGI---ACLQYRDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRF 344
Query: 303 YGNSSDNILSAAGDSTLRIFN 323
+ I+S A D +++++
Sbjct: 345 ---DNKRIVSGAYDGKIKVWD 362
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 521 LDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLID 580
L D T+ I D +T R L+GH G + + D R +IT S D T+RVWD+ + ++++
Sbjct: 150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 471 NQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIID 530
N ++++ D+++ VW LR + + + + + + D T+ + +
Sbjct: 223 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN 282
Query: 531 IDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
TC +R L+GH + + R +++ S D TIR+WDI
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 323
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 258 YNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDS 317
Y++ +V+ DNT+K+W DK + RI GH+ +Q+ I++ + DS
Sbjct: 141 YDDQKIVSGLRDNTIKIW--DKNTLECK--RILTGHTGSVLCLQY---DERVIITGSSDS 193
Query: 318 TLRIFNTKS 326
T+R+++ +
Sbjct: 194 TVRVWDVNT 202
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 86/434 (19%), Positives = 164/434 (37%), Gaps = 80/434 (18%)
Query: 182 SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVEN 241
++K + + T E L+E V +F TD + + S + +WN ++ +
Sbjct: 641 ADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR-FIATCSVDKKVKIWNSMTGELVH 699
Query: 242 QIKKAHRKVVTGAHFL--YNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNY 299
+ H + V HF + LL T S D LKLW ++ + + GH+ N+
Sbjct: 700 TYDE-HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF----GHTNSVNH 754
Query: 300 IQFYGNSSDNIL-SAAGDSTLRIFNTKSETSNKNLGIASAXXXXXXXXXXXEKMNEKFIL 358
+F + D +L S + D TL++++ S K++ + E ++
Sbjct: 755 CRF--SPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDME------VI 806
Query: 359 PPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCV 418
+S AR + KNK+ L+ + S L+ E + C
Sbjct: 807 VKCCSWSADGAR--------IMVAAKNKIFLFDIHTSG-----LLGEIHTGHHSTIQYCD 853
Query: 419 YITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG 478
+ + ++ S V+ +N S + + GH+ V GV+ ++
Sbjct: 854 FSPQ-NHLAVVALSQYCVELWNTDSRSKVA-----DCRGHLSWVHGVMFSPDGSSFLTSS 907
Query: 479 NDQTVKVWHFKQTGKPP------------------------LRSIKLDNGISFFRTHQ-- 512
+DQT+++W K+ K +R ++L NG RT Q
Sbjct: 908 DDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLING----RTGQID 963
Query: 513 ---ESSMLAVCL-----------DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRW 558
E+ + CL ++ + I+++ I + H + F+ D +
Sbjct: 964 YLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKT 1023
Query: 559 LITASMDCTIRVWD 572
LI++S D I+VW+
Sbjct: 1024 LISSSDDAEIQVWN 1037
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 471 NQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIID 530
N ++S D TVKVW+ K +S +H + + D T I
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADK-TAKIWS 1119
Query: 531 IDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLI 579
D + +L GH G + + FS DS L T + IR+W++ + +L+
Sbjct: 1120 FDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 37/71 (52%)
Query: 512 QESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
++ +A C D T+ + +T + ++ H ++ FS D R++ T S+D +++W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 572 DIPSSQLIDCF 582
+ + +L+ +
Sbjct: 691 NSMTGELVHTY 701
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
+LA D + + D++ + GH + FSPD + L + S D T+++WD S
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 576 S 576
+
Sbjct: 781 A 781
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNGI---SFFRTHQESSMLAVCLDDFTVNIIDID 532
S D+T K+W F PL ++ NG S F +S++LA D+ + I ++
Sbjct: 1108 STSADKTAKIWSFDLL--LPLHELRGHNGCVRCSAFSV--DSTLLATGDDNGEIRIWNVS 1163
Query: 533 TCTII--------RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577
++ + H G +TD FSPD + LI+A I+ W++ + +
Sbjct: 1164 NGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG--YIKWWNVVTGE 1214
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 208 TALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS 267
T FR ++S S G + VWN+ E H+ V ++ ++S
Sbjct: 1052 TVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFV-CHQGTVLSCDISHDATKFSSTS 1110
Query: 268 PDNTLKLWIFDKADGNGRLLRIRE--GHSAPPNYIQFYGNSSDNILSAAGDST--LRIFN 323
D T K+W FD LL + E GH+ F S D+ L A GD +RI+N
Sbjct: 1111 ADKTAKIWSFD------LLLPLHELRGHNGCVRCSAF---SVDSTLLATGDDNGEIRIWN 1161
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 119/325 (36%), Gaps = 61/325 (18%)
Query: 275 WIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334
WI K N L +R A Y + I S D TL++F K+ET K L
Sbjct: 603 WINKKNITNLSRLVVRPHTDAV--YHACFSEDGQRIASCGADKTLQVF--KAETGEKLLE 658
Query: 335 IASAXXXXXXXXXXXEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYK 394
I K +E +L A D IA K KV +W+
Sbjct: 659 I---------------KAHEDEVL--------CCAFSTDDRFIATCSVDK-KVKIWNSMT 694
Query: 395 SKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLI--GYSSGHVDRFNIQSGAHRGS-YG 451
++ + E +Q C + T+ + +L+ G S + +++ R + +G
Sbjct: 695 GELVHTY--DEHSEQV-----NCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG 747
Query: 452 HDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTH 511
H N H R D L + S D T+K+W T +SI +
Sbjct: 748 HTNSVNHC---RFSPDDKL---LASCSADGTLKLW--DATSANERKSINVKQFFLNLEDP 799
Query: 512 QESSMLAVCLDDFTVN-------------IIDIDTCTIIRKL-SGHMGQLTDADFSPDSR 557
QE + V ++ + + DI T ++ ++ +GH + DFSP +
Sbjct: 800 QEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNH 859
Query: 558 WLITASMDCTIRVWDIPS-SQLIDC 581
+ A + +W+ S S++ DC
Sbjct: 860 LAVVALSQYCVELWNTDSRSKVADC 884
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 223 GSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADG 282
G G + + L + ++ Q + H+K V F +E L++SS D +++W +
Sbjct: 985 GDENGAIEILELVNNRI-FQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQL--- 1040
Query: 283 NGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNL 333
+ + +R GH + NS +LS + D T++++N + K+
Sbjct: 1041 -DKCIFLR-GHQETVKDFRLLKNS--RLLSWSFDGTVKVWNIITGNKEKDF 1087
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 102/293 (34%), Gaps = 81/293 (27%)
Query: 64 KLLSVSPQHEDDITCLS---SDFFHIYTSANNIIYAWRRGI-DIVGTYKGHTSPV----- 114
KLL + HED++ C + D F S + + W ++V TY H+ V
Sbjct: 655 KLLEIKA-HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHF 713
Query: 115 -----HLILPFGPHLISVDEESNVKVWDIKAEETYLEL-----SFDNDTFKIMGKRWNSC 164
HL+L G + +K+WD+ +E + S ++ F K SC
Sbjct: 714 TNSSHHLLLATGS------SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASC 767
Query: 165 -----VNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPM 219
+ + + + + + N K N+ + ME I V S+ DG +
Sbjct: 768 SADGTLKLWDATSANERKSI---NVKQFFLNLEDPQEDMEVI-----VKCCSWSADGARI 819
Query: 220 MVSGSN-----------------TGH------------------------LTVWNLEDRQ 238
MV+ N TGH + +WN + R
Sbjct: 820 MVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRS 879
Query: 239 VENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIRE 291
+ H V G F + +TSS D T++LW K N ++ +E
Sbjct: 880 KVADCR-GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQE 931
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 513 ESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+ LA D +NI DI T ++ L GH + FSPDS+ L+TAS D I+++D
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 573 IPSSQL 578
+ + L
Sbjct: 235 VQHANL 240
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 205 GPVTA--LSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPL 262
GPV A L+F D + +G++ G + ++ +E + E + + +++ A + +
Sbjct: 121 GPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA-YSPDGKY 178
Query: 263 LVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIF 322
L + + D + IFD A G+LL EGH+ P + F +S +++A+ D ++I+
Sbjct: 179 LASGAIDGIIN--IFDIA--TGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIY 233
Query: 323 NTK 325
+ +
Sbjct: 234 DVQ 236
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 425 NFVLIGYSSGHVDRFNIQSGAH------RG------SYGHDNQPGHVGGVRGVVSDNLNQ 472
++ G G V+ F ++SG RG +Y D + G + G++ N+
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII--NIFD 192
Query: 473 IVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDID 532
I T K+ H + P+RS+ +S +L DD + I D+
Sbjct: 193 IA-------TGKLLHTLEGHAMPIRSLTFS---------PDSQLLVTASDDGYIKIYDVQ 236
Query: 533 TCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+ LSGH + + F PD +++S D +++VWD+ + + F
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVW--------HFKQTGKPPLRSIKLDNGISFF 508
GHV VR V D + V+SG D VKVW H Q + S++ D GI
Sbjct: 237 GHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-GI--- 290
Query: 509 RTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTI 568
H S L D ++ + D++T I L+GH + + + L++ + D T+
Sbjct: 291 --HVVSGSL-----DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTV 341
Query: 569 RVWDIPSSQLIDCFQ 583
++WDI + Q + Q
Sbjct: 342 KIWDIKTGQCLQTLQ 356
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 392 FYKSKMDDMFLVPERCKQAKQSKPTCVYITHC--GNFVLIGYSSGHVDRFNIQSGAHRGS 449
+++ +D L E+CK+ +P + F+ + S ++ + I + RG
Sbjct: 48 YWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGE 107
Query: 450 YGHDN-QPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFF 508
GH V + N+IV SG +D T+KVW TGK LR++ G +
Sbjct: 108 LKSPKVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWS-AVTGKC-LRTLVGHTG-GVW 163
Query: 509 RTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTI 568
+ +++ D T+ + + +T I L GH + +++ S D T+
Sbjct: 164 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATL 221
Query: 569 RVWDIPSSQLI 579
RVWDI + Q +
Sbjct: 222 RVWDIETGQCL 232
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 43/161 (26%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGK----------------------- 493
GH GGV S + I+ISG D+T+KVW+ +TG+
Sbjct: 157 GHTGGVWS--SQMRDNIIISGSTDRTLKVWN-AETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 494 -----PPLRSIKLDNG---------ISFFRTHQESSMLAVC-LDDFTVNIIDIDTCTIIR 538
LR ++ G ++ R Q V DF V + D +T T +
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 273
Query: 539 KLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLI 579
L GH ++ F D +++ S+D +IRVWD+ + I
Sbjct: 274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 34/223 (15%)
Query: 102 DIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLEL----------SFD- 150
+ + T GHTS V + ++S ++ ++VWDI+ + L +D
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249
Query: 151 ----NDTFKIMGKRWN----SCVNVLEP------SPVVDIIGV--GLSNKKIILHNILTD 194
+ + M K W+ +C++ L+ S D I V G + I + ++ T
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309
Query: 195 ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIK--KAHRKVVT 252
+ + + + + ++VSG+ + +W+++ Q ++ H+ VT
Sbjct: 310 NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 253 GAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSA 295
F N+ ++TSS D T+KLW + L+ + G S
Sbjct: 367 CLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 35/302 (11%)
Query: 250 VVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDN 309
V+T F N +V+ S DNTLK+W + G+ LR GH+ Q N
Sbjct: 121 VITCLQFCGNR--IVSGSDDNTLKVW----SAVTGKCLRTLVGHTGGVWSSQMRDNI--- 171
Query: 310 ILSAAGDSTLRIFNTKSETSNKNLGIASAXXXXXXXXXXXEKMNEKFILPPVSQFSFGLA 369
I+S + D TL+++N ++ L ++ + V G
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 231
Query: 370 REKDWNNIAAI----HTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVY-ITHCG 424
++AA+ + G+ VS + K+ D E C Q VY + G
Sbjct: 232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP--ETETCLHTLQGHTNRVYSLQFDG 289
Query: 425 NFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGV-VSDNLNQIVISGGNDQTV 483
V+ G + +++++G + GH G+ + DN I++SG D TV
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGMELKDN---ILVSGNADSTV 341
Query: 484 KVWHFK-----QTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIR 538
K+W K QT + P + + F + + + DD TV + D+ T IR
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-----NFVITSSDDGTVKLWDLKTGEFIR 396
Query: 539 KL 540
L
Sbjct: 397 NL 398
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 28/242 (11%)
Query: 87 YTSANNIIYAWRRG-IDIVGTYKGHTSPVHLILPF-GPHLISVDEESNVKVWDIKAEETY 144
Y + I WRRG + KGH V L F G ++S +++ +KVW +
Sbjct: 93 YIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL 152
Query: 145 LELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTW 204
L G W+S + +II G +++ + + N T E + +
Sbjct: 153 RTLVGHT------GGVWSSQMRD-------NIIISGSTDRTLKVWNAETGECIHTL---Y 196
Query: 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLV 264
G + + +VSGS L VW++E Q + + H V Y+ +V
Sbjct: 197 GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQ--YDGRRVV 253
Query: 265 TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324
+ + D +K+W + L +GH+ +QF G +++S + D+++R+++
Sbjct: 254 SGAYDFMVKVWDPETET----CLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDV 306
Query: 325 KS 326
++
Sbjct: 307 ET 308
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)
Query: 389 LWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG 448
LW +K D + V +R V ++ G F L G G + +++ +G
Sbjct: 409 LWKL--TKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR 466
Query: 449 SYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG---- 504
+ GH V V N+ ++S D+T+K+W+ G+ + G
Sbjct: 467 RF-----VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN--TLGECKYTISEGGEGHRDW 519
Query: 505 ---ISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLIT 561
+ F + ++++ D TV + ++ C + L+GH G ++ SPD +
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDK-TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 562 ASMDCTIRVWDIPSSQ 577
D + +WD+ +
Sbjct: 579 GGKDGVVLLWDLAEGK 594
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 21/169 (12%)
Query: 167 VLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGP-----VTALSFRTDGPPMMV 221
+ P DII +K IIL + D+ Q V + +DG +
Sbjct: 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-FAL 446
Query: 222 SGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW------ 275
SGS G L +W+L V + H K V F + +V++S D T+KLW
Sbjct: 447 SGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 276 IFDKADGNGRLLRIREGHSAPPNYIQFYGNS-SDNILSAAGDSTLRIFN 323
+ ++G EGH + ++F N+ I+SA+ D T++++N
Sbjct: 506 KYTISEGG-------EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 473 IVISGGNDQTVKVWHFKQTGKP-PLRSIKLDNGISFFRTHQESSMLAVCLD---DFTVNI 528
I++S D+++ +W + K + +L F SS L D + +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 529 IDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
D+ R+ GH + FS D+R +++AS D TI++W+
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPL---- 262
VTA++ D ++VS S + +W L + + A R++ +HF+ + L
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKL--TKDDKAYGVAQRRLTGHSHFVEDVVLSSDG 442
Query: 263 --LVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDN--ILSAAGDST 318
++ S D L+LW R + GH+ + F S DN I+SA+ D T
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFV----GHTKDVLSVAF---SLDNRQIVSASRDRT 495
Query: 319 LRIFNTKSE 327
++++NT E
Sbjct: 496 IKLWNTLGE 504
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 468 DNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG--ISFFRTHQESSMLAVCLDDFT 525
+ L ++S D+TVKVW+ LRS + +S + S+ A D
Sbjct: 528 NTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 526 VNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLID 580
V + D+ + L + + FSP+ WL A+ + I++WD+ S +++
Sbjct: 585 VLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE 637
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 472 QIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISF------------FRTHQES----- 514
+ +++G D T+ VW + P + D + F R H S
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 515 ---SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+++ D T+ + D+ + LSGH ++ + + + I+ASMD TIR+W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Query: 572 DIPSSQLIDCFQ 583
D+ + +L+ Q
Sbjct: 338 DLENGELMYTLQ 349
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 27/165 (16%)
Query: 180 GLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239
G +K I +++ + + L++ G V AL + G ++VSGS + VW+++ +
Sbjct: 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIK-KGC 194
Query: 240 ENQIKKAHRKVVTGAHFL--YNEPLLVTSSPDNTLKLW-------------------IFD 278
+ + H V + N +VT S DNTL +W +F
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 279 KADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFN 323
+ N + + GH A + +GN ++S + D+TL +++
Sbjct: 255 TPEENPYFVGVLRGHMASVRTVSGHGNI---VVSGSYDNTLIVWD 296
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 513 ESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
E + + DD + + D + +LSGH G + ++ L++ S D T+RVWD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWD 189
Query: 573 IPSSQLIDCFQ 583
I F+
Sbjct: 190 IKKGCCTHVFE 200
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 221 VSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKA 280
+S S + +W+LE+ ++ ++ H +V ++ LV+++ D +++ W
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQ-GHTALV--GLLRLSDKFLVSAAADGSIRGW----- 377
Query: 281 DGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326
D N + H+ FY SDNIL + ++ I+N +S
Sbjct: 378 DANDYSRKFSYHHTNLSAITTFY--VSDNILVSGSENQFNIYNLRS 421
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFL-YNEPLLVT 265
V LSF ++ +GS + +W+L + +++ ++H+ + H+ +NE +L +
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 266 SSPDNTLKLWIF----------DKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315
S D L +W D DG LL I GH+A + + N I S +
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 316 DSTLRIFNTKSETSN 330
D+ ++I+ N
Sbjct: 398 DNIMQIWQMAENIYN 412
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 513 ESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+ LA +D + I DI+ I+ L GH + D+ P L++ S D T+R+WD
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 573 IPSSQ 577
+ + Q
Sbjct: 194 LRTGQ 198
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 474 VISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ-ESSMLAVCLDDFTVNIIDID 532
++SG D+TV++W + TG+ L ++ +++G++ + +A D V + D +
Sbjct: 180 LVSGSGDRTVRIWDLR-TGQCSL-TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 533 TCTIIRKL-------SGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
T ++ +L +GH + F+ D + +++ S+D ++++W++
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 102/289 (35%), Gaps = 61/289 (21%)
Query: 78 CLSSDFFHIYTSANN-IIYAWR-RGIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNV 133
C S D + T A + +I W IV +GH ++ + P G L+S + V
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 134 KVWDIKAEETYLELSFDN----------DTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN 183
++WD++ + L LS ++ D I + V V + + + N
Sbjct: 190 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 249
Query: 184 KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI 243
+ H V ++ F DG +VSGS + +WNL++ ++
Sbjct: 250 ESGTGHK--------------DSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDS 294
Query: 244 KK-----------AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLL----- 287
K H+ V N+ +++ S D + W DK GN L+
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW--DKKSGNPLLMLQGHR 352
Query: 288 ------RIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSN 330
+ G S P Y F + +GD RI+ K N
Sbjct: 353 NSVISVAVANGSSLGPEYNVF--------ATGSGDCKARIWKYKKIAPN 393
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 552 FSPDSRWLITASMDCTIRVWDIPSSQLIDCFQ 583
FSPD ++L T + D IR+WDI + +++ Q
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 262 LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRI 321
L T + D +++W + N +++ I +GH + ++ S D ++S +GD T+RI
Sbjct: 137 FLATGAEDRLIRIWDIE----NRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRI 191
Query: 322 FNTKSETSNKNLGI 335
++ ++ + L I
Sbjct: 192 WDLRTGQCSLTLSI 205
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 462 VRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL-----DNGISFFRTHQESSM 516
+R V + + +G D+ +++W + R I + + I
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN------RKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 517 LAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576
L D TV I D+ T LS G T A D +++ S+D +RVWD +
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 577 QLID 580
L++
Sbjct: 240 FLVE 243
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 17/132 (12%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFK-----------QTGKPPLRSIKLDNGI 505
GH V VV Q V+SG D++VK+W+ + +G + I + +
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 506 SFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTD------ADFSPDSRWL 559
T Q + D V D + + L GH + + P+
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 560 ITASMDCTIRVW 571
T S DC R+W
Sbjct: 374 ATGSGDCKARIW 385
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 474 VISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR--THQESSMLAVCLDDFTVNIIDI 531
+I GG T+ +W P +++ + + + +S + C D + + D+
Sbjct: 112 LIVGGEASTLSIWDLAAP-TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170
Query: 532 DTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
T++R+ GH + D S D L T +D T+R WD+
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 462 VRGVVSDNLNQIVISGGNDQTVKVWHFKQTG-KPP---LRSIKLDNGISFFRTHQESSML 517
V V N + V +GG VKVW G K P L + DN I + + L
Sbjct: 54 VCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112
Query: 518 AVCLDDFTVNIIDIDTCT--IIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
V + T++I D+ T I +L+ SPDS+ + D I VWD+ +
Sbjct: 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 172
Query: 576 SQLIDCFQ 583
L+ FQ
Sbjct: 173 QTLVRQFQ 180
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFL-YNEPLLVT 265
V LSF ++ +GS + +W+L + +++ ++H+ + H+ +NE +L +
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 266 SSPDNTLKLWIF----------DKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315
S D L +W D DG LL I GH+A + + N I S +
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 316 DSTLRIFNTKSETSN 330
D+ +I+ N
Sbjct: 398 DNIXQIWQXAENIYN 412
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 525 TVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577
+ N D+ C R L GH G++ D++P+ W+++AS D + VW+ +SQ
Sbjct: 50 SFNPTDLVCC---RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ 99
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 69/185 (37%), Gaps = 24/185 (12%)
Query: 417 CVYITHC-----GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQP------GHVGGVRGV 465
C ++ C G V G FN+ S A R N P GH G
Sbjct: 108 CPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG----NMPVSRVLTGHKGYASSC 163
Query: 466 --VSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-----ISFFRTHQESSMLA 518
V D ++ I+G DQT +W + + + +G +S ++M
Sbjct: 164 QYVPDQETRL-ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222
Query: 519 VCLDDFTVNIIDID-TCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577
D TV + D+ T +R GH G + F PD + T S D T R++D+ +
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 578 LIDCF 582
+ +
Sbjct: 283 QLQVY 287
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 220 MVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDK 279
+VS S G L VWN Q + IK H V F N + D+ ++
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139
Query: 280 A---DGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFN 323
DGN + R+ GH + Q+ + +++ +GD T +++
Sbjct: 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWD 186
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 472 QIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISF------------FRTHQES----- 514
+ +++G D T+ VW + P + D + F R H S
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
Query: 515 ---SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+++ D T+ + D+ + LSGH ++ + + + I+AS D TIR+W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Query: 572 DIPSSQLIDCFQ 583
D+ + +L Q
Sbjct: 338 DLENGELXYTLQ 349
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 27/165 (16%)
Query: 180 GLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239
G +K I +++ + + L++ G V AL + G ++VSGS + VW+++ +
Sbjct: 138 GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIK-KGC 194
Query: 240 ENQIKKAHRKVVTGAHFL--YNEPLLVTSSPDNTLKLW-------------------IFD 278
+ + H V + N +VT S DNTL +W +F
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 279 KADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFN 323
+ N + + GH A + +GN ++S + D+TL +++
Sbjct: 255 TPEENPYFVGVLRGHXASVRTVSGHGNI---VVSGSYDNTLIVWD 296
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 221 VSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKA 280
+S S + +W+LE+ ++ ++ H +V ++ LV+++ D +++ W
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQ-GHTALV--GLLRLSDKFLVSAAADGSIRGW----- 377
Query: 281 DGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326
D N + H+ FY SDNIL + ++ I+N +S
Sbjct: 378 DANDYSRKFSYHHTNLSAITTFY--VSDNILVSGSENQFNIYNLRS 421
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 513 ESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
E + + DD + + D + +LSGH G + ++ L++ S D T+RVWD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWD 189
Query: 573 IPSSQLIDCFQ 583
I F+
Sbjct: 190 IKKGCCTHVFE 200
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFL-YNEPLLVT 265
V LSF ++ +GS + +W+L + +++ ++H+ + + +NE +L +
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 266 SSPDNTLKLWIF----------DKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315
S D L +W D DG LL I GH+A + + N I S +
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 403
Query: 316 DSTLRIFNTKSETSN 330
D+ ++++ N
Sbjct: 404 DNIMQVWQMAENVYN 418
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 469 NLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDN----------GISFFRTHQESSMLA 518
NLN ++S +D T+ +W T K R I N +++ H+ S+
Sbjct: 196 NLNGYLLSASDDHTICLWDINATPK-EHRVIDAKNIFTGHTAVVEDVAWHLLHE--SLFG 252
Query: 519 VCLDDFTVNIIDI---DTCTIIRKLSGHMGQLTDADFSPDSRWLI-TASMDCTIRVWDIP 574
DD + I D +T + H ++ F+P S +++ T S D T+ +WD+
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
Query: 575 SSQL 578
+ +L
Sbjct: 313 NLKL 316
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFL-YNEPLLVT 265
V LSF ++ +GS + +W+L + +++ ++H+ + + +NE +L +
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 266 SSPDNTLKLWIF----------DKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315
S D L +W D DG LL I GH+A + + N I S +
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399
Query: 316 DSTLRIFNTKSETSN 330
D+ ++++ N
Sbjct: 400 DNIMQVWQMAENVYN 414
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 469 NLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDN----------GISFFRTHQESSMLA 518
NLN ++S +D T+ +W T K R I N +++ H+ S+
Sbjct: 192 NLNGYLLSASDDHTICLWDINATPK-EHRVIDAKNIFTGHTAVVEDVAWHLLHE--SLFG 248
Query: 519 VCLDDFTVNIIDI---DTCTIIRKLSGHMGQLTDADFSPDSRWLI-TASMDCTIRVWDIP 574
DD + I D +T + H ++ F+P S +++ T S D T+ +WD+
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 575 SSQL 578
+ +L
Sbjct: 309 NLKL 312
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHF-LYNEPLLVT 265
V LSF ++ +GS + +W+L + +++ ++H+ + + +NE +L +
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 266 SSPDNTLKLWIF----------DKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315
S D L +W D DG LL I GH+A + + N I S +
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 395
Query: 316 DSTLRIF 322
D+ ++++
Sbjct: 396 DNIMQVW 402
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFL-YNEPLLVT 265
V LSF ++ +GS + +W+L + +++ ++H+ + + +NE +L +
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 266 SSPDNTLKLWIF----------DKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315
S D L +W D DG LL I GH+A + + N I S +
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 401
Query: 316 DSTLRIFNTKSETSN 330
D+ ++++ N
Sbjct: 402 DNIMQVWQMAENVYN 416
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 469 NLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDN----------GISFFRTHQESSMLA 518
NLN ++S +D T+ +W T K R I N +++ H+ S+
Sbjct: 194 NLNGYLLSASDDHTICLWDINATPK-EHRVIDAKNIFTGHTAVVEDVAWHLLHE--SLFG 250
Query: 519 VCLDDFTVNIIDI---DTCTIIRKLSGHMGQLTDADFSPDSRWLI-TASMDCTIRVWDIP 574
DD + I D +T + H ++ F+P S +++ T S D T+ +WD+
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 575 SSQL 578
+ +L
Sbjct: 311 NLKL 314
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYN---EPLLVTSSPDNTLKLW 275
M+V+G N G++ + N++ +++ N + H+K VT H N + L T+S D T+K+W
Sbjct: 223 MVVTGDNVGNVILLNMDGKELWNL--RMHKKKVT--HVALNPCCDWFLATASVDQTVKIW 278
Query: 276 IFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324
+ G L H P N F + + +L+ S +R+++
Sbjct: 279 DLRQVRGKASFL-YSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSA 325
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYN---EPLLVTSSPDNTLKLW 275
M+V+G N G++ + N++ +++ N + H+K VT H N + L T+S D T+K+W
Sbjct: 223 MVVTGDNVGNVILLNMDGKELWNL--RMHKKKVT--HVALNPCCDWFLATASVDQTVKIW 278
Query: 276 IFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324
+ G L H P N F + + +L+ S +R+++
Sbjct: 279 DLRQVRGKASFL-YSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSA 325
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYN---EPLLVTSSPDNTLKLW 275
M+V+G N G++ + N++ +++ N + H+K VT H N + L T+S D T+K+W
Sbjct: 224 MVVTGDNVGNVILLNMDGKELWNL--RMHKKKVT--HVALNPCCDWFLATASVDQTVKIW 279
Query: 276 IFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324
+ G L H P N F + + +L+ S +R+++
Sbjct: 280 DLRQVRGKASFL-YSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSA 326
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 496 LRSIKL---DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADF 552
+++IKL + ++ + ++E +L C D + ++ + L GH G + D
Sbjct: 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 553 SPDSRWLITASMDCTIRVWDIPSSQLI 579
+++ +T S D +I++WD+ + Q +
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCV 109
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTC 534
SG +D T +++ + + + S + + G S +L +D+T+N+ D+
Sbjct: 257 SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316
Query: 535 TIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+ + L GH +++ SPD + S D T+RVW
Sbjct: 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 475 ISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDI--D 532
+SGG D+ VW + +G+ ++ ++ R + A DD T + D+ D
Sbjct: 214 VSGGCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 533 TCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
I + + DFS R L D TI VWD+
Sbjct: 273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCFQ 583
+ ++ H L+ F+ ++TAS D T +WD+ S QL+ F
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH 193
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR------T 510
GH V V D ++ISG D+T+KVW K G+ + ++ +S R
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+S + +D V +++ I GH + SPD + +A D I +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 571 WDIPSSQLI 579
W++ + + +
Sbjct: 223 WNLAAKKAM 231
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 457 GHVGGVRGVV-SDNLNQIVISGGNDQTVKVWHFK---QTGKPPLRSIKLDNGISFFRTHQ 512
GH G V + S +++S D+T+ W Q P+RS K + I T
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
A+ D T+ + D+ T ++ GH + D + +I+ S D TI+VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 572 DI 573
I
Sbjct: 135 TI 136
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 3/169 (1%)
Query: 412 QSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLN 471
+S V I + ++ G + + I+ GH++ V V +D+ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 472 QIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDI 531
+IS GND+ VK W+ Q + I ++ I+ + +++A D + + ++
Sbjct: 167 VTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 532 DTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLID 580
+ LS ++ FSP+ WL A+ I+V+ + L+D
Sbjct: 226 AAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNL--EDRQVENQIK--KAHRKVVTGAHFLYNE 260
G VT+L+ P +++S S L W L +D++ ++ K H +V +
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 261 PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLR 320
+++S D TL+LW + R + GH + + +S I+S + D T++
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKAS-MIISGSRDKTIK 132
Query: 321 IFNTKSETSNKNLG 334
++ K + LG
Sbjct: 133 VWTIKGQCLATLLG 146
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 537 IRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+R GH + D + D + ++AS D T+R+WD+ + + F
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR------T 510
GH V V D ++ISG D+T+KVW K G+ + ++ +S R
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+S + +D V +++ I GH + SPD + +A D I +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 571 WDIPSSQLI 579
W++ + + +
Sbjct: 223 WNLAAKKAM 231
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 457 GHVGGVRGVV-SDNLNQIVISGGNDQTVKVWHFK---QTGKPPLRSIKLDNGISFFRTHQ 512
GH G V + S +++S D+T+ W Q P+RS K + I T
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
A+ D T+ + D+ T ++ GH + D + +I+ S D TI+VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 572 DI 573
I
Sbjct: 135 TI 136
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 3/169 (1%)
Query: 412 QSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLN 471
+S V I + ++ G + + I+ GH++ V V +D+ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 472 QIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDI 531
+IS GND+ VK W+ Q + I ++ I+ + +++A D + + ++
Sbjct: 167 VTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 532 DTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLID 580
+ LS ++ FSP+ WL A+ I+V+ + L+D
Sbjct: 226 AAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNL--EDRQVENQIK--KAHRKVVTGAHFLYNE 260
G VT+L+ P +++S S L W L +D++ ++ K H +V +
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 261 PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLR 320
+++S D TL+LW + R + GH + + +S I+S + D T++
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKAS-MIISGSRDKTIK 132
Query: 321 IFNTKSETSNKNLG 334
++ K + LG
Sbjct: 133 VWTIKGQCLATLLG 146
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 537 IRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+R GH + D + D + ++AS D T+R+WD+ + + F
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR------T 510
GH V V D ++ISG D+T+KVW K G+ + ++ +S R
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+S + +D V +++ I GH + SPD + +A D I +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 571 WDIPSSQLI 579
W++ + + +
Sbjct: 223 WNLAAKKAM 231
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 180 GLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL--EDR 237
G SN+ ++L L + G VT+L+ P +++S S L W L +D+
Sbjct: 1 GASNEVLVLRGTLEGHN--------GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ 52
Query: 238 QVENQIK--KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSA 295
+ ++ K H +V + +++S D TL+LW + R + GH +
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV----GHKS 108
Query: 296 PPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334
+ +S I+S + D T++++ K + LG
Sbjct: 109 DVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLG 146
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 457 GHVGGVRGVV-SDNLNQIVISGGNDQTVKVWHFK---QTGKPPLRSIKLDNGISFFRTHQ 512
GH G V + S +++S D+T+ W Q P+RS K + I T
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
A+ D T+ + D+ T ++ GH + D + +I+ S D TI+VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 572 DI 573
I
Sbjct: 135 TI 136
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 451 GHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRT 510
GH++ V V +D+ + +IS GND+ VK W+ Q + I ++ I+
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTA 204
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+ +++A D + + ++ + LS ++ FSP+ WL A+ I+V
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKV 262
Query: 571 WDIPSSQLID 580
+ + L+D
Sbjct: 263 FSLDPQYLVD 272
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 537 IRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+R GH + D + D + ++AS D T+R+WD+ + + F
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR------T 510
GH V V D ++ISG D+T+KVW K G+ + ++ +S R
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+S + +D V +++ I GH + SPD + +A D I +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 571 WDIPSSQLI 579
W++ + + +
Sbjct: 223 WNLAAKKAM 231
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 180 GLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL--EDR 237
G SN+ ++L L + G VT+L+ P +++S S L W L +D+
Sbjct: 1 GASNEVLVLRGTLEGHN--------GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ 52
Query: 238 QVENQIK--KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSA 295
+ ++ K H +V + +++S D TL+LW + R + GH +
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV----GHKS 108
Query: 296 PPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334
+ +S I+S + D T++++ K + LG
Sbjct: 109 DVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLG 146
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 457 GHVGGVRGVV-SDNLNQIVISGGNDQTVKVWHFK---QTGKPPLRSIKLDNGISFFRTHQ 512
GH G V + S +++S D+T+ W Q P+RS K + I T
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
A+ D T+ + D+ T ++ GH + D + +I+ S D TI+VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 572 DI 573
I
Sbjct: 135 TI 136
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 451 GHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRT 510
GH++ V V +D+ + +IS GND+ VK W+ Q + I ++ I+
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTA 204
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+ +++A D + + ++ + LS ++ FSP+ WL A+ I+V
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKV 262
Query: 571 WDIPSSQLID 580
+ + L+D
Sbjct: 263 FSLDPQYLVD 272
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 537 IRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+R GH + D + D + ++AS D T+R+WD+ + + F
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 220 MVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDK 279
+ G+ G + V + + ++ +I +AH +T F + L++SS D LK+W K
Sbjct: 109 FILGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-K 166
Query: 280 ADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETS 329
N R L GH A I + N+LSA+ D T+R++ + T+
Sbjct: 167 DGSNPRTLI---GHRATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTT 212
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
R L GH +TD R +++AS+D TIR+W+ + I F
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR------T 510
GH V V D ++ISG D+T+KVW K G+ + ++ +S R
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+S + +D V +++ I GH + SPD + +A D I +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 571 WDIPSSQLI 579
W++ + + +
Sbjct: 217 WNLAAKKAM 225
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 457 GHVGGVRGVV-SDNLNQIVISGGNDQTVKVWHFK---QTGKPPLRSIKLDNGISFFRTHQ 512
GH G V + S +++S D+T+ W Q P+RS K + I T
Sbjct: 9 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 68
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
A+ D T+ + D+ T ++ GH + D + +I+ S D TI+VW
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 572 DI 573
I
Sbjct: 129 TI 130
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 3/169 (1%)
Query: 412 QSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLN 471
+S V I + ++ G + + I+ GH++ V V +D+ +
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 472 QIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDI 531
+IS GND+ VK W+ Q + I ++ I+ + +++A D + + ++
Sbjct: 161 VTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Query: 532 DTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLID 580
+ LS ++ FSP+ WL A+ I+V+ + L+D
Sbjct: 220 AAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 266
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNL--EDRQVENQIK--KAHRKVVTGAHFLYNE 260
G VT+L+ P +++S S L W L +D++ ++ K H +V +
Sbjct: 12 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 71
Query: 261 PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLR 320
+++S D TL+LW + R + GH + + +S I+S + D T++
Sbjct: 72 AYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKAS-MIISGSRDKTIK 126
Query: 321 IFNTKSETSNKNLG 334
++ K + LG
Sbjct: 127 VWTIKGQCLATLLG 140
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 537 IRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+R GH + D + D + ++AS D T+R+WD+ + + F
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 97
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 220 MVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDK 279
+ G+ G + V + + ++ +I +AH +T F + L++SS D LK+W K
Sbjct: 112 FILGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-K 169
Query: 280 ADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETS 329
N R L GH A I + N+LSA+ D T+R++ + T+
Sbjct: 170 DGSNPRTLI---GHRATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTT 215
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
R L GH +TD R +++AS+D TIR+W+ + I F
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 434 GHVDRFNIQSGAHRGSYGHDN--QPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWH---F 488
G + +N G G + D+ H G V G+ + S D+T+K+W+
Sbjct: 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Query: 489 KQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLT 548
K P+ + D + T Q +++++ + F +N ++ + +I + GH +T
Sbjct: 272 KVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGF-INFVNPELGSIDQVRYGHNKAIT 328
Query: 549 DADFSPDSRWLITASMDCTIRVWDI 573
S D + L +A + I WDI
Sbjct: 329 ALSSSADGKTLFSADAEGHINSWDI 353
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 474 VISGGNDQTVKVWHFKQTGKPPLRSIKLDNG-----ISFFRTHQESSMLAVCLDDFTV-- 526
+ISG +D TV ++ PP + K G + R + + S+ A D T+
Sbjct: 163 IISGSDDNTVAIFE-----GPPFK-FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216
Query: 527 -NIIDIDTCTIIRKLS----GHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575
N +D + S H G + +SPD + +AS D TI++W++ +
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 505 ISFFRTHQESSMLAVCLDDFTVNIIDI--DTCTIIRKLSGHMGQLTDADFSPDSRWLITA 562
IS +++ + +A+C ++ V+I + + + +L H GQ+T D++PDS ++T
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 563 SMDCTIRVWDI 573
D VW +
Sbjct: 71 GTDRNAYVWTL 81
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 457 GHVGGVRGVV-SDNLNQIVISGGNDQTVKVWHF---KQTGKPPLRSIKLDNGISFFRTHQ 512
GH G V + S +++S D+T+ W Q P+RS K + I T
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 513 ESSMLAVCLD-DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
A+ D T+ + D+ T ++ GH + D + +I+ S D TI+VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 572 DI 573
I
Sbjct: 135 TI 136
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR------T 510
GH V V D +ISG D+T+KVW K G+ + ++ +S R
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+S + +D V +++ I GH + SPD + +A D I +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 571 WDIPSSQ 577
W++ + +
Sbjct: 223 WNLAAKK 229
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNL--EDRQVENQIK--KAHRKVVTGAHFLYNE 260
G VT+L+ P +++S S L W L +D++ ++ K H +V +
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 261 PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLR 320
+++S D TL+LW + R + GH + + +S I+S + D T++
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFV----GHKSDVXSVDIDKKAS-XIISGSRDKTIK 132
Query: 321 IFNTKSETSNKNLG 334
++ K + LG
Sbjct: 133 VWTIKGQCLATLLG 146
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 451 GHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRT 510
GH++ V V +D+ + +IS GND+ VK W+ Q + I ++ I+
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF-QIEADFIGHNSNINTLTA 204
Query: 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570
+ +++A D + + ++ LS ++ FSP+ WL A+ I+V
Sbjct: 205 SPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKV 262
Query: 571 WDIPSSQLID 580
+ + L+D
Sbjct: 263 FSLDPQYLVD 272
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 537 IRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
+R GH + D + D + ++AS D T+R+WD+ + + F
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 45/169 (26%)
Query: 194 DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTG 253
++ L I G V +LSF+ DG +++SGS VW E V N +AH V
Sbjct: 94 EDPLYTLIGHQGNVCSLSFQ-DG--VVISGSWDKTAKVWK-EGSLVYNL--QAHNASVWD 147
Query: 254 AHFL-YNEPLLVTSSPDNTLKLWIFDKA-------------------DGN---------- 283
A + ++E +T+S D T+KLW DK DG+
Sbjct: 148 AKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLI 207
Query: 284 -------GRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTK 325
G +LR EGH + I+ N +I+S D T+RI++ +
Sbjct: 208 KLVDXHTGDVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKE 254
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 102 DIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVW 136
D++ TY+GH S V+ I LP G ++S E+ V++W
Sbjct: 216 DVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 505 ISFFRTHQESSMLAVCLDDFTVNIIDI--DTCTIIRKLSGHMGQLTDADFSPDSRWLITA 562
IS +++ + +A+C ++ V+I + + + +L H GQ+T D++PDS ++T
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 563 SMDCTIRVWDI 573
D VW +
Sbjct: 71 GTDRNAYVWTL 81
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 543 HMGQLTDADFSPDSRWLI-TASMDCTIRVWDI 573
H ++T A+F+P WL+ T+S+D T+++WD+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDL 234
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 244 KKAHRKVVTGAHFLYN-EPLLVTSSPDNTLKLW-IFDKADGNGRLLRIREGHSAPPNYIQ 301
+K H+ VT A F + L+ TSS D T+KLW + + D N + + H P N
Sbjct: 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAY 257
Query: 302 FYGNSSDNILSAAGDSTLRIFNT 324
F S +L+ + +R++++
Sbjct: 258 FNPTDSTKLLTTDQRNEIRVYSS 280
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 543 HMGQLTDADFSPDSRWLI-TASMDCTIRVWDI 573
H ++T A+F+P WL+ T+S+D T+++WD+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDL 233
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 244 KKAHRKVVTGAHFLYN-EPLLVTSSPDNTLKLW-IFDKADGNGRLLRIREGHSAPPNYIQ 301
+K H+ VT A F + L+ TSS D T+KLW + + D N + + H P N
Sbjct: 199 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAY 256
Query: 302 FYGNSSDNILSAAGDSTLRIFNT 324
F S +L+ + +R++++
Sbjct: 257 FNPTDSTKLLTTDQRNEIRVYSS 279
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 535 TIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCFQ 583
TI + H G + D +S D + TAS D T ++WD+ S+Q I Q
Sbjct: 77 TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ 125
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQE-- 513
GH V+GV N + + D++V +W ++G+ IS + H +
Sbjct: 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY-------ECISVLQEHSQDV 156
Query: 514 --------SSMLAVCLDDFTVNIID--IDTCTIIRKLSGHMGQLTDADFSPDS---RWLI 560
++LA D TV I D + L+GH G + +DF R L
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR-LC 215
Query: 561 TASMDCTIRVW 571
+ S D T+RVW
Sbjct: 216 SGSDDSTVRVW 226
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 454 NQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLD---------NG 504
++ H +R V ++ +G D TV +W +++ R+ ++D N
Sbjct: 53 DETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD---RTFEMDLLAIIEGHENE 109
Query: 505 ISFFRTHQESSMLAVCLDDFTVNIIDIDTC----TIIRKLSGHMGQLTDADFSPDSRWLI 560
+ + LA C D +V I + D I L H + + P L
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 561 TASMDCTIRVW 571
++S D T+R+W
Sbjct: 170 SSSYDDTVRIW 180
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 539 KLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582
KL GH G ++ +F+ ++ L++AS D T+R+W + +CF
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF 285
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H ++ F LL+++S D TL++W GNG GHS + G+
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIW----HGGNGNSQNCFYGHSQSIVSASWVGD 300
Query: 306 SSDNILSAAGDSTLRIFNTKSET 328
D ++S + D ++R+++ K T
Sbjct: 301 --DKVISCSMDGSVRLWSLKQNT 321
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 194 DESLMEFIQTWGPVTALSFRTDG--PPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVV 251
D L+ I+ P+ +F + +G G+L +WNLE ++ K H++++
Sbjct: 55 DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEII 114
Query: 252 TG------AHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
P +VT S D T+K+W + D + +G + + +GN
Sbjct: 115 NAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN 174
Query: 306 S---SDNILSAAGDS-TLRIFNTKS-----ETSNKNLGIAS 337
+ + ++ A D+ +++F+ ++ ET+ KN G+ S
Sbjct: 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKN-GVCS 214
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 469 NLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNI 528
NLN V++ ++ V VW+ L ++ + + S L+V L + V+I
Sbjct: 103 NLN--VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160
Query: 529 IDIDTCTIIRKLSGHMGQL 547
D+++ T +R ++GH ++
Sbjct: 161 YDVESQTKLRTMAGHQARV 179
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSI--KLDNGISFFRTHQES 514
GH V+ V ++ + D++V VW + + S+ + H
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162
Query: 515 SMLAVCLDDFTVNII--DIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
+LA D TV + + D L GH + F P + L + S D T+R+W
Sbjct: 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3LMC|A Chain A, Crystal Structure Of Zinc-Dependent Peptidase From
Methanocorpusculum Labreanum (Strain Z), Northeast
Structural Genomics Consortium Target Mur16
Length = 210
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 360 PVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVY 419
P++ F FGLA K I + H +N+ FY DD L+ K+
Sbjct: 102 PLADFVFGLAYPKLGVAIVSPHRLQNE-----FYGKYADDSALIDRIVKEGAHEIGHLFG 156
Query: 420 ITHCGNFVLIGYSSGHVDRFN 440
+ HC N I Y ++D +
Sbjct: 157 LGHCDNPGCIXYCPRNLDELD 177
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 424 GNFVLIGYSSGHVDRFNIQSGAHRGSY--------GHDNQPGHVGGVRGVV-SDNLNQIV 474
G ++L G S G + +++++ + + Y G D+ H V V + +
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 475 ISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQES------SMLAVCLDDFTVNI 528
S D+T+KVW L++ + N +H S ++AV V +
Sbjct: 116 TSSSFDKTLKVWDTNT-----LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 529 IDIDTCTIIRKLSGHMGQLTDADFSPDSRWLI-TASMDCTIRVWDI 573
D+ + + L GH ++ +SP +++ TAS D +++WD+
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 523 DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
D T + DI+T +GH G + +PD+R ++ + D + ++WD+
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
R L GH+ ++ + DSR L++AS D + +WD
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 94
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 8/164 (4%)
Query: 416 TCVYITHCGNFVLIGYSSGHVDRFNIQS--GAHRGSYGHDNQPGHVGGVRGVVSDNLNQI 473
TC Y GN+V G +N+++ G R S GH G + + NQI
Sbjct: 113 TCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQI 168
Query: 474 VISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533
V S G D T +W + + + + +S ++ + D + + D+
Sbjct: 169 VTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL-SLAPDTRLFVSGACDASAKLWDVRE 226
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577
+ +GH + F P+ T S D T R++D+ + Q
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 270
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 523 DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
D T + DI+T +GH G + +PD+R ++ + D + ++WD+
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
R L GH+ ++ + DSR L++AS D + +WD
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD 83
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 8/164 (4%)
Query: 416 TCVYITHCGNFVLIGYSSGHVDRFNIQS--GAHRGSYGHDNQPGHVGGVRGVVSDNLNQI 473
TC Y GN+V G +N+++ G R S GH G + + NQI
Sbjct: 102 TCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQI 157
Query: 474 VISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533
V S G D T +W + + + + +S ++ + D + + D+
Sbjct: 158 VTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL-SLAPDTRLFVSGACDASAKLWDVRE 215
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577
+ +GH + F P+ T S D T R++D+ + Q
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 523 DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
D T + DI+T +GH G + +PD+R ++ + D + ++WD+
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
R L GH+ ++ + DSR L++AS D + +WD
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 8/164 (4%)
Query: 416 TCVYITHCGNFVLIGYSSGHVDRFNIQS--GAHRGSYGHDNQPGHVGGVRGVVSDNLNQI 473
TC Y GN+V G +N+++ G R S GH G + + NQI
Sbjct: 102 TCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQI 157
Query: 474 VISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533
V S G D T +W + + + + +S ++ + D + + D+
Sbjct: 158 VTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL-SLAPDTRLFVSGACDASAKLWDVRE 215
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577
+ +GH + F P+ T S D T R++D+ + Q
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDN---GISFFRTHQESSMLAVCLDDFTVNIIDID 532
+G +D T +++ + L + DN GI+ + +L DDF N+ D
Sbjct: 243 TGSDDATCRLFDLR--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 533 TCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
L+GH +++ + D + T S D +++W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 523 DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
D T + DI+T +GH G + +PD+R ++ + D + ++WD+
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
R L GH+ ++ + DSR L++AS D + +WD
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD 83
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 8/164 (4%)
Query: 416 TCVYITHCGNFVLIGYSSGHVDRFNIQS--GAHRGSYGHDNQPGHVGGVRGVVSDNLNQI 473
TC Y GN+V G +N+++ G R S GH G + + NQI
Sbjct: 102 TCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQI 157
Query: 474 VISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533
V S G D T +W + + + + +S ++ + D + + D+
Sbjct: 158 VTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL-SLAPDTRLFVSGACDASAKLWDVRE 215
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577
+ +GH + F P+ T S D T R++D+ + Q
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
R L GH+ ++ + DSR L++AS D + +WD
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 523 DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573
D T + DI+T +GH G + +PD+R ++ + D + ++WD+
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 8/164 (4%)
Query: 416 TCVYITHCGNFVLIGYSSGHVDRFNIQS--GAHRGSYGHDNQPGHVGGVRGVVSDNLNQI 473
TC Y GN+V G +N+++ G R S GH G + + NQI
Sbjct: 102 TCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQI 157
Query: 474 VISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533
V S G D T +W + + + + +S ++ + D + + D+
Sbjct: 158 VTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL-SLAPDTRLFVSGACDASAKLWDVRE 215
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577
+ +GH + F P+ T S D T R++D+ + Q
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 32/142 (22%)
Query: 468 DNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL--DNGISFF-----------RTHQES 514
D+ N + G+ Q + H KQ+ P+RS+ + D + F+ RTH +
Sbjct: 148 DSGNSLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 515 SMLAVCLD------DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSP-----------DSR 557
++ +F + + + SG + + D P DS+
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 265
Query: 558 WLITASMDCTIRVWDIPSSQLI 579
T D TIRVWD+ +S+ +
Sbjct: 266 KFATVGADATIRVWDVTTSKCV 287
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 424 GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTV 483
G FV+ S + F+ +SG Y D+Q GG+ + + +Q + G D T+
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFL-KYIEDDQEPVQGGIFALSWLD-SQKFATVGADATI 276
Query: 484 KVWHF---KQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKL 540
+VW K K L +L N ++++ LD T+N ++ +++ +
Sbjct: 277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-TLNFYELGHDEVLKTI 335
Query: 541 SGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
SGH +T +P LI+ S D I W
Sbjct: 336 SGHNKGITALTVNP----LISGSYDGRIMEW 362
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 424 GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTV 483
G FV+ S + F+ +SG Y D+Q GG+ + + +Q + G D T+
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFL-KYIEDDQEPVQGGIFALSWLD-SQKFATVGADATI 276
Query: 484 KVWHF---KQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKL 540
+VW K K L +L N ++++ LD T+N ++ +++ +
Sbjct: 277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-TLNFYELGHDEVLKTI 335
Query: 541 SGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
SGH +T +P LI+ S D I W
Sbjct: 336 SGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 28/140 (20%)
Query: 468 DNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFF-----------RTHQESSM 516
D+ N + G+ Q + H KQ+ ++ D + F+ RTH +
Sbjct: 148 DSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGS 207
Query: 517 LAVCLD------DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSP-----------DSRWL 559
++ +F + + + SG + + D P DS+
Sbjct: 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 560 ITASMDCTIRVWDIPSSQLI 579
T D TIRVWD+ +S+ +
Sbjct: 268 ATVGADATIRVWDVTTSKCV 287
>pdb|3BWS|A Chain A, Crystal Structure Of The Leptospiral Antigen Lp49
pdb|3BWS|B Chain B, Crystal Structure Of The Leptospiral Antigen Lp49
Length = 433
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 440 NIQSGAHR-GSYGHDNQP-----GHVGGVRGVVSDNL-NQIVISGGNDQTVKVWHFKQT- 491
N +SG R G Y D + G G R +VS N N+I +S ++V+ K+
Sbjct: 277 NQESGGGRLGIYSXDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDXCCSKIEVYDLKEKK 336
Query: 492 --------GKPPLRSIKLDNGISFFR----THQESSMLAVCLDDFTVNIIDIDTCTIIRK 539
KP ++ D + H L L V +ID T T+ ++
Sbjct: 337 VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-KE 395
Query: 540 LSGHMGQLTDADFSPDSRWLITAS-MDCTIRVW 571
Q T D SPD+R+L+ + +D IRV+
Sbjct: 396 FWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVY 428
>pdb|1QSM|A Chain A, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|B Chain B, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|C Chain C, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|D Chain D, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
Length = 152
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 201 IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGA-----H 255
I+ W V A+ ++ M++ N H+T W+ +D+ N + V GA
Sbjct: 50 IKMWAAV-AVESSSEKIIGMINFFN--HMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQ 106
Query: 256 FLYNEP-LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAP 296
F+Y+E L T S W D+++ +LL ++ G+ AP
Sbjct: 107 FVYDEADKLGTPSV-----YWCTDESNHRAQLLYVKVGYKAP 143
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 540 LSGHMGQLTDADFSPDSRWLI-TASMDCTIRVWDIPSSQLI 579
+ GH + D + P + +I + S DCT+ VW+IP L+
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLV 117
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 540 LSGHMGQLTDADFSPDSRWLI-TASMDCTIRVWDIPSSQLI 579
+ GH + D + P + +I + S DCT+ VW+IP L+
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117
>pdb|1QSO|A Chain A, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|B Chain B, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|C Chain C, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|D Chain D, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
Length = 149
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 201 IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGA-----H 255
I+ W V A+ ++ M++ N H+T W+ +D+ N + V GA
Sbjct: 47 IKMWAAV-AVESSSEKIIGMINFFN--HMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQ 103
Query: 256 FLYNEP-LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAP 296
F+Y+E L T S W D+++ +LL ++ G+ AP
Sbjct: 104 FVYDEADKLGTPSV-----YWCTDESNHRAQLLYVKVGYKAP 140
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 99 RGIDIVGTYKGHTSPVHLILPFGPH-LISVDEESNVKVWDIKAEETYLELSFDNDTFKIM 157
RGID+V H + L LP G H ++ +DE ++ +A +EL ++ F
Sbjct: 84 RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFA 143
Query: 158 GKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDG- 216
+ N + L+ S I+ ++ L+DE +++ + + + + DG
Sbjct: 144 CNQSNKIIEPLQ------------SQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 217 PPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR--KVVTGAHFLYNEPLLVTSSPDNTLKL 274
++ + + NL+ + + A K+V H L + +L+ S+ ++++++
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLASNLEDSIQI 251
Query: 275 WIFD 278
D
Sbjct: 252 LRTD 255
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 528 IIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
I T + +L GH ++ SPD + +A+ D T+R+W
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 528 IIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVW 571
I T + +L GH ++ SPD + +A+ D T+R+W
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 483 VKVWHFKQTGKPPLRSIKLDNGISFF----RTHQESSMLAVCLDDFTVNIIDIDTCTI-I 537
+K+W F+Q G P + + L R + ++A D ++I D+ T+ +
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 538 RKLSGHMGQLTDADFSP-DSRWLITASMDCTIRVWD 572
L H ++ + F P + L T S D ++ WD
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,592,960
Number of Sequences: 62578
Number of extensions: 746206
Number of successful extensions: 2229
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1386
Number of HSP's gapped (non-prelim): 567
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)