Query psy14906
Match_columns 583
No_of_seqs 910 out of 2954
Neff 12.0
Searched_HMMs 29240
Date Fri Aug 16 23:58:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 4.9E-68 1.7E-72 538.9 55.5 498 28-574 16-610 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 2.4E-64 8.2E-69 512.1 63.7 496 29-582 15-545 (577)
3 1nr0_A Actin interacting prote 100.0 2E-63 7E-68 505.0 52.5 455 72-577 17-569 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 8.1E-62 2.8E-66 493.5 62.8 474 30-572 57-577 (577)
5 1pgu_A Actin interacting prote 100.0 1.9E-59 6.6E-64 480.3 57.5 509 29-576 17-615 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 3.6E-59 1.2E-63 515.3 55.2 486 30-574 615-1248(1249)
7 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-55 8.5E-60 460.7 61.1 550 15-581 2-738 (902)
8 2oaj_A Protein SNI1; WD40 repe 100.0 6.5E-56 2.2E-60 465.1 55.4 490 70-582 14-671 (902)
9 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-55 5.5E-60 486.2 52.6 478 67-582 609-1165(1249)
10 1pgu_A Actin interacting prote 100.0 1E-54 3.5E-59 445.3 50.4 458 71-582 16-580 (615)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-50 4.5E-55 428.4 52.6 462 28-572 11-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 2E-49 6.7E-54 419.4 44.8 442 64-582 4-467 (814)
13 1got_B GT-beta; complex (GTP-b 100.0 1.2E-47 4E-52 360.5 39.2 293 194-572 45-340 (340)
14 1vyh_C Platelet-activating fac 100.0 9.6E-48 3.3E-52 370.4 37.7 304 160-574 106-410 (410)
15 3iz6_a 40S ribosomal protein R 100.0 3.3E-48 1.1E-52 370.1 30.5 316 184-578 46-378 (380)
16 3ow8_A WD repeat-containing pr 100.0 6.7E-47 2.3E-51 351.3 38.5 284 160-574 30-320 (321)
17 1vyh_C Platelet-activating fac 100.0 1.2E-47 4.2E-52 369.6 34.4 299 94-489 91-410 (410)
18 1got_B GT-beta; complex (GTP-b 100.0 1E-46 3.5E-51 354.2 39.6 290 101-487 45-340 (340)
19 3ow8_A WD repeat-containing pr 100.0 1.7E-46 5.8E-51 348.7 39.3 292 102-489 23-320 (321)
20 1r5m_A SIR4-interacting protei 100.0 3.2E-46 1.1E-50 364.2 41.1 341 131-574 25-424 (425)
21 2pbi_B Guanine nucleotide-bind 100.0 4.8E-46 1.7E-50 350.9 40.3 283 160-572 62-354 (354)
22 2ynn_A Coatomer subunit beta'; 100.0 7.3E-46 2.5E-50 342.5 40.3 288 160-576 11-303 (304)
23 3frx_A Guanine nucleotide-bind 100.0 6.2E-46 2.1E-50 345.2 39.5 285 160-576 15-318 (319)
24 4g56_B MGC81050 protein; prote 100.0 3.4E-46 1.1E-50 352.2 33.5 316 118-535 14-345 (357)
25 2pbi_B Guanine nucleotide-bind 100.0 2.1E-45 7.2E-50 346.6 38.4 290 102-487 55-354 (354)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-45 6.2E-50 346.2 36.0 307 195-582 6-342 (345)
27 3iz6_a 40S ribosomal protein R 100.0 1.1E-45 3.9E-50 352.6 32.9 315 93-491 47-376 (380)
28 2ynn_A Coatomer subunit beta'; 100.0 1.3E-44 4.3E-49 334.2 37.5 292 102-490 4-302 (304)
29 4gqb_B Methylosome protein 50; 100.0 1.6E-45 5.5E-50 344.2 31.7 290 160-536 28-334 (344)
30 4g56_B MGC81050 protein; prote 100.0 4.9E-45 1.7E-49 344.2 35.2 320 168-576 11-344 (357)
31 3frx_A Guanine nucleotide-bind 100.0 2.1E-44 7.3E-49 334.9 38.7 294 102-491 8-318 (319)
32 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-44 7.5E-49 338.8 38.8 318 102-491 6-336 (345)
33 3vl1_A 26S proteasome regulato 100.0 4.8E-45 1.6E-49 355.0 34.7 339 116-575 63-419 (420)
34 1gxr_A ESG1, transducin-like e 100.0 1E-44 3.5E-49 341.8 35.5 325 160-573 7-335 (337)
35 2xzm_R RACK1; ribosome, transl 100.0 1.7E-44 6E-49 339.6 36.4 295 160-577 19-342 (343)
36 2hes_X YDR267CP; beta-propelle 100.0 6.4E-44 2.2E-48 333.4 39.4 300 140-576 3-329 (330)
37 2pm9_A Protein WEB1, protein t 100.0 5.1E-46 1.8E-50 361.5 26.1 336 162-576 12-415 (416)
38 1r5m_A SIR4-interacting protei 100.0 2.6E-44 8.7E-49 350.7 37.4 347 93-532 26-424 (425)
39 4gqb_B Methylosome protein 50; 100.0 3.7E-44 1.3E-48 335.0 35.5 304 186-578 16-334 (344)
40 2xzm_R RACK1; ribosome, transl 100.0 1.7E-43 5.8E-48 332.9 40.0 296 101-491 11-341 (343)
41 4ery_A WD repeat-containing pr 100.0 2.7E-43 9.4E-48 327.5 40.6 285 160-574 21-311 (312)
42 1gxr_A ESG1, transducin-like e 100.0 3.9E-44 1.3E-48 337.9 34.9 320 110-532 8-336 (337)
43 4ery_A WD repeat-containing pr 100.0 8E-43 2.7E-47 324.3 40.8 295 100-489 12-311 (312)
44 1erj_A Transcriptional repress 100.0 3E-43 1E-47 337.4 37.8 291 202-576 62-390 (393)
45 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-42 7.7E-47 338.1 44.6 319 103-575 110-442 (445)
46 2hes_X YDR267CP; beta-propelle 100.0 3.3E-43 1.1E-47 328.6 36.9 306 101-490 4-328 (330)
47 4aow_A Guanine nucleotide-bind 100.0 5.5E-43 1.9E-47 330.3 37.9 297 193-577 27-339 (340)
48 3v7d_B Cell division control p 100.0 5.6E-42 1.9E-46 337.7 44.8 322 102-572 112-460 (464)
49 2pm9_A Protein WEB1, protein t 100.0 1.2E-44 4E-49 351.9 24.4 329 113-534 14-415 (416)
50 1erj_A Transcriptional repress 100.0 2.5E-42 8.5E-47 331.1 36.8 306 109-491 62-390 (393)
51 3zwl_B Eukaryotic translation 100.0 4.9E-42 1.7E-46 327.9 38.4 309 196-581 24-352 (369)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-41 3.7E-46 333.3 40.6 329 63-491 108-443 (445)
53 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-43 5.5E-48 346.8 26.9 314 171-575 170-517 (524)
54 3vl1_A 26S proteasome regulato 100.0 1.4E-41 4.8E-46 330.5 37.5 339 78-533 61-419 (420)
55 4aow_A Guanine nucleotide-bind 100.0 9.8E-41 3.4E-45 314.9 40.2 296 102-491 29-338 (340)
56 3gre_A Serine/threonine-protei 100.0 2.9E-42 9.8E-47 337.0 29.7 352 96-572 47-437 (437)
57 3dm0_A Maltose-binding peripla 100.0 2.9E-41 9.8E-46 348.7 37.9 292 197-574 375-692 (694)
58 3v7d_B Cell division control p 100.0 6E-40 2E-44 323.2 45.1 320 64-488 112-461 (464)
59 1sq9_A Antiviral protein SKI8; 100.0 4.3E-41 1.5E-45 324.6 34.0 305 197-577 9-397 (397)
60 3odt_A Protein DOA1; ubiquitin 100.0 1E-39 3.5E-44 304.1 40.7 284 160-582 16-303 (313)
61 3zwl_B Eukaryotic translation 100.0 3.8E-40 1.3E-44 314.7 38.4 290 103-491 24-347 (369)
62 3ei3_B DNA damage-binding prot 100.0 1E-40 3.5E-45 319.9 34.3 298 135-575 57-382 (383)
63 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-40 3.9E-45 318.7 34.5 311 160-579 6-365 (372)
64 3k26_A Polycomb protein EED; W 100.0 1.3E-41 4.5E-46 324.5 27.5 313 160-575 16-366 (366)
65 3dm0_A Maltose-binding peripla 100.0 3.8E-40 1.3E-44 340.2 39.6 294 103-490 374-693 (694)
66 3i2n_A WD repeat-containing pr 100.0 7E-41 2.4E-45 318.3 30.2 299 199-579 13-357 (357)
67 4e54_B DNA damage-binding prot 100.0 2E-40 6.8E-45 322.6 31.4 300 195-579 110-434 (435)
68 1sq9_A Antiviral protein SKI8; 100.0 6.5E-40 2.2E-44 316.3 34.7 291 160-535 14-397 (397)
69 4gga_A P55CDC, cell division c 100.0 1.8E-39 6.3E-44 314.5 37.5 288 163-580 106-400 (420)
70 3ei3_B DNA damage-binding prot 100.0 1.5E-39 5E-44 311.9 36.2 312 101-490 63-382 (383)
71 2j04_B YDR362CP, TAU91; beta p 100.0 7.6E-41 2.6E-45 327.8 27.0 316 118-533 170-517 (524)
72 4a11_B DNA excision repair pro 100.0 5.8E-40 2E-44 318.1 32.3 362 130-574 22-404 (408)
73 4aez_A CDC20, WD repeat-contai 100.0 2.2E-39 7.4E-44 312.1 35.6 284 164-581 95-386 (401)
74 3dwl_C Actin-related protein 2 100.0 2E-41 6.8E-46 324.3 21.1 339 160-573 9-377 (377)
75 4h5i_A Guanine nucleotide-exch 100.0 6.6E-40 2.3E-44 310.0 30.2 287 205-576 15-344 (365)
76 4a11_B DNA excision repair pro 100.0 5.6E-40 1.9E-44 318.2 29.7 358 91-533 22-405 (408)
77 1k8k_C P40, ARP2/3 complex 41 100.0 4.1E-39 1.4E-43 307.9 35.3 297 106-491 3-362 (372)
78 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-38 3.6E-43 297.2 37.2 291 101-500 8-304 (313)
79 4aez_A CDC20, WD repeat-contai 100.0 4.7E-39 1.6E-43 309.7 34.3 295 104-497 84-385 (401)
80 4gga_A P55CDC, cell division c 100.0 1.3E-38 4.5E-43 308.5 37.3 278 118-491 114-396 (420)
81 3i2n_A WD repeat-containing pr 100.0 4.5E-39 1.6E-43 305.8 33.1 295 160-536 16-356 (357)
82 4ggc_A P55CDC, cell division c 100.0 2.8E-38 9.7E-43 295.1 37.6 284 164-577 27-317 (318)
83 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-41 8.5E-46 320.9 16.8 322 109-564 13-350 (588)
84 3k26_A Polycomb protein EED; W 100.0 4.1E-38 1.4E-42 300.3 37.1 247 67-329 12-321 (366)
85 4e54_B DNA damage-binding prot 100.0 3.6E-39 1.2E-43 313.8 28.5 297 160-537 117-434 (435)
86 3gre_A Serine/threonine-protei 100.0 1.9E-38 6.4E-43 310.0 32.3 337 57-487 47-437 (437)
87 1p22_A F-BOX/WD-repeat protein 100.0 7.2E-38 2.5E-42 304.9 34.3 293 107-511 129-433 (435)
88 3dwl_C Actin-related protein 2 100.0 1.5E-39 5.2E-44 311.3 21.5 296 106-488 6-377 (377)
89 4ggc_A P55CDC, cell division c 100.0 3.9E-37 1.3E-41 287.3 37.3 280 116-491 32-316 (318)
90 3dw8_B Serine/threonine-protei 100.0 1.6E-37 5.4E-42 304.7 32.8 297 160-574 26-445 (447)
91 4h5i_A Guanine nucleotide-exch 100.0 1.1E-37 3.8E-42 294.7 30.4 245 73-327 14-301 (365)
92 2pm7_B Protein transport prote 100.0 3E-37 1E-41 283.7 32.5 210 104-326 2-238 (297)
93 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-37 9.3E-42 292.7 32.2 313 198-582 5-344 (351)
94 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-36 3.9E-41 296.5 34.9 279 160-580 131-419 (435)
95 2pm7_B Protein transport prote 100.0 1.2E-36 4.2E-41 279.7 32.4 253 198-532 3-284 (297)
96 1yfq_A Cell cycle arrest prote 100.0 1.8E-36 6E-41 286.0 33.4 281 200-572 7-321 (342)
97 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-36 6.6E-41 286.9 32.8 299 104-499 4-344 (351)
98 2j04_A TAU60, YPL007P, hypothe 100.0 2.1E-38 7.1E-43 301.0 17.8 263 31-325 16-296 (588)
99 3mmy_A MRNA export factor; mRN 100.0 1.1E-36 3.9E-41 290.6 29.2 296 189-573 24-344 (368)
100 3dw8_B Serine/threonine-protei 100.0 3.9E-36 1.3E-40 294.8 33.7 304 109-489 26-445 (447)
101 1k32_A Tricorn protease; prote 100.0 7.3E-35 2.5E-39 313.7 46.0 433 25-576 9-503 (1045)
102 3jrp_A Fusion protein of prote 100.0 1.2E-36 4E-41 291.7 28.8 261 102-446 2-290 (379)
103 3bg1_A Protein SEC13 homolog; 100.0 1.1E-36 3.8E-41 282.5 27.3 253 105-442 7-292 (316)
104 3jrp_A Fusion protein of prote 100.0 7.4E-36 2.5E-40 286.1 33.5 257 160-491 9-288 (379)
105 3bg1_A Protein SEC13 homolog; 100.0 1.5E-36 5.3E-41 281.5 27.2 253 199-532 8-292 (316)
106 3bws_A Protein LP49; two-domai 100.0 6.4E-35 2.2E-39 284.7 39.2 298 185-575 102-432 (433)
107 1yfq_A Cell cycle arrest prote 100.0 1.5E-35 5.3E-40 279.5 33.2 292 104-487 4-321 (342)
108 1l0q_A Surface layer protein; 100.0 4.9E-34 1.7E-38 274.5 41.0 334 122-566 3-372 (391)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 4.6E-36 1.6E-40 289.3 25.9 293 206-578 36-345 (402)
110 1l0q_A Surface layer protein; 100.0 2.9E-34 1E-38 276.0 37.4 311 175-578 3-345 (391)
111 3mmy_A MRNA export factor; mRN 100.0 1.1E-34 3.8E-39 276.7 32.8 302 101-490 29-346 (368)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-34 5.8E-39 282.3 34.3 285 162-574 4-390 (450)
113 1k32_A Tricorn protease; prote 100.0 9E-34 3.1E-38 305.3 42.9 406 72-578 13-464 (1045)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-35 1.3E-39 282.8 28.5 284 164-536 36-345 (402)
115 3vu4_A KMHSV2; beta-propeller 100.0 2E-34 7E-39 271.7 32.5 291 188-579 3-340 (355)
116 2xyi_A Probable histone-bindin 100.0 4.6E-34 1.6E-38 277.1 31.9 258 198-576 122-411 (430)
117 3vu4_A KMHSV2; beta-propeller 100.0 2.4E-34 8.3E-39 271.1 28.6 309 135-535 3-338 (355)
118 3jro_A Fusion protein of prote 100.0 5.8E-35 2E-39 302.8 26.5 261 104-447 2-289 (753)
119 3jro_A Fusion protein of prote 100.0 1.2E-34 4.1E-39 300.4 27.0 257 160-491 7-286 (753)
120 3bws_A Protein LP49; two-domai 100.0 2.6E-33 9E-38 273.3 34.5 304 126-533 94-432 (433)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-33 1.2E-37 273.1 34.2 268 160-491 100-392 (450)
122 1nir_A Nitrite reductase; hemo 100.0 5.9E-33 2E-37 274.6 35.5 331 169-583 144-522 (543)
123 4gq1_A NUP37; propeller, trans 100.0 7.1E-34 2.4E-38 272.0 26.6 286 160-574 87-388 (393)
124 2w18_A PALB2, fancn, partner a 100.0 1.5E-32 5.1E-37 244.6 31.8 283 164-573 41-355 (356)
125 3lrv_A PRE-mRNA-splicing facto 100.0 5.3E-33 1.8E-37 261.4 29.6 278 118-532 45-332 (343)
126 4gq1_A NUP37; propeller, trans 100.0 2.4E-33 8.1E-38 268.3 25.7 335 30-490 15-389 (393)
127 2xyi_A Probable histone-bindin 100.0 1.8E-32 6.3E-37 265.9 30.4 249 67-328 122-412 (430)
128 2w18_A PALB2, fancn, partner a 100.0 2.7E-32 9.2E-37 242.9 28.5 269 35-324 44-355 (356)
129 3lrv_A PRE-mRNA-splicing facto 100.0 2E-32 6.7E-37 257.5 28.6 258 44-324 49-331 (343)
130 1nir_A Nitrite reductase; hemo 100.0 2.7E-31 9.4E-36 262.7 37.0 335 112-543 140-524 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.9E-30 1.7E-34 246.6 26.5 299 163-556 63-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 100.0 2.7E-29 9.4E-34 262.1 32.1 356 162-576 36-460 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.5E-29 2.2E-33 238.8 30.6 294 118-515 71-410 (415)
134 2ecf_A Dipeptidyl peptidase IV 100.0 1.3E-28 4.3E-33 257.1 32.8 337 112-534 37-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 100.0 7E-29 2.4E-33 258.4 25.3 357 117-578 24-446 (723)
136 2z3z_A Dipeptidyl aminopeptida 100.0 1.1E-27 3.9E-32 248.3 30.6 340 121-553 35-453 (706)
137 3u4y_A Uncharacterized protein 100.0 1.8E-26 6.2E-31 216.2 32.2 282 210-577 3-306 (331)
138 2z3z_A Dipeptidyl aminopeptida 100.0 4.1E-27 1.4E-31 244.2 28.2 358 165-577 28-437 (706)
139 3u4y_A Uncharacterized protein 100.0 7.7E-26 2.6E-30 211.9 32.6 281 118-491 6-305 (331)
140 1ri6_A Putative isomerase YBHE 100.0 1E-25 3.5E-30 212.4 31.4 278 219-578 7-313 (343)
141 1xfd_A DIP, dipeptidyl aminope 100.0 8.7E-27 3E-31 242.6 25.8 318 163-575 17-393 (723)
142 1pby_B Quinohemoprotein amine 100.0 3.1E-26 1.1E-30 215.3 25.6 279 175-545 2-322 (337)
143 1ri6_A Putative isomerase YBHE 99.9 9.7E-26 3.3E-30 212.5 27.7 304 122-515 5-335 (343)
144 3vgz_A Uncharacterized protein 99.9 5.9E-25 2E-29 208.0 31.7 277 162-524 40-335 (353)
145 3vgz_A Uncharacterized protein 99.9 3E-24 1E-28 203.1 32.7 273 205-565 41-334 (353)
146 1pby_B Quinohemoprotein amine 99.9 3E-25 1E-29 208.5 25.6 270 219-582 3-317 (337)
147 2ojh_A Uncharacterized protein 99.9 9.7E-25 3.3E-29 201.0 26.3 255 222-566 17-293 (297)
148 2ojh_A Uncharacterized protein 99.9 6.4E-25 2.2E-29 202.2 23.1 256 127-481 18-293 (297)
149 1z68_A Fibroblast activation p 99.9 7.6E-25 2.6E-29 227.5 26.0 367 167-581 20-449 (719)
150 1z68_A Fibroblast activation p 99.9 1.5E-24 5E-29 225.4 24.5 328 116-541 22-451 (719)
151 4a5s_A Dipeptidyl peptidase 4 99.9 1.7E-23 5.9E-28 217.0 32.1 363 117-580 24-454 (740)
152 1jmx_B Amine dehydrogenase; ox 99.9 7.7E-24 2.6E-28 200.0 26.8 302 167-543 4-335 (349)
153 3hfq_A Uncharacterized protein 99.9 2.8E-23 9.7E-28 195.7 29.6 285 226-579 15-323 (347)
154 3o4h_A Acylamino-acid-releasin 99.9 1.4E-23 4.9E-28 212.1 27.6 270 204-575 21-315 (582)
155 1jmx_B Amine dehydrogenase; ox 99.9 1.8E-23 6.3E-28 197.4 26.0 279 209-582 4-332 (349)
156 3scy_A Hypothetical bacterial 99.9 9.8E-22 3.3E-26 186.2 37.5 303 120-553 12-360 (361)
157 3o4h_A Acylamino-acid-releasin 99.9 1.1E-23 3.9E-28 212.9 23.4 268 162-533 21-315 (582)
158 3scy_A Hypothetical bacterial 99.9 9.2E-22 3.1E-26 186.4 33.3 292 219-580 15-344 (361)
159 3hfq_A Uncharacterized protein 99.9 7.7E-22 2.6E-26 185.8 32.4 275 130-490 15-317 (347)
160 3pe7_A Oligogalacturonate lyas 99.9 2.1E-22 7.2E-27 193.0 25.7 319 187-574 13-381 (388)
161 2oiz_A Aromatic amine dehydrog 99.9 2.8E-21 9.5E-26 181.6 31.9 304 118-557 12-360 (361)
162 3c5m_A Oligogalacturonate lyas 99.9 4.1E-22 1.4E-26 191.7 22.2 323 134-578 13-387 (396)
163 2oit_A Nucleoporin 214KDA; NH2 99.9 7.2E-21 2.5E-25 183.2 28.8 218 92-327 23-279 (434)
164 3pe7_A Oligogalacturonate lyas 99.9 1E-21 3.6E-26 188.2 22.4 301 134-531 13-380 (388)
165 4a5s_A Dipeptidyl peptidase 4 99.9 8.8E-20 3E-24 189.2 36.6 369 76-541 19-457 (740)
166 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.8E-20 6.2E-25 177.3 28.0 291 123-491 4-342 (365)
167 1qks_A Cytochrome CD1 nitrite 99.9 5.3E-19 1.8E-23 174.0 37.3 329 172-583 165-546 (567)
168 2oit_A Nucleoporin 214KDA; NH2 99.9 6.9E-20 2.4E-24 176.3 29.8 256 52-325 22-332 (434)
169 2oiz_A Aromatic amine dehydrog 99.9 3.7E-19 1.3E-23 167.1 32.7 287 91-472 30-360 (361)
170 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.5E-19 5.3E-24 170.9 29.2 280 176-534 4-342 (365)
171 1qks_A Cytochrome CD1 nitrite 99.9 1.1E-17 3.6E-22 164.8 39.5 333 116-542 162-547 (567)
172 3azo_A Aminopeptidase; POP fam 99.9 2E-19 7E-24 184.9 28.4 328 160-572 21-408 (662)
173 3c5m_A Oligogalacturonate lyas 99.9 3.3E-20 1.1E-24 178.3 20.7 295 117-536 43-387 (396)
174 3azo_A Aminopeptidase; POP fam 99.8 4.5E-19 1.5E-23 182.4 24.1 291 200-579 19-373 (662)
175 1q7f_A NHL, brain tumor CG1071 99.8 1.1E-17 3.8E-22 152.5 29.8 245 246-579 27-284 (286)
176 2gop_A Trilobed protease; beta 99.8 3.5E-17 1.2E-21 154.0 29.6 272 162-547 14-343 (347)
177 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-17 3.8E-22 155.5 25.6 255 204-533 23-322 (329)
178 3fvz_A Peptidyl-glycine alpha- 99.8 3.1E-17 1.1E-21 152.5 27.4 250 161-491 22-323 (329)
179 3sjl_D Methylamine dehydrogena 99.8 8.6E-17 2.9E-21 147.9 29.5 301 118-513 41-384 (386)
180 1q7f_A NHL, brain tumor CG1071 99.8 4.9E-17 1.7E-21 148.2 27.6 244 160-491 27-281 (286)
181 2dg1_A DRP35, lactonase; beta 99.8 5.4E-17 1.9E-21 151.6 27.2 275 162-524 5-301 (333)
182 2dg1_A DRP35, lactonase; beta 99.8 6.5E-17 2.2E-21 151.1 26.4 270 205-565 6-300 (333)
183 3dsm_A Uncharacterized protein 99.8 2.2E-16 7.4E-21 146.4 29.2 286 129-511 15-320 (328)
184 3dsm_A Uncharacterized protein 99.8 2E-16 6.9E-21 146.6 28.5 267 225-582 15-308 (328)
185 3sjl_D Methylamine dehydrogena 99.8 6.1E-16 2.1E-20 142.3 30.0 304 167-555 37-384 (386)
186 2xdw_A Prolyl endopeptidase; a 99.8 5.1E-16 1.8E-20 160.3 31.1 281 214-577 81-416 (710)
187 2xdw_A Prolyl endopeptidase; a 99.8 8.8E-16 3E-20 158.6 32.7 285 118-491 80-415 (710)
188 2gop_A Trilobed protease; beta 99.8 2.2E-16 7.6E-21 148.5 25.7 288 205-577 15-332 (347)
189 2z2n_A Virginiamycin B lyase; 99.8 5.3E-15 1.8E-19 135.8 34.4 282 202-577 12-297 (299)
190 2bkl_A Prolyl endopeptidase; m 99.8 1E-16 3.5E-21 165.0 24.6 279 170-536 75-400 (695)
191 2mad_H Methylamine dehydrogena 99.7 1.1E-14 3.8E-19 136.5 33.6 279 212-581 28-356 (373)
192 2bkl_A Prolyl endopeptidase; m 99.7 3.1E-16 1E-20 161.5 24.9 283 117-491 75-398 (695)
193 3e5z_A Putative gluconolactona 99.7 2.1E-15 7.2E-20 138.1 27.8 241 246-578 25-289 (296)
194 2z2n_A Virginiamycin B lyase; 99.7 3.5E-14 1.2E-18 130.4 35.3 281 160-535 12-297 (299)
195 2mad_H Methylamine dehydrogena 99.7 2.7E-14 9.3E-19 133.8 35.0 288 169-540 27-357 (373)
196 3e5z_A Putative gluconolactona 99.7 3E-15 1E-19 137.0 27.1 249 194-536 17-289 (296)
197 3c75_H MADH, methylamine dehyd 99.7 8.4E-15 2.9E-19 137.5 28.7 288 171-540 81-409 (426)
198 3no2_A Uncharacterized protein 99.7 4.6E-15 1.6E-19 133.0 25.9 219 259-563 4-231 (276)
199 1rwi_B Serine/threonine-protei 99.7 6.1E-15 2.1E-19 133.1 26.2 242 250-579 25-268 (270)
200 3no2_A Uncharacterized protein 99.7 8.9E-15 3.1E-19 131.1 26.3 213 44-267 6-231 (276)
201 3c75_H MADH, methylamine dehyd 99.7 2.6E-14 9E-19 134.1 28.6 301 118-513 81-423 (426)
202 1rwi_B Serine/threonine-protei 99.7 1.4E-14 4.9E-19 130.7 23.7 233 32-278 25-263 (270)
203 4a2l_A BT_4663, two-component 99.7 3.9E-11 1.3E-15 125.5 52.4 485 37-578 47-574 (795)
204 1yr2_A Prolyl oligopeptidase; 99.7 1.3E-14 4.6E-19 150.3 25.8 278 171-536 115-444 (741)
205 2qc5_A Streptogramin B lactona 99.7 4.9E-13 1.7E-17 122.7 33.3 279 203-574 18-299 (300)
206 2qc5_A Streptogramin B lactona 99.7 8.9E-13 3.1E-17 120.9 33.7 279 110-489 18-299 (300)
207 1yr2_A Prolyl oligopeptidase; 99.6 5.1E-14 1.7E-18 146.0 28.0 283 117-491 114-442 (741)
208 4a2l_A BT_4663, two-component 99.6 3.4E-10 1.2E-14 118.5 53.1 439 41-577 139-616 (795)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 9.4E-13 3.2E-17 121.7 26.7 243 249-575 18-299 (314)
210 1kb0_A Quinohemoprotein alcoho 99.6 1.5E-12 5.2E-17 132.1 29.8 324 174-575 77-567 (677)
211 3v9f_A Two-component system se 99.6 2.4E-09 8E-14 111.9 54.2 444 38-577 71-570 (781)
212 3q7m_A Lipoprotein YFGL, BAMB; 99.6 6E-12 2.1E-16 119.4 31.1 306 120-530 52-375 (376)
213 1mda_H Methylamine dehydrogena 99.6 2.9E-13 1E-17 125.0 21.1 268 219-583 34-354 (368)
214 1yiq_A Quinohemoprotein alcoho 99.6 1.2E-12 4.1E-17 133.1 27.4 311 174-560 70-533 (689)
215 1mda_H Methylamine dehydrogena 99.6 3.8E-13 1.3E-17 124.3 21.6 278 185-554 47-366 (368)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2E-12 6.8E-17 119.5 25.9 232 31-278 18-298 (314)
217 3hrp_A Uncharacterized protein 99.5 8.1E-12 2.8E-16 118.9 29.2 243 249-574 131-409 (409)
218 1yiq_A Quinohemoprotein alcoho 99.5 2.9E-12 1E-16 130.3 27.1 345 120-521 69-537 (689)
219 1kb0_A Quinohemoprotein alcoho 99.5 3.8E-12 1.3E-16 129.2 27.4 345 120-519 76-536 (677)
220 3v9f_A Two-component system se 99.5 8.7E-09 3E-13 107.6 52.6 448 37-577 23-526 (781)
221 2ghs_A AGR_C_1268P; regucalcin 99.5 1.8E-11 6.2E-16 113.1 28.8 218 31-268 49-291 (326)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.5 3.3E-11 1.1E-15 114.3 31.3 307 173-572 52-375 (376)
223 3g4e_A Regucalcin; six bladed 99.5 1.2E-11 4.2E-16 112.8 27.0 223 30-268 12-261 (297)
224 3hrp_A Uncharacterized protein 99.5 2.2E-11 7.7E-16 115.8 29.0 247 205-531 131-408 (409)
225 2qe8_A Uncharacterized protein 99.5 2.3E-12 7.9E-17 120.2 21.2 263 163-526 17-314 (343)
226 1xip_A Nucleoporin NUP159; bet 99.5 1.4E-12 4.6E-17 120.7 18.8 130 415-561 90-230 (388)
227 3dr2_A Exported gluconolactona 99.5 1.1E-11 3.8E-16 113.6 24.8 238 194-524 34-298 (305)
228 3hxj_A Pyrrolo-quinoline quino 99.5 2.8E-12 9.6E-17 119.4 19.1 253 41-324 28-282 (330)
229 1fwx_A Nitrous oxide reductase 99.5 1.1E-11 3.6E-16 119.0 23.0 310 177-578 18-434 (595)
230 2qe8_A Uncharacterized protein 99.5 1.3E-11 4.5E-16 115.0 23.5 264 205-567 17-313 (343)
231 1xip_A Nucleoporin NUP159; bet 99.5 5.1E-13 1.7E-17 123.6 13.1 179 205-477 38-231 (388)
232 3hxj_A Pyrrolo-quinoline quino 99.5 4E-12 1.4E-16 118.4 19.1 300 168-576 25-325 (330)
233 3g4e_A Regucalcin; six bladed 99.4 7.2E-11 2.5E-15 107.7 26.9 233 161-478 11-260 (297)
234 3iuj_A Prolyl endopeptidase; h 99.4 1.1E-11 3.6E-16 127.3 22.3 109 467-578 287-408 (693)
235 3dr2_A Exported gluconolactona 99.4 8.1E-11 2.8E-15 107.8 25.7 229 248-568 44-300 (305)
236 3iuj_A Prolyl endopeptidase; h 99.4 5.8E-12 2E-16 129.2 19.9 198 109-326 126-359 (693)
237 1fwx_A Nitrous oxide reductase 99.4 5.9E-11 2E-15 113.9 21.9 318 124-536 18-434 (595)
238 2ece_A 462AA long hypothetical 99.4 7.3E-10 2.5E-14 102.5 26.5 229 258-563 93-399 (462)
239 2hz6_A Endoplasmic reticulum t 99.3 1.1E-14 3.6E-19 137.0 -5.7 259 173-532 8-278 (369)
240 1kv9_A Type II quinohemoprotei 99.3 6.8E-10 2.3E-14 112.6 28.6 312 174-563 66-520 (668)
241 2ghs_A AGR_C_1268P; regucalcin 99.3 1.7E-09 5.7E-14 99.9 28.1 213 84-315 62-291 (326)
242 2ece_A 462AA long hypothetical 99.3 1.4E-09 4.8E-14 100.6 25.9 199 119-326 93-352 (462)
243 1flg_A Protein (quinoprotein e 99.3 3.7E-09 1.3E-13 105.0 28.5 384 121-559 68-543 (582)
244 2iwa_A Glutamine cyclotransfer 99.3 5.9E-09 2E-13 90.7 25.5 210 20-237 7-238 (266)
245 4a0p_A LRP6, LRP-6, low-densit 99.2 3E-06 1E-10 84.8 55.8 504 44-580 6-554 (628)
246 3s94_A LRP-6, low-density lipo 99.2 3.1E-06 1.1E-10 84.6 56.3 476 45-576 10-552 (619)
247 1kv9_A Type II quinohemoprotei 99.2 8.1E-09 2.8E-13 104.8 29.4 344 120-521 65-520 (668)
248 1npe_A Nidogen, entactin; glyc 99.2 2.3E-08 7.9E-13 89.4 28.9 188 121-326 1-198 (267)
249 2hz6_A Endoplasmic reticulum t 99.2 2.2E-11 7.6E-16 114.4 9.4 225 259-577 8-238 (369)
250 3s94_A LRP-6, low-density lipo 99.2 3.8E-06 1.3E-10 84.0 49.7 460 85-574 11-509 (619)
251 2ad6_A Methanol dehydrogenase 99.2 6.8E-08 2.3E-12 95.8 34.6 387 121-561 62-523 (571)
252 1w6s_A Methanol dehydrogenase 99.2 2.6E-08 8.7E-13 98.7 29.5 80 480-561 452-533 (599)
253 1npe_A Nidogen, entactin; glyc 99.2 7E-08 2.4E-12 86.2 28.2 243 227-557 10-263 (267)
254 3nok_A Glutaminyl cyclase; bet 99.1 8.4E-09 2.9E-13 88.3 20.6 196 18-225 39-255 (268)
255 1w6s_A Methanol dehydrogenase 99.1 9.5E-08 3.3E-12 94.6 29.6 208 121-333 62-349 (599)
256 2ad6_A Methanol dehydrogenase 99.1 4.3E-08 1.5E-12 97.3 26.2 162 417-582 239-501 (571)
257 3nol_A Glutamine cyclotransfer 99.1 8.7E-08 3E-12 82.1 24.3 196 20-225 29-245 (262)
258 1flg_A Protein (quinoprotein e 99.1 3.4E-07 1.2E-11 90.9 32.0 241 81-333 67-362 (582)
259 2iwa_A Glutamine cyclotransfer 99.1 7.7E-08 2.6E-12 83.7 22.9 160 164-334 22-189 (266)
260 3ei3_A DNA damage-binding prot 99.0 5.5E-05 1.9E-09 81.0 50.1 471 52-575 491-999 (1158)
261 4a0p_A LRP6, LRP-6, low-densit 99.0 2.9E-05 1E-09 77.7 56.5 452 32-537 38-553 (628)
262 3nol_A Glutamine cyclotransfer 99.0 7.1E-08 2.4E-12 82.7 20.8 131 423-564 95-244 (262)
263 3mbr_X Glutamine cyclotransfer 99.0 3.9E-07 1.3E-11 77.5 24.2 195 21-225 8-224 (243)
264 2fp8_A Strictosidine synthase; 99.0 6.3E-07 2.2E-11 82.5 27.2 154 414-576 127-314 (322)
265 3ei3_A DNA damage-binding prot 99.0 9.7E-05 3.3E-09 79.1 57.4 494 30-572 326-952 (1158)
266 3nok_A Glutaminyl cyclase; bet 98.9 2.2E-07 7.6E-12 79.6 20.2 128 425-563 107-253 (268)
267 2p4o_A Hypothetical protein; p 98.9 3E-06 1E-10 77.2 27.4 232 249-564 32-277 (306)
268 2p4o_A Hypothetical protein; p 98.8 3.9E-06 1.3E-10 76.5 26.5 230 163-480 32-278 (306)
269 2fp8_A Strictosidine synthase; 98.8 2.5E-06 8.5E-11 78.5 24.9 110 414-533 186-313 (322)
270 3mbr_X Glutamine cyclotransfer 98.8 3.2E-06 1.1E-10 71.9 22.6 161 162-334 20-187 (243)
271 1k3i_A Galactose oxidase precu 98.8 2.1E-07 7.3E-12 94.7 18.0 116 208-328 189-325 (656)
272 3qqz_A Putative uncharacterize 98.7 2.5E-05 8.6E-10 67.5 26.1 164 160-326 24-204 (255)
273 3qqz_A Putative uncharacterize 98.7 3.4E-05 1.2E-09 66.7 26.1 209 289-574 21-252 (255)
274 1ijq_A LDL receptor, low-densi 98.7 9.7E-05 3.3E-09 67.4 30.5 201 118-333 38-245 (316)
275 3ott_A Two-component system se 98.7 0.00069 2.4E-08 70.4 50.1 445 40-577 70-547 (758)
276 3v65_B Low-density lipoprotein 98.7 2.7E-05 9.2E-10 73.3 27.4 187 122-326 88-277 (386)
277 3v64_C Agrin; beta propeller, 98.7 9E-05 3.1E-09 68.6 30.3 242 74-333 34-282 (349)
278 3tc9_A Hypothetical hydrolase; 98.6 1.5E-05 5E-10 76.2 25.3 148 117-279 144-301 (430)
279 3v64_C Agrin; beta propeller, 98.6 6.7E-05 2.3E-09 69.4 29.0 186 122-326 45-234 (349)
280 1ijq_A LDL receptor, low-densi 98.6 0.00015 5E-09 66.2 30.8 184 123-326 3-195 (316)
281 1k3i_A Galactose oxidase precu 98.6 2.3E-06 7.9E-11 87.1 20.4 114 117-239 193-326 (656)
282 2xe4_A Oligopeptidase B; hydro 98.6 4.1E-06 1.4E-10 86.5 22.4 191 116-323 180-395 (751)
283 4hw6_A Hypothetical protein, I 98.6 2.3E-05 7.7E-10 74.8 25.7 150 117-280 146-305 (433)
284 3p5b_L Low density lipoprotein 98.6 0.00018 6.3E-09 67.8 30.1 246 219-550 85-337 (400)
285 2xe4_A Oligopeptidase B; hydro 98.5 2.9E-05 9.8E-10 80.2 25.9 116 206-327 175-305 (751)
286 3sov_A LRP-6, low-density lipo 98.5 0.00014 4.8E-09 66.1 27.4 246 219-551 6-256 (318)
287 3v65_B Low-density lipoprotein 98.5 0.0001 3.5E-09 69.3 27.3 240 76-333 79-325 (386)
288 3tc9_A Hypothetical hydrolase; 98.5 6.3E-05 2.2E-09 71.8 26.0 157 413-574 226-429 (430)
289 2xbg_A YCF48-like protein; pho 98.5 0.00026 9E-09 64.8 29.1 148 413-572 163-319 (327)
290 3amr_A 3-phytase; beta-propell 98.5 4.6E-05 1.6E-09 68.4 22.4 149 433-582 98-271 (355)
291 3sov_A LRP-6, low-density lipo 98.5 0.00014 4.8E-09 66.1 26.3 160 414-581 80-244 (318)
292 3p5b_L Low density lipoprotein 98.5 0.00035 1.2E-08 65.9 29.9 233 85-333 85-327 (400)
293 4hw6_A Hypothetical protein, I 98.4 0.00021 7.3E-09 68.1 26.2 157 413-574 228-432 (433)
294 3amr_A 3-phytase; beta-propell 98.4 7.2E-05 2.5E-09 67.1 21.1 198 219-500 42-272 (355)
295 2xzh_A Clathrin heavy chain 1; 98.4 0.00099 3.4E-08 58.5 26.9 268 130-491 48-333 (365)
296 2xbg_A YCF48-like protein; pho 98.3 0.0021 7E-08 58.9 31.7 259 41-324 44-320 (327)
297 3m0c_C LDL receptor, low-densi 98.3 0.0012 4.1E-08 67.7 30.2 236 219-541 397-640 (791)
298 3kya_A Putative phosphatase; s 98.3 0.0011 3.9E-08 63.2 27.9 161 414-579 248-479 (496)
299 3kya_A Putative phosphatase; s 98.2 0.0016 5.6E-08 62.1 27.3 233 32-278 140-474 (496)
300 1n7d_A LDL receptor, low-densi 98.2 2.4E-05 8.3E-10 79.6 15.9 243 226-553 385-634 (699)
301 1bpo_A Protein (clathrin); cla 98.2 0.0027 9.1E-08 58.3 26.8 268 130-491 47-332 (494)
302 3m0c_C LDL receptor, low-densi 98.2 0.0016 5.4E-08 66.8 28.8 233 85-333 397-639 (791)
303 2xzh_A Clathrin heavy chain 1; 98.2 0.0033 1.1E-07 55.3 29.5 224 38-278 74-331 (365)
304 3ott_A Two-component system se 98.1 0.015 5E-07 60.4 54.1 461 16-578 6-505 (758)
305 2p9w_A MAL S 1 allergenic prot 98.0 0.0012 4.3E-08 58.7 20.8 157 415-573 65-263 (334)
306 2p9w_A MAL S 1 allergenic prot 98.0 0.0013 4.5E-08 58.5 20.0 159 413-575 13-215 (334)
307 1n7d_A LDL receptor, low-densi 98.0 0.00013 4.5E-09 74.2 15.8 160 415-582 455-621 (699)
308 2ism_A Putative oxidoreductase 97.9 0.003 1E-07 58.4 23.0 102 163-267 31-153 (352)
309 2ism_A Putative oxidoreductase 97.9 0.007 2.4E-07 55.9 25.2 61 502-563 267-333 (352)
310 1bpo_A Protein (clathrin); cla 97.9 0.014 4.9E-07 53.6 30.5 225 37-278 72-330 (494)
311 3sre_A PON1, serum paraoxonase 97.9 0.0017 5.9E-08 59.2 19.6 111 413-531 165-296 (355)
312 3a9g_A Putative uncharacterize 97.9 0.014 4.8E-07 53.8 26.1 104 162-267 28-153 (354)
313 3a9g_A Putative uncharacterize 97.7 0.027 9.1E-07 52.0 26.6 62 502-563 258-330 (354)
314 2vpj_A Kelch-like protein 12; 97.7 0.0051 1.7E-07 55.5 19.6 146 173-327 14-185 (301)
315 3ii7_A Kelch-like protein 7; p 97.6 0.0036 1.2E-07 56.7 18.1 147 423-578 101-275 (306)
316 1tl2_A L10, protein (tachylect 97.6 0.0036 1.2E-07 51.7 15.5 142 413-568 41-203 (236)
317 3s25_A Hypothetical 7-bladed b 97.6 0.036 1.2E-06 49.6 23.5 210 80-325 22-254 (302)
318 2g8s_A Glucose/sorbosone dehyd 97.6 0.048 1.6E-06 50.3 25.9 70 502-573 270-350 (353)
319 3sre_A PON1, serum paraoxonase 97.6 0.022 7.4E-07 52.0 21.8 180 383-565 81-287 (355)
320 3ii7_A Kelch-like protein 7; p 97.5 0.025 8.6E-07 51.0 22.2 223 52-291 23-282 (306)
321 2xn4_A Kelch-like protein 2; s 97.5 0.011 3.8E-07 53.3 19.3 147 423-578 108-279 (302)
322 2vpj_A Kelch-like protein 12; 97.5 0.046 1.6E-06 49.1 23.4 202 53-269 31-263 (301)
323 1xi4_A Clathrin heavy chain; a 97.4 0.023 7.8E-07 60.7 22.5 267 130-490 47-331 (1630)
324 2xn4_A Kelch-like protein 2; s 97.4 0.02 7E-07 51.5 19.8 64 423-491 204-277 (302)
325 3pbp_A Nucleoporin NUP82; beta 97.4 0.022 7.4E-07 52.5 18.9 114 414-529 67-208 (452)
326 3sbq_A Nitrous-oxide reductase 97.3 0.13 4.4E-06 49.1 23.4 104 460-563 323-453 (638)
327 1zgk_A Kelch-like ECH-associat 97.3 0.023 8E-07 51.3 18.6 148 423-578 121-290 (308)
328 4asc_A Kelch repeat and BTB do 97.2 0.043 1.5E-06 49.8 19.4 107 422-535 147-279 (315)
329 4asc_A Kelch repeat and BTB do 97.1 0.074 2.5E-06 48.2 20.5 147 423-578 98-280 (315)
330 2g8s_A Glucose/sorbosone dehyd 97.1 0.16 5.4E-06 46.8 26.1 65 460-526 271-347 (353)
331 3s25_A Hypothetical 7-bladed b 97.1 0.15 5E-06 45.6 27.1 138 171-327 22-177 (302)
332 2uvk_A YJHT; unknown function, 97.0 0.044 1.5E-06 50.8 18.3 89 42-130 19-128 (357)
333 1zgk_A Kelch-like ECH-associat 97.0 0.1 3.4E-06 47.1 20.2 208 53-277 39-285 (308)
334 2uvk_A YJHT; unknown function, 97.0 0.036 1.2E-06 51.3 17.6 140 434-581 168-348 (357)
335 3pbp_A Nucleoporin NUP82; beta 97.0 0.085 2.9E-06 48.6 18.6 150 170-323 28-209 (452)
336 1xi4_A Clathrin heavy chain; a 97.0 0.051 1.7E-06 58.2 19.2 224 38-278 73-330 (1630)
337 1tl2_A L10, protein (tachylect 96.8 0.049 1.7E-06 45.1 14.2 103 163-273 41-157 (236)
338 2woz_A Kelch repeat and BTB do 96.8 0.28 9.4E-06 44.4 21.7 146 423-578 109-290 (318)
339 2woz_A Kelch repeat and BTB do 96.7 0.35 1.2E-05 43.7 21.2 151 173-330 109-291 (318)
340 3das_A Putative oxidoreductase 96.6 0.39 1.3E-05 43.6 28.9 145 413-563 140-326 (347)
341 2be1_A Serine/threonine-protei 96.6 0.0082 2.8E-07 54.2 8.8 105 470-579 110-235 (339)
342 1cru_A Protein (soluble quinop 96.1 0.26 8.8E-06 47.1 16.7 109 413-521 27-162 (454)
343 3qhy_B Beta-lactamase inhibito 95.8 0.81 2.8E-05 40.3 17.8 206 45-275 35-242 (282)
344 2be1_A Serine/threonine-protei 95.8 0.034 1.2E-06 50.2 8.6 113 424-542 10-139 (339)
345 3das_A Putative oxidoreductase 95.5 1.4 4.9E-05 39.9 29.7 114 200-315 27-159 (347)
346 1cru_A Protein (soluble quinop 95.4 1.9 6.7E-05 41.0 31.0 109 205-315 27-163 (454)
347 2zwa_A Leucine carboxyl methyl 94.5 4.4 0.00015 41.2 20.7 202 119-329 396-638 (695)
348 2zwa_A Leucine carboxyl methyl 94.0 1.5 5E-05 44.7 16.0 150 423-578 451-638 (695)
349 4hvt_A Ritya.17583.B, post-pro 92.9 9 0.00031 38.9 24.7 94 432-532 318-429 (711)
350 3b7f_A Glycosyl hydrolase, BNR 91.5 8.8 0.0003 35.7 28.1 136 414-553 233-391 (394)
351 3sbq_A Nitrous-oxide reductase 91.4 11 0.00037 36.4 24.9 81 495-576 315-409 (638)
352 3qhy_B Beta-lactamase inhibito 90.9 7.8 0.00027 34.0 23.0 67 249-326 24-90 (282)
353 4gq2_M Nucleoporin NUP120; bet 88.4 10 0.00034 40.2 15.4 33 118-150 244-276 (950)
354 3b7f_A Glycosyl hydrolase, BNR 84.9 24 0.00083 32.6 28.3 156 163-321 177-367 (394)
355 4fhn_B Nucleoporin NUP120; pro 83.8 22 0.00077 38.6 15.6 36 546-581 239-274 (1139)
356 4hvt_A Ritya.17583.B, post-pro 83.1 42 0.0014 34.0 21.1 224 37-276 136-427 (711)
357 3q6k_A 43.2 kDa salivary prote 81.3 33 0.0011 31.5 19.3 141 131-278 123-305 (381)
358 2wg3_C Hedgehog-interacting pr 81.0 39 0.0013 32.1 28.5 112 205-317 14-160 (463)
359 2wg3_C Hedgehog-interacting pr 80.8 39 0.0013 32.1 28.0 28 249-276 14-42 (463)
360 4gq2_M Nucleoporin NUP120; bet 80.2 29 0.001 36.7 14.5 39 163-201 236-274 (950)
361 4fhn_B Nucleoporin NUP120; pro 76.0 8.5 0.00029 41.8 9.2 33 118-150 246-278 (1139)
362 3f7f_A Nucleoporin NUP120; nuc 74.7 4.6 0.00016 40.3 6.1 37 113-149 223-259 (729)
363 1wp5_A Topoisomerase IV; broke 74.1 49 0.0017 29.6 24.9 150 424-574 106-276 (323)
364 3no0_A DNA gyrase subunit A; D 73.8 44 0.0015 29.0 21.4 158 413-575 68-246 (276)
365 3f7f_A Nucleoporin NUP120; nuc 73.0 9.7 0.00033 38.1 7.8 33 547-581 224-256 (729)
366 3uc1_A DNA gyrase subunit A; D 72.4 54 0.0018 29.3 22.5 159 413-574 95-278 (327)
367 3no0_A DNA gyrase subunit A; D 70.1 54 0.0019 28.4 23.0 160 161-326 66-246 (276)
368 1suu_A DNA gyrase subunit A; t 68.7 63 0.0022 28.7 23.9 197 375-575 8-231 (312)
369 3zwu_A Alkaline phosphatase PH 67.5 16 0.00053 36.0 7.9 59 504-562 477-548 (592)
370 4a9v_A PHOX; hydrolase, beta-p 66.2 23 0.00079 34.4 8.6 60 503-562 476-548 (592)
371 3mvd_K Regulator of chromosome 64.5 92 0.0032 29.0 30.3 243 74-326 75-374 (423)
372 1sqj_A OXG-RCBH, oligoxylogluc 64.1 1.4E+02 0.0047 30.8 23.9 248 204-528 14-328 (789)
373 3kci_A Probable E3 ubiquitin-p 64.0 90 0.0031 28.7 27.3 268 43-326 10-345 (389)
374 3kci_A Probable E3 ubiquitin-p 60.9 1E+02 0.0035 28.3 25.8 222 42-276 61-342 (389)
375 3q6k_A 43.2 kDa salivary prote 59.4 1.1E+02 0.0037 28.1 20.6 176 386-563 124-342 (381)
376 1zi0_A DNA gyrase subunit A; b 58.5 98 0.0033 27.3 27.4 149 423-574 108-276 (307)
377 1zi0_A DNA gyrase subunit A; b 56.8 1E+02 0.0036 27.1 30.8 151 172-326 1-176 (307)
378 1suu_A DNA gyrase subunit A; t 54.7 1.1E+02 0.0039 27.0 29.1 111 423-534 113-232 (312)
379 4a9v_A PHOX; hydrolase, beta-p 50.6 63 0.0021 31.5 8.6 60 460-521 476-549 (592)
380 3zwu_A Alkaline phosphatase PH 50.4 30 0.001 34.0 6.6 60 206-266 477-548 (592)
381 2zux_A YESW protein; beta-prop 50.2 1.9E+02 0.0064 28.1 17.0 193 382-579 148-404 (591)
382 3mvd_K Regulator of chromosome 46.3 1.8E+02 0.0063 26.9 27.1 105 35-140 77-207 (423)
383 3mez_B Mannose-specific lectin 46.1 80 0.0027 22.7 9.5 26 463-490 59-84 (113)
384 3l6v_A GYRA, DNA gyrase subuni 40.7 2.1E+02 0.0073 26.0 30.9 153 170-326 3-180 (370)
385 4d9s_A UVB-resistance protein 38.1 2.4E+02 0.0083 26.0 35.9 267 42-326 24-357 (406)
386 3elq_A Arylsulfate sulfotransf 35.8 3.2E+02 0.011 26.7 12.3 119 82-204 217-395 (571)
387 1a12_A RCC1, regulator of chro 31.9 3.1E+02 0.011 25.3 22.6 214 42-275 67-361 (413)
388 3al9_A Plexin-A2; beta-propell 30.0 1.9E+02 0.0064 28.1 8.5 67 504-570 401-476 (539)
389 1zvt_A Topoisomerase IV subuni 29.9 2.6E+02 0.0088 23.8 17.0 144 426-575 4-163 (256)
390 3uc1_A DNA gyrase subunit A; D 27.3 3.3E+02 0.011 24.2 29.4 148 174-325 3-175 (327)
391 3al9_A Plexin-A2; beta-propell 24.5 92 0.0032 30.2 5.3 69 414-485 401-476 (539)
392 1q47_A Semaphorin 3A; beta pro 24.4 2.1E+02 0.0071 27.4 7.6 67 504-570 405-487 (495)
393 1q47_A Semaphorin 3A; beta pro 22.3 1.7E+02 0.0058 28.0 6.6 69 414-485 405-487 (495)
394 1wp5_A Topoisomerase IV; broke 21.5 4.3E+02 0.015 23.4 29.6 151 172-326 3-174 (323)
395 3mez_B Mannose-specific lectin 21.3 2.3E+02 0.0078 20.2 10.1 62 120-193 23-84 (113)
396 3nvq_A Semaphorin-7A; beta-pro 20.4 3.3E+02 0.011 26.7 8.1 56 516-571 382-445 (590)
397 3elq_A Arylsulfate sulfotransf 20.2 6.1E+02 0.021 24.7 25.6 35 207-243 357-391 (571)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.9e-68 Score=538.90 Aligned_cols=498 Identities=14% Similarity=0.174 Sum_probs=397.4
Q ss_pred eecCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eC-eEEEEEcCCeEEEEecc---c
Q psy14906 28 VSNHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DF-FHIYTSANNIIYAWRRG---I 101 (583)
Q Consensus 28 ~~~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~-~~~~~~~~~~i~vw~~~---~ 101 (583)
.....+..+.|+|+++. ++++.++.|++||+++++....+.+|...|++++| |+ .+++++.|++|+|||.. .
T Consensus 16 ~~~g~~~~~~~spdg~~--l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDK--IQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCTTCCCCCEECTTSSE--EEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred cccCceeEEeeCCCCCE--EEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 34667788999998876 66667899999999999999999999999999998 45 46677799999999973 3
Q ss_pred eeeeeecccCccEEEE--ccCCCEEEEEeCC----CcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCC
Q psy14906 102 DIVGTYKGHTSPVHLI--LPFGPHLISVDEE----SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVD 175 (583)
Q Consensus 102 ~~~~~~~~h~~~v~~i--s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 175 (583)
.....+.+|.++|.++ +|+|++|++++.+ +.|++|| .++....+. +|...|.+++|+|++.
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~-----------gh~~~v~~v~f~p~~~ 160 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLT-----------GQARAMNSVDFKPSRP 160 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCC-----------CCSSCEEEEEECSSSS
T ss_pred eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceec-----------CCCCCceEEEECCCCC
Confidence 4556788999999997 9999999998865 3677776 555555665 9999999999999987
Q ss_pred -EEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhh------ccc
Q psy14906 176 -IIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKK------AHR 248 (583)
Q Consensus 176 -~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------~~~ 248 (583)
.|++|+.|++|++||..+++.+..+.+|...|.+++|+|+++ +|++++.|++|++||+.+++....+.. +|.
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 699999999999999999999999999999999999999999 999999999999999998887766622 799
Q ss_pred cceEEEEEecCCCEEEEEeCCCeEEEEEccCCCC---------------------------------------CceeeEE
Q psy14906 249 KVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADG---------------------------------------NGRLLRI 289 (583)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~---------------------------------------~~~~~~~ 289 (583)
+.|.+++|+|++++|++++.|++|++||+..... .......
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~ 319 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV 319 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence 9999999999999999999999999998753110 0123345
Q ss_pred eccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecc
Q psy14906 290 REGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLA 369 (583)
Q Consensus 290 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (583)
+.+|...|.+++|+| ++++|++++.|++|++||+.++.....+.. .+...+..+.+..
T Consensus 320 ~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~--------------------~h~~~v~~~~~s~- 377 (611)
T 1nr0_A 320 RYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPD--------------------VHATMITGIKTTS- 377 (611)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSC--------------------SCSSCEEEEEECT-
T ss_pred EcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeccc--------------------CCcceEEEEEECC-
Confidence 678999999999998 899999999999999999988765443211 0111222222221
Q ss_pred cccccccEEEEecCCceEEEeecCcccccce----------e----eecc-------------------cccccCCCCce
Q psy14906 370 REKDWNNIAAIHTGKNKVSLWSFYKSKMDDM----------F----LVPE-------------------RCKQAKQSKPT 416 (583)
Q Consensus 370 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~----~~~~-------------------~~~~~~~~~i~ 416 (583)
+..+++...++.+++|+......... . ..+. .....+...+.
T Consensus 378 -----~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 452 (611)
T 1nr0_A 378 -----KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSS 452 (611)
T ss_dssp -----TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEE
T ss_pred -----CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCce
Confidence 23455666677777777654321100 0 0000 00001235688
Q ss_pred EEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCce
Q psy14906 417 CVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPL 496 (583)
Q Consensus 417 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 496 (583)
+++|+|||++|++|+.|+.|++||+.++....... .+|...|++++|+|++++|++++.|++|++|++.+.. ++.
T Consensus 453 ~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~----~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~-~~~ 527 (611)
T 1nr0_A 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT----IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-ELA 527 (611)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE----EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-EES
T ss_pred EEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec----cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC-cee
Confidence 99999999999999999999999998765321111 3799999999999999999999999999999998731 333
Q ss_pred EE--ee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccc-eE-Eeeccc-ccceeeEEecCCCcEEEEEeCCCeEEE
Q psy14906 497 RS--IK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCT-II-RKLSGH-MGQLTDADFSPDSRWLITASMDCTIRV 570 (583)
Q Consensus 497 ~~--~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~-~~~~~h-~~~v~~l~~s~d~~~l~s~~~d~~i~v 570 (583)
.. .. |...|.+++|+|||++||+|+.|++|++||+++++ .+ ..+.+| ...|.+++|+||++ |++++.|++|++
T Consensus 528 ~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~l 606 (611)
T 1nr0_A 528 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKF 606 (611)
T ss_dssp CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred eeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEE
Confidence 32 33 67899999999999999999999999999998865 33 577889 89999999999998 999999999999
Q ss_pred EeCC
Q psy14906 571 WDIP 574 (583)
Q Consensus 571 w~~~ 574 (583)
|++.
T Consensus 607 W~~~ 610 (611)
T 1nr0_A 607 WNVP 610 (611)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9974
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-64 Score=512.07 Aligned_cols=496 Identities=22% Similarity=0.304 Sum_probs=411.3
Q ss_pred ecCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eC-eEEEEEcCCeEEEEeccceeee
Q psy14906 29 SNHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DF-FHIYTSANNIIYAWRRGIDIVG 105 (583)
Q Consensus 29 ~~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~-~~~~~~~~~~i~vw~~~~~~~~ 105 (583)
++....+++|+||++. +++++.|+.|+|||. ++++++.+.+|...|++++| |+ .+++++.|++|++||.+++.+.
T Consensus 15 H~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~ 92 (577)
T 2ymu_A 15 HSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 92 (577)
T ss_dssp CSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred CCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEE
Confidence 3556688999999875 455568899999995 67888999999999999998 44 4667789999999999999999
Q ss_pred eecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEe---------eccCCce--------------------
Q psy14906 106 TYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLEL---------SFDNDTF-------------------- 154 (583)
Q Consensus 106 ~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~-------------------- 154 (583)
.+.+|..+|.++ +|++++|++++.|+.+++|+.......... .+.+...
T Consensus 93 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (577)
T 2ymu_A 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 172 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceee
Confidence 999999999987 999999999999999999997654322111 1111100
Q ss_pred EEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q psy14906 155 KIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL 234 (583)
Q Consensus 155 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 234 (583)
......+...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||.
T Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~i~~w~~ 250 (577)
T 2ymu_A 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR 250 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECT
T ss_pred eeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeC
Confidence 0001467889999999999999999999999999996 5788889999999999999999999 8999999999999996
Q ss_pred CCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee
Q psy14906 235 EDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA 314 (583)
Q Consensus 235 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 314 (583)
. ++.+..+ .+|...|.+++|+|+++.|++++.|+.+++|+. ..+.+..+.+|...|.+++|+| +++++++++
T Consensus 251 ~-~~~~~~~-~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-----~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~ 322 (577)
T 2ymu_A 251 N-GQLLQTL-TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSP-DGQTIASAS 322 (577)
T ss_dssp T-SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-----TSCEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred C-CCEEEEE-ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-----CCcEEEEEecCCCCeEEEEECC-CCCEEEEEe
Confidence 5 5667777 789999999999999999999999999999965 4567788899999999999997 899999999
Q ss_pred CCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCc
Q psy14906 315 GDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYK 394 (583)
Q Consensus 315 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 394 (583)
.|+.|++||.......... .....+..+.+.. ....++++..++.+++|+...
T Consensus 323 ~d~~i~~w~~~~~~~~~~~----------------------~~~~~v~~~~~s~-----~g~~l~~~~~dg~v~~~~~~~ 375 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQTLT----------------------GHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNRNG 375 (577)
T ss_dssp TTSCEEEEETTSCEEEEEC----------------------CCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTC
T ss_pred CCCeEEEEeCCCCeeEEEe----------------------CCCCCEEEEEECC-----CCCEEEEEeCCCEEEEEcCCC
Confidence 9999999998654322111 0112223333322 246788889999999999654
Q ss_pred ccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEE
Q psy14906 395 SKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIV 474 (583)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 474 (583)
.... ....+...+.+++|+|++++|++++.|+.|++||. +++....+ .+|...|++++|+|++++|
T Consensus 376 ~~~~--------~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~-----~~~~~~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 376 QLLQ--------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-----TGHSSSVWGVAFSPDDQTI 441 (577)
T ss_dssp CEEE--------EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEE-----ECCSSCEEEEEECTTSSEE
T ss_pred CEEE--------EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe-----cCCCCCeEEEEECCCCCEE
Confidence 3221 12234578999999999999999999999999995 56666666 6899999999999999999
Q ss_pred EEeecCCcEEEEEccCCCCCceEEe-eccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEec
Q psy14906 475 ISGGNDQTVKVWHFKQTGKPPLRSI-KLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFS 553 (583)
Q Consensus 475 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s 553 (583)
++++.|+.|++||... +.+..+ .+...|.+++|+|++++||+++.|+.|++||. +++++..+.+|...|++++|+
T Consensus 442 ~~~~~d~~v~~w~~~~---~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s 517 (577)
T 2ymu_A 442 ASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 517 (577)
T ss_dssp EEEETTSEEEEEETTS---CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred EEEcCCCEEEEEECCC---CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEc
Confidence 9999999999999754 444444 45679999999999999999999999999995 688899999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccc
Q psy14906 554 PDSRWLITASMDCTIRVWDIPSSQLIDCF 582 (583)
Q Consensus 554 ~d~~~l~s~~~d~~i~vw~~~~~~~~~~~ 582 (583)
||+++||+++.|+.|++||. ++++++++
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~-~~~~~~~~ 545 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNR-NGQLLQTL 545 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TSCEEEEE
T ss_pred CCCCEEEEEECcCEEEEEeC-CCCEEEEE
Confidence 99999999999999999996 67777654
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-63 Score=505.00 Aligned_cols=455 Identities=16% Similarity=0.218 Sum_probs=370.3
Q ss_pred CCCCeEEEEe--eCeEEEEEcCCeEEEEecc-ceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCc--EE
Q psy14906 72 HEDDITCLSS--DFFHIYTSANNIIYAWRRG-IDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEE--TY 144 (583)
Q Consensus 72 h~~~v~~~~~--~~~~~~~~~~~~i~vw~~~-~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~--~~ 144 (583)
+.+.+.+++| ||++++.+.++.|++|++. ++....+.+|...|+++ +|+|++||+|+.|++|+|||+.+++ ..
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred ccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 5666777777 6667766678899999974 67788999999999987 9999999999999999999997654 34
Q ss_pred EEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC----CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEE
Q psy14906 145 LELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN----KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMM 220 (583)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 220 (583)
..+. .|.+.|.+++|+|++++|++++.+ +.|++|| +++....+.+|...|++++|+|+++..|
T Consensus 97 ~~~~-----------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 97 TTIP-----------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp EEEE-----------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred Eeec-----------ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEE
Confidence 4555 889999999999999999998765 3677776 5777788899999999999999998679
Q ss_pred EEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEec-------cC
Q psy14906 221 VSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIRE-------GH 293 (583)
Q Consensus 221 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~-------~~ 293 (583)
++++.|++|++||..++++...+ .+|...|.+++|+|++++|++++.|++|++|++. .++.+..+. +|
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp EEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSS
T ss_pred EEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECC----CCcEeeeecccccccccc
Confidence 99999999999999999888888 8999999999999999999999999999999764 345556663 79
Q ss_pred CCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccc
Q psy14906 294 SAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKD 373 (583)
Q Consensus 294 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (583)
...|.+++|+| ++++|++++.|++|++||+.+++....+....... ........
T Consensus 239 ~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~------------------~~~~~~~~------- 292 (611)
T 1nr0_A 239 SGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE------------------DQQLGIIW------- 292 (611)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG------------------GCEEEEEE-------
T ss_pred CCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc------------------ceeEEEEE-------
Confidence 99999999998 89999999999999999999887766553211000 00001111
Q ss_pred cccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCC
Q psy14906 374 WNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHD 453 (583)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 453 (583)
....+++...++.+++|+....... .....|...|.+++|+|+|++|++++.|+.|++||+.+++....+...
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~-------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~ 365 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSID-------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 365 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEE-------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCS
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcc-------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccC
Confidence 2456778888999999998764321 122345688999999999999999999999999999876543322000
Q ss_pred -------------------------------------------CC----------------------------------C
Q psy14906 454 -------------------------------------------NQ----------------------------------P 456 (583)
Q Consensus 454 -------------------------------------------~~----------------------------------~ 456 (583)
.+ .
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 00 0
Q ss_pred CcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccc-cc
Q psy14906 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT-CT 535 (583)
Q Consensus 457 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~ 535 (583)
.|...+.+++|+||+++|++++.|++|++||+............+...|.+++|+|||++||+++.|++|++||+.+ ++
T Consensus 446 ~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 446 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 12345789999999999999999999999999875211234456778999999999999999999999999999998 66
Q ss_pred eEEe--ecccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCcc
Q psy14906 536 IIRK--LSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577 (583)
Q Consensus 536 ~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~ 577 (583)
++.. +.+|...|.+++|+|||++||+++.|++|++|++++++
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 5543 34599999999999999999999999999999998865
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.1e-62 Score=493.50 Aligned_cols=474 Identities=22% Similarity=0.318 Sum_probs=395.9
Q ss_pred cCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eC-eEEEEEcCCeEEEEeccceee--
Q psy14906 30 NHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DF-FHIYTSANNIIYAWRRGIDIV-- 104 (583)
Q Consensus 30 ~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~-~~~~~~~~~~i~vw~~~~~~~-- 104 (583)
..-..+++|+|+++. +++++.|+.|++||. +++++..+.+|...|.+++| ++ .+++++.|+.+++|+......
T Consensus 57 ~~~V~~l~fspdg~~-las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~ 134 (577)
T 2ymu_A 57 SSSVWGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 134 (577)
T ss_dssp SSCEEEEEECTTSSE-EEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEE
T ss_pred CCCEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeee
Confidence 344578899998764 556668999999995 56788889999999999998 44 567778999999998533222
Q ss_pred ---------------------------------------eeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcE
Q psy14906 105 ---------------------------------------GTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEET 143 (583)
Q Consensus 105 ---------------------------------------~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~ 143 (583)
.....|...|.++ +|++++|++++.|+.|++||. +++.
T Consensus 135 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~ 213 (577)
T 2ymu_A 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQL 213 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCE
T ss_pred ccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcE
Confidence 2233566667665 889999999999999999995 5677
Q ss_pred EEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEE
Q psy14906 144 YLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSG 223 (583)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 223 (583)
+..+. .|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|+++ .++++
T Consensus 214 ~~~~~-----------~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~-~l~~~ 280 (577)
T 2ymu_A 214 LQTLT-----------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQ-TIASA 280 (577)
T ss_dssp EEEEE-----------CCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred EEEEe-----------cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCC-EEEEE
Confidence 77777 89999999999999999999999999999996 4788889999999999999999999 89999
Q ss_pred cCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEe
Q psy14906 224 SNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFY 303 (583)
Q Consensus 224 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 303 (583)
+.|+.|++||.. ++....+ .+|...|.+++|+|++++|++++.|+.+++|+++ ...+..+.+|...+.+++|+
T Consensus 281 ~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-----~~~~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 281 SDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----GQHLQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp ETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----SCEEEEECCCSSCEEEEEEC
T ss_pred eCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-----CCeeEEEeCCCCCEEEEEEC
Confidence 999999999975 5666667 7899999999999999999999999999999763 45567788999999999999
Q ss_pred eCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecC
Q psy14906 304 GNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTG 383 (583)
Q Consensus 304 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (583)
| ++++|++++.|+.+++||.. ++....+. .+...+..+.++. ....++++..
T Consensus 354 ~-~g~~l~~~~~dg~v~~~~~~-~~~~~~~~---------------------~~~~~v~~~~~s~-----dg~~l~~~~~ 405 (577)
T 2ymu_A 354 P-DGQTIASASDDKTVKLWNRN-GQLLQTLT---------------------GHSSSVRGVAFSP-----DGQTIASASD 405 (577)
T ss_dssp T-TSSEEEEEETTSEEEEEETT-CCEEEEEE---------------------CCSSCEEEEEECT-----TSSCEEEEET
T ss_pred C-CCCEEEEEeCCCEEEEEcCC-CCEEEEec---------------------CCCCCeEEEEECC-----CCCEEEEEeC
Confidence 7 89999999999999999964 33333221 1122333333332 2456788889
Q ss_pred CceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCee
Q psy14906 384 KNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVR 463 (583)
Q Consensus 384 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~ 463 (583)
++.+++|+....... ....+...+++++|+|++++|++++.|+.|++||. +++....+ .+|...|+
T Consensus 406 d~~v~~~~~~~~~~~--------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~-----~~~~~~v~ 471 (577)
T 2ymu_A 406 DKTVKLWNRNGQLLQ--------TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTL-----TGHSSSVR 471 (577)
T ss_dssp TSEEEEECTTCCEEE--------EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEE-----ECCSSCEE
T ss_pred CCEEEEEeCCCCEEE--------EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEE-----cCCCCCEE
Confidence 999999996543221 12234578999999999999999999999999996 45666666 68999999
Q ss_pred EEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecc
Q psy14906 464 GVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSG 542 (583)
Q Consensus 464 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 542 (583)
+++|+|++++|++++.|+.|++||.. + +++..+. +...|++++|+|+|++||+++.|+.|++||. +++++..+.+
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~~-~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~ 547 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 547 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETT-S--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcCC-C--CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC
Confidence 99999999999999999999999964 3 5666655 4578999999999999999999999999996 6888999999
Q ss_pred cccceeeEEecCCCcEEEEEeCCCeEEEEe
Q psy14906 543 HMGQLTDADFSPDSRWLITASMDCTIRVWD 572 (583)
Q Consensus 543 h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~ 572 (583)
|.+.|++++|+||+++|+|++.|++|++||
T Consensus 548 h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999997
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-59 Score=480.33 Aligned_cols=509 Identities=11% Similarity=0.102 Sum_probs=408.9
Q ss_pred ecCcccEEEEEeCCCceEEEEeeCCeEEEEecCCc----EEEeecCCCCCC-eEEEEeeC-----eEEEEEcCCeEEEEe
Q psy14906 29 SNHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHF----KLLSVSPQHEDD-ITCLSSDF-----FHIYTSANNIIYAWR 98 (583)
Q Consensus 29 ~~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~----~~~~~~~~h~~~-v~~~~~~~-----~~~~~~~~~~i~vw~ 98 (583)
....+.+++|+|+++. ++++.++.|++||++++ +.+..+.+|... |+++++++ .+++++.|+.|++||
T Consensus 17 ~~~~v~~~~~spdg~~--l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNA--IAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CTTCCCCCEEETTTTE--EEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred ccCceeEEEECCCCCE--EEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 4566788999999876 55556999999999999 889999999999 99999854 366677899999999
Q ss_pred cc---------ceeeeeecccCccEEEE--ccCCCEEEEEeCC----CcEEEEEcCCCcEEEEeeccCCceEEecccCCc
Q psy14906 99 RG---------IDIVGTYKGHTSPVHLI--LPFGPHLISVDEE----SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNS 163 (583)
Q Consensus 99 ~~---------~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (583)
+. .+....+.+|..+|.++ +|++++|++++.+ +.|++|| .++.+..+. .|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-----------~~~~ 161 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-----------GHSQ 161 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC-----------SCSS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee-----------cCCc
Confidence 83 46778889999999997 9999999999987 6788887 667777776 8999
Q ss_pred ceEEEeeCCCCC-EEEEEecCCeEEEEEccCCceeEEEeccCC---CeEEEEEecC-CCCEEEEEcCCCcEEEEeCCCCe
Q psy14906 164 CVNVLEPSPVVD-IIGVGLSNKKIILHNILTDESLMEFIQTWG---PVTALSFRTD-GPPMMVSGSNTGHLTVWNLEDRQ 238 (583)
Q Consensus 164 ~i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 238 (583)
.|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ ++ +|++++.||.|++||+.+++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCC
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCC
Confidence 999999999998 899999999999999999999999999988 9999999999 88 89999999999999999998
Q ss_pred ehhhhhh---ccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccC----CCCCeeEEEeeCCCCEEE
Q psy14906 239 VENQIKK---AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGH----SAPPNYIQFYGNSSDNIL 311 (583)
Q Consensus 239 ~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~ 311 (583)
.+..+.. .|...|.+++|+ ++++|++++.|+.|++|++. ..+.+..+..+ ...+.++.|. ++.+++
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 313 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT----TSKCVQKWTLDKQQLGNQQVGVVAT--GNGRII 313 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT----TTEEEEEEECCTTCGGGCEEEEEEE--ETTEEE
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC----CCcEEEEEcCCCCcccCceeEEEeC--CCCeEE
Confidence 8887734 799999999999 99999999999999999775 45666666665 3567778875 788999
Q ss_pred EeeCCCcEEEEEccccccceeeccchhhh-hhhh---hhcchhcccc--------ccCCCccceeeeecccccccccEEE
Q psy14906 312 SAAGDSTLRIFNTKSETSNKNLGIASANR-NNLK---RKNRLEKMNE--------KFILPPVSQFSFGLAREKDWNNIAA 379 (583)
Q Consensus 312 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (583)
+++.||.|++||+.+++....+....... .... ..+....... ..+...+..+.+ .....++
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~------~~~~~l~ 387 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN------SKAQEYS 387 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC------CSTTCCE
T ss_pred EEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE------CCCcEEE
Confidence 99999999999999877665552211000 0000 0000000000 111112222222 1245677
Q ss_pred EecCCceEEEeecCcccccce----------------------eee----cccccccCCCCceEEEEccCCcEEEEEec-
Q psy14906 380 IHTGKNKVSLWSFYKSKMDDM----------------------FLV----PERCKQAKQSKPTCVYITHCGNFVLIGYS- 432 (583)
Q Consensus 380 ~~~~~~~i~~~~~~~~~~~~~----------------------~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~- 432 (583)
++..++.+++|+......... ... .......+...+.+++++ ++++++++.
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 465 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEE 465 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETT
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecC
Confidence 788888999998765432000 000 000000134678899999 889999999
Q ss_pred CceEEEEEcccCccc-cccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEee--ccCCeeeEE
Q psy14906 433 SGHVDRFNIQSGAHR-GSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK--LDNGISFFR 509 (583)
Q Consensus 433 dg~i~i~d~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~ 509 (583)
+|.|++||+.+++.. ..+ ..|...|++++|+|++++|++++.||.|++||+.++ +++..+. +...|++++
T Consensus 466 d~~i~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~h~~~v~~~~ 538 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSFDLK-----TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--EVKTSRWAFRTSKINAIS 538 (615)
T ss_dssp TSCEEEEETTEEEEEEECS-----SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEECCSCCCSSCEEEEE
T ss_pred CCeEEEEECCCcccccccc-----CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC--cceeEeecCCCCceeEEE
Confidence 999999999987665 344 689999999999999999999999999999999988 7777665 668999999
Q ss_pred ecc----------CCcEEEEEeCCceEEEEEcccc-ceEEeecccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCc
Q psy14906 510 THQ----------ESSMLAVCLDDFTVNIIDIDTC-TIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 510 ~s~----------~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~ 576 (583)
|+| ++++||+++.||.|++||++++ +++..+.+|...|++++|+||++ |++++.|+.|++|+++++
T Consensus 539 ~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 539 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred EcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 999 9999999999999999999998 78889999999999999999999 999999999999999753
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.6e-59 Score=515.25 Aligned_cols=486 Identities=16% Similarity=0.204 Sum_probs=415.3
Q ss_pred cCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eC-eEEEEEcCCeEEEEec-cceeee
Q psy14906 30 NHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DF-FHIYTSANNIIYAWRR-GIDIVG 105 (583)
Q Consensus 30 ~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~-~~~~~~~~~~i~vw~~-~~~~~~ 105 (583)
.....+++|+|+++. +++++.|+.|++||+.+++.+..+.+|...|.+++| ++ .+++++.|+.|++||. .++.+.
T Consensus 615 ~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~ 693 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH 693 (1249)
T ss_dssp SSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred cccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 455678899988765 455678999999999999999999999999999999 44 5777789999999996 568889
Q ss_pred eecccCccEEEE--cc--CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe
Q psy14906 106 TYKGHTSPVHLI--LP--FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL 181 (583)
Q Consensus 106 ~~~~h~~~v~~i--s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 181 (583)
.+.+|...|.++ +| ++.++++++.|+.|++||+.+++++..+. +|...|.+++|+|++++|++++
T Consensus 694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-----------~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-----------GHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-----------CCSSCEEEEEECSSTTEEEEEE
T ss_pred EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-----------CCCCCEEEEEEecCCCEEEEEE
Confidence 999999999997 67 55689999999999999999999999887 9999999999999999999999
Q ss_pred cCCeEEEEEccCCceeEEEe-------------------------------------------------------ccCCC
Q psy14906 182 SNKKIILHNILTDESLMEFI-------------------------------------------------------QTWGP 206 (583)
Q Consensus 182 ~d~~i~iw~~~~~~~~~~~~-------------------------------------------------------~~~~~ 206 (583)
.||.|++||+.+++....+. +|...
T Consensus 763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 842 (1249)
T 3sfz_A 763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST 842 (1249)
T ss_dssp SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSC
T ss_pred CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCc
Confidence 99999999998775543321 56788
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCC------
Q psy14906 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKA------ 280 (583)
Q Consensus 207 v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~------ 280 (583)
|.+++|+|+++ ++++++.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.+++|++...
T Consensus 843 v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 843 IQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp CCEEEECSSTT-EEEEECSSSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeeec-CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 99999999999 9999999999999999999999888 799999999999999999999999999999985310
Q ss_pred ---------------------------------------------------------------------CCCceeeEEec
Q psy14906 281 ---------------------------------------------------------------------DGNGRLLRIRE 291 (583)
Q Consensus 281 ---------------------------------------------------------------------~~~~~~~~~~~ 291 (583)
.........+.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 00123345566
Q ss_pred cCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccc
Q psy14906 292 GHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLARE 371 (583)
Q Consensus 292 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (583)
+|...|.+++|+| ++++|++++.||.|++||+.++....... ....+..+.+..
T Consensus 1001 ~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~----------------------~~~~v~~~~~~~--- 1054 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVFLQA----------------------HQETVKDFRLLQ--- 1054 (1249)
T ss_dssp CCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEECCBC----------------------CSSCEEEEEECS---
T ss_pred cCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceEEEec----------------------CCCcEEEEEEcC---
Confidence 7999999999997 89999999999999999998876543221 112223333322
Q ss_pred cccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccC
Q psy14906 372 KDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYG 451 (583)
Q Consensus 372 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 451 (583)
+..+++...++.+++||.......... ..+...+.+++|+|+++++++++.||.|++||+.+++....+
T Consensus 1055 ---~~~l~~~~~dg~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l- 1123 (1249)
T 3sfz_A 1055 ---DSRLLSWSFDGTVKVWNVITGRIERDF-------TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL- 1123 (1249)
T ss_dssp ---SSEEEEEESSSEEEEEETTTTCCCEEE-------ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-
T ss_pred ---CCcEEEEECCCcEEEEECCCCceeEEE-------cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-
Confidence 345778888999999999876543222 234478999999999999999999999999999999988887
Q ss_pred CCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEe----------eccCCeeeEEeccCCcEEEEEe
Q psy14906 452 HDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSI----------KLDNGISFFRTHQESSMLAVCL 521 (583)
Q Consensus 452 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~ 521 (583)
.+|...|++++|+|++++|++++.||.|++||+.++ +.+..+ .+...|++++|+|||++|++++
T Consensus 1124 ----~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1124 ----KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG--QLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp ----CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS--CCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred ----ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 799999999999999999999999999999999987 554433 3567899999999999999885
Q ss_pred CCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeEEEEeCC
Q psy14906 522 DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 522 ~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
|.|++||+.+++.+..+.+|...|.+++|+||+++|++++.||.|++|++.
T Consensus 1198 --g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1198 --GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp --SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred --CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 899999999999999999999999999999999999999999999999974
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-55 Score=460.66 Aligned_cols=550 Identities=13% Similarity=0.120 Sum_probs=391.1
Q ss_pred cccceeeeeeeeeeecCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEee-C-eEEEEEcCC
Q psy14906 15 SSKIFLRHRALGYVSNHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSD-F-FHIYTSANN 92 (583)
Q Consensus 15 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~~-~-~~~~~~~~~ 92 (583)
.+..|.++...-+-......+++|+|+++. +++++.|+.|++||..+.+....+. |...|.+++|. + .+++++.|+
T Consensus 2 ~~~~~~~~~~~~~gh~~~V~~lafspdg~~-lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~ 79 (902)
T 2oaj_A 2 KNKIFSLAETNKYGMSSKPIAAAFDFTQNL-LAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKD 79 (902)
T ss_dssp CCTTEEEEEEEEEECSSCEEEEEEETTTTE-EEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTC
T ss_pred chheeeeccccccCCCCCcEEEEECCCCCE-EEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcC
Confidence 456777766655445677889999998754 5556689999999999888877654 88899999985 3 488889999
Q ss_pred eEEEEecc-ceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceE-EecccCCcceEEE
Q psy14906 93 IIYAWRRG-IDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFK-IMGKRWNSCVNVL 168 (583)
Q Consensus 93 ~i~vw~~~-~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 168 (583)
+|++||+. ++.+..+. |.+.|+++ +|++++|++|+.||+|++||+.+++.. .+........ ....+|.+.|.++
T Consensus 80 ~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 80 TVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp EEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEE
T ss_pred eEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEE
Confidence 99999974 56666775 77889987 999999999999999999999988763 2211000000 0002788999999
Q ss_pred eeCCC-CCEEEEEecCCeEEEEEccCCceeEEEecc------------------CCCeEEEEEecCCCCEEEEEcCCCcE
Q psy14906 169 EPSPV-VDIIGVGLSNKKIILHNILTDESLMEFIQT------------------WGPVTALSFRTDGPPMMVSGSNTGHL 229 (583)
Q Consensus 169 ~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~l~s~~~dg~i 229 (583)
+|+|+ +..|++|+.|+.| +||+++++.+..+..| ...|++++|+|+|+ +|++++.||.|
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i 235 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSL 235 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCE
T ss_pred EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeE
Confidence 99996 5789999999999 9999999998888765 47799999999999 99999999999
Q ss_pred EEEeCCCCeehhh--hh--h-------------ccccceEEEEEec----CC-CEEEEEeCC-----CeEEEEEccCCC-
Q psy14906 230 TVWNLEDRQVENQ--IK--K-------------AHRKVVTGAHFLY----NE-PLLVTSSPD-----NTLKLWIFDKAD- 281 (583)
Q Consensus 230 ~vwd~~~~~~~~~--~~--~-------------~~~~~v~~~~~~~----~~-~~l~s~~~d-----~~i~~w~~~~~~- 281 (583)
++||+++++++.. +. . .|...|.+++|++ ++ .+|++|+.+ ..+.+|++....
T Consensus 236 ~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~ 315 (902)
T 2oaj_A 236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR 315 (902)
T ss_dssp EEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC
T ss_pred EEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC
Confidence 9999998876542 20 1 1355799999964 33 467777665 378888642110
Q ss_pred -------------CCceeeEEec-cCCCCCeeEEEee---------CCCCEEEEeeCCCcEEEEEccccccceeec--cc
Q psy14906 282 -------------GNGRLLRIRE-GHSAPPNYIQFYG---------NSSDNILSAAGDSTLRIFNTKSETSNKNLG--IA 336 (583)
Q Consensus 282 -------------~~~~~~~~~~-~~~~~v~~~~~~~---------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~ 336 (583)
...+....+. .+...|..+.+.+ .+...+++++.||.|++||+.++....... ..
T Consensus 316 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~ 395 (902)
T 2oaj_A 316 YSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ 395 (902)
T ss_dssp GGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG
T ss_pred ccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCC
Confidence 0112233333 3567788888765 234578899999999999997664322100 00
Q ss_pred hhhhhh------hhh--hcchhc------cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccccccee-
Q psy14906 337 SANRNN------LKR--KNRLEK------MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMF- 401 (583)
Q Consensus 337 ~~~~~~------~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~- 401 (583)
...... ... ....+. ......+.......... .......+++++..|+.|++||+.........
T Consensus 396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv-~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 396 NLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK-LPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC-CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred cccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcc-cccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 000000 000 000000 00000000000000000 01123578999999999999999876432110
Q ss_pred eec---ccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcc--------------------------------
Q psy14906 402 LVP---ERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAH-------------------------------- 446 (583)
Q Consensus 402 ~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------------- 446 (583)
+.. ......|...|.+++|+||+++||+|+.||+|++||+.+++.
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 100 001125567899999999999999999999999999987632
Q ss_pred -------------ccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEE-----e--eccCCee
Q psy14906 447 -------------RGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRS-----I--KLDNGIS 506 (583)
Q Consensus 447 -------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~--~~~~~v~ 506 (583)
+..+ .+|.+.|++++|+||| +||+|+.|++|++||+++. ..+.. + .|...|+
T Consensus 555 ~~~~~~~~~g~~~~~~l-----~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~--~~~~~~~~~~~~~gh~~~V~ 626 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAV-----HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP--AIIYMENIREISGAQSACVT 626 (902)
T ss_dssp GGCCTTCSEEEEEEEEE-----CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT--EEEEEEEGGGTCSSCCCCEE
T ss_pred ccCCCCCCCccceeEEE-----EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC--eEEEEeehhHhccccccceE
Confidence 2333 6799999999999999 9999999999999998776 44421 2 3456799
Q ss_pred eEEec-----cCC---cEEEEEeCCceEEEEEc---cccceEEeecccc-----cceeeEE-ec----------------
Q psy14906 507 FFRTH-----QES---SMLAVCLDDFTVNIIDI---DTCTIIRKLSGHM-----GQLTDAD-FS---------------- 553 (583)
Q Consensus 507 ~~~~s-----~~~---~~l~~~~~dg~i~i~d~---~~~~~~~~~~~h~-----~~v~~l~-~s---------------- 553 (583)
+++|+ ||| ++|++|+.|++|++||+ .+|+....+.+|. ++|..++ |+
T Consensus 627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~ 706 (902)
T 2oaj_A 627 CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQN 706 (902)
T ss_dssp EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHG
T ss_pred EEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhc
Confidence 99999 886 89999999999999999 8888888888774 6788777 65
Q ss_pred ------CCCcEEEEEeCCCeEEEEeCCCcccccc
Q psy14906 554 ------PDSRWLITASMDCTIRVWDIPSSQLIDC 581 (583)
Q Consensus 554 ------~d~~~l~s~~~d~~i~vw~~~~~~~~~~ 581 (583)
+++..|+++ +..|+||++.++++++.
T Consensus 707 l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k 738 (902)
T 2oaj_A 707 LSKGLCIPGIVLITG--FDDIRLITLGKSKSTHK 738 (902)
T ss_dssp GGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEE
T ss_pred cCCCCCCCeEEEEEe--ccceEEEeCccccceee
Confidence 455555544 77899999999988754
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-56 Score=465.07 Aligned_cols=490 Identities=11% Similarity=0.116 Sum_probs=351.8
Q ss_pred CCCCCCeEEEEeeC---eEEEEEcCCeEEEEeccceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEE
Q psy14906 70 PQHEDDITCLSSDF---FHIYTSANNIIYAWRRGIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETY 144 (583)
Q Consensus 70 ~~h~~~v~~~~~~~---~~~~~~~~~~i~vw~~~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~ 144 (583)
.+|...|+|++|++ .+++++.|++|++|+...........|..+|.++ +| |++|++++.|++|++||+.+++++
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence 47999999999954 4667789999999997654443344588899987 88 889999999999999999999988
Q ss_pred EEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCcee-----------EEEeccCCCeEEEEEe
Q psy14906 145 LELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESL-----------MEFIQTWGPVTALSFR 213 (583)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~-----------~~~~~~~~~v~~~~~~ 213 (583)
..+. |...|++++|+|++++|++|+.||.|++||+++++.. ..+.+|.+.|.+++|+
T Consensus 93 ~~~~------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 93 TTVF------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEE------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEc------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 8873 4578999999999999999999999999999987753 2235688999999999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhcc------------------ccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy14906 214 TDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAH------------------RKVVTGAHFLYNEPLLVTSSPDNTLKLW 275 (583)
Q Consensus 214 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~s~~~d~~i~~w 275 (583)
|++..++++|+.||.| +||+++++.+..+ ..| ...|.+++|+|+|++|++++.|+.|++|
T Consensus 161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-TYSLVENEIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TTEEEEEEEECSSCEE-EEETTTTEEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred cCCCCEEEEEeCCCcE-EEECCCCceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 9754489999999999 9999998877666 333 5789999999999999999999999999
Q ss_pred EccCCCCCceeeEE--e---cc-------------CCCCCeeEEEeeC---C-CCEEEEeeCC-----CcEEEEEccccc
Q psy14906 276 IFDKADGNGRLLRI--R---EG-------------HSAPPNYIQFYGN---S-SDNILSAAGD-----STLRIFNTKSET 328 (583)
Q Consensus 276 ~~~~~~~~~~~~~~--~---~~-------------~~~~v~~~~~~~~---~-~~~l~~~~~d-----g~i~iwd~~~~~ 328 (583)
|+.. ++.+.. + .. |..+|.+++|++. + +..+++++.+ ..+.+|++....
T Consensus 239 d~~~----g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~ 314 (902)
T 2oaj_A 239 DANS----GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314 (902)
T ss_dssp ETTT----CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred ECCC----CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence 7652 333332 2 11 3457999999752 2 2567777665 378899854210
Q ss_pred cceeeccchhhhhhhh-hhcchhccccccCCCccceeeeeccc-----ccccccEEEEecCCceEEEeecCccccccee-
Q psy14906 329 SNKNLGIASANRNNLK-RKNRLEKMNEKFILPPVSQFSFGLAR-----EKDWNNIAAIHTGKNKVSLWSFYKSKMDDMF- 401 (583)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~- 401 (583)
.. ...+....... ................+..+.+.... .......+++...++.+++|++.........
T Consensus 315 ~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~ 391 (902)
T 2oaj_A 315 RY---SITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391 (902)
T ss_dssp CG---GGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred Cc---cccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence 00 00000000000 00000000000001112222221100 0011235666677899999998543211100
Q ss_pred -----------------e----------------ecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcccc
Q psy14906 402 -----------------L----------------VPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG 448 (583)
Q Consensus 402 -----------------~----------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 448 (583)
+ ........+...+.+++|+|++++|++|+.|++|++||+.++....
T Consensus 392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 0 0000112223455667889999999999999999999999885321
Q ss_pred c--cCCC----CCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCC-----------------------------
Q psy14906 449 S--YGHD----NQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGK----------------------------- 493 (583)
Q Consensus 449 ~--~~~~----~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----------------------------- 493 (583)
. +... ...+|...|++++|+||+++||+|+.||+|++||+.++..
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLV 551 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEE
T ss_pred CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccc
Confidence 0 1000 0027899999999999999999999999999999987510
Q ss_pred --------------CceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEE-----eec-ccccceeeEEe
Q psy14906 494 --------------PPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIR-----KLS-GHMGQLTDADF 552 (583)
Q Consensus 494 --------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~-~h~~~v~~l~~ 552 (583)
+++..+. +.+.|++++||||| +||+|+.|++|++||++++..+. .+. +|.+.|++++|
T Consensus 552 ~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~F 630 (902)
T 2oaj_A 552 DVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEF 630 (902)
T ss_dssp ECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEE
T ss_pred cccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEE
Confidence 1133444 56799999999999 99999999999999998877653 343 89999999999
Q ss_pred c-----CCC---cEEEEEeCCCeEEEEeC---CCccccccc
Q psy14906 553 S-----PDS---RWLITASMDCTIRVWDI---PSSQLIDCF 582 (583)
Q Consensus 553 s-----~d~---~~l~s~~~d~~i~vw~~---~~~~~~~~~ 582 (583)
+ ||| ++|++++.|++|++||+ .+|+++..|
T Consensus 631 s~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~ 671 (902)
T 2oaj_A 631 VIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQL 671 (902)
T ss_dssp EEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred EEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence 9 885 89999999999999999 788876654
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-55 Score=486.19 Aligned_cols=478 Identities=17% Similarity=0.204 Sum_probs=394.8
Q ss_pred eecCCCCCCeEEEEe--eC-eEEEEEcCCeEEEEec-cceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCC
Q psy14906 67 SVSPQHEDDITCLSS--DF-FHIYTSANNIIYAWRR-GIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKA 140 (583)
Q Consensus 67 ~~~~~h~~~v~~~~~--~~-~~~~~~~~~~i~vw~~-~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~ 140 (583)
..+.+|.+.|+++++ ++ .+++++.|++|++||. .++.+..+.+|...|.++ +|+|++|++++.||.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 456789999999999 44 5667789999999996 567888999999999997 99999999999999999999999
Q ss_pred CcEEEEeeccCCceEEecccCCcceEEEeeCC--CCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCC
Q psy14906 141 EETYLELSFDNDTFKIMGKRWNSCVNVLEPSP--VVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPP 218 (583)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 218 (583)
++.+..+. +|...|.+++|+| ++.++++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|+++
T Consensus 689 ~~~~~~~~-----------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~- 756 (1249)
T 3sfz_A 689 GKLVHTYD-----------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE- 756 (1249)
T ss_dssp CCEEEEEE-----------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-
T ss_pred CceEEEEc-----------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC-
Confidence 99999998 9999999999999 556899999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEeCCCCeehhhh------------------------------------------------------h
Q psy14906 219 MMVSGSNTGHLTVWNLEDRQVENQI------------------------------------------------------K 244 (583)
Q Consensus 219 ~l~s~~~dg~i~vwd~~~~~~~~~~------------------------------------------------------~ 244 (583)
++++++.||.|++||+.+++....+ .
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~ 836 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 836 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc
Confidence 9999999999999998766432221 1
Q ss_pred hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEc
Q psy14906 245 KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324 (583)
Q Consensus 245 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 324 (583)
.+|...|.+++|+|+++++++++.|+.|++|+++ ....+..+.+|...|.+++|+| ++..+++++.||.+++||+
T Consensus 837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT----TTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEH
T ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC----CCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEc
Confidence 2677889999999999999999999999999776 5677888999999999999997 8999999999999999998
Q ss_pred cccccceeeccchhhhhhhhhhcc----------------hhccccccCCCccceeeeecccccccccEEEEecCCceEE
Q psy14906 325 KSETSNKNLGIASANRNNLKRKNR----------------LEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVS 388 (583)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 388 (583)
.+...................... ............+....++ .....++++..++.+.
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~ 986 (1249)
T 3sfz_A 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIK 986 (1249)
T ss_dssp HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCE
T ss_pred cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEE
Confidence 764332211100000000000000 0000000011112222222 2356888899999999
Q ss_pred EeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEe
Q psy14906 389 LWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSD 468 (583)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s 468 (583)
+|+........ ....|...+.+++|+|+++++++++.||.|++||+.+++.... ..|...|.+++|+
T Consensus 987 i~d~~~~~~~~-------~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~------~~~~~~v~~~~~~ 1053 (1249)
T 3sfz_A 987 IIELPNNRVFS-------SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL------QAHQETVKDFRLL 1053 (1249)
T ss_dssp EEETTTTSCEE-------ECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC------BCCSSCEEEEEEC
T ss_pred EEEcCCCceee-------ecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE------ecCCCcEEEEEEc
Confidence 99998754322 1224557899999999999999999999999999999887643 4899999999999
Q ss_pred CCCcEEEEeecCCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccce
Q psy14906 469 NLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQL 547 (583)
Q Consensus 469 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v 547 (583)
|++. +++++.||.|++||+.++ +....+. +...|.+++|+|+++++++++.|+.|++||+.+++.+..+.+|...|
T Consensus 1054 ~~~~-l~~~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v 1130 (1249)
T 3sfz_A 1054 QDSR-LLSWSFDGTVKVWNVITG--RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1130 (1249)
T ss_dssp SSSE-EEEEESSSEEEEEETTTT--CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCE
T ss_pred CCCc-EEEEECCCcEEEEECCCC--ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcE
Confidence 9764 778899999999999998 7777766 45789999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCcEEEEEeCCCeEEEEeCCCccccccc
Q psy14906 548 TDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCF 582 (583)
Q Consensus 548 ~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~ 582 (583)
++++|+||+++|++++.||.|++||+.+++++..+
T Consensus 1131 ~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1131 RCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp EEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 99999999999999999999999999999887654
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1e-54 Score=445.33 Aligned_cols=458 Identities=12% Similarity=0.094 Sum_probs=369.3
Q ss_pred CCCCCeEEEEe--eCeEEEEEcCCeEEEEecc-c----eeeeeecccCcc-EEEE--cc--CCCEEEEEeCCCcEEEEEc
Q psy14906 71 QHEDDITCLSS--DFFHIYTSANNIIYAWRRG-I----DIVGTYKGHTSP-VHLI--LP--FGPHLISVDEESNVKVWDI 138 (583)
Q Consensus 71 ~h~~~v~~~~~--~~~~~~~~~~~~i~vw~~~-~----~~~~~~~~h~~~-v~~i--s~--~~~~l~s~~~dg~i~iwd~ 138 (583)
.|.+.|.++++ ++++++.+.++.|++||+. + +....+.+|... |+++ +| ++++|++++.||.|++||+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 58899999888 5677777779999999975 5 688899999999 9997 99 9999999999999999999
Q ss_pred CCC--------cEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC----CeEEEEEccCCceeEEEeccCCC
Q psy14906 139 KAE--------ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN----KKIILHNILTDESLMEFIQTWGP 206 (583)
Q Consensus 139 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~ 206 (583)
.++ +.+..+. .|...|.+++|+|++++|++++.+ +.|++|| +++.+..+.+|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQ-----------VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR 162 (615)
T ss_dssp EEEGGGTEEEEEEEEEEE-----------CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred CCCcccccccccccchhh-----------cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence 855 5556665 789999999999999999999987 6888888 67888999999999
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhcccc---ceEEEEEecC-CCEEEEEeCCCeEEEEEccCCCC
Q psy14906 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRK---VVTGAHFLYN-EPLLVTSSPDNTLKLWIFDKADG 282 (583)
Q Consensus 207 v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~ 282 (583)
|.+++|+|+++.++++++.|+.|++||+.+++.+..+ .+|.. .|.+++|+|+ +++|++++.|+.|++||+.
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~---- 237 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK---- 237 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC----
Confidence 9999999999878999999999999999999999888 78988 9999999999 9999999999999999765
Q ss_pred CceeeEEe-c---cCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCC
Q psy14906 283 NGRLLRIR-E---GHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFIL 358 (583)
Q Consensus 283 ~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (583)
.++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++....+....... .
T Consensus 238 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----------------~ 298 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL-----------------G 298 (615)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG-----------------G
T ss_pred CCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc-----------------c
Confidence 45667777 5 899999999998 78999999999999999999887766553221000 0
Q ss_pred CccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecc--------------------------cccccCC
Q psy14906 359 PPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPE--------------------------RCKQAKQ 412 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~ 412 (583)
.......+. ....++++..++.+++|+.............. .....+.
T Consensus 299 ~~~~~~~~~------~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 299 NQQVGVVAT------GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp GCEEEEEEE------ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred CceeEEEeC------CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence 000111110 24455666666666666665432211100000 0003345
Q ss_pred CCceEEEEccCCcEEEEEecCceEEEEEcccCc----------------------------------cccccCCCCCCCc
Q psy14906 413 SKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGA----------------------------------HRGSYGHDNQPGH 458 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----------------------------------~~~~~~~~~~~~h 458 (583)
..+.++++ ++++.+++++.|+.|++|++.+++ ....+ .|
T Consensus 373 ~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 445 (615)
T 1pgu_A 373 NLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV------RL 445 (615)
T ss_dssp SCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE------EC
T ss_pred CceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec------cc
Confidence 67777888 567788888888888888876432 22222 36
Q ss_pred ccCeeEEEEeCCCcEEEEeec-CCcEEEEEccCCCCCce-EE-eeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccc
Q psy14906 459 VGGVRGVVSDNLNQIVISGGN-DQTVKVWHFKQTGKPPL-RS-IKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCT 535 (583)
Q Consensus 459 ~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~-~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 535 (583)
...+.+++|+ +++|++++. |+.|++||+.+. +.. .. ..+...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 446 ~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 446 NSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL--EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp SSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE--EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCceEEEEc--CCEEEEeecCCCeEEEEECCCc--cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence 7889999998 889999999 999999999886 443 22 2355789999999999999999999999999999999
Q ss_pred eEEeecc-cccceeeEEecC----------CCcEEEEEeCCCeEEEEeCCCc-cccccc
Q psy14906 536 IIRKLSG-HMGQLTDADFSP----------DSRWLITASMDCTIRVWDIPSS-QLIDCF 582 (583)
Q Consensus 536 ~~~~~~~-h~~~v~~l~~s~----------d~~~l~s~~~d~~i~vw~~~~~-~~~~~~ 582 (583)
.+..+.+ |...|++++|+| ++++|++++.|+.|++||+.++ +++..+
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 580 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 580 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence 9999988 999999999999 9999999999999999999987 666554
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-50 Score=428.37 Aligned_cols=462 Identities=12% Similarity=0.118 Sum_probs=370.5
Q ss_pred eecCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEee--C-eEEEEEcCCeEEEEec-ccee
Q psy14906 28 VSNHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSD--F-FHIYTSANNIIYAWRR-GIDI 103 (583)
Q Consensus 28 ~~~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~~--~-~~~~~~~~~~i~vw~~-~~~~ 103 (583)
-.+.-..+++|+|+++. +++++.++.|++||+.+++.+..+.+|..+|++++|+ + .+++++.|+.|++||. +++.
T Consensus 11 ~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 34566788999998765 4555589999999999999999999999999999984 3 5777889999999996 5678
Q ss_pred eeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCC-cEEEEeeccCCceEEecccCCcceEEEeeCC-CCCEEEE
Q psy14906 104 VGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAE-ETYLELSFDNDTFKIMGKRWNSCVNVLEPSP-VVDIIGV 179 (583)
Q Consensus 104 ~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~ 179 (583)
+..+.+|...|+++ +|++++|++++.||.|++||+.++ .....+. +|...|.+++|+| +++.|++
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----------~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-----------GHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-----------CCSSCEEEEEEETTEEEEEEE
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-----------CCCCcEEEEEEEcCCCCEEEE
Confidence 88999999999997 999999999999999999999987 5566666 8899999999999 8999999
Q ss_pred EecCCeEEEEEccCCceeEEEeccC-CCeEEEEEec--CCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEE
Q psy14906 180 GLSNKKIILHNILTDESLMEFIQTW-GPVTALSFRT--DGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHF 256 (583)
Q Consensus 180 ~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 256 (583)
++.||.|++||+.+++....+..+. ..+.+++|+| +++ ++++++.||.|++||+.+++.+..+ .+|...|.+++|
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~v~~~~~ 236 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEE
Confidence 9999999999999888888877654 8999999999 888 8999999999999999999998888 789999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCC-EEEEeeCCCcEEEEEccccccceeecc
Q psy14906 257 LYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSD-NILSAAGDSTLRIFNTKSETSNKNLGI 335 (583)
Q Consensus 257 ~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 335 (583)
+|++++|++++.||.|++|++. ..+.+..+..|...+.+++|+| ++. .+++.+.++.+.+|++........+..
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSS----TYKVEKTLNVGLERSWCIATHP-TGRKNYIASGFDNGFTVLSLGNDEPTLSLDP 311 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETT----TCSEEEEECCSSSSEEEEEECT-TCGGGEEEEEETTEEEEEECSCCSCCEEECS
T ss_pred cCCCCEEEEEeCCCeEEEEECC----CCcEEEEeecCCCcEEEEEEcc-CCCceEEEEEeCCCEEEEEcCCCCceeEECC
Confidence 9999999999999999999765 4677888888999999999998 554 345555677899999876543322211
Q ss_pred chhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCc---eEE------EeecCcccccceeeeccc
Q psy14906 336 ASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKN---KVS------LWSFYKSKMDDMFLVPER 406 (583)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~------~~~~~~~~~~~~~~~~~~ 406 (583)
. ...++....+. .+. .|+....... .....
T Consensus 312 ~--------------------------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 350 (814)
T 3mkq_A 312 V--------------------------------------GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPL---SLQTK 350 (814)
T ss_dssp S--------------------------------------SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCB---CCCCE
T ss_pred C--------------------------------------CCEEEECcccccceeeeeeecccccccccCccc---eeeee
Confidence 0 11111111110 000 0111111110 00111
Q ss_pred ccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEE
Q psy14906 407 CKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVW 486 (583)
Q Consensus 407 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 486 (583)
....+...+.+++|+|+|+++++++ +|.+.+|++.... ..+.+.+.+++|+|+++++++++.+|.|++|
T Consensus 351 ~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~----------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~ 419 (814)
T 3mkq_A 351 ELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR----------NKAFGKCQDFVWGPDSNSYALIDETGQIKYY 419 (814)
T ss_dssp EECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE----------EEEEEECSEEEECTTSSCEEEECTTCCEEEE
T ss_pred cCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc----------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEE
Confidence 1122335789999999999999998 8999999975322 2456789999999999999999999999999
Q ss_pred EccCCCCCceEEeeccCCeeeEEeccCC---cEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEE-
Q psy14906 487 HFKQTGKPPLRSIKLDNGISFFRTHQES---SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITA- 562 (583)
Q Consensus 487 d~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~- 562 (583)
+... .+...+.++.|+|++ .+|++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++
T Consensus 420 ~~~~---------~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~ 487 (814)
T 3mkq_A 420 KNFK---------EVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVN 487 (814)
T ss_dssp ETTE---------ECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEE
T ss_pred ECCC---------CccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEE
Confidence 6432 234578899999998 6889999999999999999999999988765 89999999999999
Q ss_pred -----eCCCeEEEEe
Q psy14906 563 -----SMDCTIRVWD 572 (583)
Q Consensus 563 -----~~d~~i~vw~ 572 (583)
+.+..+.+|.
T Consensus 488 ~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 488 TNSNGDEASGYTLLF 502 (814)
T ss_dssp CCCSSCSCSEEEEEE
T ss_pred cCcccCCceEEEEEe
Confidence 6666555554
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2e-49 Score=419.37 Aligned_cols=442 Identities=14% Similarity=0.145 Sum_probs=355.8
Q ss_pred EEEeecCCCCCCeEEEEee--C-eEEEEEcCCeEEEEec-cceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEE
Q psy14906 64 KLLSVSPQHEDDITCLSSD--F-FHIYTSANNIIYAWRR-GIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWD 137 (583)
Q Consensus 64 ~~~~~~~~h~~~v~~~~~~--~-~~~~~~~~~~i~vw~~-~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd 137 (583)
+..+.+.+|.+.|++++++ + .+++++.+|.|++||. .++.+..+.+|..+|.++ +|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 3456678899999999994 4 4667778999999996 678889999999999997 99999999999999999999
Q ss_pred cCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCC-ceeEEEeccCCCeEEEEEec-C
Q psy14906 138 IKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTD-ESLMEFIQTWGPVTALSFRT-D 215 (583)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~-~ 215 (583)
+.+++.+..+. .|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| +
T Consensus 84 ~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 84 YNTGEKVVDFE-----------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp TTTCCEEEEEE-----------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred CCCCcEEEEEe-----------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence 99999999987 89999999999999999999999999999999987 67778889999999999999 6
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEec--CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccC
Q psy14906 216 GPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLY--NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGH 293 (583)
Q Consensus 216 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 293 (583)
+. ++++++.||.|++||+.+++....+...+...+.+++|+| ++++|++++.|+.|++|++. ....+..+.+|
T Consensus 153 ~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~ 227 (814)
T 3mkq_A 153 PS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGH 227 (814)
T ss_dssp EE-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECC
T ss_pred CC-EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCC
Confidence 77 8999999999999999988887777445558999999999 99999999999999999765 46778888999
Q ss_pred CCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccc
Q psy14906 294 SAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKD 373 (583)
Q Consensus 294 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (583)
...|.+++|+| ++.++++++.||.|++||+.+++....+... ...+..+.+. ++
T Consensus 228 ~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~---------------------~~~v~~~~~~----~~ 281 (814)
T 3mkq_A 228 MSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG---------------------LERSWCIATH----PT 281 (814)
T ss_dssp SSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEECCS---------------------SSSEEEEEEC----TT
T ss_pred CCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecC---------------------CCcEEEEEEc----cC
Confidence 99999999998 8999999999999999999987765544211 1122222222 22
Q ss_pred cccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCce---EEE------EEcccC
Q psy14906 374 WNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGH---VDR------FNIQSG 444 (583)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~i------~d~~~~ 444 (583)
...++.+...++.+.+|+... ....+.++|+++.+++++.+.. +.. |++..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (814)
T 3mkq_A 282 GRKNYIASGFDNGFTVLSLGN-------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD 342 (814)
T ss_dssp CGGGEEEEEETTEEEEEECSC-------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred CCceEEEEEeCCCEEEEEcCC-------------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence 233333344455677777643 2446778899988888765542 221 222222
Q ss_pred ccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCc
Q psy14906 445 AHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDF 524 (583)
Q Consensus 445 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 524 (583)
...... ......+...+.+++|+|+++++++++ |+.+.+|++... . ....+.+.+++|+|+++++|+++.++
T Consensus 343 ~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~--~----~~~~~~i~~~~~spdg~~la~~~~~g 414 (814)
T 3mkq_A 343 EPLSLQ-TKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW--R----NKAFGKCQDFVWGPDSNSYALIDETG 414 (814)
T ss_dssp SCBCCC-CEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT--E----EEEEEECSEEEECTTSSCEEEECTTC
T ss_pred ccceee-eecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc--c----ccCCCceEEEEEeCCCCeEEEEeCCC
Confidence 222111 000135667899999999999999988 899999997643 1 22345788999999999999999999
Q ss_pred eEEEEEccccceEEeecccccceeeEEecCCC---cEEEEEeCCCeEEEEeCCCccccccc
Q psy14906 525 TVNIIDIDTCTIIRKLSGHMGQLTDADFSPDS---RWLITASMDCTIRVWDIPSSQLIDCF 582 (583)
Q Consensus 525 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~---~~l~s~~~d~~i~vw~~~~~~~~~~~ 582 (583)
.|++|+ .+.+|...+.+++|+||+ .+|++++.|+.|++||+.+++++..+
T Consensus 415 ~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 467 (814)
T 3mkq_A 415 QIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRI 467 (814)
T ss_dssp CEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEE
T ss_pred cEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEE
Confidence 999996 345688889999999998 68899999999999999999988765
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-47 Score=360.53 Aligned_cols=293 Identities=17% Similarity=0.315 Sum_probs=263.9
Q ss_pred CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEE
Q psy14906 194 DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLK 273 (583)
Q Consensus 194 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 273 (583)
.+....+.+|.+.|++++|+|+++ +|++++.||+|++||+.+++.+..+ ..|...|.+++|+|++++|++++.|+.++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 355678899999999999999999 9999999999999999999988888 78999999999999999999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccc
Q psy14906 274 LWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 274 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
+|++............+.+|...|.++.|++ ++ .+++++.|++|++||+.+++....+
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~-------------------- 180 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTF-------------------- 180 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEE--------------------
Confidence 9987655444566778889999999999986 44 6999999999999999887554332
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS 433 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 433 (583)
..|...+.+++|+|+++++++|+.|
T Consensus 181 -------------------------------------------------------~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 181 -------------------------------------------------------TGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp -------------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -------------------------------------------------------cCCCCceEEEEECCCCCEEEEEeCC
Confidence 1122679999999999999999999
Q ss_pred ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeecc---CCeeeEEe
Q psy14906 434 GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLD---NGISFFRT 510 (583)
Q Consensus 434 g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~ 510 (583)
|.|++||+.++.....+ .+|...|++++|+|++++|++++.||+|++||+... +.+..+.+. ..+.+++|
T Consensus 206 ~~v~~wd~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 206 ASAKLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp SCEEEEETTTCSEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEE
T ss_pred CcEEEEECCCCeeEEEE-----cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC--cEEEEEccCCcccceEEEEE
Confidence 99999999999988888 799999999999999999999999999999999987 666666554 37999999
Q ss_pred ccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeEEEEe
Q psy14906 511 HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572 (583)
Q Consensus 511 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~ 572 (583)
+|+|++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+||+++|++++.|++|++||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.6e-48 Score=370.37 Aligned_cols=304 Identities=20% Similarity=0.330 Sum_probs=261.6
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 239 (583)
+|..+|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC 184 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce
Confidence 8999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcE
Q psy14906 240 ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTL 319 (583)
Q Consensus 240 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 319 (583)
+..+ .+|...|.+++|+|++++|++++.|++|++||+. .+..+..+.+|...|.++.++| ++.+|++++.|++|
T Consensus 185 ~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 185 IRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTV 258 (410)
T ss_dssp EECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred eEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeE
Confidence 9888 7999999999999999999999999999999775 4677888999999999999997 89999999999999
Q ss_pred EEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccc
Q psy14906 320 RIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDD 399 (583)
Q Consensus 320 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (583)
++||+.++.....+
T Consensus 259 ~vwd~~~~~~~~~~------------------------------------------------------------------ 272 (410)
T 1vyh_C 259 RVWVVATKECKAEL------------------------------------------------------------------ 272 (410)
T ss_dssp EEEETTTCCEEEEE------------------------------------------------------------------
T ss_pred EEEECCCCceeeEe------------------------------------------------------------------
Confidence 99999876543322
Q ss_pred eeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec
Q psy14906 400 MFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN 479 (583)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 479 (583)
..|...+.+++|+|++.+...... .+ .......+.+.+|++++.
T Consensus 273 ---------~~h~~~v~~~~~~~~~~~~~~~~~-----------------------~~----~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 273 ---------REHRHVVECISWAPESSYSSISEA-----------------------TG----SETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp ---------CCCSSCEEEEEECCSCGGGGGGGC-----------------------CS----CC-------CCEEEEEET
T ss_pred ---------cCCCceEEEEEEcCcccccchhhh-----------------------cc----ccccccCCCCCEEEEEeC
Confidence 012256788888887643111000 00 011122345789999999
Q ss_pred CCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcE
Q psy14906 480 DQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRW 558 (583)
Q Consensus 480 dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 558 (583)
|+.|++||+.++ .++..+. |...|.+++|+|+|++|++|+.|+.|++||+.+++++..+.+|...|++++|+|++++
T Consensus 317 D~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 317 DKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp TSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred CCeEEEEECCCC--ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence 999999999988 7777665 4568999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEeCC
Q psy14906 559 LITASMDCTIRVWDIP 574 (583)
Q Consensus 559 l~s~~~d~~i~vw~~~ 574 (583)
|++|+.|++|++|+++
T Consensus 395 l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 395 VVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEETTSEEEEEC--
T ss_pred EEEEeCCCcEEEEeCC
Confidence 9999999999999863
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-48 Score=370.07 Aligned_cols=316 Identities=18% Similarity=0.261 Sum_probs=271.7
Q ss_pred CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEE
Q psy14906 184 KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLL 263 (583)
Q Consensus 184 ~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 263 (583)
..+..|+.....+...+.+|.+.|++++|+|+++ +|++|+.||+|++||+.+++....+ ..|...|.+++|+|++++|
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTTSSEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCCCCEE
Confidence 3455677777788889999999999999999998 8999999999999999999999888 7899999999999999999
Q ss_pred EEEeCCCeEEEEEccCCC---CCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhh
Q psy14906 264 VTSSPDNTLKLWIFDKAD---GNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANR 340 (583)
Q Consensus 264 ~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 340 (583)
++++.|+.+++|++.... +.......+.+|...+.++.|.|.++..|++++.|++|++||+.+++....+..
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----- 198 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS----- 198 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-----
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-----
Confidence 999999999999875321 123345667899999999999986677899999999999999988765443311
Q ss_pred hhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEE
Q psy14906 341 NNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYI 420 (583)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 420 (583)
.....|...+.++++
T Consensus 199 -----------------------------------------------------------------~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 199 -----------------------------------------------------------------EFPSGHTADVLSLSI 213 (380)
T ss_dssp -----------------------------------------------------------------CSSSSCCSCEEEEEE
T ss_pred -----------------------------------------------------------------ccCCCCccCeEEEEe
Confidence 011223367889999
Q ss_pred cc-CCcEEEEEecCceEEEEEcc-cCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEE
Q psy14906 421 TH-CGNFVLIGYSSGHVDRFNIQ-SGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRS 498 (583)
Q Consensus 421 s~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 498 (583)
++ +++++++|+.||.|++||++ .+.....+ .+|...|++++|+|++++|++++.||+|++||+.++ ..+..
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~--~~~~~ 286 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTY-----HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--HQLQV 286 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEE-----CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--EEEEE
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEE-----CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--cEEEE
Confidence 77 78999999999999999997 44666666 789999999999999999999999999999999987 66665
Q ss_pred eecc--------CCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEee----cccccceeeEEecCCCcEEEEEeCCC
Q psy14906 499 IKLD--------NGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKL----SGHMGQLTDADFSPDSRWLITASMDC 566 (583)
Q Consensus 499 ~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~h~~~v~~l~~s~d~~~l~s~~~d~ 566 (583)
+... ..+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++|+.|+
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence 5432 24899999999999999999999999999999888776 68999999999999999999999999
Q ss_pred eEEEEeCCCccc
Q psy14906 567 TIRVWDIPSSQL 578 (583)
Q Consensus 567 ~i~vw~~~~~~~ 578 (583)
+|++|++..++.
T Consensus 367 ~i~iW~~~~~~~ 378 (380)
T 3iz6_a 367 NLKIWAFSGHRK 378 (380)
T ss_dssp CEEEEECCSSSS
T ss_pred CEEEEecCCCcc
Confidence 999999987654
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.7e-47 Score=351.34 Aligned_cols=284 Identities=14% Similarity=0.193 Sum_probs=241.8
Q ss_pred cCCcceEEEeeCCC----CCEEEEEecCCeEEEEEccCCce--eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q psy14906 160 RWNSCVNVLEPSPV----VDIIGVGLSNKKIILHNILTDES--LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWN 233 (583)
Q Consensus 160 ~~~~~i~~~~~s~~----~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 233 (583)
+|.+.|.+++|+|+ +++|++|+.|++|++|++.+++. ...+.+|...|.+++|+++++ ++++++.|++|++||
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWD 108 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcEEEEE
Confidence 89999999999985 67999999999999999987754 456789999999999999998 999999999999999
Q ss_pred CCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEe
Q psy14906 234 LEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSA 313 (583)
Q Consensus 234 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 313 (583)
+.+++.+..+ ..|...+.+++|+|++++|++++.|+.+++|+++ ..+....+..|...+.+++|+| ++++|+++
T Consensus 109 ~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~----~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg 182 (321)
T 3ow8_A 109 LENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE----SGKKEYSLDTRGKFILSIAYSP-DGKYLASG 182 (321)
T ss_dssp TTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT----TCSEEEEEECSSSCEEEEEECT-TSSEEEEE
T ss_pred CCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC----CCceeEEecCCCceEEEEEECC-CCCEEEEE
Confidence 9999998888 7888899999999999999999999999999765 3344445555555566666654 55555555
Q ss_pred eCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecC
Q psy14906 314 AGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFY 393 (583)
Q Consensus 314 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 393 (583)
+.||.|++||+.
T Consensus 183 ~~dg~i~iwd~~-------------------------------------------------------------------- 194 (321)
T 3ow8_A 183 AIDGIINIFDIA-------------------------------------------------------------------- 194 (321)
T ss_dssp ETTSCEEEEETT--------------------------------------------------------------------
T ss_pred cCCCeEEEEECC--------------------------------------------------------------------
Confidence 555555555544
Q ss_pred cccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcE
Q psy14906 394 KSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQI 473 (583)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 473 (583)
+++.+..+ .+|...|++++|+|++++
T Consensus 195 -------------------------------------------------~~~~~~~~-----~~h~~~v~~l~~spd~~~ 220 (321)
T 3ow8_A 195 -------------------------------------------------TGKLLHTL-----EGHAMPIRSLTFSPDSQL 220 (321)
T ss_dssp -------------------------------------------------TTEEEEEE-----CCCSSCCCEEEECTTSCE
T ss_pred -------------------------------------------------CCcEEEEE-----cccCCceeEEEEcCCCCE
Confidence 44444444 678899999999999999
Q ss_pred EEEeecCCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEe
Q psy14906 474 VISGGNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADF 552 (583)
Q Consensus 474 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~ 552 (583)
|++++.|+.|++||+... .....+. +...|.+++|+|++++|++++.|+.|++||+.+++++..+.+|...|.+++|
T Consensus 221 l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 221 LVTASDDGYIKIYDVQHA--NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298 (321)
T ss_dssp EEEECTTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCc--ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEE
Confidence 999999999999999987 7776665 4468999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEeCCCeEEEEeCC
Q psy14906 553 SPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 553 s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
+|++++|++++.|++|++||..
T Consensus 299 s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 299 NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999964
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-47 Score=369.60 Aligned_cols=299 Identities=19% Similarity=0.264 Sum_probs=268.3
Q ss_pred EEEEeccceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeC
Q psy14906 94 IYAWRRGIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPS 171 (583)
Q Consensus 94 i~vw~~~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 171 (583)
...|.........+.+|..+|+++ +|++++|++|+.||+|++||+.+++....+. +|...|.+++|+
T Consensus 91 ~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-----------~h~~~V~~v~~~ 159 (410)
T 1vyh_C 91 PKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-----------GHTDSVQDISFD 159 (410)
T ss_dssp -CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-----------CCSSCEEEEEEC
T ss_pred ccccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----------ccCCcEEEEEEc
Confidence 344554444566788999999997 9999999999999999999999999998887 999999999999
Q ss_pred CCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccce
Q psy14906 172 PVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVV 251 (583)
Q Consensus 172 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 251 (583)
|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|+++ +|++|+.|++|++||+.+++++..+ .+|...|
T Consensus 160 ~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v 237 (410)
T 1vyh_C 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTF-TGHREWV 237 (410)
T ss_dssp TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEE-ECCSSCE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEE-eCCCccE
Confidence 9999999999999999999999999999999999999999999998 8999999999999999999999888 7999999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC-------------------CCEEEE
Q psy14906 252 TGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS-------------------SDNILS 312 (583)
Q Consensus 252 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l~~ 312 (583)
.++.|+|++++|++++.|+.|++|++. .......+.+|...|.+++|+|.. +.+|++
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 999999999999999999999999775 456777889999999999999732 568999
Q ss_pred eeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeec
Q psy14906 313 AAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSF 392 (583)
Q Consensus 313 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 392 (583)
++.|++|++||+.++.+...+
T Consensus 314 gs~D~~i~iwd~~~~~~~~~~----------------------------------------------------------- 334 (410)
T 1vyh_C 314 GSRDKTIKMWDVSTGMCLMTL----------------------------------------------------------- 334 (410)
T ss_dssp EETTSEEEEEETTTTEEEEEE-----------------------------------------------------------
T ss_pred EeCCCeEEEEECCCCceEEEE-----------------------------------------------------------
Confidence 999999999999877554332
Q ss_pred CcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc
Q psy14906 393 YKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ 472 (583)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 472 (583)
..|...|.+++|+|++++|++|+.||.|++||+.+++....+ .+|...|++++|+|+++
T Consensus 335 ----------------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 335 ----------------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-----NAHEHFVTSLDFHKTAP 393 (410)
T ss_dssp ----------------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-----ECCSSCEEEEEECSSSS
T ss_pred ----------------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-----cCCCCcEEEEEEcCCCC
Confidence 112267999999999999999999999999999999988888 78999999999999999
Q ss_pred EEEEeecCCcEEEEEcc
Q psy14906 473 IVISGGNDQTVKVWHFK 489 (583)
Q Consensus 473 ~l~s~~~dg~i~iwd~~ 489 (583)
+|++|+.||+|++|+++
T Consensus 394 ~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEETTSEEEEEC--
T ss_pred EEEEEeCCCcEEEEeCC
Confidence 99999999999999863
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-46 Score=354.17 Aligned_cols=290 Identities=19% Similarity=0.297 Sum_probs=261.2
Q ss_pred ceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEE
Q psy14906 101 IDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIG 178 (583)
Q Consensus 101 ~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 178 (583)
.+...++.+|.++|+++ +|++++|++++.||+|++||+.+++.+..+. .|...|.+++|+|++++|+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-----------LRSSWVMTCAYAPSGNYVA 113 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----------CSSSCEEEEEECTTSSEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-----------cCCccEEEEEECCCCCEEE
Confidence 35577899999999997 8999999999999999999999999999887 8899999999999999999
Q ss_pred EEecCCeEEEEEccCC----ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEE
Q psy14906 179 VGLSNKKIILHNILTD----ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGA 254 (583)
Q Consensus 179 ~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 254 (583)
+|+.|+.|++|++.++ +....+.+|.+.|.++.|++++. +++++.|+.|++||+++++.+..+ .+|...|.++
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~ 190 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSL 190 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEE
T ss_pred EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEE
Confidence 9999999999999875 35566789999999999999884 889999999999999999999888 7999999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeec
Q psy14906 255 HFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334 (583)
Q Consensus 255 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 334 (583)
+|+|++++|++++.|+.|++||+. .......+.+|...|.+++|+| ++++|++++.||+|++||+++++....+.
T Consensus 191 ~~~~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 191 SLAPDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EECCCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999765 4567788999999999999998 89999999999999999998765433221
Q ss_pred cchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCC
Q psy14906 335 IASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSK 414 (583)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (583)
.. .....
T Consensus 266 ~~-------------------------------------------------------------------------~~~~~ 272 (340)
T 1got_B 266 HD-------------------------------------------------------------------------NIICG 272 (340)
T ss_dssp CT-------------------------------------------------------------------------TCCSC
T ss_pred cC-------------------------------------------------------------------------Ccccc
Confidence 00 00146
Q ss_pred ceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEE
Q psy14906 415 PTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWH 487 (583)
Q Consensus 415 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 487 (583)
+.+++|+|+++++++|+.||.|++||+.+++....+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-----ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999999999999999999999988888 79999999999999999999999999999996
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=348.66 Aligned_cols=292 Identities=16% Similarity=0.263 Sum_probs=259.4
Q ss_pred eeeeeecccCccEEEE--cc----CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCC
Q psy14906 102 DIVGTYKGHTSPVHLI--LP----FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVD 175 (583)
Q Consensus 102 ~~~~~~~~h~~~v~~i--s~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 175 (583)
...+.+++|.+.|+++ +| ++++|++|+.|++|++||+.+++......+. +|...|.+++|++++.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~---------gh~~~v~~~~~~~~~~ 93 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE---------GHQLGVVSVDISHTLP 93 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC---------CCSSCEEEEEECSSSS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec---------cCCCCEEEEEECCCCC
Confidence 4456678999999998 44 4679999999999999999887654332222 8999999999999999
Q ss_pred EEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEE
Q psy14906 176 IIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAH 255 (583)
Q Consensus 176 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 255 (583)
++++++.|++|++||+.+++.+..+..+...+.+++|+|+++ +|++++.||.|++||+++++....+ ..|...|.+++
T Consensus 94 ~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~ 171 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIA 171 (321)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEE
Confidence 999999999999999999999999999989999999999999 9999999999999999999888887 68889999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeecc
Q psy14906 256 FLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGI 335 (583)
Q Consensus 256 ~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 335 (583)
|+|++++|++++.|+.|++||+. .++.+..+.+|..+|.+++|+| ++++|++++.|+.|++||++++.....+
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~-- 244 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL-- 244 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEE--
T ss_pred ECCCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEE--
Confidence 99999999999999999999765 5678888999999999999998 8999999999999999999876543322
Q ss_pred chhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCc
Q psy14906 336 ASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKP 415 (583)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 415 (583)
..|...|
T Consensus 245 -------------------------------------------------------------------------~~h~~~v 251 (321)
T 3ow8_A 245 -------------------------------------------------------------------------SGHASWV 251 (321)
T ss_dssp -------------------------------------------------------------------------CCCSSCE
T ss_pred -------------------------------------------------------------------------cCCCCce
Confidence 1122679
Q ss_pred eEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEcc
Q psy14906 416 TCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFK 489 (583)
Q Consensus 416 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 489 (583)
.+++|+|++++|++++.|+.|++||+.+++++..+ .+|...|.+++|+|++++|++++.||.|++||..
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-----FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-----cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999888 7899999999999999999999999999999963
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-46 Score=364.25 Aligned_cols=341 Identities=18% Similarity=0.220 Sum_probs=286.8
Q ss_pred CcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCC-EEEEEecCCeEEEEEc----cCCc------eeEE
Q psy14906 131 SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVD-IIGVGLSNKKIILHNI----LTDE------SLME 199 (583)
Q Consensus 131 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iw~~----~~~~------~~~~ 199 (583)
..+.+|+++......... .|...|.+++|+|+++ +||+|+.||.|++|++ .+++ ....
T Consensus 25 ~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 93 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEI-----------VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAE 93 (425)
T ss_dssp ---------CCCEECEEE-----------EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEE
T ss_pred cccccccchhhhhheeee-----------eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccc
Confidence 456788887766555544 6779999999999999 9999999999999999 8888 4555
Q ss_pred Eec----------cCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCC
Q psy14906 200 FIQ----------TWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPD 269 (583)
Q Consensus 200 ~~~----------~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 269 (583)
+.. |...|++++|+|+++ +|++++.||.|++|| .+++.+..+ .+|...|.+++|+|++++|++++.|
T Consensus 94 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 170 (425)
T 1r5m_A 94 LRHPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVE 170 (425)
T ss_dssp EECCCCCC------CBCEEEEEECTTSS-EEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccccCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecC
Confidence 554 677999999999999 899999999999999 567777777 7899999999999999999999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCC---------------CeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeec
Q psy14906 270 NTLKLWIFDKADGNGRLLRIREGHSAP---------------PNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334 (583)
Q Consensus 270 ~~i~~w~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 334 (583)
+.+++|++. ..+.+..+..+... +.++.|+| + ..+++++.+|.|++||+.+++....+.
T Consensus 171 ~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 171 NVTILWNVI----SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp CCEEEEETT----TTEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred CeEEEEECC----CCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeec
Confidence 999999775 45677777777666 99999997 3 578999999999999998765443321
Q ss_pred cchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCC
Q psy14906 335 IASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSK 414 (583)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (583)
.+...
T Consensus 245 ---------------------------------------------------------------------------~~~~~ 249 (425)
T 1r5m_A 245 ---------------------------------------------------------------------------GHHGP 249 (425)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred ---------------------------------------------------------------------------cCCCc
Confidence 11257
Q ss_pred ceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCC
Q psy14906 415 PTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKP 494 (583)
Q Consensus 415 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 494 (583)
+.+++|+|+++++++++.||.|++||+.+++....+ ..|...|.+++|+|++ ++++++.|+.|++||+.+. +
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~ 321 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF-----YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN--T 321 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEE-----CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT--E
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEe-----cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC--c
Confidence 899999999999999999999999999999888888 6899999999999999 9999999999999999987 7
Q ss_pred ceEEeec-cCCeeeEEeccCCcEEEEEeCCceEEEEEccccc--------------------eEEeeccccc--ceeeEE
Q psy14906 495 PLRSIKL-DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCT--------------------IIRKLSGHMG--QLTDAD 551 (583)
Q Consensus 495 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~h~~--~v~~l~ 551 (583)
.+..+.. ...+.+++|+|++++|++++.||.|++||+.+++ .+..+.+|.. .|++++
T Consensus 322 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 322 LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401 (425)
T ss_dssp EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence 7776664 5689999999999999999999999999999988 8899999976 999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCC
Q psy14906 552 FSPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 552 ~s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
|+|++++|++++.||.|++|+++
T Consensus 402 ~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999986
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-46 Score=350.95 Aligned_cols=283 Identities=19% Similarity=0.281 Sum_probs=249.9
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC--
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR-- 237 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-- 237 (583)
+|...|.+++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++. ++++++.|+.+++|++...
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS-EEEEESTTSEEEEEECCCCTT
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC-EEEEeeCCCCEEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999998643
Q ss_pred ----eehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeC-CCCEEEE
Q psy14906 238 ----QVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN-SSDNILS 312 (583)
Q Consensus 238 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~ 312 (583)
.....+ .+|...|.+++|+|++..|++++.|++|++||++ .++.+..+.+|...|.++.++|. ++.+|++
T Consensus 141 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 141 ENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVE----SGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred ccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC----CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 223334 5799999999999999999999999999999775 56778888999999999999863 4578888
Q ss_pred eeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeec
Q psy14906 313 AAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSF 392 (583)
Q Consensus 313 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 392 (583)
++.||.|++||++++++
T Consensus 216 gs~Dg~v~~wd~~~~~~--------------------------------------------------------------- 232 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQC--------------------------------------------------------------- 232 (354)
T ss_dssp EETTSCEEEEETTTCCE---------------------------------------------------------------
T ss_pred EeCCCeEEEEECCCCcE---------------------------------------------------------------
Confidence 88888888888765432
Q ss_pred CcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc
Q psy14906 393 YKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ 472 (583)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 472 (583)
...+ .+|...|++++|+|+++
T Consensus 233 ------------------------------------------------------~~~~-----~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 233 ------------------------------------------------------VQAF-----ETHESDVNSVRYYPSGD 253 (354)
T ss_dssp ------------------------------------------------------EEEE-----CCCSSCEEEEEECTTSS
T ss_pred ------------------------------------------------------EEEe-----cCCCCCeEEEEEeCCCC
Confidence 1222 57888999999999999
Q ss_pred EEEEeecCCcEEEEEccCCCCCceEEeecc---CCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceee
Q psy14906 473 IVISGGNDQTVKVWHFKQTGKPPLRSIKLD---NGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTD 549 (583)
Q Consensus 473 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~ 549 (583)
+|++++.|++|++||+... +.+..+... ..+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...|++
T Consensus 254 ~l~s~s~D~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~ 331 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRAD--REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST 331 (354)
T ss_dssp EEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred EEEEEeCCCeEEEEECCCC--cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence 9999999999999999876 555555433 36889999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEEeCCCeEEEEe
Q psy14906 550 ADFSPDSRWLITASMDCTIRVWD 572 (583)
Q Consensus 550 l~~s~d~~~l~s~~~d~~i~vw~ 572 (583)
++|+||+++|++++.|++|++|+
T Consensus 332 l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 332 LRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999996
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.3e-46 Score=342.46 Aligned_cols=288 Identities=19% Similarity=0.249 Sum_probs=253.5
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 239 (583)
+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|+++ +|++|+.|+.|++||+.+++.
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCCcE
Confidence 8999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcE
Q psy14906 240 ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTL 319 (583)
Q Consensus 240 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 319 (583)
+..+ .+|...|.+++|+|++++|++++.|++|++||+.. .......+.+|...|.+++|+|.++..|++++.|++|
T Consensus 90 ~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~---~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 90 VVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp EEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG---TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred EEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC---CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 9888 79999999999999999999999999999998763 2355677889999999999998678899999999999
Q ss_pred EEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccc
Q psy14906 320 RIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDD 399 (583)
Q Consensus 320 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (583)
++||+.+......+
T Consensus 166 ~iwd~~~~~~~~~~------------------------------------------------------------------ 179 (304)
T 2ynn_A 166 KVWSLGQSTPNFTL------------------------------------------------------------------ 179 (304)
T ss_dssp EEEETTCSSCSEEE------------------------------------------------------------------
T ss_pred EEEECCCCCcccee------------------------------------------------------------------
Confidence 99998653211100
Q ss_pred eeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC--CCcEEEEe
Q psy14906 400 MFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN--LNQIVISG 477 (583)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~ 477 (583)
. ..|...+..+.|+| ++++|+++
T Consensus 180 --------------------------------------------------~-----~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 180 --------------------------------------------------T-----TGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp --------------------------------------------------E-----CCCTTCEEEEEECCSTTCCEEEEE
T ss_pred --------------------------------------------------c-----cCCcCcEEEEEEEEcCCCCEEEEE
Confidence 0 24556678888876 67899999
Q ss_pred ecCCcEEEEEccCCCCCceEEeec-cCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCC
Q psy14906 478 GNDQTVKVWHFKQTGKPPLRSIKL-DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDS 556 (583)
Q Consensus 478 ~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~ 556 (583)
+.|++|++||+.++ +++..+.. ...|.+++|+|++++|++|+.||.|++||+.+++++..+..|...+.+++|+|++
T Consensus 205 s~D~~i~iWd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 205 SDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp ETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC
T ss_pred cCCCeEEEEeCCCC--ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC
Confidence 99999999999988 77777764 4789999999999999999999999999999999999999999999999999987
Q ss_pred c--EEEEEeCCCeEEEEeCCCc
Q psy14906 557 R--WLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 557 ~--~l~s~~~d~~i~vw~~~~~ 576 (583)
. ++++++.|| +.+|++.+.
T Consensus 283 ~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 283 RKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp GGGCEEEEETTE-EEEEECC--
T ss_pred CceEEEEecCCc-eEEEEeccC
Confidence 5 577776555 788888653
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.2e-46 Score=345.23 Aligned_cols=285 Identities=18% Similarity=0.307 Sum_probs=246.8
Q ss_pred cCCcceEEEeeCCCC-CEEEEEecCCeEEEEEccC-----CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q psy14906 160 RWNSCVNVLEPSPVV-DIIGVGLSNKKIILHNILT-----DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWN 233 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 233 (583)
+|.+.|.+++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA-YALSASWDKTLRLWD 93 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC-EEEEEeCCCEEEEEE
Confidence 999999999999965 8999999999999999864 345678899999999999999999 999999999999999
Q ss_pred CCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeC-----CCC
Q psy14906 234 LEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN-----SSD 308 (583)
Q Consensus 234 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~ 308 (583)
+.+++.+..+ .+|...|.+++|+|++.+|++++.|+.|++|+++ ...+..+.+|...|.++.+.|. ++.
T Consensus 94 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 94 VATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-----GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp TTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-----SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred CCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 9999999888 7999999999999999999999999999999763 4677788899999999999873 123
Q ss_pred EEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEE
Q psy14906 309 NILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVS 388 (583)
Q Consensus 309 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 388 (583)
.+++++.|+.|++||+
T Consensus 168 ~l~s~~~d~~i~~wd~---------------------------------------------------------------- 183 (319)
T 3frx_A 168 TIISAGNDKMVKAWNL---------------------------------------------------------------- 183 (319)
T ss_dssp EEEEEETTSCEEEEET----------------------------------------------------------------
T ss_pred EEEEEeCCCEEEEEEC----------------------------------------------------------------
Confidence 4555555555555554
Q ss_pred EeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEe
Q psy14906 389 LWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSD 468 (583)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s 468 (583)
.+++....+ .+|...|.+++|+
T Consensus 184 -----------------------------------------------------~~~~~~~~~-----~~h~~~v~~~~~s 205 (319)
T 3frx_A 184 -----------------------------------------------------NQFQIEADF-----IGHNSNINTLTAS 205 (319)
T ss_dssp -----------------------------------------------------TTTEEEEEE-----CCCCSCEEEEEEC
T ss_pred -----------------------------------------------------Ccchhheee-----cCCCCcEEEEEEc
Confidence 444433444 6899999999999
Q ss_pred CCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeec-------
Q psy14906 469 NLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS------- 541 (583)
Q Consensus 469 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------- 541 (583)
|++++|++++.||.|++||+.+. +++..+..+..+.+++|+|++.+|++++.+ .+++|+++.+..+..+.
T Consensus 206 p~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~ 282 (319)
T 3frx_A 206 PDGTLIASAGKDGEIMLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYS 282 (319)
T ss_dssp TTSSEEEEEETTCEEEEEETTTT--EEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCC--cEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccc
Confidence 99999999999999999999988 888888888999999999999999998866 59999999887766554
Q ss_pred -ccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCc
Q psy14906 542 -GHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 542 -~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~ 576 (583)
.|...+.+++|+|||++|++++.|+.|++||+.++
T Consensus 283 ~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 283 KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 34567999999999999999999999999999875
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-46 Score=352.22 Aligned_cols=316 Identities=15% Similarity=0.160 Sum_probs=240.1
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec------CCeEEEEEc
Q psy14906 118 LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS------NKKIILHNI 191 (583)
Q Consensus 118 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------d~~i~iw~~ 191 (583)
.+++.++.+ +.+.....|++..... . .|...|.+++|+|||++||+|+. |+.|++|+.
T Consensus 14 g~~~~~~~~-~g~~~~~~w~~p~~~p----~-----------~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~ 77 (357)
T 4g56_B 14 GTENLYFQS-NGSSKGSAWGRPVTAP----A-----------CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD 77 (357)
T ss_dssp ------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS
T ss_pred CccceEEec-CCCccccccCCCCCCc----c-----------cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC
Confidence 444445444 4467788998764321 2 78999999999999999999997 678999998
Q ss_pred cCCce----eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhh---hhccccceEEEEEecCCCEEE
Q psy14906 192 LTDES----LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI---KKAHRKVVTGAHFLYNEPLLV 264 (583)
Q Consensus 192 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~ 264 (583)
.++.. .....+|...|.+++|+|++. +++++.||+|++||+.+++..... ..+|...|.+++|+|++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 155 (357)
T 4g56_B 78 PEGAPNESLCTAGVQTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV 155 (357)
T ss_dssp CC---CGGGCSEEEECSSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEE
T ss_pred CCCCcceeEecccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEE
Confidence 77653 334457778999999999986 667788999999999987654332 147899999999999999999
Q ss_pred EEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhh
Q psy14906 265 TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLK 344 (583)
Q Consensus 265 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 344 (583)
+++.|+.|++||+. .++.+..+.+|...|.+++|+|....++++++.||+|++||+++++....+..
T Consensus 156 sgs~dg~v~iwd~~----~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~--------- 222 (357)
T 4g56_B 156 SGGKDFSVKVWDLS----QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF--------- 222 (357)
T ss_dssp EEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---------
T ss_pred EEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---------
Confidence 99999999999765 56888899999999999999985456899999999999999988765433210
Q ss_pred hhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC-
Q psy14906 345 RKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC- 423 (583)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~- 423 (583)
..+...+.+++|+|+
T Consensus 223 ----------------------------------------------------------------~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 223 ----------------------------------------------------------------CASDTIPTSVTWHPEK 238 (357)
T ss_dssp ----------------------------------------------------------------TTCCSCEEEEEECTTS
T ss_pred ----------------------------------------------------------------ccccccccchhhhhcc
Confidence 011256889999997
Q ss_pred CcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCC-cEEEEeecCCcEEEEEccCCCCCceEEeecc
Q psy14906 424 GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLN-QIVISGGNDQTVKVWHFKQTGKPPLRSIKLD 502 (583)
Q Consensus 424 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 502 (583)
+.++++|+.|+.|++||+.+++....+ .+|...|++++|+|++ ++|++++.|++|+|||++++ +++..+.|.
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--~~~~~~~H~ 311 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDSAQTS-----AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--EVFRDLSHR 311 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGGCEEE-----CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC--EEEEECCCS
T ss_pred cceEEEeecccceeEEECCCCcEeEEE-----eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC--cEeEECCCC
Confidence 468899999999999999999998888 7899999999999987 58999999999999999988 888888888
Q ss_pred CCeeeEEecc-CCcEEEEEeCCceEEEEEccccc
Q psy14906 503 NGISFFRTHQ-ESSMLAVCLDDFTVNIIDIDTCT 535 (583)
Q Consensus 503 ~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~ 535 (583)
..|++++|+| ++++|++++.||+|++|++.+..
T Consensus 312 ~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999999998 79999999999999999997543
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-45 Score=346.57 Aligned_cols=290 Identities=19% Similarity=0.270 Sum_probs=259.0
Q ss_pred eeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEE
Q psy14906 102 DIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGV 179 (583)
Q Consensus 102 ~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 179 (583)
+....+.+|...|+++ +|++++|++++.||+|++||..+++....+. .|...|.+++|+|++.+|++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-----------~~~~~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-----------MPCTWVMACAYAPSGCAIAC 123 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------CSSSCCCEEEECTTSSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-----------cCCCCEEEEEECCCCCEEEE
Confidence 4567899999999998 9999999999999999999999999888887 78889999999999999999
Q ss_pred EecCCeEEEEEccCC------ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEE
Q psy14906 180 GLSNKKIILHNILTD------ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTG 253 (583)
Q Consensus 180 ~~~d~~i~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 253 (583)
|+.|+.+++|++... .....+..|...|.+++|+|++. .|++++.|++|++||+++++++..+ .+|...|.+
T Consensus 124 g~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~ 201 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSF-HGHGADVLC 201 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEE
T ss_pred eeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEE
Confidence 999999999998643 34567788999999999999998 8999999999999999999999988 799999999
Q ss_pred EEEec--CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccce
Q psy14906 254 AHFLY--NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNK 331 (583)
Q Consensus 254 ~~~~~--~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 331 (583)
++|+| ++++|++++.|+.|++||+. .++.+..+.+|...|.+++|+| ++.+|++++.|++|++||++.+....
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~ 276 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVA 276 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99987 57899999999999999775 4567888999999999999998 79999999999999999998754332
Q ss_pred eeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccC
Q psy14906 332 NLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAK 411 (583)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (583)
.+... ..
T Consensus 277 ~~~~~-------------------------------------------------------------------------~~ 283 (354)
T 2pbi_B 277 IYSKE-------------------------------------------------------------------------SI 283 (354)
T ss_dssp EECCT-------------------------------------------------------------------------TC
T ss_pred EEcCC-------------------------------------------------------------------------Cc
Confidence 21100 00
Q ss_pred CCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEE
Q psy14906 412 QSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWH 487 (583)
Q Consensus 412 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 487 (583)
...+.+++|+|+++++++|+.|+.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|++|++|+
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-----~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-----FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-----ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 135789999999999999999999999999999988887 79999999999999999999999999999996
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=346.18 Aligned_cols=307 Identities=14% Similarity=0.201 Sum_probs=248.5
Q ss_pred ceeEEEeccCC-CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeeh--hhhhhccccceEEEEEecCCCEEEEEeCCCe
Q psy14906 195 ESLMEFIQTWG-PVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVE--NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNT 271 (583)
Q Consensus 195 ~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 271 (583)
+.+.++.+|.. .|.+++|+|+++ +|++|+.|++|++||+.+++.. ..+..+|...|.+++|+|++++|++++.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 56677888877 899999999999 8999999999999999887543 2232689999999999999999999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhc
Q psy14906 272 LKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEK 351 (583)
Q Consensus 272 i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
+++|+++. .....+..+.+|...|.+++|+| ++++|++++.|++|++||+.++.....+
T Consensus 85 v~iw~~~~--~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~------------------ 143 (345)
T 3fm0_A 85 TCIWKKNQ--DDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECV------------------ 143 (345)
T ss_dssp EEEEEECC--C-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEE------------------
T ss_pred EEEEEccC--CCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEE------------------
Confidence 99997653 24467788999999999999998 8999999999999999998765321110
Q ss_pred cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe
Q psy14906 352 MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY 431 (583)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 431 (583)
.....|...+.+++|+|++++|++++
T Consensus 144 ------------------------------------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s 169 (345)
T 3fm0_A 144 ------------------------------------------------------SVLNSHTQDVKHVVWHPSQELLASAS 169 (345)
T ss_dssp ------------------------------------------------------EEECCCCSCEEEEEECSSSSCEEEEE
T ss_pred ------------------------------------------------------EEecCcCCCeEEEEECCCCCEEEEEe
Confidence 00112236799999999999999999
Q ss_pred cCceEEEEEcccCcc--ccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCC-------------ce
Q psy14906 432 SSGHVDRFNIQSGAH--RGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKP-------------PL 496 (583)
Q Consensus 432 ~dg~i~i~d~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~ 496 (583)
.|+.|++||..++.. ...+ .+|...|++++|+|++++|++++.|++|++|+....... ++
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATL-----EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEe-----cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 999999999987753 3455 789999999999999999999999999999997543111 11
Q ss_pred EEee--ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccc---------eEEeecccccceeeEEecCCC-cEEEEEeC
Q psy14906 497 RSIK--LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCT---------IIRKLSGHMGQLTDADFSPDS-RWLITASM 564 (583)
Q Consensus 497 ~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~ 564 (583)
..+. +...|.+++|+|++..|++++.|+.|++|+...+. ......+|...|++++|+|++ .+||+++.
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence 1222 45689999999999999999999999999987542 122346899999999999998 59999999
Q ss_pred CCeEEEEeCCCccccccc
Q psy14906 565 DCTIRVWDIPSSQLIDCF 582 (583)
Q Consensus 565 d~~i~vw~~~~~~~~~~~ 582 (583)
||+|++|++.+++.+..+
T Consensus 325 Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 325 DGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TSCEEEEEECC-------
T ss_pred CCcEEEEEecCCCCcccc
Confidence 999999999998876543
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-45 Score=352.55 Aligned_cols=315 Identities=17% Similarity=0.272 Sum_probs=265.7
Q ss_pred eEEEEec-cceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEe
Q psy14906 93 IIYAWRR-GIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLE 169 (583)
Q Consensus 93 ~i~vw~~-~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 169 (583)
.+..|+. +....++|.+|.+.|+++ +|++++|++|+.||+|++||+.+++....+. .|...|.+++
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-----------~h~~~v~~~~ 115 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-----------LHCPWVMECA 115 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-----------CCCTTCCCCE
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-----------cCCCCEEEEE
Confidence 3445554 446678899999999997 9999999999999999999999999999988 8999999999
Q ss_pred eCCCCCEEEEEecCCeEEEEEccCCc-------eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh
Q psy14906 170 PSPVVDIIGVGLSNKKIILHNILTDE-------SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242 (583)
Q Consensus 170 ~s~~~~~l~~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 242 (583)
|+|++++|++|+.|+.+++||+.+.. ....+.+|.+.|.++.|.|++...|++|+.|++|++||+.+++.+..
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999987532 34567799999999999998665799999999999999999887654
Q ss_pred h----hhccccceEEEEEec-CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCC
Q psy14906 243 I----KKAHRKVVTGAHFLY-NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDS 317 (583)
Q Consensus 243 ~----~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 317 (583)
+ ..+|...|.+++|++ ++++|++|+.|+.|++||+.. ....+..+.+|...|.+++|+| ++++|++++.||
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~ 271 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDG 271 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT---TCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSS
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC---CCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCC
Confidence 3 257899999999987 889999999999999997753 2456778899999999999998 899999999999
Q ss_pred cEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccc
Q psy14906 318 TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKM 397 (583)
Q Consensus 318 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 397 (583)
+|++||++++.....+.... .
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~---------------------------------------------------------~-- 292 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREP---------------------------------------------------------D-- 292 (380)
T ss_dssp CEEEEETTTTEEEEEECCCC---------------------------------------------------------S--
T ss_pred eEEEEECCCCcEEEEecccc---------------------------------------------------------c--
Confidence 99999999876554331110 0
Q ss_pred cceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEe
Q psy14906 398 DDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISG 477 (583)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 477 (583)
....+...+++++|+|+|+++++|+.||.|++||+.+++....+... ..+|.+.|++++|+|++++|++|
T Consensus 293 ---------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 293 ---------RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-QNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp ---------SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS-CSSCCCCCCEEEECSSSSEEEEE
T ss_pred ---------ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc-cCCCCCceEEEEECCCCCEEEEe
Confidence 00001135889999999999999999999999999988876655221 14799999999999999999999
Q ss_pred ecCCcEEEEEccCC
Q psy14906 478 GNDQTVKVWHFKQT 491 (583)
Q Consensus 478 ~~dg~i~iwd~~~~ 491 (583)
+.|++|++|++...
T Consensus 363 s~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 363 SWDKNLKIWAFSGH 376 (380)
T ss_dssp CTTSCEEEEECCSS
T ss_pred eCCCCEEEEecCCC
Confidence 99999999999865
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-44 Score=334.18 Aligned_cols=292 Identities=17% Similarity=0.285 Sum_probs=253.8
Q ss_pred eeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEE
Q psy14906 102 DIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGV 179 (583)
Q Consensus 102 ~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 179 (583)
+..++|.+|.+.|.++ +|++++|++++.||+|++||+.+++.+..+. .|..+|.+++|+|++++|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~s 72 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-----------VTETPVRAGKFIARKNWIIV 72 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----------CCSSCEEEEEEEGGGTEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-----------ccCCcEEEEEEeCCCCEEEE
Confidence 4567899999999997 9999999999999999999999999999887 88999999999999999999
Q ss_pred EecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC-eehhhhhhccccceEEEEEec
Q psy14906 180 GLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR-QVENQIKKAHRKVVTGAHFLY 258 (583)
Q Consensus 180 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~ 258 (583)
|+.|++|++||+.+++.+..+.+|...|.+++|+|+++ +|++|+.|++|++||++++ .+...+ .+|...|.+++|+|
T Consensus 73 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~-~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNP 150 (304)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEE-CCCCSCEEEEEECT
T ss_pred ECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhh-cccCCcEEEEEECC
Confidence 99999999999999999999999999999999999999 8999999999999999877 444555 78999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEee-CCCCEEEEeeCCCcEEEEEccccccceeeccc
Q psy14906 259 -NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYG-NSSDNILSAAGDSTLRIFNTKSETSNKNLGIA 336 (583)
Q Consensus 259 -~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 336 (583)
++.+|++++.|+.|++||+... ........+|...+..+.|+| .++.+|++++.|++|++||++++++...+.
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-- 225 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-- 225 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCS---SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred CCCCEEEEEeCCCeEEEEECCCC---CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC--
Confidence 6789999999999999977532 222333456678899999986 357799999999999999998876544331
Q ss_pred hhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCce
Q psy14906 337 SANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPT 416 (583)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 416 (583)
.|...+.
T Consensus 226 -------------------------------------------------------------------------~h~~~v~ 232 (304)
T 2ynn_A 226 -------------------------------------------------------------------------GHMSNVS 232 (304)
T ss_dssp -------------------------------------------------------------------------CCSSCEE
T ss_pred -------------------------------------------------------------------------CCCCCEE
Confidence 1226789
Q ss_pred EEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc--EEEEeecCCcEEEEEccC
Q psy14906 417 CVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ--IVISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 417 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~ 490 (583)
+++|+|++++|++|+.||.|++||+.+++....+ ..|...+.+++|+|++. ++++++.| .+.+|++..
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-----NVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-----CCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeec-----cCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 9999999999999999999999999999999888 78899999999999875 57777655 477887764
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=344.24 Aligned_cols=290 Identities=16% Similarity=0.130 Sum_probs=238.5
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccC-----------CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCc
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILT-----------DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGH 228 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 228 (583)
.+...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+|++ .|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCE
Confidence 5678899999999999999887 66778876321 01112223445789999999986 5889999999
Q ss_pred EEEEeCCCCeehhhh---hhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeC
Q psy14906 229 LTVWNLEDRQVENQI---KKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305 (583)
Q Consensus 229 i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 305 (583)
|++||+++++.+... ..+|.+.|++++|+|++++|++++.|++|++||+. .++.+..+.+|...|.+++|+|.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~----~~~~~~~~~~h~~~V~~~~~~~~ 180 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA----QQVVLSSYRAHAAQVTCVAASPH 180 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECSS
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCcCCceEEEEecCC
Confidence 999999988765433 14799999999999999999999999999999775 57888999999999999999985
Q ss_pred CCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCc
Q psy14906 306 SSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKN 385 (583)
Q Consensus 306 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (583)
+..+|++++.|++|++||+++++....+...
T Consensus 181 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------------------------------------------------- 211 (344)
T 4gqb_B 181 KDSVFLSCSEDNRILLWDTRCPKPASQIGCS------------------------------------------------- 211 (344)
T ss_dssp CTTEEEEEETTSCEEEEETTSSSCEEECC---------------------------------------------------
T ss_pred CCCceeeeccccccccccccccceeeeeecc-------------------------------------------------
Confidence 5568899999999999999987765443110
Q ss_pred eEEEeecCcccccceeeecccccccCCCCceEEEEccC-CcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeE
Q psy14906 386 KVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC-GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRG 464 (583)
Q Consensus 386 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~ 464 (583)
.+...+.+++|+|+ ++++++|+.||.|++||+++++.+..+ .+|...|++
T Consensus 212 ------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-----~~h~~~v~~ 262 (344)
T 4gqb_B 212 ------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-----AVHSQCVTG 262 (344)
T ss_dssp --------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE-----ECCSSCEEE
T ss_pred ------------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE-----cCCCCCEEE
Confidence 01145789999995 578899999999999999999999888 799999999
Q ss_pred EEEeCCC-cEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCc-EEEEEeCCceEEEEEccccce
Q psy14906 465 VVSDNLN-QIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESS-MLAVCLDDFTVNIIDIDTCTI 536 (583)
Q Consensus 465 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~ 536 (583)
++|+|++ ++|++++.|++|+|||+.++ ++.....|.+.|.+++|+|+++ +|++++.|++|++|++.+...
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~~--~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSLS--ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTCC--EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCC--cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9999998 58999999999999999987 7776667778999999999987 577899999999999987543
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.9e-45 Score=344.23 Aligned_cols=320 Identities=15% Similarity=0.173 Sum_probs=237.3
Q ss_pred EeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcC------CCcEEEEeCCCCeehh
Q psy14906 168 LEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSN------TGHLTVWNLEDRQVEN 241 (583)
Q Consensus 168 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~ 241 (583)
+.+.+++.++. +..+.....|++.... ...|...|++++|+|||+ +|++++. |+.+++|+..++....
T Consensus 11 ~d~g~~~~~~~-~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 11 VDLGTENLYFQ-SNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCccceEEe-cCCCccccccCCCCCC----cccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 44445554444 4445677889876433 347889999999999999 8999987 7789999998876544
Q ss_pred hhh---hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCc
Q psy14906 242 QIK---KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDST 318 (583)
Q Consensus 242 ~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 318 (583)
.+. .+|...|.+++|+|++. +++++.||+|++||+..............+|...|.+++|+| ++++|++++.|+.
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~ 162 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFS 162 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCe
Confidence 431 46888999999999986 556778999999977643322223345568999999999998 8999999999999
Q ss_pred EEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccccc
Q psy14906 319 LRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMD 398 (583)
Q Consensus 319 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 398 (583)
|++||+.+++....+.
T Consensus 163 v~iwd~~~~~~~~~~~---------------------------------------------------------------- 178 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYN---------------------------------------------------------------- 178 (357)
T ss_dssp EEEEETTTTEEEEEEC----------------------------------------------------------------
T ss_pred EEEEECCCCcEEEEEc----------------------------------------------------------------
Confidence 9999998876544331
Q ss_pred ceeeecccccccCCCCceEEEEccCCc-EEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCC-cEEEE
Q psy14906 399 DMFLVPERCKQAKQSKPTCVYITHCGN-FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLN-QIVIS 476 (583)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s 476 (583)
.|...+.+++|+|++. ++++++.||.|++||+++++....+.. ..|...+.+++|+|++ .+|++
T Consensus 179 -----------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 179 -----------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp -----------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTCCSCEEEEEECTTSTTEEEE
T ss_pred -----------CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccccccccchhhhhcccceEEE
Confidence 1226799999999875 788999999999999999887766532 4678889999999974 68899
Q ss_pred eecCCcEEEEEccCCCCCceEEeec-cCCeeeEEeccCC-cEEEEEeCCceEEEEEccccceEEeecccccceeeEEecC
Q psy14906 477 GGNDQTVKVWHFKQTGKPPLRSIKL-DNGISFFRTHQES-SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSP 554 (583)
Q Consensus 477 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~ 554 (583)
++.|+.|++||+.++ +++..+.. ...|++++|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++++|+|
T Consensus 245 g~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 245 GDETGNVSLVNIKNP--DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp EESSSCEEEEESSCG--GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred eecccceeEEECCCC--cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 999999999999988 77777764 4689999999987 58999999999999999999887665 7999999999998
Q ss_pred -CCcEEEEEeCCCeEEEEeCCCc
Q psy14906 555 -DSRWLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 555 -d~~~l~s~~~d~~i~vw~~~~~ 576 (583)
|+++|+|++.|++|++|++.+.
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCC
Confidence 8999999999999999999764
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-44 Score=334.89 Aligned_cols=294 Identities=15% Similarity=0.226 Sum_probs=251.5
Q ss_pred eeeeeecccCccEEEE--ccCC-CEEEEEeCCCcEEEEEcCCC-----cEEEEeeccCCceEEecccCCcceEEEeeCCC
Q psy14906 102 DIVGTYKGHTSPVHLI--LPFG-PHLISVDEESNVKVWDIKAE-----ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPV 173 (583)
Q Consensus 102 ~~~~~~~~h~~~v~~i--s~~~-~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 173 (583)
.+..+|++|.++|+++ +|++ ++|++++.|++|++|++.+. ..+..+. +|...|.+++|+|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-----------~h~~~v~~~~~s~d 76 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----------GHSHIVQDCTLTAD 76 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-----------CCSSCEEEEEECTT
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-----------CCcccEEEEEECCC
Confidence 3456789999999997 6755 89999999999999998652 3455565 99999999999999
Q ss_pred CCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEE
Q psy14906 174 VDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTG 253 (583)
Q Consensus 174 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 253 (583)
+++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++. +|++|+.|++|++||++ ++.+..+ .+|...|.+
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~-~~~~~~~-~~h~~~v~~ 153 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQ 153 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC-CCeEEEE-eccCCcEEE
Confidence 99999999999999999999999999999999999999999998 99999999999999997 4556666 689999999
Q ss_pred EEEecC------CCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEcccc
Q psy14906 254 AHFLYN------EPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSE 327 (583)
Q Consensus 254 ~~~~~~------~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 327 (583)
+.|+|. +..|++++.|+.|++||+. ..+....+.+|...|.+++|+| ++++|++++.||.|++||+.++
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp EEECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT
T ss_pred EEEccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Confidence 999985 4589999999999999775 4567788899999999999998 8999999999999999999887
Q ss_pred ccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccc
Q psy14906 328 TSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERC 407 (583)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 407 (583)
+....+..
T Consensus 229 ~~~~~~~~------------------------------------------------------------------------ 236 (319)
T 3frx_A 229 KAMYTLSA------------------------------------------------------------------------ 236 (319)
T ss_dssp EEEEEEEC------------------------------------------------------------------------
T ss_pred cEEEEecC------------------------------------------------------------------------
Confidence 65443211
Q ss_pred cccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCC---CCCCcccCeeEEEEeCCCcEEEEeecCCcEE
Q psy14906 408 KQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHD---NQPGHVGGVRGVVSDNLNQIVISGGNDQTVK 484 (583)
Q Consensus 408 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 484 (583)
...+.+++|+|++.+++++..++ +++|++..+.....+... ....|...+.+++|+|+|++|++++.||.|+
T Consensus 237 ----~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 237 ----QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp ----CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ----CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 14688999999999999988665 999999877655544211 0134677899999999999999999999999
Q ss_pred EEEccCC
Q psy14906 485 VWHFKQT 491 (583)
Q Consensus 485 iwd~~~~ 491 (583)
+||+.+.
T Consensus 312 vWd~~t~ 318 (319)
T 3frx_A 312 VWQVMTA 318 (319)
T ss_dssp EEEEEEC
T ss_pred EEEEeec
Confidence 9999764
No 32
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-44 Score=338.80 Aligned_cols=318 Identities=14% Similarity=0.211 Sum_probs=252.1
Q ss_pred eeeeeecccCc-cEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEE
Q psy14906 102 DIVGTYKGHTS-PVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIG 178 (583)
Q Consensus 102 ~~~~~~~~h~~-~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 178 (583)
.++.++.+|.. .|.++ +|+|++||+++.|++|+|||+.++......... .+|...|.+++|+|++++|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~--------~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS--------EGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC--------SSCSSCEEEEEECTTSSEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec--------cccCCcEEEEEECCCCCEEE
Confidence 46778899988 88876 999999999999999999999987654332211 18999999999999999999
Q ss_pred EEecCCeEEEEEccCC--ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe---ehhhhhhccccceEE
Q psy14906 179 VGLSNKKIILHNILTD--ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ---VENQIKKAHRKVVTG 253 (583)
Q Consensus 179 ~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~ 253 (583)
+|+.|++|++|++.++ +.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ++..+ .+|...|.+
T Consensus 78 s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~ 155 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKH 155 (345)
T ss_dssp EEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEE-CCCCSCEEE
T ss_pred EEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEe-cCcCCCeEE
Confidence 9999999999999876 45778899999999999999999 99999999999999998753 34555 689999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceee
Q psy14906 254 AHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 254 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 333 (583)
++|+|++++|++++.|+.|++|++... .......+.+|...|.+++|+| ++++|++++.|++|++||.........+
T Consensus 156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~--~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 156 VVWHPSQELLASASYDDTVKLYREEED--DWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp EEECSSSSCEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEecCC--CEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccc
Confidence 999999999999999999999976532 3345678899999999999998 8999999999999999997543221111
Q ss_pred ccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCC
Q psy14906 334 GIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQS 413 (583)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (583)
.. ...+.... ........+..
T Consensus 233 ~~---------------------------------------------~~~~~~~~--------------~~~~~~~~h~~ 253 (345)
T 3fm0_A 233 AC---------------------------------------------SGSDPSWK--------------CICTLSGFHSR 253 (345)
T ss_dssp CC---------------------------------------------C---CEEE--------------EEEEECSSCSS
T ss_pred ee---------------------------------------------eccCCccc--------------eeEEecCCCCC
Confidence 00 00000000 00011112336
Q ss_pred CceEEEEccCCcEEEEEecCceEEEEEcccCccccc----cCCCCCCCcccCeeEEEEeCCC-cEEEEeecCCcEEEEEc
Q psy14906 414 KPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGS----YGHDNQPGHVGGVRGVVSDNLN-QIVISGGNDQTVKVWHF 488 (583)
Q Consensus 414 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~ 488 (583)
.+.+++|+|++..+++++.|+.|++|+...+..... +......+|...|++++|+|++ .+|++++.||+|++|++
T Consensus 254 ~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 254 TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 799999999999999999999999999876532111 0000115899999999999998 49999999999999999
Q ss_pred cCC
Q psy14906 489 KQT 491 (583)
Q Consensus 489 ~~~ 491 (583)
.+.
T Consensus 334 ~~~ 336 (345)
T 3fm0_A 334 QRP 336 (345)
T ss_dssp CC-
T ss_pred cCC
Confidence 887
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.8e-45 Score=355.01 Aligned_cols=339 Identities=14% Similarity=0.183 Sum_probs=283.4
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCc
Q psy14906 116 LILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDE 195 (583)
Q Consensus 116 ~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~ 195 (583)
+++|++++|++++.||.|++||+.+++....+. .+ ..+....|+|++++|++|+.||.|++||+.+++
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-----------RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTSC-----------SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEEe-----------cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc
Confidence 459999999999999999999998876544443 33 455566789999999999999999999999999
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy14906 196 SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275 (583)
Q Consensus 196 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w 275 (583)
....+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++|
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeeecccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 9888889999999999999999 9999999999999999999998888 7999999999999999999999999999999
Q ss_pred EccCCCCCceeeEEecc---CCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhcc
Q psy14906 276 IFDKADGNGRLLRIREG---HSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKM 352 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (583)
|+. ..+.+..+.. |...+.++++.|..... +..
T Consensus 209 d~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------~~~----------------------------- 244 (420)
T 3vl1_A 209 ECG----TGTTIHTFNRKENPHDGVNSIALFVGTDRQ-----------LHE----------------------------- 244 (420)
T ss_dssp ETT----TTEEEEEECBTTBTTCCEEEEEEEECCCSS-----------CGG-----------------------------
T ss_pred ECC----CCceeEEeecCCCCCCCccEEEEecCCcce-----------eee-----------------------------
Confidence 775 4566666664 56678888887632111 000
Q ss_pred ccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec
Q psy14906 353 NEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS 432 (583)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 432 (583)
.+...+.+++|+|+++++++|+.
T Consensus 245 ---------------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~ 267 (420)
T 3vl1_A 245 ---------------------------------------------------------ISTSKKNNLEFGTYGKYVIAGHV 267 (420)
T ss_dssp ---------------------------------------------------------GCCCCCCTTCSSCTTEEEEEEET
T ss_pred ---------------------------------------------------------cccCcccceEEcCCCCEEEEEcC
Confidence 00146788899999999999999
Q ss_pred CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc-EEEEeecCCcEEEEEccCCCCCceEEee--ccCCeeeEE
Q psy14906 433 SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ-IVISGGNDQTVKVWHFKQTGKPPLRSIK--LDNGISFFR 509 (583)
Q Consensus 433 dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~ 509 (583)
||.|++||+.+++....+. ..|...|.+++|+|+++ +|++++.||.|++||+.+.. .++..+. +...+.++
T Consensus 268 dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~- 341 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLP----SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-CPVGEFLINEGTPINNV- 341 (420)
T ss_dssp TSCEEEEETTTCCEEEEEC----CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEEESTTSCEEEE-
T ss_pred CCeEEEEECCCCceeEEcc----cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-CchhhhhccCCCCceEE-
Confidence 9999999999988777763 46889999999999998 99999999999999999873 2344444 34567777
Q ss_pred eccCCcEEEEEeCCceEEEEEcccc---------ceEEeecccccceeeEEecCCCc---EEEEEeCCCeEEEEeCCC
Q psy14906 510 THQESSMLAVCLDDFTVNIIDIDTC---------TIIRKLSGHMGQLTDADFSPDSR---WLITASMDCTIRVWDIPS 575 (583)
Q Consensus 510 ~s~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~h~~~v~~l~~s~d~~---~l~s~~~d~~i~vw~~~~ 575 (583)
+.+++++|++++.|+.|++|++... .....+.+|...|.+++|+|+++ .|++++.+|.+.+|++++
T Consensus 342 ~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 342 YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 5568899999999999999998763 22234567889999999999999 777788899999999875
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-44 Score=341.82 Aligned_cols=325 Identities=12% Similarity=0.167 Sum_probs=279.8
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 239 (583)
.+..+|.+++|+|||++++++..++.+..|............+|...|.+++|+|+++ ++++++ ||.|++||+.+++.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCc
Confidence 3467899999999999999988888777776655555555558889999999999999 888888 99999999988764
Q ss_pred hhhhhh----ccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeC
Q psy14906 240 ENQIKK----AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315 (583)
Q Consensus 240 ~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 315 (583)
...+.. +|...|.+++|+|++++|++++.|+.|++|+++. ........+..|...+.+++|+| +++++++++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 161 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA--PTPRIKAELTSSAPACYALAISP-DSKVCFSCCS 161 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC--C--EEEEEEECSSSCEEEEEECT-TSSEEEEEET
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC--CCcceeeecccCCCceEEEEECC-CCCEEEEEeC
Confidence 444321 6889999999999999999999999999997653 23446677888999999999997 8999999999
Q ss_pred CCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcc
Q psy14906 316 DSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKS 395 (583)
Q Consensus 316 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 395 (583)
||.|++||+.+++....+.
T Consensus 162 dg~v~~~d~~~~~~~~~~~------------------------------------------------------------- 180 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQ------------------------------------------------------------- 180 (337)
T ss_dssp TSCEEEEETTTTEEEEEEC-------------------------------------------------------------
T ss_pred CCcEEEEeCCCCceeeeee-------------------------------------------------------------
Confidence 9999999998765433221
Q ss_pred cccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEE
Q psy14906 396 KMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVI 475 (583)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 475 (583)
.+...+.+++|+|+++++++++.||.|++||+.+++....+ .|...+.+++|+|++++|+
T Consensus 181 --------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 181 --------------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH------DFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp --------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------ECSSCEEEEEECTTSSEEE
T ss_pred --------------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee------cCCCceEEEEECCCCCEEE
Confidence 12257999999999999999999999999999999887776 5778899999999999999
Q ss_pred EeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCC
Q psy14906 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPD 555 (583)
Q Consensus 476 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 555 (583)
+++.|+.|++||+.+. +......+...+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|+
T Consensus 241 ~~~~~~~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 241 VGMESSNVEVLHVNKP--DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD 317 (337)
T ss_dssp EEETTSCEEEEETTSS--CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred EEcCCCcEEEEECCCC--CeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCC
Confidence 9999999999999987 66666667789999999999999999999999999999999888554 48899999999999
Q ss_pred CcEEEEEeCCCeEEEEeC
Q psy14906 556 SRWLITASMDCTIRVWDI 573 (583)
Q Consensus 556 ~~~l~s~~~d~~i~vw~~ 573 (583)
+++|++++.||.|++|++
T Consensus 318 ~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEETTSCEEEEEE
T ss_pred CCEEEEecCCCeEEEEEE
Confidence 999999999999999997
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-44 Score=339.60 Aligned_cols=295 Identities=16% Similarity=0.221 Sum_probs=242.9
Q ss_pred cCCcceEEEee-----CC-CCCEEEEEecCCeEEEEEccCC-------ceeEEEeccCCCeEEEEEecCCCCEEEEEcCC
Q psy14906 160 RWNSCVNVLEP-----SP-VVDIIGVGLSNKKIILHNILTD-------ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT 226 (583)
Q Consensus 160 ~~~~~i~~~~~-----s~-~~~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 226 (583)
+|...|++++| ++ ++++|++|+.|++|++||+.++ .+...+.+|...|.+++|+|++. ++++++.|
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~s~D 97 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-FAISSSWD 97 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT-EEEEEETT
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC-EEEEEcCC
Confidence 99999999999 76 9999999999999999999753 45677889999999999999998 89999999
Q ss_pred CcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEe---ccCCCCCeeEEEe
Q psy14906 227 GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIR---EGHSAPPNYIQFY 303 (583)
Q Consensus 227 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~---~~~~~~v~~~~~~ 303 (583)
++|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+. ....... .+|...|.+++|+
T Consensus 98 ~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-----~~~~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 98 KTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-----GECKFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp SEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-----SCEEEECCTTTSCSSCEEEEEEC
T ss_pred CcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-----CCceeeeecccCCCceeeeeeec
Confidence 99999999999998888 7999999999999999999999999999999764 1222222 3677888888888
Q ss_pred eCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecC
Q psy14906 304 GNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTG 383 (583)
Q Consensus 304 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (583)
| ++...
T Consensus 172 ~-~~~~~------------------------------------------------------------------------- 177 (343)
T 2xzm_R 172 P-IMKSA------------------------------------------------------------------------- 177 (343)
T ss_dssp C-CCCSC-------------------------------------------------------------------------
T ss_pred c-ccccc-------------------------------------------------------------------------
Confidence 6 33100
Q ss_pred CceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCee
Q psy14906 384 KNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVR 463 (583)
Q Consensus 384 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~ 463 (583)
..+.|.+.++++++.||.|++||. ..+....+ .+|...|.
T Consensus 178 ----------------------------------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~-----~~h~~~v~ 217 (343)
T 2xzm_R 178 ----------------------------------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF-----KAHESNVN 217 (343)
T ss_dssp ----------------------------------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEE-----ECCSSCEE
T ss_pred ----------------------------------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE-----cCccccce
Confidence 001234467777777777777773 33444444 68999999
Q ss_pred EEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEE--eec
Q psy14906 464 GVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIR--KLS 541 (583)
Q Consensus 464 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~ 541 (583)
+++|+|++++|++++.||.|++||+.... .....+.....|.+++|+|++++++++ .|+.|++||+.+++... .+.
T Consensus 218 ~~~~s~~g~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~ 295 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKDKKLLIWDILNLT-YPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIE 295 (343)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEESSCCS-SCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCc-ccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEee
Confidence 99999999999999999999999995432 455666667789999999999988765 57789999998776433 333
Q ss_pred -----------ccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCcc
Q psy14906 542 -----------GHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577 (583)
Q Consensus 542 -----------~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~ 577 (583)
+|...|.+++|+|+|++|++|+.||+|++|++++++
T Consensus 296 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred cCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 688899999999999999999999999999998764
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-44 Score=333.41 Aligned_cols=300 Identities=17% Similarity=0.233 Sum_probs=235.2
Q ss_pred CCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCC--ceeEEE-ec-cCCCeEEEEEecC
Q psy14906 140 AEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTD--ESLMEF-IQ-TWGPVTALSFRTD 215 (583)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~ 215 (583)
+.+++.++. +|...|.+++|+|+ +||+|+.|++|++||+.++ +.+..+ .+ |...|.+++|+|+
T Consensus 3 ~~~~~~~~~-----------~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 3 SINLIKSLK-----------LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp CCEEEEEEE-----------CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT
T ss_pred ccccceeec-----------cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC
Confidence 345666676 99999999999987 9999999999999999875 445555 34 8899999999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCC-------CeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeE
Q psy14906 216 GPPMMVSGSNTGHLTVWNLED-------RQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLR 288 (583)
Q Consensus 216 ~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 288 (583)
++ +|++++.|++|++||+.. .+++..+ .+|...|.+++|+|++++|++++.|++|++||++......+.+.
T Consensus 70 ~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 70 TS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp SS-EEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CC-EEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 98 999999999999999853 3455566 78999999999999999999999999999998754333456778
Q ss_pred EeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeec
Q psy14906 289 IREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGL 368 (583)
Q Consensus 289 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (583)
.+.+|...|.+++|+| ++.+|++++.|++|++||..++..
T Consensus 148 ~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~--------------------------------------- 187 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW--------------------------------------- 187 (330)
T ss_dssp EECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE---------------------------------------
T ss_pred EeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCe---------------------------------------
Confidence 8899999999999998 789999999999999999654210
Q ss_pred ccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcccc
Q psy14906 369 AREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG 448 (583)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 448 (583)
+.+.
T Consensus 188 ----------------------------------------------------------------------------~~~~ 191 (330)
T 2hes_X 188 ----------------------------------------------------------------------------ECVA 191 (330)
T ss_dssp ----------------------------------------------------------------------------EEEE
T ss_pred ----------------------------------------------------------------------------eEEE
Confidence 0111
Q ss_pred ccCCCCCCCcccCeeEEEEeCC--CcEEEEeecCCcEEEEEccCCCCC------ceEEee--ccCCeeeEEeccCCcEEE
Q psy14906 449 SYGHDNQPGHVGGVRGVVSDNL--NQIVISGGNDQTVKVWHFKQTGKP------PLRSIK--LDNGISFFRTHQESSMLA 518 (583)
Q Consensus 449 ~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~--~~~~v~~~~~s~~~~~l~ 518 (583)
.+ .+|...|.+++|+|+ +.+|++++.|++|++||+...... +...+. +...|.+++|++++ +|+
T Consensus 192 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 192 VL-----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp EE-----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred Ec-----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence 22 578888999999998 668899999999999998754211 122222 55789999999665 899
Q ss_pred EEeCCceEEEEEccccc--eEE-eeccccc-ceeeEEecC--CCcEEEEEeCCCeEEEEeCCCc
Q psy14906 519 VCLDDFTVNIIDIDTCT--IIR-KLSGHMG-QLTDADFSP--DSRWLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 519 ~~~~dg~i~i~d~~~~~--~~~-~~~~h~~-~v~~l~~s~--d~~~l~s~~~d~~i~vw~~~~~ 576 (583)
+++.||.|++||..+++ ... .+.+|.. .|.+++|+| ++++||+++.||+|++|++++.
T Consensus 266 s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 266 SVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred EEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 99999999999998774 333 3467887 899999999 7899999999999999998753
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-46 Score=361.51 Aligned_cols=336 Identities=12% Similarity=0.132 Sum_probs=277.5
Q ss_pred CcceEEEeeCCCCC-EEEEE----------ecCCeEEEEEccCCc---eeEEEeccCCCeEEEEEecCCCCEEEEEcCCC
Q psy14906 162 NSCVNVLEPSPVVD-IIGVG----------LSNKKIILHNILTDE---SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTG 227 (583)
Q Consensus 162 ~~~i~~~~~s~~~~-~l~~~----------~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 227 (583)
...|.+++|+|+++ +|+++ +.|+.|++||+.+++ .+..+ .|...|.+++|+|+++ +|++++.||
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg 89 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK-IIAGALDNG 89 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS-CEEEEESSS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC-eEEEEccCC
Confidence 34688899999987 99999 889999999998875 33333 5778999999999999 899999999
Q ss_pred cEEEEeCCC----CeehhhhhhccccceEEEEEecC-CCEEEEEeCCCeEEEEEccCCCC-----CceeeEEeccCCCCC
Q psy14906 228 HLTVWNLED----RQVENQIKKAHRKVVTGAHFLYN-EPLLVTSSPDNTLKLWIFDKADG-----NGRLLRIREGHSAPP 297 (583)
Q Consensus 228 ~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~-----~~~~~~~~~~~~~~v 297 (583)
.|++||+.+ .+.+..+ .+|...|.+++|+|+ +++|++++.|+.|++||+..... ..........|...|
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999987 3466677 789999999999998 89999999999999997754321 111223356789999
Q ss_pred eeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccE
Q psy14906 298 NYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNI 377 (583)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (583)
.+++|+|..+.+|++++.||.|++||+++++....+....
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------- 208 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS---------------------------------------- 208 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC----------------------------------------
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc----------------------------------------
Confidence 9999998447899999999999999998876544331100
Q ss_pred EEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCC-cEEEEEecCc---eEEEEEcccC-ccccccCC
Q psy14906 378 AAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCG-NFVLIGYSSG---HVDRFNIQSG-AHRGSYGH 452 (583)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~ 452 (583)
....+...+.+++|+|++ .++++++.++ .|++||+.++ .....+
T Consensus 209 -----------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~-- 257 (416)
T 2pm9_A 209 -----------------------------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL-- 257 (416)
T ss_dssp -----------------------------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC--
T ss_pred -----------------------------cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe--
Confidence 001112679999999997 6899999998 9999999986 455555
Q ss_pred CCCC-CcccCeeEEEEeC-CCcEEEEeecCCcEEEEEccCCCCCceEEeec-cCCeeeEEeccCC-cEEEEEeCCceEEE
Q psy14906 453 DNQP-GHVGGVRGVVSDN-LNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL-DNGISFFRTHQES-SMLAVCLDDFTVNI 528 (583)
Q Consensus 453 ~~~~-~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~i~i 528 (583)
. +|...|.+++|+| ++++|++++.||.|++||+.++ +++..+.. ...+.+++|+|++ ++|++++.|+.|++
T Consensus 258 ---~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 258 ---NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp ---CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred ---ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEE
Confidence 5 8999999999999 9999999999999999999988 77777764 5689999999999 89999999999999
Q ss_pred EEccccceEEeec-----------------------------------ccccceeeEEecCCCcEEEEEeCCCeEEEEeC
Q psy14906 529 IDIDTCTIIRKLS-----------------------------------GHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573 (583)
Q Consensus 529 ~d~~~~~~~~~~~-----------------------------------~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~ 573 (583)
||+.+++...... .|..++.+++|+|||++|++++.|+.|+||++
T Consensus 333 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 333 QTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp EESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred EEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 9998765432221 16778889999999999999999999999999
Q ss_pred CCc
Q psy14906 574 PSS 576 (583)
Q Consensus 574 ~~~ 576 (583)
.+.
T Consensus 413 ~~~ 415 (416)
T 2pm9_A 413 KIS 415 (416)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-44 Score=350.75 Aligned_cols=347 Identities=15% Similarity=0.091 Sum_probs=279.7
Q ss_pred eEEEEeccce-eeeeecccCccEEEE--ccCCC-EEEEEeCCCcEEEEEc----CCCc------EEEEeeccCCceEEec
Q psy14906 93 IIYAWRRGID-IVGTYKGHTSPVHLI--LPFGP-HLISVDEESNVKVWDI----KAEE------TYLELSFDNDTFKIMG 158 (583)
Q Consensus 93 ~i~vw~~~~~-~~~~~~~h~~~v~~i--s~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~~~~~~~~~~ 158 (583)
.+.+|+.+.. .......|.++|+++ +|+++ +||+++.||.|++||+ .+++ ....+........ ..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 104 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA-SS 104 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc-cc
Confidence 4567776432 222334566889987 99999 9999999999999999 8887 3444431110000 00
Q ss_pred ccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe
Q psy14906 159 KRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ 238 (583)
Q Consensus 159 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 238 (583)
.+|...|.+++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+|+++ +|++++.|+.|++||+.+++
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCc
Confidence 12678999999999999999999999999999 67889999999999999999999999 89999999999999999998
Q ss_pred ehhhhhhccccc---------------eEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEe
Q psy14906 239 VENQIKKAHRKV---------------VTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFY 303 (583)
Q Consensus 239 ~~~~~~~~~~~~---------------v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 303 (583)
.+..+ ..+... +.+++|+|++ .+++++.++.|++|++. ....+..+..|...|.+++|+
T Consensus 183 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 183 VMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT----EKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp EEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT----CSSCSEEECCCSSCEEEEEEE
T ss_pred EEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC----CCceeeeeccCCCceEEEEEC
Confidence 88877 566655 9999999985 58888999999999775 346667788899999999999
Q ss_pred eCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecC
Q psy14906 304 GNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTG 383 (583)
Q Consensus 304 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (583)
| ++++|++++.|+.|++||+.+++....+.
T Consensus 257 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------------------------------------------- 286 (425)
T 1r5m_A 257 D-TNKLLLSASDDGTLRIWHGGNGNSQNCFY------------------------------------------------- 286 (425)
T ss_dssp T-TTTEEEEEETTSCEEEECSSSBSCSEEEC-------------------------------------------------
T ss_pred C-CCCEEEEEcCCCEEEEEECCCCccceEec-------------------------------------------------
Confidence 7 78999999999999999998765543321
Q ss_pred CceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCee
Q psy14906 384 KNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVR 463 (583)
Q Consensus 384 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~ 463 (583)
.+...+.+++|+|++ ++++++.||.|++||+.+++....+ ..|...|.
T Consensus 287 --------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~i~ 334 (425)
T 1r5m_A 287 --------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-----IVDGVPIF 334 (425)
T ss_dssp --------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-----ECTTCCEE
T ss_pred --------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-----ccCCccEE
Confidence 112578999999999 9999999999999999999988887 68899999
Q ss_pred EEEEeCCCcEEEEeecCCcEEEEEccCCCCC--------------------ceEEeecc--C-CeeeEEeccCCcEEEEE
Q psy14906 464 GVVSDNLNQIVISGGNDQTVKVWHFKQTGKP--------------------PLRSIKLD--N-GISFFRTHQESSMLAVC 520 (583)
Q Consensus 464 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------~~~~~~~~--~-~v~~~~~s~~~~~l~~~ 520 (583)
+++|+|++++|++++.||.|++||+.+. . ++..+..+ . .|.+++|+|++++|+++
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKL--NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHH--HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC--ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999999999999999999999876 4 56666655 4 89999999999999999
Q ss_pred eCCceEEEEEcc
Q psy14906 521 LDDFTVNIIDID 532 (583)
Q Consensus 521 ~~dg~i~i~d~~ 532 (583)
+.||.|++||++
T Consensus 413 ~~dg~i~iw~~~ 424 (425)
T 1r5m_A 413 YSLQEGSVVAIP 424 (425)
T ss_dssp ESSSCCEEEECC
T ss_pred ecCceEEEEeec
Confidence 999999999985
No 39
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-44 Score=334.99 Aligned_cols=304 Identities=14% Similarity=0.165 Sum_probs=233.7
Q ss_pred EEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe-------e---hhhhhhccccceEEEE
Q psy14906 186 IILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ-------V---ENQIKKAHRKVVTGAH 255 (583)
Q Consensus 186 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~---~~~~~~~~~~~v~~~~ 255 (583)
.+.|++....+ ..+...|.+++|+|||+ +|++++ |+++++||..... . .......|...|.+++
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 89 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLT 89 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEE
Confidence 35677654433 24557799999999999 777776 7788888732110 0 0011124567899999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeecc
Q psy14906 256 FLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGI 335 (583)
Q Consensus 256 ~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 335 (583)
|+|++ .|++++.||+|++||++...........+.+|...|.+++|+| ++++|++++.|++|++||+.+++....+
T Consensus 90 ~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~-- 165 (344)
T 4gqb_B 90 WVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSY-- 165 (344)
T ss_dssp EETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred EeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEE--
Confidence 99985 6889999999999988644322233345668999999999997 8999999999999999999887655433
Q ss_pred chhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCc
Q psy14906 336 ASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKP 415 (583)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 415 (583)
..|...|
T Consensus 166 -------------------------------------------------------------------------~~h~~~V 172 (344)
T 4gqb_B 166 -------------------------------------------------------------------------RAHAAQV 172 (344)
T ss_dssp -------------------------------------------------------------------------CCCSSCE
T ss_pred -------------------------------------------------------------------------cCcCCce
Confidence 1123679
Q ss_pred eEEEEccCCc-EEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCC-CcEEEEeecCCcEEEEEccCCCC
Q psy14906 416 TCVYITHCGN-FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNL-NQIVISGGNDQTVKVWHFKQTGK 493 (583)
Q Consensus 416 ~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~ 493 (583)
.+++|+|++. ++++++.|+.|++||+++++....+.. ..|...+.+++|+|+ +++|++|+.||.|++||++++
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-- 247 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-- 247 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeec---ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--
Confidence 9999999984 788999999999999999988877633 356678999999995 568899999999999999988
Q ss_pred CceEEeec-cCCeeeEEeccCC-cEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCc-EEEEEeCCCeEEE
Q psy14906 494 PPLRSIKL-DNGISFFRTHQES-SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSR-WLITASMDCTIRV 570 (583)
Q Consensus 494 ~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~d~~i~v 570 (583)
+++..+.. ...|.+++|+|++ ++||+|+.|++|+|||+.+++++ .+.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 248 ~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 248 SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp -CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 77777764 5789999999998 58999999999999999988765 5789999999999999986 5779999999999
Q ss_pred EeCCCccc
Q psy14906 571 WDIPSSQL 578 (583)
Q Consensus 571 w~~~~~~~ 578 (583)
|++.+..+
T Consensus 327 w~v~~~~~ 334 (344)
T 4gqb_B 327 HVVPTEPL 334 (344)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 99987643
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-43 Score=332.88 Aligned_cols=296 Identities=19% Similarity=0.246 Sum_probs=246.0
Q ss_pred ceeeeeecccCccEEEE-------cc-CCCEEEEEeCCCcEEEEEcCCC-------cEEEEeeccCCceEEecccCCcce
Q psy14906 101 IDIVGTYKGHTSPVHLI-------LP-FGPHLISVDEESNVKVWDIKAE-------ETYLELSFDNDTFKIMGKRWNSCV 165 (583)
Q Consensus 101 ~~~~~~~~~h~~~v~~i-------s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i 165 (583)
.+....+++|.+.|+++ ++ ++++|++|+.|++|++||+.++ .....+. +|...|
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-----------~h~~~V 79 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-----------GHNHFV 79 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-----------CCSSCE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-----------cCCCce
Confidence 35667889999999997 34 8999999999999999999754 3445555 899999
Q ss_pred EEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh-hh
Q psy14906 166 NVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ-IK 244 (583)
Q Consensus 166 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~ 244 (583)
.+++|+|++.+|++|+.|++|++||+++++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+........ ..
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~ 158 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEK 158 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecc
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999984432211 11
Q ss_pred hccccceEEEEEecCC----------CEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee
Q psy14906 245 KAHRKVVTGAHFLYNE----------PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA 314 (583)
Q Consensus 245 ~~~~~~v~~~~~~~~~----------~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 314 (583)
.+|...|.+++|+|++ .+|++++.|+.|++||. .......+.+|...|.+++|+| ++++|++++
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs 232 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISP-NGKYIATGG 232 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECC-CCCEEEEEc
Confidence 4788999999999987 78999999999999973 4566778889999999999997 899999999
Q ss_pred CCCcEEEEEcccccc-ceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecC
Q psy14906 315 GDSTLRIFNTKSETS-NKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFY 393 (583)
Q Consensus 315 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 393 (583)
.||.|++||+..... ...+.
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~~----------------------------------------------------------- 253 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREFD----------------------------------------------------------- 253 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEEE-----------------------------------------------------------
T ss_pred CCCeEEEEECCCCcccceeec-----------------------------------------------------------
Confidence 999999999853221 11100
Q ss_pred cccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcccc--ccCCC------CCCCcccCeeEE
Q psy14906 394 KSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG--SYGHD------NQPGHVGGVRGV 465 (583)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~------~~~~h~~~v~~~ 465 (583)
+...+.+++|+|++++++++ .|+.|++|++.+++... .+... ...+|...|.++
T Consensus 254 -----------------~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 254 -----------------AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp -----------------CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred -----------------CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 01458999999999988766 57779999998776544 22110 113788899999
Q ss_pred EEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 466 VSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 466 ~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
+|+|++++|++|+.||.|++|+++++
T Consensus 316 ~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EECCCCCeEEEecCCceEEEEEEEcc
Confidence 99999999999999999999998764
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-43 Score=327.50 Aligned_cols=285 Identities=20% Similarity=0.295 Sum_probs=248.1
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 239 (583)
+|...|.+++|+|++++|++++.||.|++|++.+++....+.+|...|.+++|+|+++ +|++++.|+.|++||+++++.
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCC-EEEEECCCCEEEEEECCCCcE
Confidence 8999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcE
Q psy14906 240 ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTL 319 (583)
Q Consensus 240 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 319 (583)
+..+ .+|...|.+++|+|++++|++++.|+.|++||+. ..+.+..+..|..+|.+++|+| ++++|++++.||.|
T Consensus 100 ~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 173 (312)
T 4ery_A 100 LKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLC 173 (312)
T ss_dssp EEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----CCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcE
Confidence 8888 7899999999999999999999999999999775 4567778888888999999987 78889999999999
Q ss_pred EEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccc
Q psy14906 320 RIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDD 399 (583)
Q Consensus 320 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (583)
++||+.+++....
T Consensus 174 ~~wd~~~~~~~~~------------------------------------------------------------------- 186 (312)
T 4ery_A 174 RIWDTASGQCLKT------------------------------------------------------------------- 186 (312)
T ss_dssp EEEETTTCCEEEE-------------------------------------------------------------------
T ss_pred EEEECCCCceeeE-------------------------------------------------------------------
Confidence 9998765432111
Q ss_pred eeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec
Q psy14906 400 MFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN 479 (583)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 479 (583)
+. ..+...+..++|+|++++|++++.
T Consensus 187 --------------------------------------------------~~----~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 187 --------------------------------------------------LI----DDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp --------------------------------------------------EC----CSSCCCEEEEEECTTSSEEEEEET
T ss_pred --------------------------------------------------Ee----ccCCCceEEEEECCCCCEEEEEcC
Confidence 10 245567888899999999999999
Q ss_pred CCcEEEEEccCCCCCceEEeeccC-C---eeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCC
Q psy14906 480 DQTVKVWHFKQTGKPPLRSIKLDN-G---ISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPD 555 (583)
Q Consensus 480 dg~i~iwd~~~~~~~~~~~~~~~~-~---v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 555 (583)
|+.|++||+.++ +++..+..+. . +......+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 213 d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 213 DNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290 (312)
T ss_dssp TTEEEEEETTTT--EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred CCeEEEEECCCC--cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence 999999998877 6666665432 2 222333467889999999999999999999999999999999999999999
Q ss_pred CcEEEEEe--CCCeEEEEeCC
Q psy14906 556 SRWLITAS--MDCTIRVWDIP 574 (583)
Q Consensus 556 ~~~l~s~~--~d~~i~vw~~~ 574 (583)
+++|++++ .|++|++|+.+
T Consensus 291 ~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 291 ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSEEEEEECTTTCCEEEEECC
T ss_pred CCceEEEEccCCccEEEecCC
Confidence 99999987 69999999964
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-44 Score=337.85 Aligned_cols=320 Identities=12% Similarity=0.160 Sum_probs=275.6
Q ss_pred cCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEE
Q psy14906 110 HTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKII 187 (583)
Q Consensus 110 h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 187 (583)
|.++|.++ +|||++++++..++.+..|+........... .|...|.+++|+|++++|++++ ||.|+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~~~l~~~~-dg~i~ 75 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-----------NHGEVVCAVTISNPTRHVYTGG-KGCVK 75 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-----------CCSSCCCEEEECSSSSEEEEEC-BSEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceec-----------cCCCceEEEEEecCCcEEEEcC-CCeEE
Confidence 34455554 9999999998888877777666554444444 8899999999999999999998 99999
Q ss_pred EEEccCCce---eEEEe--ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe--ehhhhhhccccceEEEEEecCC
Q psy14906 188 LHNILTDES---LMEFI--QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ--VENQIKKAHRKVVTGAHFLYNE 260 (583)
Q Consensus 188 iw~~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 260 (583)
+||+.+++. +..+. .|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+ ..|...|.+++|+|++
T Consensus 76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDS 153 (337)
T ss_dssp EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTS
T ss_pred EEECCCCCceeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeec-ccCCCceEEEEECCCC
Confidence 999987653 33333 7889999999999998 89999999999999999876 45555 6789999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhh
Q psy14906 261 PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANR 340 (583)
Q Consensus 261 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 340 (583)
++|++++.|+.|++|++. ..+.+..+..|...+.+++|+| ++++|++++.||.|++||+++++....+.
T Consensus 154 ~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------ 222 (337)
T 1gxr_A 154 KVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD------ 222 (337)
T ss_dssp SEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE------
T ss_pred CEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec------
Confidence 999999999999999775 4677888889999999999997 79999999999999999998765433221
Q ss_pred hhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEE
Q psy14906 341 NNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYI 420 (583)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 420 (583)
+...+.+++|
T Consensus 223 ----------------------------------------------------------------------~~~~v~~~~~ 232 (337)
T 1gxr_A 223 ----------------------------------------------------------------------FTSQIFSLGY 232 (337)
T ss_dssp ----------------------------------------------------------------------CSSCEEEEEE
T ss_pred ----------------------------------------------------------------------CCCceEEEEE
Confidence 1156889999
Q ss_pred ccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEee
Q psy14906 421 THCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK 500 (583)
Q Consensus 421 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 500 (583)
+|+++++++++.+|.|++||+.+++... + ..|...|.+++|+|++++|++++.||.|++||+.++ +.+....
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~--~~~~~~~ 304 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQ-L-----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQSK 304 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSSCEEE-E-----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEE-E-----cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC--eEEEEec
Confidence 9999999999999999999999887643 3 589999999999999999999999999999999998 7777778
Q ss_pred ccCCeeeEEeccCCcEEEEEeCCceEEEEEcc
Q psy14906 501 LDNGISFFRTHQESSMLAVCLDDFTVNIIDID 532 (583)
Q Consensus 501 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 532 (583)
+...+.+++|+|++++|++++.||.|++|++.
T Consensus 305 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 88999999999999999999999999999963
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8e-43 Score=324.35 Aligned_cols=295 Identities=20% Similarity=0.319 Sum_probs=256.8
Q ss_pred cceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEE
Q psy14906 100 GIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDII 177 (583)
Q Consensus 100 ~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 177 (583)
.......+.+|...|+++ +|++++|++++.||.|++|++.+++....+. +|...|.+++|+|++++|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----------GHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTSSEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-----------cCCCceEEEEEcCCCCEE
Confidence 345677889999999997 9999999999999999999999999988887 899999999999999999
Q ss_pred EEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEe
Q psy14906 178 GVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFL 257 (583)
Q Consensus 178 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 257 (583)
++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+++++.+..+ ..|...|.+++|+
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~ 158 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFN 158 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEC
T ss_pred EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEc
Confidence 9999999999999999999999999999999999999998 9999999999999999999988888 7899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCCCceeeEEe-ccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccc
Q psy14906 258 YNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIR-EGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIA 336 (583)
Q Consensus 258 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 336 (583)
|++++|++++.|+.|++||+. ..+.+..+ ..+...+..++|+| ++++|++++.|+.|++||+.+++....+...
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 999999999999999999765 33444443 45667899999997 8999999999999999999887654433110
Q ss_pred hhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCce
Q psy14906 337 SANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPT 416 (583)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 416 (583)
. .....+.
T Consensus 234 ~------------------------------------------------------------------------~~~~~~~ 241 (312)
T 4ery_A 234 K------------------------------------------------------------------------NEKYCIF 241 (312)
T ss_dssp C------------------------------------------------------------------------CSSSCCC
T ss_pred C------------------------------------------------------------------------CceEEEE
Confidence 0 0001122
Q ss_pred EEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEee--cCCcEEEEEcc
Q psy14906 417 CVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG--NDQTVKVWHFK 489 (583)
Q Consensus 417 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~ 489 (583)
.....++++++++|+.||.|++||+.+++....+ .+|...|.+++|+|+++++++++ .|++|++|+.+
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-----QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-----hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 3334467899999999999999999999998888 79999999999999999999987 69999999864
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-43 Score=337.45 Aligned_cols=291 Identities=20% Similarity=0.350 Sum_probs=244.8
Q ss_pred ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccc------------------cceEEEEEecCCCEE
Q psy14906 202 QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR------------------KVVTGAHFLYNEPLL 263 (583)
Q Consensus 202 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l 263 (583)
.|...|.+++|+|+|+ +|++|+ ++.+++|++.+++.+..+ ..|. ..|.+++|+|++++|
T Consensus 62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6889999999999999 888877 689999999998876665 3332 249999999999999
Q ss_pred EEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhh
Q psy14906 264 VTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNL 343 (583)
Q Consensus 264 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 343 (583)
++++.|+.|++||++ ..+.+..+.+|...|.+++|+| ++++|++++.|++|++||+++++....+..
T Consensus 139 ~s~~~d~~i~iwd~~----~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-------- 205 (393)
T 1erj_A 139 ATGAEDRLIRIWDIE----NRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-------- 205 (393)
T ss_dssp EEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC--------
T ss_pred EEEcCCCeEEEEECC----CCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEc--------
Confidence 999999999999775 5677888999999999999997 899999999999999999987754332210
Q ss_pred hhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc-
Q psy14906 344 KRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH- 422 (583)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 422 (583)
...+.+++++|
T Consensus 206 --------------------------------------------------------------------~~~v~~~~~~~~ 217 (393)
T 1erj_A 206 --------------------------------------------------------------------EDGVTTVAVSPG 217 (393)
T ss_dssp --------------------------------------------------------------------SSCEEEEEECST
T ss_pred --------------------------------------------------------------------CCCcEEEEEECC
Confidence 14588999999
Q ss_pred CCcEEEEEecCceEEEEEcccCccccccCCC--CCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCC-------
Q psy14906 423 CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHD--NQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGK------- 493 (583)
Q Consensus 423 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~------- 493 (583)
+++++++|+.||.|++||+.++.....+... ...+|...|.+++|+|++++|++++.|+.|++||+.....
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 8999999999999999999998876655221 1147999999999999999999999999999999976411
Q ss_pred ---CceEEe-eccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecC------CCcEEEEEe
Q psy14906 494 ---PPLRSI-KLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSP------DSRWLITAS 563 (583)
Q Consensus 494 ---~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~------d~~~l~s~~ 563 (583)
.+...+ .+...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|++ ++++||+|+
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 122233 3556899999999999999999999999999999999999999999999999886 689999999
Q ss_pred CCCeEEEEeCCCc
Q psy14906 564 MDCTIRVWDIPSS 576 (583)
Q Consensus 564 ~d~~i~vw~~~~~ 576 (583)
.|++|++|++...
T Consensus 378 ~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 378 GDCKARIWKYKKI 390 (393)
T ss_dssp TTSEEEEEEEEEC
T ss_pred CCCcEEECccccc
Confidence 9999999998654
No 45
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.3e-42 Score=338.12 Aligned_cols=319 Identities=22% Similarity=0.335 Sum_probs=279.3
Q ss_pred eeeeecccCcc-EEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe
Q psy14906 103 IVGTYKGHTSP-VHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL 181 (583)
Q Consensus 103 ~~~~~~~h~~~-v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 181 (583)
..+.+.+|.+. +.+++++|++|++++.||+|++||+.+++.+..+. +|...|.+++|+ +++|++|+
T Consensus 110 ~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-----------~h~~~v~~~~~~--~~~l~s~~ 176 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-----------GHTGGVWSSQMR--DNIIISGS 176 (445)
T ss_dssp CCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-----------CCSSCEEEEEEE--TTEEEEEE
T ss_pred eeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-----------CCCCCEEEEEec--CCEEEEEe
Confidence 46678899887 46789999999999999999999999999999887 999999999998 67999999
Q ss_pred cCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCC
Q psy14906 182 SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEP 261 (583)
Q Consensus 182 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 261 (583)
.||.|++||+.+++.+..+.+|...|.+++|++ + .+++|+.||.|++||+.+++.+..+ .+|...|.+++| +++
T Consensus 177 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGR 250 (445)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSS
T ss_pred CCCeEEEEECCcCcEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCC
Confidence 999999999999999999999999999999964 3 7999999999999999999998888 789999999998 788
Q ss_pred EEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhh
Q psy14906 262 LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRN 341 (583)
Q Consensus 262 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 341 (583)
++++++.|+.|++||+. ..+.+..+.+|...|.++.| ++.++++++.||.|++||+.+++.
T Consensus 251 ~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~------------ 311 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNC------------ 311 (445)
T ss_dssp CEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCE------------
T ss_pred EEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCE------------
Confidence 99999999999999876 45777888888888888888 567888888888888888765432
Q ss_pred hhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEc
Q psy14906 342 NLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYIT 421 (583)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 421 (583)
T Consensus 312 -------------------------------------------------------------------------------- 311 (445)
T 2ovr_B 312 -------------------------------------------------------------------------------- 311 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEee-
Q psy14906 422 HCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK- 500 (583)
Q Consensus 422 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 500 (583)
...+ .+|...+.++.+ +++++++++.||.|++||+.++ +.+..+.
T Consensus 312 -------------------------~~~~-----~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~ 357 (445)
T 2ovr_B 312 -------------------------IHTL-----TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG--QCLQTLQG 357 (445)
T ss_dssp -------------------------EEEE-----CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--CEEEEECS
T ss_pred -------------------------EEEE-----cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC--cEEEEEcc
Confidence 1122 467777877777 4568999999999999999888 7777776
Q ss_pred ---ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEee-----cccccceeeEEecCCCcEEEEEeCCCe----E
Q psy14906 501 ---LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKL-----SGHMGQLTDADFSPDSRWLITASMDCT----I 568 (583)
Q Consensus 501 ---~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~h~~~v~~l~~s~d~~~l~s~~~d~~----i 568 (583)
+...|.+++|+ +++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.+|++++.||+ |
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 45689999995 689999999999999999999998887 478899999999999999999999997 9
Q ss_pred EEEeCCC
Q psy14906 569 RVWDIPS 575 (583)
Q Consensus 569 ~vw~~~~ 575 (583)
.+||+..
T Consensus 436 ~v~df~~ 442 (445)
T 2ovr_B 436 LVLDFDV 442 (445)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999975
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-43 Score=328.59 Aligned_cols=306 Identities=15% Similarity=0.196 Sum_probs=237.0
Q ss_pred ceeeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCc--EEEEeeccCCceEEecccCCcceEEEeeCCCCCEEE
Q psy14906 101 IDIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEE--TYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIG 178 (583)
Q Consensus 101 ~~~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 178 (583)
.+.++.+.+|.++|.++..++.+||+++.|++|++||+.++. ....+.. ..|...|.+++|+|++++|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~---------~~h~~~v~~v~~sp~~~~la 74 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDE---------TAHKKAIRSVAWRPHTSLLA 74 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECT---------TCCCSCEEEEEECTTSSEEE
T ss_pred cccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEec---------CCccCCEEEEEECCCCCEEE
Confidence 356788999999999985555599999999999999998753 3444421 03899999999999999999
Q ss_pred EEecCCeEEEEEccC-------CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC----eehhhhhhcc
Q psy14906 179 VGLSNKKIILHNILT-------DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR----QVENQIKKAH 247 (583)
Q Consensus 179 ~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~ 247 (583)
+|+.|++|++||+.. .+.+..+.+|...|.+++|+|+++ +|++|+.|++|++||+... +++..+ .+|
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~-~~h 152 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVL-QEH 152 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEE-CCC
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEe-ccC
Confidence 999999999999853 356777889999999999999999 9999999999999999432 455666 789
Q ss_pred ccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC-CCEEEEeeCCCcEEEEEccc
Q psy14906 248 RKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS-SDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 248 ~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 326 (583)
...|.+++|+|++++|++++.|++|++|+.... ....+..+.+|...|.+++|+|.. +.+|++++.|++|++||+..
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 999999999999999999999999999976522 346778899999999999999832 56899999999999999875
Q ss_pred cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccc
Q psy14906 327 ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPER 406 (583)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 406 (583)
+...... .|. ....
T Consensus 231 ~~~~~~~-------------------------------------------------------~~~-----------~~~~ 244 (330)
T 2hes_X 231 DDEDDQQ-------------------------------------------------------EWV-----------CEAI 244 (330)
T ss_dssp ECTTSCE-------------------------------------------------------EEE-----------EEEE
T ss_pred CCccccc-------------------------------------------------------eeE-----------Eeee
Confidence 4211000 000 0000
Q ss_pred ccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcc--ccccCCCCCCCccc-CeeEEEEeC--CCcEEEEeecCC
Q psy14906 407 CKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAH--RGSYGHDNQPGHVG-GVRGVVSDN--LNQIVISGGNDQ 481 (583)
Q Consensus 407 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~h~~-~v~~~~~s~--~~~~l~s~~~dg 481 (583)
+...|...+.+++|++++ ++++++.||.|++|+..+++. ..... .+|.. .|.+++|+| ++++|++++.||
T Consensus 245 ~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~----~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 245 LPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA----LCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp CCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES----CTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred cccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc----cccccceEEEEEEecCCCceEEEEecCCC
Confidence 111233679999999765 899999999999999987642 22221 46876 899999999 689999999999
Q ss_pred cEEEEEccC
Q psy14906 482 TVKVWHFKQ 490 (583)
Q Consensus 482 ~i~iwd~~~ 490 (583)
+|++||++.
T Consensus 320 ~v~~W~~~~ 328 (330)
T 2hes_X 320 IVNFWSLEK 328 (330)
T ss_dssp EEEEEEC--
T ss_pred cEEEEEecc
Confidence 999999865
No 47
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.5e-43 Score=330.33 Aligned_cols=297 Identities=19% Similarity=0.283 Sum_probs=251.3
Q ss_pred CCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe-----ehhhhhhccccceEEEEEecCCCEEEEEe
Q psy14906 193 TDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ-----VENQIKKAHRKVVTGAHFLYNEPLLVTSS 267 (583)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 267 (583)
+.+...++++|.+.|++++|+|++..+|++|+.|++|++||+.+.+ +...+ .+|...|.+++|+|++++|++++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCCCCEEEEEc
Confidence 3455667999999999999999854499999999999999997653 34555 78999999999999999999999
Q ss_pred CCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhc
Q psy14906 268 PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKN 347 (583)
Q Consensus 268 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 347 (583)
.|+.+++|+.. ..........+...+....+++ ++.+|++++.|+.+++||+.........
T Consensus 106 ~d~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~-------------- 166 (340)
T 4aow_A 106 WDGTLRLWDLT----TGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQ-------------- 166 (340)
T ss_dssp TTSEEEEEETT----TTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEEC--------------
T ss_pred ccccceEEeec----ccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEE--------------
Confidence 99999999765 4455666667778888888886 7899999999999999998654321110
Q ss_pred chhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCC--c
Q psy14906 348 RLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCG--N 425 (583)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~ 425 (583)
...+...+..++|++++ .
T Consensus 167 ------------------------------------------------------------~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 167 ------------------------------------------------------------DESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp ------------------------------------------------------------SSSCSSCEEEEEECSCSSSC
T ss_pred ------------------------------------------------------------eccccCcccceEEccCCCCc
Confidence 11122567888888764 5
Q ss_pred EEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCe
Q psy14906 426 FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGI 505 (583)
Q Consensus 426 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 505 (583)
++++++.|+.|++||+.+++....+ .+|...|++++|+|++++|++++.||.|++||+.+. +++..+.....+
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~~~~v 259 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNH-----IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLDGGDII 259 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEECSSCE
T ss_pred EEEEEcCCCEEEEEECCCCceeeEe-----cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--ceeeeecCCceE
Confidence 7889999999999999999998888 789999999999999999999999999999999998 888889999999
Q ss_pred eeEEeccCCcEEEEEeCCceEEEEEccccceEEeec---------ccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCc
Q psy14906 506 SFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS---------GHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 506 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~ 576 (583)
.+++|+|++.++ +++.|+.|++||++++..+..+. +|...|++++|+||+++|++|+.||.|+|||+++|
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 999999987655 45678999999999887765543 68889999999999999999999999999999998
Q ss_pred c
Q psy14906 577 Q 577 (583)
Q Consensus 577 ~ 577 (583)
+
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 6
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.6e-42 Score=337.66 Aligned_cols=322 Identities=18% Similarity=0.213 Sum_probs=274.8
Q ss_pred eeeeeecccCccE-EEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEE
Q psy14906 102 DIVGTYKGHTSPV-HLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVG 180 (583)
Q Consensus 102 ~~~~~~~~h~~~v-~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 180 (583)
.....+.+|...+ .++.+++++|++|+.||+|++||+.+++.+..+. +|...|.+++|+|++ +|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-----------~h~~~V~~l~~~~~~-~l~s~ 179 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-----------GHDGGVWALKYAHGG-ILVSG 179 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----------CCSSCEEEEEECSTT-EEEEE
T ss_pred cceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-----------CCCcCEEEEEEcCCC-EEEEE
Confidence 3456788998885 6778899999999999999999999999999987 999999999999988 99999
Q ss_pred ecCCeEEEEEccCCceeEEEeccCCCeEEEEEec--CCCCEEEEEcCCCcEEEEeCCCCeeh------------------
Q psy14906 181 LSNKKIILHNILTDESLMEFIQTWGPVTALSFRT--DGPPMMVSGSNTGHLTVWNLEDRQVE------------------ 240 (583)
Q Consensus 181 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~------------------ 240 (583)
+.||+|++||+.+++.+..+.+|...|.+++|++ +++ ++++++.||.|++||+.+++..
T Consensus 180 s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 180 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 9999999999999999999999999999999995 556 8999999999999999876533
Q ss_pred -----hhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeC
Q psy14906 241 -----NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315 (583)
Q Consensus 241 -----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 315 (583)
..+ .+|...+.++ +++++++++++.|+.|++||+. ..+.+..+.+|...|.+++|+| +++++++++.
T Consensus 259 ~~~~~~~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~ 330 (464)
T 3v7d_B 259 NPYFVGVL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDH-ERKRCISASM 330 (464)
T ss_dssp CTTEEEEE-CCCSSCEEEE--EEETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEET-TTTEEEEEET
T ss_pred CeEEEEEc-cCccceEEEE--cCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeC
Confidence 233 5777888776 6789999999999999999775 5677788888888888888887 7888888888
Q ss_pred CCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcc
Q psy14906 316 DSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKS 395 (583)
Q Consensus 316 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 395 (583)
||.|++||+.+++.
T Consensus 331 dg~i~vwd~~~~~~------------------------------------------------------------------ 344 (464)
T 3v7d_B 331 DTTIRIWDLENGEL------------------------------------------------------------------ 344 (464)
T ss_dssp TSCEEEEETTTTEE------------------------------------------------------------------
T ss_pred CCcEEEEECCCCcE------------------------------------------------------------------
Confidence 88888888765422
Q ss_pred cccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEE
Q psy14906 396 KMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVI 475 (583)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 475 (583)
...+ .+|...|.+++|+ +++|+
T Consensus 345 ---------------------------------------------------~~~~-----~~h~~~v~~~~~~--~~~l~ 366 (464)
T 3v7d_B 345 ---------------------------------------------------MYTL-----QGHTALVGLLRLS--DKFLV 366 (464)
T ss_dssp ---------------------------------------------------EEEE-----CCCSSCEEEEEEC--SSEEE
T ss_pred ---------------------------------------------------EEEE-----eCCCCcEEEEEEc--CCEEE
Confidence 2223 5788899999997 57999
Q ss_pred EeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEe-ecccccceeeEEecC
Q psy14906 476 SGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRK-LSGHMGQLTDADFSP 554 (583)
Q Consensus 476 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~h~~~v~~l~~s~ 554 (583)
+++.||.|++||+.+. .......+...+..++|+|+++++++++ ||.|++||+++++.+.. +.+|...|.+++|+
T Consensus 367 s~s~dg~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~- 442 (464)
T 3v7d_B 367 SAAADGSIRGWDANDY--SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK- 442 (464)
T ss_dssp EEETTSEEEEEETTTC--CEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-
T ss_pred EEeCCCcEEEEECCCC--ceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-
Confidence 9999999999999987 6777777778899999999999999998 89999999999999876 67889999999997
Q ss_pred CCcEEEEEeCCCeEEEEe
Q psy14906 555 DSRWLITASMDCTIRVWD 572 (583)
Q Consensus 555 d~~~l~s~~~d~~i~vw~ 572 (583)
++.++++++.|+.+.+|-
T Consensus 443 ~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 443 GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TTEEEEEEEETTEEEEEE
T ss_pred CCEEEEEEEeCCeEEEEE
Confidence 445566667777666554
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=351.93 Aligned_cols=329 Identities=13% Similarity=0.152 Sum_probs=271.0
Q ss_pred cEEEE--ccCCC-EEEEE----------eCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEE
Q psy14906 113 PVHLI--LPFGP-HLISV----------DEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGV 179 (583)
Q Consensus 113 ~v~~i--s~~~~-~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 179 (583)
.|.++ +|+++ +|+++ +.|+.|++||+.+++....+.. ..|...|.+++|+|++++|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~ 84 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS---------LQVDSKFNDLDWSHNNKIIAG 84 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC---------CCCSSCEEEEEECSSSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE---------EecCCceEEEEECCCCCeEEE
Confidence 44554 89987 89998 8899999999998763211110 067889999999999999999
Q ss_pred EecCCeEEEEEccC----CceeEEEeccCCCeEEEEEecC-CCCEEEEEcCCCcEEEEeCCCCe------ehhhh--hhc
Q psy14906 180 GLSNKKIILHNILT----DESLMEFIQTWGPVTALSFRTD-GPPMMVSGSNTGHLTVWNLEDRQ------VENQI--KKA 246 (583)
Q Consensus 180 ~~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~------~~~~~--~~~ 246 (583)
++.||.|++||+.+ .+.+..+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++ ....+ ...
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC-EEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence 99999999999987 4588888999999999999999 55 99999999999999999876 22221 157
Q ss_pred cccceEEEEEecC-CCEEEEEeCCCeEEEEEccCCCCCceeeEEeccC------CCCCeeEEEeeCCCCEEEEeeCCC--
Q psy14906 247 HRKVVTGAHFLYN-EPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGH------SAPPNYIQFYGNSSDNILSAAGDS-- 317 (583)
Q Consensus 247 ~~~~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg-- 317 (583)
|...|.+++|+|+ +.+|++++.|+.|++||++ ..+.+..+..+ ...+.+++|+|.+..++++++.|+
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 8999999999999 7899999999999999775 45666676665 788999999984457999999998
Q ss_pred -cEEEEEccccc-cceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcc
Q psy14906 318 -TLRIFNTKSET-SNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKS 395 (583)
Q Consensus 318 -~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 395 (583)
.|++||++++. ....+.
T Consensus 240 ~~i~~~d~~~~~~~~~~~~------------------------------------------------------------- 258 (416)
T 2pm9_A 240 PSILIWDLRNANTPLQTLN------------------------------------------------------------- 258 (416)
T ss_dssp CCCCEEETTSTTSCSBCCC-------------------------------------------------------------
T ss_pred ceEEEEeCCCCCCCcEEee-------------------------------------------------------------
Confidence 99999998753 221110
Q ss_pred cccceeeecccccccCCCCceEEEEcc-CCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCC-cE
Q psy14906 396 KMDDMFLVPERCKQAKQSKPTCVYITH-CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLN-QI 473 (583)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~ 473 (583)
..+...+.+++|+| ++++|++++.||.|++||+.+++.+..+ ..|...|.+++|+|++ .+
T Consensus 259 -------------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 259 -------------QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-----PARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp -------------SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-----ECSSSCCCCEEECTTCTTE
T ss_pred -------------cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-----cCCCCceEEEEECCCCCCE
Confidence 02236799999999 8999999999999999999999998888 7899999999999999 89
Q ss_pred EEEeecCCcEEEEEccCCCCCceEE-------------ee---------------------ccCCeeeEEeccCCcEEEE
Q psy14906 474 VISGGNDQTVKVWHFKQTGKPPLRS-------------IK---------------------LDNGISFFRTHQESSMLAV 519 (583)
Q Consensus 474 l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~---------------------~~~~v~~~~~s~~~~~l~~ 519 (583)
|++++.|+.|++||+.......... +. +..++.+++|+|+|++||+
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 9999999999999998763211110 00 2356779999999999999
Q ss_pred EeCCceEEEEEcccc
Q psy14906 520 CLDDFTVNIIDIDTC 534 (583)
Q Consensus 520 ~~~dg~i~i~d~~~~ 534 (583)
++.|+.|+||++.+.
T Consensus 401 ~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 401 TPDGKGVSITNPKIS 415 (416)
T ss_dssp CTTSSCBCCBCCCCC
T ss_pred eCCCCeEEEEEeccC
Confidence 999999999998764
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-42 Score=331.07 Aligned_cols=306 Identities=18% Similarity=0.243 Sum_probs=246.4
Q ss_pred ccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCce-------EEecccCCcceEEEeeCCCCCEEEE
Q psy14906 109 GHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTF-------KIMGKRWNSCVNVLEPSPVVDIIGV 179 (583)
Q Consensus 109 ~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~s~~~~~l~~ 179 (583)
+|...|.++ +|||++||+++ ++.+++|++.+++.+..+....... ......+...|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 699999987 99999999976 7899999999999887775221000 0000122345999999999999999
Q ss_pred EecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEec-
Q psy14906 180 GLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLY- 258 (583)
Q Consensus 180 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~- 258 (583)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++ +|++++.|++|++||+++++....+ .+...+.+++|+|
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPG 217 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECST
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECC
Confidence 99999999999999999999999999999999999999 8999999999999999999887776 4677899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCceeeEEe-------ccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccce
Q psy14906 259 NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIR-------EGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNK 331 (583)
Q Consensus 259 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 331 (583)
++++|++++.|+.|++||+. .+..+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.+.....
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp TCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC-------
T ss_pred CCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 89999999999999999765 33444444 57899999999997 89999999999999999997654321
Q ss_pred eeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccC
Q psy14906 332 NLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAK 411 (583)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (583)
..... ...... .....|
T Consensus 293 ~~~~~---------------------------------------------~~~~~~------------------~~~~~h 309 (393)
T 1erj_A 293 DSKTP---------------------------------------------NSGTCE------------------VTYIGH 309 (393)
T ss_dssp -----------------------------------------------------CEE------------------EEEECC
T ss_pred cccCC---------------------------------------------CCCcce------------------EEEecc
Confidence 11000 000000 001123
Q ss_pred CCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC------CCcEEEEeecCCcEEE
Q psy14906 412 QSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN------LNQIVISGGNDQTVKV 485 (583)
Q Consensus 412 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~dg~i~i 485 (583)
...+.+++++|++++|++|+.||.|++||..+++.+..+ .+|...|.+++|++ ++++|++|+.||+|++
T Consensus 310 ~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-----~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 310 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-----QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-----CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 367899999999999999999999999999999988888 79999999999986 6889999999999999
Q ss_pred EEccCC
Q psy14906 486 WHFKQT 491 (583)
Q Consensus 486 wd~~~~ 491 (583)
|++...
T Consensus 385 W~~~~~ 390 (393)
T 1erj_A 385 WKYKKI 390 (393)
T ss_dssp EEEEEC
T ss_pred Cccccc
Confidence 998764
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-42 Score=327.88 Aligned_cols=309 Identities=14% Similarity=0.206 Sum_probs=267.2
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy14906 196 SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275 (583)
Q Consensus 196 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w 275 (583)
....+.+|...|++++|+|+++ +|++++.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++|
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 3455789999999999999999 8999999999999999999999988 7899999999999999999999999999999
Q ss_pred EccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC-----CcEEEEEccccccceeeccchhhhhhhhhhcchh
Q psy14906 276 IFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD-----STLRIFNTKSETSNKNLGIASANRNNLKRKNRLE 350 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (583)
+++ ..+.+..+. +...+.+++|+| ++.++++++.+ +.|++||+........+.....
T Consensus 102 d~~----~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~------------ 163 (369)
T 3zwl_B 102 DVS----NGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE------------ 163 (369)
T ss_dssp ETT----TCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS------------
T ss_pred ECC----CCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc------------
Confidence 775 445666665 788999999997 89999999998 9999999987654433211000
Q ss_pred ccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEE
Q psy14906 351 KMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIG 430 (583)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 430 (583)
.....+. .......+.+++|+|++++++++
T Consensus 164 ---------------------------------~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 164 ---------------------------------EPIHKII-----------------THEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp ---------------------------------SCSEEEE-----------------CCTTCCCEEEEEECGGGCEEEEE
T ss_pred ---------------------------------ceeeecc-----------------CCcCccceeEEEEcCCCCEEEEE
Confidence 0000000 00001379999999999999999
Q ss_pred ecCceEEEEEccc-CccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEE
Q psy14906 431 YSSGHVDRFNIQS-GAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR 509 (583)
Q Consensus 431 ~~dg~i~i~d~~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 509 (583)
+.+|.|++||+.+ ++....+ ..|...|.+++|+|++++|++++.|+.|++||+.+. +.+..+.+...+.+++
T Consensus 194 ~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~ 266 (369)
T 3zwl_B 194 HKDGKISKYDVSNNYEYVDSI-----DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL--QVLKKYETDCPLNTAV 266 (369)
T ss_dssp ETTSEEEEEETTTTTEEEEEE-----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSCEEEEE
T ss_pred cCCCEEEEEECCCCcEeEEEE-----ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC--ceeeeecCCCCceeEE
Confidence 9999999999998 6777776 689999999999999999999999999999999998 8888888889999999
Q ss_pred eccCCcEEEEEeCCc--------------eEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeEEEEeCCC
Q psy14906 510 THQESSMLAVCLDDF--------------TVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575 (583)
Q Consensus 510 ~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~ 575 (583)
|+|+++++++++.++ .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++++
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 999999999999988 899999999999999999999999999999999999999999999999998
Q ss_pred cccccc
Q psy14906 576 SQLIDC 581 (583)
Q Consensus 576 ~~~~~~ 581 (583)
+.....
T Consensus 347 ~~~~~~ 352 (369)
T 3zwl_B 347 SYFDFK 352 (369)
T ss_dssp HHHTCC
T ss_pred ccchhH
Confidence 765543
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-41 Score=333.29 Aligned_cols=329 Identities=22% Similarity=0.330 Sum_probs=284.6
Q ss_pred cEEEeecCCCCCC-eEEEEeeC-eEEEEEcCCeEEEEec-cceeeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy14906 63 FKLLSVSPQHEDD-ITCLSSDF-FHIYTSANNIIYAWRR-GIDIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIK 139 (583)
Q Consensus 63 ~~~~~~~~~h~~~-v~~~~~~~-~~~~~~~~~~i~vw~~-~~~~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~ 139 (583)
.+....+.+|.+. ++|+++++ .+++++.|+.|++||. .++.+..+.+|...|.++..++++|++++.||+|++||+.
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred cceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECC
Confidence 3445667889886 57899987 5667789999999996 5688889999999999997789999999999999999999
Q ss_pred CCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCE
Q psy14906 140 AEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPM 219 (583)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 219 (583)
+++.+..+. +|...|.+++|+ ++.|++|+.||.|++||+.+++.+..+.+|...|.+++| +++ +
T Consensus 188 ~~~~~~~~~-----------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~-~ 251 (445)
T 2ovr_B 188 TGECIHTLY-----------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR-R 251 (445)
T ss_dssp TTEEEEEEC-----------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS-C
T ss_pred cCcEEEEEC-----------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC-E
Confidence 999999887 899999999995 678999999999999999999999999999999999999 566 7
Q ss_pred EEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCee
Q psy14906 220 MVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNY 299 (583)
Q Consensus 220 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~ 299 (583)
+++++.||.|++||+++++.+..+ .+|...|.++.| ++.++++++.|+.|++||+. .++.+..+.+|...+.+
T Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~ 324 (445)
T 2ovr_B 252 VVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSG 324 (445)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEE
T ss_pred EEEEcCCCEEEEEECCCCcEeEEe-cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEE
Confidence 999999999999999999999988 789999999999 88999999999999999775 46778888999999888
Q ss_pred EEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEE
Q psy14906 300 IQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAA 379 (583)
Q Consensus 300 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (583)
+.+. ++++++++.||.|++||+.+++....+...
T Consensus 325 ~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------- 358 (445)
T 2ovr_B 325 MELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------- 358 (445)
T ss_dssp EEEE---TTEEEEEETTSCEEEEETTTCCEEEEECST-------------------------------------------
T ss_pred EEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccC-------------------------------------------
Confidence 8874 569999999999999999887655443110
Q ss_pred EecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcc
Q psy14906 380 IHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHV 459 (583)
Q Consensus 380 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~ 459 (583)
..+...+.+++++ ++++++|+.||.|++||+.+++.+..+.......|.
T Consensus 359 -----------------------------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 407 (445)
T 2ovr_B 359 -----------------------------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407 (445)
T ss_dssp -----------------------------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred -----------------------------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCC
Confidence 0122568888885 689999999999999999999988776322224788
Q ss_pred cCeeEEEEeCCCcEEEEeecCCc----EEEEEccCC
Q psy14906 460 GGVRGVVSDNLNQIVISGGNDQT----VKVWHFKQT 491 (583)
Q Consensus 460 ~~v~~~~~s~~~~~l~s~~~dg~----i~iwd~~~~ 491 (583)
+.|.+++|+|++.++++++.||+ |.+||+...
T Consensus 408 ~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 408 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999999999999999998 999999764
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-43 Score=346.78 Aligned_cols=314 Identities=11% Similarity=0.071 Sum_probs=231.7
Q ss_pred CCCCCEEEEEecCCeEEEEEccCCcee----EEEeccCCCeEEEEEecC------CCCEEEEEcCCCcEEEEeCCCCeeh
Q psy14906 171 SPVVDIIGVGLSNKKIILHNILTDESL----MEFIQTWGPVTALSFRTD------GPPMMVSGSNTGHLTVWNLEDRQVE 240 (583)
Q Consensus 171 s~~~~~l~~~~~d~~i~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~~l~s~~~dg~i~vwd~~~~~~~ 240 (583)
+|+++.+++++.|++|+|||+.+++.. ..+.+|.+.|.+++|+|+ +. +|++++.||+|++||+.+++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccc
Confidence 455556666778899999999887653 346677889999999997 35 8999999999999999876422
Q ss_pred -----------hhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEE--EeeCCC
Q psy14906 241 -----------NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQ--FYGNSS 307 (583)
Q Consensus 241 -----------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~ 307 (583)
..+ .+|...|++++|++++ .|++|+.||+|++||++.. ......+.+|...|.+++ |+| ++
T Consensus 249 ~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~~s~-~g 322 (524)
T 2j04_B 249 VHVFKMCEKPSLTL-SLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTAYSD-FE 322 (524)
T ss_dssp SSEEECCCSCSEEE-CCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEECCT-TS
T ss_pred cccceeecCceEEE-EcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEEcCC-CC
Confidence 244 6789999999999864 8999999999999977532 234456789999999994 454 66
Q ss_pred -CEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCce
Q psy14906 308 -DNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNK 386 (583)
Q Consensus 308 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (583)
.+|++++.|++|++||++++++...+...
T Consensus 323 ~~~laS~S~D~tvklWD~~~~~~~~~~~~~-------------------------------------------------- 352 (524)
T 2j04_B 323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSR-------------------------------------------------- 352 (524)
T ss_dssp CCEEEEEETTSEEEEECGGGHHHHCEEEEE--------------------------------------------------
T ss_pred CeEEEEeccCCeEEEEECCCCCcccccccc--------------------------------------------------
Confidence 89999999999999999876554322000
Q ss_pred EEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEE
Q psy14906 387 VSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVV 466 (583)
Q Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~ 466 (583)
.....+.+++|+|+++.+++++.|+.|++||++++.....+ .+|.+.|++++
T Consensus 353 -----------------------~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l-----~gH~~~V~sva 404 (524)
T 2j04_B 353 -----------------------FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL-----VSRETTITAIG 404 (524)
T ss_dssp -----------------------CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE-----EECSSCEEEEE
T ss_pred -----------------------cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee-----ecCCCceEEEE
Confidence 00024778999999999999999999999999998887777 68999999999
Q ss_pred EeCCCcEEEEeecCCcEEEEEccCCCCCceEEee------ccCCeeeEEeccCCcEEEEEeCCceEEEEEcc-ccceEEe
Q psy14906 467 SDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK------LDNGISFFRTHQESSMLAVCLDDFTVNIIDID-TCTIIRK 539 (583)
Q Consensus 467 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~ 539 (583)
|+|++++|++|+.||+|++||+... .+.... ....+.+++|+|+++.+.. .. .+.+|+.. ++..+..
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~---~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~ 478 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARR---LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAK 478 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSS---TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC----------
T ss_pred eCCCCCeEEEEECCCEEEEEechHh---hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceee
Confidence 9999999999999999999998654 222211 1124678999999985532 22 23444443 5677888
Q ss_pred ecccccceeeEEecCCCc---EEEEEeCCCeEEEEeCCC
Q psy14906 540 LSGHMGQLTDADFSPDSR---WLITASMDCTIRVWDIPS 575 (583)
Q Consensus 540 ~~~h~~~v~~l~~s~d~~---~l~s~~~d~~i~vw~~~~ 575 (583)
+.+|...|.+|+|+|+++ +||+|+.||.|+||++.-
T Consensus 479 l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 479 IDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ---CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 999999999999999964 999999999999999863
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-41 Score=330.54 Aligned_cols=339 Identities=12% Similarity=0.098 Sum_probs=275.7
Q ss_pred EEEe--eC-eEEEEEcCCeEEEEecc-ceeeeeecccCccEEE-EccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCC
Q psy14906 78 CLSS--DF-FHIYTSANNIIYAWRRG-IDIVGTYKGHTSPVHL-ILPFGPHLISVDEESNVKVWDIKAEETYLELSFDND 152 (583)
Q Consensus 78 ~~~~--~~-~~~~~~~~~~i~vw~~~-~~~~~~~~~h~~~v~~-is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 152 (583)
+++| ++ .+++++.|+.|++||.. ++....+..|...... +++++++|++++.||.|++||+.+++....+.
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 136 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ---- 136 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT----
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc----
Confidence 4454 44 68888899999999975 4555556666322222 38999999999999999999999998887776
Q ss_pred ceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q psy14906 153 TFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVW 232 (583)
Q Consensus 153 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 232 (583)
.|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 137 -------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 137 -------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLW 208 (420)
T ss_dssp -------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred -------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEe
Confidence 8999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred eCCCCeehhhhh--hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEE
Q psy14906 233 NLEDRQVENQIK--KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNI 310 (583)
Q Consensus 233 d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 310 (583)
|+++++.+..+. ..|...+.+++|.+++... ....+...+.+++|+| ++++|
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~s~-~~~~l 262 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LHEISTSKKNNLEFGT-YGKYV 262 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CGGGCCCCCCTTCSSC-TTEEE
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------------------eeecccCcccceEEcC-CCCEE
Confidence 999998887772 1466788888887764322 1223566788999997 89999
Q ss_pred EEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEe
Q psy14906 311 LSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLW 390 (583)
Q Consensus 311 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 390 (583)
++++.||.|++||+.+++....+.
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------- 286 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLP-------------------------------------------------------- 286 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence 999999999999998765433221
Q ss_pred ecCcccccceeeecccccccCCCCceEEEEccCCc-EEEEEecCceEEEEEcccCcc-ccccCCCCCCCcccCeeEEEEe
Q psy14906 391 SFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGN-FVLIGYSSGHVDRFNIQSGAH-RGSYGHDNQPGHVGGVRGVVSD 468 (583)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~h~~~v~~~~~s 468 (583)
..+...+.+++|+|+++ ++++|+.||.|++||+.+++. ...+. ..|...|.++.+
T Consensus 287 ------------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~----~~~~~~v~~~~~- 343 (420)
T 3vl1_A 287 ------------------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL----INEGTPINNVYF- 343 (420)
T ss_dssp ------------------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE----ESTTSCEEEEEE-
T ss_pred ------------------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh----ccCCCCceEEEe-
Confidence 11225799999999998 999999999999999998754 45552 236778888855
Q ss_pred CCCcEEEEeecCCcEEEEEccCCCC--------CceEEeeccCCeeeEEeccCCc---EEEEEeCCceEEEEEccc
Q psy14906 469 NLNQIVISGGNDQTVKVWHFKQTGK--------PPLRSIKLDNGISFFRTHQESS---MLAVCLDDFTVNIIDIDT 533 (583)
Q Consensus 469 ~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~i~d~~~ 533 (583)
+++++|++++.|+.|++|++..... .......+...+.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 5788999999999999999987421 2223344567899999999999 778888899999999864
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.8e-41 Score=314.92 Aligned_cols=296 Identities=17% Similarity=0.240 Sum_probs=251.2
Q ss_pred eeeeeecccCccEEEE--ccC-CCEEEEEeCCCcEEEEEcCCCc-----EEEEeeccCCceEEecccCCcceEEEeeCCC
Q psy14906 102 DIVGTYKGHTSPVHLI--LPF-GPHLISVDEESNVKVWDIKAEE-----TYLELSFDNDTFKIMGKRWNSCVNVLEPSPV 173 (583)
Q Consensus 102 ~~~~~~~~h~~~v~~i--s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 173 (583)
.+..+|+||++.|+++ +|+ +++||||+.|++|+|||+.+++ +...+. +|...|.+++|+|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-----------~h~~~V~~~~~s~d 97 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-----------GHSHFVSDVVISSD 97 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-----------CCSSCEEEEEECTT
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-----------CCCCCEEEEEECCC
Confidence 4566899999999998 887 6899999999999999998754 344555 89999999999999
Q ss_pred CCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEE
Q psy14906 174 VDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTG 253 (583)
Q Consensus 174 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 253 (583)
+++|++++.|+.|++|+............+...+..+.++++++ +|++++.|+.+++||............+|...+..
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence 99999999999999999999998888888889999999999998 89999999999999998765544443789999999
Q ss_pred EEEecCC--CEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccce
Q psy14906 254 AHFLYNE--PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNK 331 (583)
Q Consensus 254 ~~~~~~~--~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 331 (583)
++|++++ .++++++.|+.|++|++. ..+....+.+|...|.+++|+| ++++|++++.||.|++||+.+.+...
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLY 251 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceee
Confidence 9998875 578899999999999765 5678888999999999999997 89999999999999999998765543
Q ss_pred eeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccC
Q psy14906 332 NLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAK 411 (583)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (583)
.+..
T Consensus 252 ~~~~---------------------------------------------------------------------------- 255 (340)
T 4aow_A 252 TLDG---------------------------------------------------------------------------- 255 (340)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred eecC----------------------------------------------------------------------------
Confidence 3211
Q ss_pred CCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCC----CCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEE
Q psy14906 412 QSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHD----NQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWH 487 (583)
Q Consensus 412 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 487 (583)
...+.+++++|++.++ +++.|+.|++||++++.....+... ...+|...|++++|+|++++|++|+.||.|+|||
T Consensus 256 ~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 256 GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 1468899999988655 4557899999999987766554321 1247899999999999999999999999999999
Q ss_pred ccCC
Q psy14906 488 FKQT 491 (583)
Q Consensus 488 ~~~~ 491 (583)
++++
T Consensus 335 ~~tG 338 (340)
T 4aow_A 335 VTIG 338 (340)
T ss_dssp EEC-
T ss_pred CCCc
Confidence 9987
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-42 Score=336.98 Aligned_cols=352 Identities=11% Similarity=0.162 Sum_probs=269.8
Q ss_pred EEeccceeeeee-cccCccEEEE--cc-CCCEEEEEeCCCcEEEEEcCC---CcE---EEEeeccCCceEEecccCCcce
Q psy14906 96 AWRRGIDIVGTY-KGHTSPVHLI--LP-FGPHLISVDEESNVKVWDIKA---EET---YLELSFDNDTFKIMGKRWNSCV 165 (583)
Q Consensus 96 vw~~~~~~~~~~-~~h~~~v~~i--s~-~~~~l~s~~~dg~i~iwd~~~---~~~---~~~~~~~~~~~~~~~~~~~~~i 165 (583)
.|+..++.+..+ ++|.+.|+++ +| ++++||+|+.||+|++||+.+ +.. ...+ .|...|
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~------------~h~~~v 114 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY------------DCSSTV 114 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE------------ECSSCE
T ss_pred cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec------------cCCCCE
Confidence 488888888888 8999999997 89 999999999999999999887 431 2222 678999
Q ss_pred EEEeeCCCCCEEEEEecCCeEEEEEcc---CCceeEEEec------------cCCCeEEEE--EecCCCCEEEEEcCCCc
Q psy14906 166 NVLEPSPVVDIIGVGLSNKKIILHNIL---TDESLMEFIQ------------TWGPVTALS--FRTDGPPMMVSGSNTGH 228 (583)
Q Consensus 166 ~~~~~s~~~~~l~~~~~d~~i~iw~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~s~~~dg~ 228 (583)
.+++|+|++++|++++.||.|++||+. +++.+..+.. +...+.++. +++++. +|++++.|+.
T Consensus 115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~ 193 (437)
T 3gre_A 115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSR 193 (437)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSE
T ss_pred EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCe
Confidence 999999999999999999999999994 5655544432 345566666 456787 8999999999
Q ss_pred EEEEeCCCCeehhhhhhc--cccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEec-cCCCCCeeEEEee-
Q psy14906 229 LTVWNLEDRQVENQIKKA--HRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIRE-GHSAPPNYIQFYG- 304 (583)
Q Consensus 229 i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~- 304 (583)
|++||+++++.+..+ .+ |...|++++|+|++++|++++.||.|++||+. ..+.+..+. .|..+|.+++|+|
T Consensus 194 i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 194 VIIFDIRTLERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp EEEEETTTCCEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEEEEEEECTT
T ss_pred EEEEeCCCCeeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCceEEEEeccc
Confidence 999999999998888 56 89999999999999999999999999999775 466777765 7778999997775
Q ss_pred --CCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEec
Q psy14906 305 --NSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHT 382 (583)
Q Consensus 305 --~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (583)
+++.+|++++.||.|++||+.+++....+...
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------------------- 302 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS---------------------------------------------- 302 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS----------------------------------------------
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC----------------------------------------------
Confidence 26779999999999999999887765443110
Q ss_pred CCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCe
Q psy14906 383 GKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGV 462 (583)
Q Consensus 383 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v 462 (583)
...+..+.|+|+++.+ .+. .+.. ..|...|
T Consensus 303 -----------------------------~~~~~~~~~~~~~~~l----~~~--------------~~~~---~~~~~~v 332 (437)
T 3gre_A 303 -----------------------------DEQPSMEHFLPIEKGL----EEL--------------NFCG---IRSLNAL 332 (437)
T ss_dssp -----------------------------SSCCCGGGGSCBCSSG----GGC--------------CCCC---CCSGGGG
T ss_pred -----------------------------CCCCccceeccccccc----ccc--------------eecc---cccCCce
Confidence 1234445566655443 010 1100 2499999
Q ss_pred eEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeecc----CCeeeEEeccCCcEEEEEeCCceEEEEEccccceEE
Q psy14906 463 RGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLD----NGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIR 538 (583)
Q Consensus 463 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 538 (583)
++++|+ ++++|++++.|+.|++||+.++ +....+..+ ..+....++++..+++.. |+........
T Consensus 333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 401 (437)
T 3gre_A 333 STISVS-NDKILLTDEATSSIVMFSLNEL--SSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVD 401 (437)
T ss_dssp CCEEEE-TTEEEEEEGGGTEEEEEETTCG--GGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC--------
T ss_pred EEEEEC-CceEEEecCCCCeEEEEECCCc--ccceEEecccccCceEEEEEeecceEEEEEe--------cccccccccC
Confidence 999999 7899999999999999999988 777766543 245566666666655544 3333444455
Q ss_pred eecccccceeeEEecCC--CcEEEEEeCCCeEEEEe
Q psy14906 539 KLSGHMGQLTDADFSPD--SRWLITASMDCTIRVWD 572 (583)
Q Consensus 539 ~~~~h~~~v~~l~~s~d--~~~l~s~~~d~~i~vw~ 572 (583)
....|...|++++|+++ +.+|++++.||.|+||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 66779999999999998 88999999999999995
No 57
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.9e-41 Score=348.67 Aligned_cols=292 Identities=22% Similarity=0.313 Sum_probs=249.9
Q ss_pred eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC-----eehhhhhhccccceEEEEEecCCCEEEEEeCCCe
Q psy14906 197 LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR-----QVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNT 271 (583)
Q Consensus 197 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 271 (583)
...+.+|.+.|++++|+|++..+|++|+.|++|++||+.+. .....+ .+|...|.+++|+|++++|++++.|+.
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 34678999999999999987559999999999999999764 234455 789999999999999999999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhc
Q psy14906 272 LKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEK 351 (583)
Q Consensus 272 i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
|++||+. .+.....+.+|...|.+++|+| ++++|++++.|++|++||..........
T Consensus 454 v~vwd~~----~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~------------------ 510 (694)
T 3dm0_A 454 LRLWDLA----AGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTIS------------------ 510 (694)
T ss_dssp EEEEETT----TTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEEC------------------
T ss_pred EEEEECC----CCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeec------------------
Confidence 9999775 5677888999999999999997 8999999999999999997543211100
Q ss_pred cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCC--cEEEE
Q psy14906 352 MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCG--NFVLI 429 (583)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~ 429 (583)
.....|...+.+++|+|++ ..+++
T Consensus 511 ------------------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 511 ------------------------------------------------------EGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp ------------------------------------------------------SSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred ------------------------------------------------------cCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 0011233679999999987 68999
Q ss_pred EecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEE
Q psy14906 430 GYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFR 509 (583)
Q Consensus 430 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 509 (583)
++.|+.|++||+.+++....+ .+|.+.|++++|+|++++|++++.||.|++||+.++ +.+..+..+..+.+++
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~--~~~~~~~~~~~v~~~~ 609 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTL-----AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG--KKLYSLEANSVIHALC 609 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT--EEEECCBCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEE-----cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEecCCCcEEEEE
Confidence 999999999999999888888 799999999999999999999999999999999988 7888888888999999
Q ss_pred eccCCcEEEEEeCCceEEEEEccccceEEeecccc-------------------cceeeEEecCCCcEEEEEeCCCeEEE
Q psy14906 510 THQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHM-------------------GQLTDADFSPDSRWLITASMDCTIRV 570 (583)
Q Consensus 510 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~-------------------~~v~~l~~s~d~~~l~s~~~d~~i~v 570 (583)
|+|++.+|+++.. +.|++||+++++.+..+..+. -.+++++|+|||++|++|+.||+|++
T Consensus 610 ~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 610 FSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp ECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 9999998887765 569999999998887665332 13788999999999999999999999
Q ss_pred EeCC
Q psy14906 571 WDIP 574 (583)
Q Consensus 571 w~~~ 574 (583)
|++.
T Consensus 689 W~i~ 692 (694)
T 3dm0_A 689 WGIG 692 (694)
T ss_dssp EEC-
T ss_pred Eecc
Confidence 9985
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6e-40 Score=323.22 Aligned_cols=320 Identities=18% Similarity=0.266 Sum_probs=272.4
Q ss_pred EEEeecCCCCCCe-EEEEeeC-eEEEEEcCCeEEEEec-cceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEc
Q psy14906 64 KLLSVSPQHEDDI-TCLSSDF-FHIYTSANNIIYAWRR-GIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDI 138 (583)
Q Consensus 64 ~~~~~~~~h~~~v-~~~~~~~-~~~~~~~~~~i~vw~~-~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~ 138 (583)
.....+.+|...+ .|+++++ .+++++.|+.|++||. .++.+..+.+|.+.|.++ ++++ +|++++.||+|++||+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred cceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 3455678898874 7888877 5677789999999996 578889999999999998 6666 9999999999999999
Q ss_pred CCCcEEEEeeccCCceEEecccCCcceEEEeeC--CCCCEEEEEecCCeEEEEEccCCce--------------------
Q psy14906 139 KAEETYLELSFDNDTFKIMGKRWNSCVNVLEPS--PVVDIIGVGLSNKKIILHNILTDES-------------------- 196 (583)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~d~~i~iw~~~~~~~-------------------- 196 (583)
.+++.+..+. +|...|.+++|+ +++++|++|+.|+.|++||+.+++.
T Consensus 191 ~~~~~~~~~~-----------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 191 KKGCCTHVFE-----------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTTEEEEEEC-----------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCCcEEEEEC-----------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 9999998887 899999999998 5789999999999999999987653
Q ss_pred ---eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEE
Q psy14906 197 ---LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLK 273 (583)
Q Consensus 197 ---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 273 (583)
+..+.+|...+.++ +++++ ++++++.||.|++||+.+++.+..+ .+|...|.+++|+|+++++++++.|+.|+
T Consensus 260 ~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp TTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred eEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 45667888888877 56677 8999999999999999999999988 78999999999999999999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccc
Q psy14906 274 LWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 274 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
+||++ .++.+..+.+|...|.++.|+ +.+|++++.||.|++||+.++.......
T Consensus 336 vwd~~----~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~------------------- 389 (464)
T 3v7d_B 336 IWDLE----NGELMYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYH------------------- 389 (464)
T ss_dssp EEETT----TTEEEEEECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEE-------------------
T ss_pred EEECC----CCcEEEEEeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeec-------------------
Confidence 99775 567888999999999999995 5799999999999999998754322110
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS 433 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 433 (583)
+...+..++++|+++++++|+ |
T Consensus 390 ---------------------------------------------------------~~~~~~~~~~~~~~~~l~~~~-d 411 (464)
T 3v7d_B 390 ---------------------------------------------------------HTNLSAITTFYVSDNILVSGS-E 411 (464)
T ss_dssp ---------------------------------------------------------CTTCCCEEEEEECSSEEEEEE-T
T ss_pred ---------------------------------------------------------CCCCccEEEEEeCCCEEEEec-C
Confidence 114577889999999999998 8
Q ss_pred ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEc
Q psy14906 434 GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHF 488 (583)
Q Consensus 434 g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 488 (583)
|.|++||+.+++.+..+. ..|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 412 g~i~iwd~~~g~~~~~~~----~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 412 NQFNIYNLRSGKLVHANI----LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TEEEEEETTTCCEEESCT----TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CeEEEEECCCCcEEehhh----ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 999999999999887632 5789999999997 4556666777776665543
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.3e-41 Score=324.59 Aligned_cols=305 Identities=13% Similarity=0.109 Sum_probs=253.0
Q ss_pred eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe------ehhhhhhccccceEEEEEecC----C---CEE
Q psy14906 197 LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ------VENQIKKAHRKVVTGAHFLYN----E---PLL 263 (583)
Q Consensus 197 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~----~---~~l 263 (583)
...+.+|.+.|++++|+| + +|++++.||.|++||+.+++ .+..+ .+|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEE
Confidence 455678999999999999 4 89999999999999999887 56666 689999999999999 9 999
Q ss_pred EEEeCCCeEEEEEccCCCCC-ceeeEEeccC-----CCCCeeEEEe----eCCCCE-EEEeeCCCcEEEEEccc------
Q psy14906 264 VTSSPDNTLKLWIFDKADGN-GRLLRIREGH-----SAPPNYIQFY----GNSSDN-ILSAAGDSTLRIFNTKS------ 326 (583)
Q Consensus 264 ~s~~~d~~i~~w~~~~~~~~-~~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~iwd~~~------ 326 (583)
++++.|+.|++|+++..... ...+..+..| ...|.+++|+ | ++.+ |++++.||.|++||+.+
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999988643211 1126777888 5899999999 8 7888 99999999999999987
Q ss_pred cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccc
Q psy14906 327 ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPER 406 (583)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 406 (583)
++..... +...+. ....
T Consensus 164 ~~~~~~~--------------------------~~~~~~-------------------------------------~~~~ 180 (397)
T 1sq9_A 164 SLTLNWS--------------------------PTLELQ-------------------------------------GTVE 180 (397)
T ss_dssp HTTTCCC--------------------------CEEEEE-------------------------------------EEEC
T ss_pred cceeecc--------------------------Ccceee-------------------------------------eeec
Confidence 3332200 000000 0000
Q ss_pred ccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCC---c---ccCeeEEEEeCCCcEEEEeecC
Q psy14906 407 CKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPG---H---VGGVRGVVSDNLNQIVISGGND 480 (583)
Q Consensus 407 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---h---~~~v~~~~~s~~~~~l~s~~~d 480 (583)
....+...+.+++|+|++ ++++++.||.|++||+.+++....+ .. | ...|.+++|+|++++|++++.|
T Consensus 181 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 181 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF-----ESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE-----ECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE-----eccccccccCCccceEEECCCCCEEEEEecC
Confidence 111233679999999999 9999999999999999999888887 55 8 9999999999999999999999
Q ss_pred ---CcEEEEEccCCCCCceEEee--------------ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeec--
Q psy14906 481 ---QTVKVWHFKQTGKPPLRSIK--------------LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS-- 541 (583)
Q Consensus 481 ---g~i~iwd~~~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 541 (583)
+.|++||+.+. +.+..+. +...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 255 ~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 332 (397)
T 1sq9_A 255 NSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332 (397)
T ss_dssp TTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecc
Confidence 99999999988 7777776 56789999999999999999999999999999999999998
Q ss_pred ----cc---------------ccceeeEEecCCC----------cEEEEEeCCCeEEEEeCCCcc
Q psy14906 542 ----GH---------------MGQLTDADFSPDS----------RWLITASMDCTIRVWDIPSSQ 577 (583)
Q Consensus 542 ----~h---------------~~~v~~l~~s~d~----------~~l~s~~~d~~i~vw~~~~~~ 577 (583)
+| ...|++++|+|++ ++|++++.||.|++|++++|+
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 333 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp GGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 88 9999999999998 799999999999999998874
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=304.09 Aligned_cols=284 Identities=15% Similarity=0.170 Sum_probs=248.8
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC--
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR-- 237 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-- 237 (583)
+|...|.+++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|+++ ++++++.||.+++|++...
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE-LLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT-EEEEEETTSCEEEEETTCCTT
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC-EEEEecCCCeEEEEEeeecCC
Confidence 99999999999 9999999999999999999999999999999999999999999999 9999999999999998764
Q ss_pred -eehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC
Q psy14906 238 -QVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD 316 (583)
Q Consensus 238 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 316 (583)
+....+ .+|...|.+++| +++++++++.|+.+++|+ .......+..|...+.++.|.|.+++.+++++.|
T Consensus 94 ~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 94 EDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp SCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE------TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred CCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc------CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 456666 789999999999 577999999999999996 3566777888999999999998788999999999
Q ss_pred CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccc
Q psy14906 317 STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSK 396 (583)
Q Consensus 317 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 396 (583)
|.|++||....
T Consensus 165 ~~i~i~d~~~~--------------------------------------------------------------------- 175 (313)
T 3odt_A 165 KTIKLWQNDKV--------------------------------------------------------------------- 175 (313)
T ss_dssp SCEEEEETTEE---------------------------------------------------------------------
T ss_pred CCEEEEecCce---------------------------------------------------------------------
Confidence 99999983210
Q ss_pred ccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEE
Q psy14906 397 MDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVIS 476 (583)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 476 (583)
+ ..+. ..|...+.+++|+|++. +++
T Consensus 176 ---------------------------------------~-----------~~~~----~~~~~~i~~~~~~~~~~-~~~ 200 (313)
T 3odt_A 176 ---------------------------------------I-----------KTFS----GIHNDVVRHLAVVDDGH-FIS 200 (313)
T ss_dssp ---------------------------------------E-----------EEEC----SSCSSCEEEEEEEETTE-EEE
T ss_pred ---------------------------------------E-----------EEEe----ccCcccEEEEEEcCCCe-EEE
Confidence 0 0010 23788899999999998 899
Q ss_pred eecCCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCC
Q psy14906 477 GGNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPD 555 (583)
Q Consensus 477 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 555 (583)
++.||.|++||+.++ +++..+. +...+.+++|+|++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+
T Consensus 201 ~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 201 CSNDGLIKLVDMHTG--DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp EETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred ccCCCeEEEEECCch--hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence 999999999999988 7777776 55789999999999 6899999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCeEEEEeCCCccccccc
Q psy14906 556 SRWLITASMDCTIRVWDIPSSQLIDCF 582 (583)
Q Consensus 556 ~~~l~s~~~d~~i~vw~~~~~~~~~~~ 582 (583)
++ +++++.|+.|++|++++++.+...
T Consensus 278 ~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 278 GD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp SC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred CC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 98 667899999999999998876543
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-40 Score=314.74 Aligned_cols=290 Identities=16% Similarity=0.238 Sum_probs=258.2
Q ss_pred eeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEE
Q psy14906 103 IVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVG 180 (583)
Q Consensus 103 ~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 180 (583)
....+.+|...|+++ +|++++|++++.||.|++||+.+++.+..+. .|...|.+++|+|++++|+++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----------~h~~~v~~~~~~~~~~~l~s~ 92 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-----------GHTGTIWSIDVDCFTKYCVTG 92 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTSSEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-----------hcCCcEEEEEEcCCCCEEEEE
Confidence 455688999999997 9999999999999999999999999999987 899999999999999999999
Q ss_pred ecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-----CcEEEEeCCCCeeh-----------hhhh
Q psy14906 181 LSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-----GHLTVWNLEDRQVE-----------NQIK 244 (583)
Q Consensus 181 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~-----------~~~~ 244 (583)
+.||.|++||+.+++.+..+. +...+.+++|+|+++ ++++++.+ +.|++||+..+... ..+
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~- 169 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI- 169 (369)
T ss_dssp ETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-
T ss_pred eCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-
Confidence 999999999999999999888 668999999999999 88888888 99999999765432 222
Q ss_pred hcccc--ceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEE
Q psy14906 245 KAHRK--VVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIF 322 (583)
Q Consensus 245 ~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 322 (583)
..|.. .+.+++|+|++++|++++.|+.|++||+.. ....+..+..|...|.+++|+| ++.+|++++.|+.|++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~ 245 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN---NYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLV 245 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT---TTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC---CcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEE
Confidence 34444 899999999999999999999999997752 2577888889999999999997 89999999999999999
Q ss_pred EccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceee
Q psy14906 323 NTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFL 402 (583)
Q Consensus 323 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 402 (583)
|+.+++....+.
T Consensus 246 d~~~~~~~~~~~-------------------------------------------------------------------- 257 (369)
T 3zwl_B 246 DVSTLQVLKKYE-------------------------------------------------------------------- 257 (369)
T ss_dssp ETTTCCEEEEEE--------------------------------------------------------------------
T ss_pred ECCCCceeeeec--------------------------------------------------------------------
Confidence 998876544331
Q ss_pred ecccccccCCCCceEEEEccCCcEEEEEecCc--------------eEEEEEcccCccccccCCCCCCCcccCeeEEEEe
Q psy14906 403 VPERCKQAKQSKPTCVYITHCGNFVLIGYSSG--------------HVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSD 468 (583)
Q Consensus 403 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s 468 (583)
+...+.+++|+|+++++++++.++ .+++||..+++....+ .+|...|++++|+
T Consensus 258 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~s 324 (369)
T 3zwl_B 258 --------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-----QGHFGPLNTVAIS 324 (369)
T ss_dssp --------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-----ECCSSCEEEEEEC
T ss_pred --------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-----ecccCcEEEEEEC
Confidence 115688999999999999999888 8999999999998888 7899999999999
Q ss_pred CCCcEEEEeecCCcEEEEEccCC
Q psy14906 469 NLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 469 ~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
|++++|++++.||.|++|+++..
T Consensus 325 ~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 325 PQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TTSSEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEcCCCeEEEEECccc
Confidence 99999999999999999999865
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-40 Score=319.93 Aligned_cols=298 Identities=15% Similarity=0.181 Sum_probs=231.3
Q ss_pred EEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCC-CEEEEEecCCeEEEEEccCCceeEEEe--ccCCCeEEEE
Q psy14906 135 VWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVV-DIIGVGLSNKKIILHNILTDESLMEFI--QTWGPVTALS 211 (583)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~~~ 211 (583)
+|++...+....+. +|...|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++
T Consensus 57 ~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 125 (383)
T 3ei3_B 57 IRSLKSYKLHRTAS-----------PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMK 125 (383)
T ss_dssp HHHHTTCEEEEEEC-----------CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEE
T ss_pred cccccccceEEecc-----------CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEE
Confidence 44445556666666 899999999999999 999999999999999999888887776 6889999999
Q ss_pred Eec-CCCCEEEEEcCCCcEEEEeCCCCeehhhhh--hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeE
Q psy14906 212 FRT-DGPPMMVSGSNTGHLTVWNLEDRQVENQIK--KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLR 288 (583)
Q Consensus 212 ~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 288 (583)
|+| +++ +|++++.|+.|++||+.+. .+..+. ..|...|.+++|+|++++|++++.|+.|++||+ ..+.+.
T Consensus 126 ~~~~~~~-~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-----~~~~~~ 198 (383)
T 3ei3_B 126 FNQFNTN-QLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-----DGHEIF 198 (383)
T ss_dssp EETTEEE-EEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-----TSCEEE
T ss_pred eCCCCCC-EEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-----CCCEEE
Confidence 999 556 8999999999999999864 333331 234578999999999999999999999999976 356778
Q ss_pred EeccCCCCCeeEEEeeCCCC-EEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeee
Q psy14906 289 IREGHSAPPNYIQFYGNSSD-NILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFG 367 (583)
Q Consensus 289 ~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (583)
.+.+|...|.+++|+| ++. ++++++.|+.|++||+.+.+....
T Consensus 199 ~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------------- 242 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNS----------------------------------- 242 (383)
T ss_dssp EEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTC-----------------------------------
T ss_pred EeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccc-----------------------------------
Confidence 8889999999999998 666 999999999999999876431100
Q ss_pred cccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccc
Q psy14906 368 LAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHR 447 (583)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 447 (583)
..
T Consensus 243 ------------------------------------------------------------------------------~~ 244 (383)
T 3ei3_B 243 ------------------------------------------------------------------------------YI 244 (383)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------eE
Confidence 00
Q ss_pred cccCCCCCCCcccCeeEEEEeC-CCcEEEEeecCCcEEEEEccCCCCCceEEee------------------ccCCeeeE
Q psy14906 448 GSYGHDNQPGHVGGVRGVVSDN-LNQIVISGGNDQTVKVWHFKQTGKPPLRSIK------------------LDNGISFF 508 (583)
Q Consensus 448 ~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~~v~~~ 508 (583)
.. .+|...|.+++|+| ++++|++++.|+.|++||+.+. .....+. ....+..+
T Consensus 245 ~~------~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 316 (383)
T 3ei3_B 245 AE------MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW--SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA 316 (383)
T ss_dssp EE------EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT--TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred EE------ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC--ccccccccccccccccccceEEeccCCCCceEE
Confidence 00 12444555555555 5555555555555555555554 2222221 12345567
Q ss_pred EeccCCcEEEEEeCCceEEEEEccccceEEeecc--cccceeeEEecCCCcEEEEEeCCCeEEEEeCCC
Q psy14906 509 RTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSG--HMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575 (583)
Q Consensus 509 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~ 575 (583)
+|+|++++ +++.|+.|++||+.+++.+..+.+ |...+..++|+|++++|++++ |+.|++||+++
T Consensus 317 ~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 317 GRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77788777 778999999999999999999987 457788889999999999997 99999999875
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-40 Score=318.68 Aligned_cols=311 Identities=15% Similarity=0.148 Sum_probs=254.1
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCc--eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDE--SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR 237 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 237 (583)
.|..+|.+++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|+++ +|++++.||.|++||++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC-EEEEEcCCCeEEEEECCCC
Confidence 678999999999999999999999999999999887 8888999999999999999998 8999999999999999888
Q ss_pred eehhhhh-hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC
Q psy14906 238 QVENQIK-KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD 316 (583)
Q Consensus 238 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 316 (583)
+....+. ..|...|.+++|+|++++|++++.|+.+++|+++..............|...|.+++|+| ++++|++++.|
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 163 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCD 163 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETT
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCC
Confidence 6443321 568899999999999999999999999999988754321123344467899999999997 89999999999
Q ss_pred CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccc
Q psy14906 317 STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSK 396 (583)
Q Consensus 317 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 396 (583)
|.|++||+...........
T Consensus 164 g~i~~~d~~~~~~~~~~~~------------------------------------------------------------- 182 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAP------------------------------------------------------------- 182 (372)
T ss_dssp SCEEEEECCCTTTSCCCCC-------------------------------------------------------------
T ss_pred CCEEEEEcccccccccccc-------------------------------------------------------------
Confidence 9999999865432110000
Q ss_pred ccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEE
Q psy14906 397 MDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVIS 476 (583)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 476 (583)
.+-+. ....++....+ ..|...|.+++|+|++++|++
T Consensus 183 ------------------------~~~~~--------------~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 183 ------------------------TPWGS--------------KMPFGELMFES-----SSSCGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp ------------------------BTTBS--------------CCCTTCEEEEC-----CCCSSCEEEEEECSSSSEEEE
T ss_pred ------------------------ccccc--------------ccchhhheEec-----CCCCCeEEEEEECCCCCEEEE
Confidence 00000 01223344444 578999999999999999999
Q ss_pred eecCCcEEEEEccCCCCCceEEeecc-CCeeeEEeccCCcEEEEEeCCceEEEEEccc--cce-----------------
Q psy14906 477 GGNDQTVKVWHFKQTGKPPLRSIKLD-NGISFFRTHQESSMLAVCLDDFTVNIIDIDT--CTI----------------- 536 (583)
Q Consensus 477 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~~~----------------- 536 (583)
++.|+.|++||+.++ +++..+..+ .++.+++|+|++++++++ .|+.|++|++.+ ++.
T Consensus 220 ~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 220 VSHDSTVCLADADKK--MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp EETTTEEEEEEGGGT--TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred EeCCCEEEEEECCCC--ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence 999999999999988 777777655 589999999999999888 999999999987 421
Q ss_pred ---------------E------Eee-cccccceeeEEec-CCC---cEEEEEeCCCeEEEEeCCCcccc
Q psy14906 537 ---------------I------RKL-SGHMGQLTDADFS-PDS---RWLITASMDCTIRVWDIPSSQLI 579 (583)
Q Consensus 537 ---------------~------~~~-~~h~~~v~~l~~s-~d~---~~l~s~~~d~~i~vw~~~~~~~~ 579 (583)
. ..+ .+|...|++++|. ++| ++|++++.||.|++|++.+++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 233 4899999999966 676 99999999999999999886543
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-41 Score=324.53 Aligned_cols=313 Identities=16% Similarity=0.180 Sum_probs=248.2
Q ss_pred cCCcceEEEeeCCC----CCEEEEEecCCeEEEEEccCCceeEEEec-----cCCCeEEEEEecC----CCCEEEEEcCC
Q psy14906 160 RWNSCVNVLEPSPV----VDIIGVGLSNKKIILHNILTDESLMEFIQ-----TWGPVTALSFRTD----GPPMMVSGSNT 226 (583)
Q Consensus 160 ~~~~~i~~~~~s~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~~l~s~~~d 226 (583)
+|...|.+++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ ++ +|++|+.|
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d 94 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVAGSR 94 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEEETT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEecCC
Confidence 89999999999984 45677777778999999998888777764 4477999999999 55 89999999
Q ss_pred CcEEEEeCCCCeehhhhhhccccceEEEEEec-CCCEEEEEeCCCeEEEEEccCCCCCceeeEEe---ccCCCCCeeEEE
Q psy14906 227 GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLY-NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIR---EGHSAPPNYIQF 302 (583)
Q Consensus 227 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~---~~~~~~v~~~~~ 302 (583)
|.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.|+.|++||++ ..+.+..+ .+|...|.+++|
T Consensus 95 g~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 95 GIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----TDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp CEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT----TTEEEEEECSTTSCSSCEEEEEE
T ss_pred CEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee----cCeEEEEecccccccCceeEEEE
Confidence 99999999999998888 78999999999999 89999999999999999775 45666666 689999999999
Q ss_pred eeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEec
Q psy14906 303 YGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHT 382 (583)
Q Consensus 303 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (583)
+| ++++|++++.||.|++||+.+++....+..
T Consensus 170 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------------------------- 201 (366)
T 3k26_A 170 DL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKE----------------------------------------------- 201 (366)
T ss_dssp CT-TSSEEEEEETTSCEEEEESCSHHHHHHHHH-----------------------------------------------
T ss_pred CC-CCCEEEEecCCCCEEEEECCCCccccccce-----------------------------------------------
Confidence 97 899999999999999999987765433211
Q ss_pred CCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCe
Q psy14906 383 GKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGV 462 (583)
Q Consensus 383 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v 462 (583)
.+.++|++..+......... ...... ..|...|
T Consensus 202 ----------------------------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~v 234 (366)
T 3k26_A 202 ----------------------------------SYDYNPNKTNRPFISQKIHF--------PDFSTR-----DIHRNYV 234 (366)
T ss_dssp ----------------------------------HHTCCGGGCSSCCCCEEECC--------CSEEEC-----SSCSSCC
T ss_pred ----------------------------------eEEecCCCCcccccceeecc--------Cccccc-----cCCcceE
Confidence 00111222111111111000 001111 4688899
Q ss_pred eEEEEeCCCcEEEEeecCCcEEEEEccCCCC------------CceEEee-ccCCeeeEEeccC--CcEEEEEeCCceEE
Q psy14906 463 RGVVSDNLNQIVISGGNDQTVKVWHFKQTGK------------PPLRSIK-LDNGISFFRTHQE--SSMLAVCLDDFTVN 527 (583)
Q Consensus 463 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~dg~i~ 527 (583)
.+++|+ +++|++++.|+.|++||+.+... ..+..+. +...+.+++|+|+ +++|++++.||.|+
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence 999998 67899999999999999887631 1133333 4468999999999 99999999999999
Q ss_pred EEEccccc----eEEeeccc--ccceeeEEecCCCcEEEEEeCCCeEEEEeCCC
Q psy14906 528 IIDIDTCT----IIRKLSGH--MGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575 (583)
Q Consensus 528 i~d~~~~~----~~~~~~~h--~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~ 575 (583)
+||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999875 34477777 78999999999999999999999999999864
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-40 Score=340.24 Aligned_cols=294 Identities=17% Similarity=0.216 Sum_probs=244.6
Q ss_pred eeeeecccCccEEEE--ccC-CCEEEEEeCCCcEEEEEcCCC-----cEEEEeeccCCceEEecccCCcceEEEeeCCCC
Q psy14906 103 IVGTYKGHTSPVHLI--LPF-GPHLISVDEESNVKVWDIKAE-----ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVV 174 (583)
Q Consensus 103 ~~~~~~~h~~~v~~i--s~~-~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 174 (583)
....+++|.+.|+++ +|+ +++|++|+.|++|++||+.+. .....+. +|...|.+++|+|++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-----------~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-----------GHSHFVEDVVLSSDG 442 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-----------CCSSCEEEEEECTTS
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-----------CCCCcEEEEEECCCC
Confidence 345688999999998 565 479999999999999999763 3445555 999999999999999
Q ss_pred CEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh--hhhccccceE
Q psy14906 175 DIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ--IKKAHRKVVT 252 (583)
Q Consensus 175 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~v~ 252 (583)
++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|+++ +|++++.|++|++||......... ...+|...|.
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 9999999999999999999999999999999999999999999 899999999999999875433221 1157889999
Q ss_pred EEEEecCC--CEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccc
Q psy14906 253 GAHFLYNE--PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSN 330 (583)
Q Consensus 253 ~~~~~~~~--~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 330 (583)
+++|+|++ ..|++++.|+.|++||+. ..+....+.+|...|.+++|+| ++++|++++.||.|++||+.+++.+
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEE
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceE
Confidence 99999987 589999999999999775 4567788999999999999997 8999999999999999999887654
Q ss_pred eeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccccccc
Q psy14906 331 KNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQA 410 (583)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 410 (583)
..+..
T Consensus 597 ~~~~~--------------------------------------------------------------------------- 601 (694)
T 3dm0_A 597 YSLEA--------------------------------------------------------------------------- 601 (694)
T ss_dssp ECCBC---------------------------------------------------------------------------
T ss_pred EEecC---------------------------------------------------------------------------
Confidence 32210
Q ss_pred CCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCC--------------CCcccCeeEEEEeCCCcEEEE
Q psy14906 411 KQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQ--------------PGHVGGVRGVVSDNLNQIVIS 476 (583)
Q Consensus 411 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------~~h~~~v~~~~~s~~~~~l~s 476 (583)
...+.+++|+|++.+++++.. +.|++||+.++..+..+..... ..+...+++++|+|++++|++
T Consensus 602 -~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 602 -NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp -SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred -CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 146889999999998888765 4599999999887765531100 111224789999999999999
Q ss_pred eecCCcEEEEEccC
Q psy14906 477 GGNDQTVKVWHFKQ 490 (583)
Q Consensus 477 ~~~dg~i~iwd~~~ 490 (583)
|+.||.|++|++..
T Consensus 680 gs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 680 GYTDGVIRVWGIGR 693 (694)
T ss_dssp EETTSEEEEEEC--
T ss_pred EcCCCeEEEEeccC
Confidence 99999999999853
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7e-41 Score=318.26 Aligned_cols=299 Identities=15% Similarity=0.214 Sum_probs=244.6
Q ss_pred EEeccCCCeEEEEEecCCCCEEEEEcC---CCcEEEEeCCCCeehhhhhhccccceEEEEEecC---CCEEEEEeCCCeE
Q psy14906 199 EFIQTWGPVTALSFRTDGPPMMVSGSN---TGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYN---EPLLVTSSPDNTL 272 (583)
Q Consensus 199 ~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i 272 (583)
.+.+|...|.+++|+|+++.++++++. |+.|++||+.+++.......+|...|.+++|+|+ +++|++++.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 356799999999999999757778876 9999999999887765543579999999999998 6999999999999
Q ss_pred EEEEccCCCCCceeeEEeccCCCCCeeEEEee-----CCCCEEEEeeCCCcEEEEEccccc-cceeeccchhhhhhhhhh
Q psy14906 273 KLWIFDKADGNGRLLRIREGHSAPPNYIQFYG-----NSSDNILSAAGDSTLRIFNTKSET-SNKNLGIASANRNNLKRK 346 (583)
Q Consensus 273 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~ 346 (583)
++|+++.. ...+..+.+|...|.++.|.+ +++++|++++.||.|++||+.++. ....+...
T Consensus 93 ~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------- 159 (357)
T 3i2n_A 93 HIWNLEAP---EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV---------- 159 (357)
T ss_dssp EEECTTSC---SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC----------
T ss_pred EEEeCCCC---CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc----------
Confidence 99976532 226778889999999997642 378899999999999999998765 33222100
Q ss_pred cchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEE----Ecc
Q psy14906 347 NRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVY----ITH 422 (583)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~s~ 422 (583)
.......+.+++ |+|
T Consensus 160 -------------------------------------------------------------~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 160 -------------------------------------------------------------QGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp -------------------------------------------------------------TTSCCCCEEEEEEECCCC-
T ss_pred -------------------------------------------------------------CCCCCCceEEEEEEeccCC
Confidence 000013577777 789
Q ss_pred CCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC---CCcEEEEeecCCcEEEEEccCCCCCceEEe
Q psy14906 423 CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN---LNQIVISGGNDQTVKVWHFKQTGKPPLRSI 499 (583)
Q Consensus 423 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 499 (583)
+++++++++.||.|++||+.+++.... ..|...|.+++|+| ++++|++++.||.|++||+.+. +....+
T Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~ 250 (357)
T 3i2n_A 179 EERVVCAGYDNGDIKLFDLRNMALRWE------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ--HPTKGF 250 (357)
T ss_dssp CCCEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE--ETTTEE
T ss_pred CCCEEEEEccCCeEEEEECccCceeee------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC--Ccccce
Confidence 999999999999999999999887554 37889999999999 9999999999999999999887 444333
Q ss_pred ------eccCCeeeEEeccCCc-EEEEEeCCceEEEEEcccc-------------------ceEEeecccccceeeEEec
Q psy14906 500 ------KLDNGISFFRTHQESS-MLAVCLDDFTVNIIDIDTC-------------------TIIRKLSGHMGQLTDADFS 553 (583)
Q Consensus 500 ------~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~-------------------~~~~~~~~h~~~v~~l~~s 553 (583)
.+...|.+++|+|+++ +|++++.||.|++||+.++ +.+..+.+|...|++++|+
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 4667999999999999 8999999999999999854 4677788999999999999
Q ss_pred CCCcEEE-EEeCCCeEEEEeCCCcccc
Q psy14906 554 PDSRWLI-TASMDCTIRVWDIPSSQLI 579 (583)
Q Consensus 554 ~d~~~l~-s~~~d~~i~vw~~~~~~~~ 579 (583)
|++++|+ +++.|+.|++||+.+.+++
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKLNKI 357 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC----
T ss_pred CCCCeEEEEecCCCcEEEEECCCcccC
Confidence 9999998 8999999999999987653
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-40 Score=322.65 Aligned_cols=300 Identities=15% Similarity=0.165 Sum_probs=232.2
Q ss_pred ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeeh--hhhhhccccceEEEEEec-CCCEEEEEeCCCe
Q psy14906 195 ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVE--NQIKKAHRKVVTGAHFLY-NEPLLVTSSPDNT 271 (583)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~ 271 (583)
+.......|...|++|+|+|.+..+||+|+.||.|+|||+.+++.. ..+ .+|.+.|++++|+| ++++|++++.|++
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 3445566788899999999965558999999999999999876543 334 58999999999998 6889999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhc
Q psy14906 272 LKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEK 351 (583)
Q Consensus 272 i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
|++||++. .....+.....+...+.+++|+| ++.+|++++.||.|++||++.... ..+
T Consensus 189 v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~-~~~------------------ 246 (435)
T 4e54_B 189 TRLQDFKG--NILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKEL-WNL------------------ 246 (435)
T ss_dssp EEEEETTS--CEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBC-CCS------------------
T ss_pred EEEeeccC--CceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCccee-EEE------------------
Confidence 99997742 11222222233445678999997 899999999999999999864321 111
Q ss_pred cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCc-EEEEE
Q psy14906 352 MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGN-FVLIG 430 (583)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~ 430 (583)
..|...|.+++|+|+++ +++++
T Consensus 247 ---------------------------------------------------------~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 247 ---------------------------------------------------------RMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp ---------------------------------------------------------BCCSSCEEEEEECTTCSSEEEEE
T ss_pred ---------------------------------------------------------ecccceEEeeeecCCCceEEEEe
Confidence 11236799999999976 78889
Q ss_pred ecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeecc-------C
Q psy14906 431 YSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLD-------N 503 (583)
Q Consensus 431 ~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~ 503 (583)
+.|+.|++||+.+.+....+... .+|...|++++|+|++++|++++.||.|++||+.+. .....+..+ .
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYS--LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW--DCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBC--CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS--SSEEEECCCCCCCCSSS
T ss_pred cCcceeeEEecccccccceEEEe--eeccccccceeECCCCCeeEEEcCCCEEEEEECCCC--ccceEEecccccccccc
Confidence 99999999999887765544322 589999999999999999999999999999999987 555444322 1
Q ss_pred CeeeEEeccCCcEEEEEe------------CCceEEEEEccccceEEeec-ccccceeeE-EecCCCcEEEEEeCCCeEE
Q psy14906 504 GISFFRTHQESSMLAVCL------------DDFTVNIIDIDTCTIIRKLS-GHMGQLTDA-DFSPDSRWLITASMDCTIR 569 (583)
Q Consensus 504 ~v~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~-~h~~~v~~l-~~s~d~~~l~s~~~d~~i~ 569 (583)
.+....|+|++.+++++. .++.|++||..+++.+..+. +|...|.++ +|+|+|++||+|+ |++|+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~ 424 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHIL 424 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEE
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEE
Confidence 234557777777777764 23579999999999988764 688889998 6999999999876 88999
Q ss_pred EEeCCCcccc
Q psy14906 570 VWDIPSSQLI 579 (583)
Q Consensus 570 vw~~~~~~~~ 579 (583)
||++++|+..
T Consensus 425 iW~~~~gk~r 434 (435)
T 4e54_B 425 IWSQQEARTR 434 (435)
T ss_dssp ECCCC-----
T ss_pred EEECCcCeee
Confidence 9999998764
No 68
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.5e-40 Score=316.34 Aligned_cols=291 Identities=11% Similarity=0.099 Sum_probs=247.3
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCc------eeEEEeccCCCeEEEEEecC----C---CCEEEEEcCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDE------SLMEFIQTWGPVTALSFRTD----G---PPMMVSGSNT 226 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~~l~s~~~d 226 (583)
+|...|.+++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + + +|++++.|
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~d 90 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVATTSFS 90 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEEEEETT
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc-EEEEEcCC
Confidence 8999999999998 899999999999999999888 78889999999999999999 8 8 89999999
Q ss_pred CcEEEEeCCCCee-----hhhhhhcc-----ccceEEEEEe----cCCCE-EEEEeCCCeEEEEEccC------CCCC-c
Q psy14906 227 GHLTVWNLEDRQV-----ENQIKKAH-----RKVVTGAHFL----YNEPL-LVTSSPDNTLKLWIFDK------ADGN-G 284 (583)
Q Consensus 227 g~i~vwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~-l~s~~~d~~i~~w~~~~------~~~~-~ 284 (583)
|.|++||+.+++. ...+ ..| ...|.+++|+ |++++ |++++.|+.|++|++.. .... .
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 9999999998776 6666 677 5899999999 99999 99999999999998874 2111 1
Q ss_pred eeeEEe-------ccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccC
Q psy14906 285 RLLRIR-------EGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFI 357 (583)
Q Consensus 285 ~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (583)
.....+ ..|...|.+++|+| ++ .+++++.||.|++||+++++....+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------- 225 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFES---------------------- 225 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEEC----------------------
T ss_pred cCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEec----------------------
Confidence 111144 45889999999998 67 999999999999999987654433210
Q ss_pred CCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccC---CCCceEEEEccCCcEEEEEecC-
Q psy14906 358 LPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAK---QSKPTCVYITHCGNFVLIGYSS- 433 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d- 433 (583)
...+ ...+.+++|+|++++|++++.|
T Consensus 226 --------------------------------------------------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~ 255 (397)
T 1sq9_A 226 --------------------------------------------------QHSMINNSNSIRSVKFSPQGSLLAIAHDSN 255 (397)
T ss_dssp --------------------------------------------------CC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred --------------------------------------------------cccccccCCccceEEECCCCCEEEEEecCC
Confidence 0001 2679999999999999999999
Q ss_pred --ceEEEEEcccCccccccCCCCCCC-------------cccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEE
Q psy14906 434 --GHVDRFNIQSGAHRGSYGHDNQPG-------------HVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRS 498 (583)
Q Consensus 434 --g~i~i~d~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 498 (583)
|.|++||+.+++....+ .. |...|.+++|+|++++|++++.||.|++||+.+. +++..
T Consensus 256 ~~g~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~ 328 (397)
T 1sq9_A 256 SFGCITLYETEFGERIGSL-----SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--ERITT 328 (397)
T ss_dssp TEEEEEEEETTTCCEEEEE-----CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEE
T ss_pred CCceEEEEECCCCccccee-----ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--ceeEE
Confidence 99999999999988887 56 9999999999999999999999999999999988 77777
Q ss_pred ee-------c---------------cCCeeeEEeccCC----------cEEEEEeCCceEEEEEccccc
Q psy14906 499 IK-------L---------------DNGISFFRTHQES----------SMLAVCLDDFTVNIIDIDTCT 535 (583)
Q Consensus 499 ~~-------~---------------~~~v~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~ 535 (583)
+. + ...|.+++|+|++ ++|++++.||.|++||+++|+
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 76 3 6789999999998 799999999999999998764
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-39 Score=314.45 Aligned_cols=288 Identities=15% Similarity=0.261 Sum_probs=246.3
Q ss_pred cceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEe--ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeeh
Q psy14906 163 SCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFI--QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVE 240 (583)
Q Consensus 163 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 240 (583)
-.++.|+||++ ++||+|. |++|+|||..+++.+..+. +|...|++++|+|+|+ +|++|+.||.|++||+++++.+
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEE
Confidence 45778999975 5888775 8999999999999887665 6667899999999999 9999999999999999999999
Q ss_pred hhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEE
Q psy14906 241 NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLR 320 (583)
Q Consensus 241 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 320 (583)
..+ .+|...+.++.+ ++.+|++++.|+.+++|+... ....+..+.+|...+..+.++| ++.++++++.|+.++
T Consensus 183 ~~~-~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~---~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~ 255 (420)
T 4gga_A 183 RNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVN 255 (420)
T ss_dssp EEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred EEE-eCCCCceEEEee--CCCEEEEEeCCCceeEeeecc---cceeeEEecccccceeeeeecC-CCCeeeeeeccccce
Confidence 998 899999998877 567999999999999997654 3456677889999999999997 789999999999999
Q ss_pred EEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccce
Q psy14906 321 IFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDM 400 (583)
Q Consensus 321 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 400 (583)
+|+..+++....
T Consensus 256 i~~~~~~~~~~~-------------------------------------------------------------------- 267 (420)
T 4gga_A 256 VWPSAPGEGGWV-------------------------------------------------------------------- 267 (420)
T ss_dssp EEESSCCSSCSC--------------------------------------------------------------------
T ss_pred EEeeccccccce--------------------------------------------------------------------
Confidence 999876432100
Q ss_pred eeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc-EEEE--e
Q psy14906 401 FLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ-IVIS--G 477 (583)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s--~ 477 (583)
..... ..|...|.+++|+|++. ++++ |
T Consensus 268 ---------------------------------------------~~~~~-----~~~~~~V~~~~~~p~~~~~la~~~g 297 (420)
T 4gga_A 268 ---------------------------------------------PLQTF-----TQHQGAVKAVAWCPWQSNVLATGGG 297 (420)
T ss_dssp ---------------------------------------------CSEEE-----CCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred ---------------------------------------------eeeee-----cccCCceeeeeeCCCcccEEEEEee
Confidence 01111 47888999999999764 4544 4
Q ss_pred ecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEe--CCceEEEEEccccceEEeecccccceeeEEecCC
Q psy14906 478 GNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCL--DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPD 555 (583)
Q Consensus 478 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 555 (583)
+.|++|++||+.++ .+...+..+..+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+|.+.|++++|+||
T Consensus 298 s~D~~I~iwd~~t~--~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 298 TSDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp TTTCEEEEEETTTT--EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred cCCCEEEEEeCCcc--ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 58999999999998 8889999999999999999999888765 6899999999999999999999999999999999
Q ss_pred CcEEEEEeCCCeEEEEeCCCccccc
Q psy14906 556 SRWLITASMDCTIRVWDIPSSQLID 580 (583)
Q Consensus 556 ~~~l~s~~~d~~i~vw~~~~~~~~~ 580 (583)
|++||||+.|++|+|||+.+..+.+
T Consensus 376 g~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 376 GATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp SSCEEEEETTTEEEEECCSCSSCC-
T ss_pred CCEEEEEecCCeEEEEECCCCCccc
Confidence 9999999999999999998765544
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-39 Score=311.88 Aligned_cols=312 Identities=16% Similarity=0.188 Sum_probs=251.6
Q ss_pred ceeeeeecccCccEEEE--ccCC-CEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCC-CCCE
Q psy14906 101 IDIVGTYKGHTSPVHLI--LPFG-PHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSP-VVDI 176 (583)
Q Consensus 101 ~~~~~~~~~h~~~v~~i--s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 176 (583)
.+....+.+|...|+++ +|++ ++|++++.||.|++||+.+++....+... +|...|.+++|+| ++++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM---------GPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC---------STTCBEEEEEEETTEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC---------CcCCceeEEEeCCCCCCE
Confidence 34567788999999997 8998 99999999999999999998887776532 6899999999999 7899
Q ss_pred EEEEecCCeEEEEEccCCceeEEEecc---CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEE
Q psy14906 177 IGVGLSNKKIILHNILTDESLMEFIQT---WGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTG 253 (583)
Q Consensus 177 l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 253 (583)
|++++.|+.|++||+.+ +.+..+..+ ...|.+++|+|+++ +|++++.|+.|++||+ +++.+..+ .+|...|.+
T Consensus 134 l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~ 209 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTH 209 (383)
T ss_dssp EEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEE
T ss_pred EEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEE
Confidence 99999999999999985 556666544 37899999999999 9999999999999999 46777777 789999999
Q ss_pred EEEecCCC-EEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEcccccccee
Q psy14906 254 AHFLYNEP-LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKN 332 (583)
Q Consensus 254 ~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 332 (583)
++|+|+++ +|++++.|+.|++||+.........+..+ +|...|.+++|+|.++.+|++++.|+.|++||+.+++....
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 99999999 99999999999999887544335566655 69999999999975789999999999999999998876554
Q ss_pred eccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCC
Q psy14906 333 LGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQ 412 (583)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (583)
+....... .....++. ..|. ..
T Consensus 289 ~~~~~~~~--------------~~~~~~~~-------------------------~~~~-------------------p~ 310 (383)
T 3ei3_B 289 IIIHPHRQ--------------FQHLTPIK-------------------------ATWH-------------------PM 310 (383)
T ss_dssp EEECCBCC--------------CTTSCCCC-------------------------CEEC-------------------SS
T ss_pred cccccccc--------------cccccceE-------------------------Eecc-------------------CC
Confidence 42110000 00000000 0000 01
Q ss_pred CCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccC
Q psy14906 413 SKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 490 (583)
..+..++++|++++ +++.||.|++||+.+++.+..+.. ..|...+..++|+|++++|++++ |+.|++||+++
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~---~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD---PNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB---TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC---CCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 45667888999988 888999999999999999888731 12667888889999999999997 99999999875
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-41 Score=327.84 Aligned_cols=316 Identities=11% Similarity=0.059 Sum_probs=228.2
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcEE----EEeeccCCceEEecccCCcceEEEeeCCC------CCEEEEEecCCeEE
Q psy14906 118 LPFGPHLISVDEESNVKVWDIKAEETY----LELSFDNDTFKIMGKRWNSCVNVLEPSPV------VDIIGVGLSNKKII 187 (583)
Q Consensus 118 s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~~~~d~~i~ 187 (583)
+|+++.+++++.|++|+|||+.+++.. ..+. .|.+.|.+++|+|+ +.+||+++.||+|+
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-----------~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr 238 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-----------HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN 238 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEE-----------ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEE
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-----------ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEE
Confidence 689999999999999999999887642 2333 67789999999997 57999999999999
Q ss_pred EEEccCCce-----------eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee-hhhhhhccccceEEE-
Q psy14906 188 LHNILTDES-----------LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV-ENQIKKAHRKVVTGA- 254 (583)
Q Consensus 188 iw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~- 254 (583)
+||+.+++. ...+.+|...|++++|++++ .|++|+.||+|++||+++++. ...+ .+|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~-~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYD-QVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEE-ECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEe-ecccccEEEEE
Confidence 999986642 34678899999999999864 799999999999999997643 3345 7899999999
Q ss_pred -EEecCC-CEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCC--CCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccc
Q psy14906 255 -HFLYNE-PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSA--PPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSN 330 (583)
Q Consensus 255 -~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 330 (583)
+|+|++ ++|++++.|++|++||+. ..+....+.+|.. .|.+++|+| +++.+++++.|++|++||++++.+.
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~----~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPK----DIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGG----GHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECC----CCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccc
Confidence 578887 899999999999999775 3444445555653 588999998 7889999999999999999876553
Q ss_pred eeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccccccc
Q psy14906 331 KNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQA 410 (583)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 410 (583)
..+. .
T Consensus 391 ~~l~---------------------------------------------------------------------------g 395 (524)
T 2j04_B 391 HPLV---------------------------------------------------------------------------S 395 (524)
T ss_dssp EEEE---------------------------------------------------------------------------E
T ss_pred eeee---------------------------------------------------------------------------c
Confidence 3220 1
Q ss_pred CCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEcc-
Q psy14906 411 KQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFK- 489 (583)
Q Consensus 411 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~- 489 (583)
|...|.+++|+|++++|++|+.||+|++||+..+ ............+...+.+++|+|+++.+. ... .+.+|+..
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~ 471 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTV 471 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC---
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--Cceeccccc
Confidence 2367999999999999999999999999998654 222110000001122578999999998553 222 23344433
Q ss_pred CCCCCceEEe-eccCCeeeEEeccCCc---EEEEEeCCceEEEEEccc
Q psy14906 490 QTGKPPLRSI-KLDNGISFFRTHQESS---MLAVCLDDFTVNIIDIDT 533 (583)
Q Consensus 490 ~~~~~~~~~~-~~~~~v~~~~~s~~~~---~l~~~~~dg~i~i~d~~~ 533 (583)
++ .++..+ .+...|.+++|+|++. .+|+|+.+|.|+||++.-
T Consensus 472 ~g--~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 472 ND--VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CC--cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 22 334333 4567999999999965 999999999999999873
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.8e-40 Score=318.10 Aligned_cols=362 Identities=14% Similarity=0.119 Sum_probs=256.5
Q ss_pred CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCC-CCCEEEEEecCCeEEEEEccCCceeEEEe-------
Q psy14906 130 ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSP-VVDIIGVGLSNKKIILHNILTDESLMEFI------- 201 (583)
Q Consensus 130 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~------- 201 (583)
++.+++|+++.++....+. .|.+.|.+++|+| ++++|++|+.||.|++||+.+++....+.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 90 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVER-----------IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI 90 (408)
T ss_dssp HHHHHHHTEEECTTEEECC-----------CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE
T ss_pred cCcceeeccccCcceeeee-----------ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccc
Confidence 4567888888888777776 8999999999999 99999999999999999999887665543
Q ss_pred ------ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecC---CCEEEEEeCCCeE
Q psy14906 202 ------QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYN---EPLLVTSSPDNTL 272 (583)
Q Consensus 202 ------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i 272 (583)
+|...|.+++|+|++..+|++++.||.|++||+.+++....+ .+...+.++.|++. +.++++++.|+.|
T Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (408)
T 4a11_B 91 GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKV 168 (408)
T ss_dssp CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSE
T ss_pred cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeE
Confidence 488999999999944448999999999999999999988877 47889999999985 4599999999999
Q ss_pred EEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCC-EEEEeeCCCcEEEEEcccccc-ceeeccchhhhhhhhhhcchh
Q psy14906 273 KLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSD-NILSAAGDSTLRIFNTKSETS-NKNLGIASANRNNLKRKNRLE 350 (583)
Q Consensus 273 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 350 (583)
++|++. ....+..+.+|...|.+++|+| ++. .+++++.||.|++||++++.. ...+.....
T Consensus 169 ~~~d~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------ 231 (408)
T 4a11_B 169 QLCDLK----SGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNG------------ 231 (408)
T ss_dssp EEEESS----SSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT------------
T ss_pred EEEeCC----CcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccc------------
Confidence 999775 4566778889999999999998 565 689999999999999987652 221110000
Q ss_pred ccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEE
Q psy14906 351 KMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIG 430 (583)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 430 (583)
............+...+.+++|+|++++++++
T Consensus 232 ------------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 232 ------------------------------------------------KKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp ------------------------------------------------CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------ccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 00000111122334789999999999999999
Q ss_pred ecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEee-ccCCeeeEE
Q psy14906 431 YSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFR 509 (583)
Q Consensus 431 ~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~ 509 (583)
+.||.|++||+.+++....+...........+........+..+++++.|+.|++||+.++ +++..+. +...|.+++
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG--EQITMLKGHYKTVDCCV 341 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC--CEEEEECCCSSCEEEEE
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC--cceeeeccCCCeEEEEE
Confidence 9999999999998887655422111122222333333344566777788999999999998 8888776 557899999
Q ss_pred eccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecC-CCcEEEEEeCCCeEEEEeCC
Q psy14906 510 THQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSP-DSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 510 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~d~~i~vw~~~ 574 (583)
|+|++++|++++.||.|++||+.+++.+.....+... ..+.+ +...+.+.+.|+.+++|+..
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999999887655433222 23333 33445667789999999865
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-39 Score=312.08 Aligned_cols=284 Identities=15% Similarity=0.239 Sum_probs=236.7
Q ss_pred ceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEec-cCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh
Q psy14906 164 CVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQ-TWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242 (583)
Q Consensus 164 ~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 242 (583)
.+.++.|++ ..+++++.|+.|++||+.+++....+.. |...|.+++|+|+++ +|++|+.||.|++||+.+++.+..
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 171 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVESQTKLRT 171 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcCCeEEEE
Confidence 355566664 5577888999999999999998888775 778999999999998 899999999999999999999988
Q ss_pred hhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEE
Q psy14906 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIF 322 (583)
Q Consensus 243 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 322 (583)
+ .+|...|.+++| ++++|++++.|+.|++||+.. .......+.+|...|.+++|+| ++.+|++++.|+.|++|
T Consensus 172 ~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 172 M-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI---ANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIW 244 (401)
T ss_dssp E-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred e-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc---CcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence 8 799999999999 467999999999999997753 2355667778888888888887 77888888888888888
Q ss_pred EccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceee
Q psy14906 323 NTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFL 402 (583)
Q Consensus 323 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 402 (583)
|+.++.
T Consensus 245 d~~~~~-------------------------------------------------------------------------- 250 (401)
T 4aez_A 245 DARSSI-------------------------------------------------------------------------- 250 (401)
T ss_dssp ETTCSS--------------------------------------------------------------------------
T ss_pred cCCCCC--------------------------------------------------------------------------
Confidence 875432
Q ss_pred ecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc-EEEEee--c
Q psy14906 403 VPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ-IVISGG--N 479 (583)
Q Consensus 403 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~--~ 479 (583)
....+ ..|...|.+++|+|++. ++++++ .
T Consensus 251 -------------------------------------------~~~~~-----~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 251 -------------------------------------------PKFTK-----TNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp -------------------------------------------EEEEE-----CCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred -------------------------------------------ccEEe-----cCCcceEEEEEECCCCCCEEEEecCCC
Confidence 22222 57888999999999764 556654 7
Q ss_pred CCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEE--eCCceEEEEEccccceE--EeecccccceeeEEecCC
Q psy14906 480 DQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVC--LDDFTVNIIDIDTCTII--RKLSGHMGQLTDADFSPD 555 (583)
Q Consensus 480 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~i~d~~~~~~~--~~~~~h~~~v~~l~~s~d 555 (583)
|+.|++||+.++ +++..+.+...+.+++|+|++++++++ +.||.|++||+.+++.. ..+.+|...|.+++|+|+
T Consensus 283 d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 283 DKQIHFWNAATG--ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp TCEEEEEETTTC--CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred CCEEEEEECCCC--CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence 999999999998 888899888999999999999999995 48999999999986554 447789999999999999
Q ss_pred CcEEEEEeCCCeEEEEeCCCcccccc
Q psy14906 556 SRWLITASMDCTIRVWDIPSSQLIDC 581 (583)
Q Consensus 556 ~~~l~s~~~d~~i~vw~~~~~~~~~~ 581 (583)
+++|++++.||.|++|++.+++.+..
T Consensus 361 g~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC------
T ss_pred CCEEEEEeCCCcEEEEECCCCccccc
Confidence 99999999999999999999987754
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-41 Score=324.33 Aligned_cols=339 Identities=9% Similarity=0.019 Sum_probs=236.7
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCC--ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTD--ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR 237 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 237 (583)
.+..+|.+++|+|++++||+|+.|+.|++||+.++ +.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSSEEEC-----
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCC
Confidence 45679999999999999999999999999999988 78888999999999999999998 8999999999999999987
Q ss_pred e---ehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEecc-CCCCCeeEEEeeCCCCEEEEe
Q psy14906 238 Q---VENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREG-HSAPPNYIQFYGNSSDNILSA 313 (583)
Q Consensus 238 ~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~ 313 (583)
+ ....+ .+|...|.+++|+|++++|++++.|+.|++|+++... .......+.. |...|.+++|+| ++++|+++
T Consensus 88 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~ 164 (377)
T 3dwl_C 88 GTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN-DWWVSKHLKRPLRSTILSLDWHP-NNVLLAAG 164 (377)
T ss_dssp -CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEEECSSCCSCEEEEEECT-TSSEEEEE
T ss_pred CceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc-cceeeeEeecccCCCeEEEEEcC-CCCEEEEE
Confidence 7 45555 6899999999999999999999999999999775322 1224566777 999999999998 89999999
Q ss_pred eCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecC
Q psy14906 314 AGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFY 393 (583)
Q Consensus 314 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 393 (583)
+.|+.|++||+............. |...
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~----------------------------------------------------~~~~ 192 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASV----------------------------------------------------WGSR 192 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCS----------------------------------------------------SCSC
T ss_pred eCCCEEEEEEEEecccCCCccccc----------------------------------------------------cccc
Confidence 999999999997654321110000 0000
Q ss_pred cccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcc----ccccCCCCCCCcccCeeEEEEeC
Q psy14906 394 KSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAH----RGSYGHDNQPGHVGGVRGVVSDN 469 (583)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~h~~~v~~~~~s~ 469 (583)
. ........+ .+...+.+++|+|++++|++++.||.|++||+.+++. +..+ ..|...|.+++|+|
T Consensus 193 ---~-~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~ 261 (377)
T 3dwl_C 193 ---L-PFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV-----KLSQLPLRSLLWAN 261 (377)
T ss_dssp ---C-CEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE-----ECSSSCEEEEEEEE
T ss_pred ---c-chhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee-----cCCCCceEEEEEcC
Confidence 0 000000011 3447899999999999999999999999999999887 5666 78999999999999
Q ss_pred CCcEEEEeecCCcEEEEEccCCCCCceEEeeccC----------------CeeeEEeccCCcEEEEEeCCceEEEEEccc
Q psy14906 470 LNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDN----------------GISFFRTHQESSMLAVCLDDFTVNIIDIDT 533 (583)
Q Consensus 470 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 533 (583)
++++|++++.|+.+ +|+......+....+.... ...++.|++....+......+...
T Consensus 262 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------ 334 (377)
T 3dwl_C 262 ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ------ 334 (377)
T ss_dssp TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------------------------
T ss_pred CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc------
Confidence 99999999876655 7776643222222222211 123333333322222211111111
Q ss_pred cceEEeecccccceeeEEecCCC-c---EEEEEeCCCeEEEEeC
Q psy14906 534 CTIIRKLSGHMGQLTDADFSPDS-R---WLITASMDCTIRVWDI 573 (583)
Q Consensus 534 ~~~~~~~~~h~~~v~~l~~s~d~-~---~l~s~~~d~~i~vw~~ 573 (583)
........|...|+++++.++. . .|+|++.||.|++||+
T Consensus 335 -~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 335 -SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ---CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred -cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1222345699999999976543 3 6999999999999985
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.6e-40 Score=309.98 Aligned_cols=287 Identities=13% Similarity=0.190 Sum_probs=221.4
Q ss_pred CCeEEEEEecCCCCEEEEEcCCC-------cEEEEeCCCCeehh----------hhhhccccceEEEEEecCCCEEEEE-
Q psy14906 205 GPVTALSFRTDGPPMMVSGSNTG-------HLTVWNLEDRQVEN----------QIKKAHRKVVTGAHFLYNEPLLVTS- 266 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~s~- 266 (583)
.||++++|+||++ +|++|+.+. .|++|++..+.... .+ .+|...+.+++++ ++.++++
T Consensus 15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeC--CCEEEEEE
Confidence 5899999999999 899886533 59999987654322 22 4567778777664 5566655
Q ss_pred ----------eCCCeEEEEEccCCCCCceeeEEec-----cCCCCCeeEEEeeCCCCEEEEe--eCCCcEEEEEcccccc
Q psy14906 267 ----------SPDNTLKLWIFDKADGNGRLLRIRE-----GHSAPPNYIQFYGNSSDNILSA--AGDSTLRIFNTKSETS 329 (583)
Q Consensus 267 ----------~~d~~i~~w~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~ 329 (583)
+.|+.+++|+++............. .+...+..++|+| ||++++++ +.|++|++||+.+++.
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcE
Confidence 4578899998875443333333222 2345578999998 89887654 4789999999988765
Q ss_pred ceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccc
Q psy14906 330 NKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQ 409 (583)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 409 (583)
...+.
T Consensus 170 ~~~~~--------------------------------------------------------------------------- 174 (365)
T 4h5i_A 170 KFEIE--------------------------------------------------------------------------- 174 (365)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred EEEeC---------------------------------------------------------------------------
Confidence 44331
Q ss_pred cCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCC----cEEE
Q psy14906 410 AKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQ----TVKV 485 (583)
Q Consensus 410 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg----~i~i 485 (583)
+...|.+++|+|||+++++++.+ .+.+|+..+++....... ..|...|.+++|+|+++++++++.|+ .+++
T Consensus 175 -~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 175 -TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD---FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp -CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC---CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred -CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec---CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 11569999999999999999855 477777777766543322 57899999999999999999999887 6888
Q ss_pred EEccCCCCCce--EEe-eccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEe-ecccccceeeEEecCCCcEEEE
Q psy14906 486 WHFKQTGKPPL--RSI-KLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRK-LSGHMGQLTDADFSPDSRWLIT 561 (583)
Q Consensus 486 wd~~~~~~~~~--~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s 561 (583)
|++........ ..+ .+..+|++++|+|||++||+|+.|++|+|||+++++++.. +.+|...|++|+|||||++|||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS 329 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS 329 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence 98876521111 222 3456899999999999999999999999999999999987 5799999999999999999999
Q ss_pred EeCCCeEEEEeCCCc
Q psy14906 562 ASMDCTIRVWDIPSS 576 (583)
Q Consensus 562 ~~~d~~i~vw~~~~~ 576 (583)
+|.|++|+||++..+
T Consensus 330 ~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 330 VSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSEEEEEECCTT
T ss_pred EeCCCeEEEEEcCCC
Confidence 999999999999654
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.6e-40 Score=318.21 Aligned_cols=358 Identities=13% Similarity=0.105 Sum_probs=252.1
Q ss_pred CCeEEEEecc-ceeeeeecccCccEEEE--cc-CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEE--ecccCCcc
Q psy14906 91 NNIIYAWRRG-IDIVGTYKGHTSPVHLI--LP-FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKI--MGKRWNSC 164 (583)
Q Consensus 91 ~~~i~vw~~~-~~~~~~~~~h~~~v~~i--s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 164 (583)
++.+++|+.. .+....+.+|.++|+++ +| ++++|++++.||.|++||+.+++....+......... ...+|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 3456677753 45567788999999997 88 9999999999999999999987654333211000000 00158999
Q ss_pred eEEEeeCC-CCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCC--CEEEEEcCCCcEEEEeCCCCeehh
Q psy14906 165 VNVLEPSP-VVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGP--PMMVSGSNTGHLTVWNLEDRQVEN 241 (583)
Q Consensus 165 i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~ 241 (583)
|.+++|+| ++++|++++.||.|++||+.+++.+..+. +...+.++.|+|.+. .++++++.++.|++||+.+++.+.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee
Confidence 99999999 78899999999999999999999888887 448999999998533 289999999999999999999888
Q ss_pred hhhhccccceEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCCceeeEEe---------------ccCCCCCeeEEEeeC
Q psy14906 242 QIKKAHRKVVTGAHFLYNEP-LLVTSSPDNTLKLWIFDKADGNGRLLRIR---------------EGHSAPPNYIQFYGN 305 (583)
Q Consensus 242 ~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~ 305 (583)
.+ .+|...|.+++|+|+++ +|++++.|+.|++||+.... ..+..+ ..|...|.+++|+|
T Consensus 181 ~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 255 (408)
T 4a11_B 181 IL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS---GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS- 255 (408)
T ss_dssp EE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS---CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-
T ss_pred ee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC---cccccccccccccceeeccccccccCceeEEEEcC-
Confidence 88 78999999999999998 58999999999999875432 122222 57889999999997
Q ss_pred CCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCc
Q psy14906 306 SSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKN 385 (583)
Q Consensus 306 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (583)
++++|++++.||.|++||+.+++..........
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----------------------------------------------- 288 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC----------------------------------------------- 288 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-----------------------------------------------
T ss_pred CCCEEEEecCCCeEEEEECCCCccceecccccc-----------------------------------------------
Confidence 899999999999999999988765432210000
Q ss_pred eEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEE
Q psy14906 386 KVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGV 465 (583)
Q Consensus 386 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~ 465 (583)
......+........+..+++++.++.|++||+.+++.+..+ .+|...|+++
T Consensus 289 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~v~~~ 340 (408)
T 4a11_B 289 -----------------------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-----KGHYKTVDCC 340 (408)
T ss_dssp -----------------------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-----CCCSSCEEEE
T ss_pred -----------------------ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-----ccCCCeEEEE
Confidence 000011222223344566777788999999999999999988 7899999999
Q ss_pred EEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEecc-CCcEEEEEeCCceEEEEEccc
Q psy14906 466 VSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ-ESSMLAVCLDDFTVNIIDIDT 533 (583)
Q Consensus 466 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~ 533 (583)
+|+|++++|++++.||.|++||+.+. +++.......... .+.+ ....+...+.++.+++|+...
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWVPSLY--EPVPDDDETTTKS--QLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred EEcCCCCEEEEECCCCeEEEEeCCCC--CccCCCCceEecc--ccccccceeecccCccCceeecCCcc
Confidence 99999999999999999999999988 5554443332222 2232 333555677889999998753
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.1e-39 Score=307.91 Aligned_cols=297 Identities=13% Similarity=0.123 Sum_probs=248.0
Q ss_pred eecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCc--EEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe
Q psy14906 106 TYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEE--TYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL 181 (583)
Q Consensus 106 ~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 181 (583)
.+..|..+|+++ +|++++|++++.|+.|++||+.+++ .+..+. .|...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----------EHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----------CCSSCEEEEEEETTTTEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-----------CCCCcccEEEEeCCCCEEEEEc
Confidence 355689999987 9999999999999999999999987 777777 8999999999999999999999
Q ss_pred cCCeEEEEEccCCceeEEE--eccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee---hhhhhhccccceEEEEE
Q psy14906 182 SNKKIILHNILTDESLMEF--IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV---ENQIKKAHRKVVTGAHF 256 (583)
Q Consensus 182 ~d~~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~ 256 (583)
.|+.|++||+.+++....+ ..|...|.+++|+|+++ +|++++.|+.|++||++.++. ...+..+|...|.+++|
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 9999999999988755544 57889999999999998 899999999999999987652 33333678999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCC--------------CCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEE
Q psy14906 257 LYNEPLLVTSSPDNTLKLWIFDKA--------------DGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIF 322 (583)
Q Consensus 257 ~~~~~~l~s~~~d~~i~~w~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 322 (583)
+|++++|++++.|+.+++||+... ......+..+.+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEE
Confidence 999999999999999999986421 124577788889999999999997 78999999999999999
Q ss_pred EccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceee
Q psy14906 323 NTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFL 402 (583)
Q Consensus 323 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 402 (583)
|+.+++....+.
T Consensus 230 d~~~~~~~~~~~-------------------------------------------------------------------- 241 (372)
T 1k8k_C 230 DADKKMAVATLA-------------------------------------------------------------------- 241 (372)
T ss_dssp EGGGTTEEEEEE--------------------------------------------------------------------
T ss_pred ECCCCceeEEEc--------------------------------------------------------------------
Confidence 998776544321
Q ss_pred ecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEccc--Ccc--ccccC---------------------------
Q psy14906 403 VPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQS--GAH--RGSYG--------------------------- 451 (583)
Q Consensus 403 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~~~--~~~~~--------------------------- 451 (583)
.+...+.+++|+|+++++++| .|+.|++|++.+ +.. ...+.
T Consensus 242 -------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 242 -------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp -------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred -------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 112578999999999999888 899999999988 421 00000
Q ss_pred -----CCCCCCcccCeeEEEEe-CCC---cEEEEeecCCcEEEEEccCC
Q psy14906 452 -----HDNQPGHVGGVRGVVSD-NLN---QIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 452 -----~~~~~~h~~~v~~~~~s-~~~---~~l~s~~~dg~i~iwd~~~~ 491 (583)
.....+|...|++++|. +++ ++|++++.||.|++|++.+.
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 11114899999999966 666 99999999999999999764
No 78
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=297.23 Aligned_cols=291 Identities=18% Similarity=0.265 Sum_probs=250.7
Q ss_pred ceeeeeecccCccEEEE-ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEE
Q psy14906 101 IDIVGTYKGHTSPVHLI-LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGV 179 (583)
Q Consensus 101 ~~~~~~~~~h~~~v~~i-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 179 (583)
.+..+.+.+|.+.|+++ .|++++|++++.||.|++||+.+++....+. .|...|.+++|+|++++|++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~ 76 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY-----------TGQGFLNSVCYDSEKELLLF 76 (313)
T ss_dssp CEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE-----------ECSSCEEEEEEETTTTEEEE
T ss_pred HHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEee-----------cCCccEEEEEECCCCCEEEE
Confidence 36788899999999997 6899999999999999999999998888887 88999999999999999999
Q ss_pred EecCCeEEEEEccCC---ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEE
Q psy14906 180 GLSNKKIILHNILTD---ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHF 256 (583)
Q Consensus 180 ~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 256 (583)
++.|+.|++|++... +.+..+..|...|.+++| +++ ++++++.||.|++|| .++....+ ..|...+.+++|
T Consensus 77 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~ 150 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG-VVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKV 150 (313)
T ss_dssp EETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEE
T ss_pred ecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC-EEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEE
Confidence 999999999998654 567788899999999999 445 899999999999999 56777777 789999999999
Q ss_pred ec-CCCEEEEEeCCCeEEEEEccCCCCCceeeEEecc-CCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeec
Q psy14906 257 LY-NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREG-HSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334 (583)
Q Consensus 257 ~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 334 (583)
.| +++++++++.|+.+++|| .......+.. |...+.+++|+| ++. +++++.||.|++||+.+++....+.
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d------~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQ------NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEE------TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEe------cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 98 899999999999999996 2355566666 899999999998 566 9999999999999998765543321
Q ss_pred cchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCC
Q psy14906 335 IASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSK 414 (583)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (583)
.+...
T Consensus 223 ---------------------------------------------------------------------------~~~~~ 227 (313)
T 3odt_A 223 ---------------------------------------------------------------------------GHESF 227 (313)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred ---------------------------------------------------------------------------cCCce
Confidence 12267
Q ss_pred ceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCC
Q psy14906 415 PTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKP 494 (583)
Q Consensus 415 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 494 (583)
+.+++|+|++ .+++++.||.|++||+.+++....+ ..|...|.+++|+|+++ +++++.||.|++||+.++ +
T Consensus 228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~--~ 298 (313)
T 3odt_A 228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI-----TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS--R 298 (313)
T ss_dssp EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE-----ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG--G
T ss_pred EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE-----eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC--c
Confidence 9999999999 6889999999999999999998888 68889999999999998 667899999999999987 4
Q ss_pred ceEEee
Q psy14906 495 PLRSIK 500 (583)
Q Consensus 495 ~~~~~~ 500 (583)
......
T Consensus 299 ~~~~~~ 304 (313)
T 3odt_A 299 WASEDE 304 (313)
T ss_dssp CCC---
T ss_pred eeehhh
Confidence 444433
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-39 Score=309.73 Aligned_cols=295 Identities=16% Similarity=0.216 Sum_probs=247.6
Q ss_pred eeeecccCcc--EEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe
Q psy14906 104 VGTYKGHTSP--VHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL 181 (583)
Q Consensus 104 ~~~~~~h~~~--v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 181 (583)
+....+|... +.++++++..+++++.|+.|++||+.+++....+.. .|...|.+++|+|++++|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~----------~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET----------DESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC----------CTTCCEEEEEECTTSSEEEEEE
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec----------CCCCCEEEEEECCCCCEEEEEC
Confidence 3344466554 444677788899999999999999999998887762 4789999999999999999999
Q ss_pred cCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC-CCeehhhhhhccccceEEEEEecCC
Q psy14906 182 SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLE-DRQVENQIKKAHRKVVTGAHFLYNE 260 (583)
Q Consensus 182 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 260 (583)
.||.|++||+.+++.+..+.+|...|.+++|++ + ++++++.||.|++||++ .+.....+ .+|...|.+++|+|++
T Consensus 154 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGTL-QGHSSEVCGLAWRSDG 229 (401)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTS
T ss_pred CCCeEEEEECcCCeEEEEecCCCCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeEE-cCCCCCeeEEEEcCCC
Confidence 999999999999999999999999999999954 4 89999999999999998 45556666 7899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee--CCCcEEEEEccccccceeeccchh
Q psy14906 261 PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA--GDSTLRIFNTKSETSNKNLGIASA 338 (583)
Q Consensus 261 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 338 (583)
++|++++.|+.|++||+. .......+..|...|.+++|+|.....+++++ .|+.|++||+.+++....+..
T Consensus 230 ~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--- 302 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--- 302 (401)
T ss_dssp SEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---
T ss_pred CEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---
Confidence 999999999999999775 45677788899999999999985556677765 799999999988765443311
Q ss_pred hhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEE
Q psy14906 339 NRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCV 418 (583)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 418 (583)
...+.++
T Consensus 303 -------------------------------------------------------------------------~~~v~~~ 309 (401)
T 4aez_A 303 -------------------------------------------------------------------------GSQVTSL 309 (401)
T ss_dssp -------------------------------------------------------------------------SSCEEEE
T ss_pred -------------------------------------------------------------------------CCcEEEE
Confidence 1568999
Q ss_pred EEccCCcEEEE--EecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCce
Q psy14906 419 YITHCGNFVLI--GYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPL 496 (583)
Q Consensus 419 ~~s~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 496 (583)
+|+|+++++++ |+.||.|++||+.++........ .+|...|.+++|+|++++|++++.||.|++|++.++ +.+
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~--~~~ 384 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG--DHV 384 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--ccc
Confidence 99999999999 55899999999998765544311 589999999999999999999999999999999887 444
Q ss_pred E
Q psy14906 497 R 497 (583)
Q Consensus 497 ~ 497 (583)
.
T Consensus 385 ~ 385 (401)
T 4aez_A 385 K 385 (401)
T ss_dssp -
T ss_pred c
Confidence 3
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-38 Score=308.46 Aligned_cols=278 Identities=16% Similarity=0.249 Sum_probs=240.6
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCcee
Q psy14906 118 LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESL 197 (583)
Q Consensus 118 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 197 (583)
|+ ++.||+|. |++|+|||..+|+....+... +|...|++++|+|+|++||+|+.||.|++||+++++.+
T Consensus 114 S~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~---------~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 114 SS-GNVLAVAL-DNSVYLWSASSGDILQLLQME---------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp CT-TSEEEEEE-TTEEEEEETTTCCEEEEEECC---------STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CC-CCEEEEEe-CCEEEEEECCCCCEEEEEEec---------CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 54 35677665 999999999999988877644 77889999999999999999999999999999999999
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe-ehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy14906 198 MEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ-VENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWI 276 (583)
Q Consensus 198 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 276 (583)
..+.+|...+.++++++ . +|++|+.|+.+++||..... .+..+ .+|...+..+.|+|+++++++++.|+.+++|+
T Consensus 183 ~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 183 RNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEe-cccccceeeeeecCCCCeeeeeeccccceEEe
Confidence 99999999999988764 4 89999999999999998654 44555 78999999999999999999999999999998
Q ss_pred ccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEe--eCCCcEEEEEccccccceeeccchhhhhhhhhhcchhcccc
Q psy14906 277 FDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSA--AGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNE 354 (583)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (583)
..........+.....|...|.+++|+|.+...++++ +.|++|++||+.++.....+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~------------------- 319 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA------------------- 319 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-------------------
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-------------------
Confidence 7655444556677888999999999999777777664 5799999999988765543311
Q ss_pred ccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe--c
Q psy14906 355 KFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY--S 432 (583)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~ 432 (583)
...+.++.|+|+++.+++++ .
T Consensus 320 ---------------------------------------------------------~~~v~~~~~~~~~~~lv~~sg~~ 342 (420)
T 4gga_A 320 ---------------------------------------------------------HSQVCSILWSPHYKELISGHGFA 342 (420)
T ss_dssp ---------------------------------------------------------SSCEEEEEEETTTTEEEEEECTT
T ss_pred ---------------------------------------------------------ccceeeeeecCCCCeEEEEEecC
Confidence 14688999999999888765 7
Q ss_pred CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 433 SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 433 dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
||.|++||+.+++.+..+ .+|.+.|++++|+|++++|++|+.|++|++||+...
T Consensus 343 d~~I~iwd~~~~~~v~~l-----~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 343 QNQLVIWKYPTMAKVAEL-----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TCCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 899999999999999998 899999999999999999999999999999999876
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.5e-39 Score=305.76 Aligned_cols=295 Identities=15% Similarity=0.194 Sum_probs=237.1
Q ss_pred cCCcceEEEeeCCCCCEE-EEEec---CCeEEEEEccCCceeEEEe-ccCCCeEEEEEecC---CCCEEEEEcCCCcEEE
Q psy14906 160 RWNSCVNVLEPSPVVDII-GVGLS---NKKIILHNILTDESLMEFI-QTWGPVTALSFRTD---GPPMMVSGSNTGHLTV 231 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l-~~~~~---d~~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~v 231 (583)
+|...|.+++|+|++..+ ++++. |+.|++||+.+++...... +|...|.+++|+|+ +. +|++++.||.|++
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i 94 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR-YLATGDFGGNLHI 94 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTC-CEEEEETTSCEEE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCc-eEEEecCCCeEEE
Confidence 799999999999999655 55655 8999999999887765543 78899999999999 46 8999999999999
Q ss_pred EeCCCCe-ehhhhhhccccceEEEEE------ecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCC----CCeeE
Q psy14906 232 WNLEDRQ-VENQIKKAHRKVVTGAHF------LYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSA----PPNYI 300 (583)
Q Consensus 232 wd~~~~~-~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~----~v~~~ 300 (583)
||+.+++ .+..+ .+|...|.++.| +|++++|++++.|+.|++||+... ...+..+..|.. .+.++
T Consensus 95 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 95 WNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK---DDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp ECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC---SSCSEEECCCTTSCCCCEEEE
T ss_pred EeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC---CCcceeccccCCCCCCceEEE
Confidence 9999887 77777 789999999955 688999999999999999976532 124455554443 78888
Q ss_pred E----EeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeeccccccccc
Q psy14906 301 Q----FYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNN 376 (583)
Q Consensus 301 ~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (583)
+ |+| ++.++++++.||.|++||+++++.....
T Consensus 171 ~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------------------------------- 206 (357)
T 3i2n_A 171 AFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWET------------------------------------------- 206 (357)
T ss_dssp EEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEE-------------------------------------------
T ss_pred EEEeccCC-CCCEEEEEccCCeEEEEECccCceeeec-------------------------------------------
Confidence 8 455 8999999999999999999876542211
Q ss_pred EEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc---CCcEEEEEecCceEEEEEcccCccccccCCC
Q psy14906 377 IAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH---CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHD 453 (583)
Q Consensus 377 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 453 (583)
.+...+.+++|+| +++++++++.||.|++||+.+++....+...
T Consensus 207 ---------------------------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 253 (357)
T 3i2n_A 207 ---------------------------------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV 253 (357)
T ss_dssp ---------------------------------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE
T ss_pred ---------------------------------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee
Confidence 1115799999999 9999999999999999999988776665211
Q ss_pred CCCCcccCeeEEEEeCCCc-EEEEeecCCcEEEEEccCCCCC-----------------ceEEee-ccCCeeeEEeccCC
Q psy14906 454 NQPGHVGGVRGVVSDNLNQ-IVISGGNDQTVKVWHFKQTGKP-----------------PLRSIK-LDNGISFFRTHQES 514 (583)
Q Consensus 454 ~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~-----------------~~~~~~-~~~~v~~~~~s~~~ 514 (583)
...+|...|++++|+|+++ +|++++.||.|++||+...... ++..+. +...|.+++|+|++
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 333 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK 333 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC
Confidence 1128999999999999998 8999999999999999865322 233333 45689999999999
Q ss_pred cEEE-EEeCCceEEEEEccccce
Q psy14906 515 SMLA-VCLDDFTVNIIDIDTCTI 536 (583)
Q Consensus 515 ~~l~-~~~~dg~i~i~d~~~~~~ 536 (583)
++|+ +++.|+.|++||+.+.+.
T Consensus 334 ~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 334 RGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TTEEEEEETTSEEEEEEECC---
T ss_pred CeEEEEecCCCcEEEEECCCccc
Confidence 9998 799999999999987654
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=295.05 Aligned_cols=284 Identities=14% Similarity=0.243 Sum_probs=240.6
Q ss_pred ceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEe--ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehh
Q psy14906 164 CVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFI--QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVEN 241 (583)
Q Consensus 164 ~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 241 (583)
..++|+||+++ +||+| .|++|+|||+.+++.+..+. +|...|++++|+|+++ +|++|+.||+|++||+++++++.
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEE
Confidence 35789999886 77776 58999999999999888765 6777899999999999 99999999999999999999999
Q ss_pred hhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEE
Q psy14906 242 QIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRI 321 (583)
Q Consensus 242 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 321 (583)
.+ .+|...+.++. +++..+++++.++.+++|+... ....+..+.+|...+..+.+.+ +++++++++.|+.|++
T Consensus 104 ~~-~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 104 NM-TSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNV 176 (318)
T ss_dssp EE-ECCSSCEEEEE--EETTEEEEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred Ee-cCccceEEEee--cCCCEEEEEecCCceEeeecCC---CceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeE
Confidence 88 78998887655 4677999999999999996543 3456677888999999999986 7899999999999999
Q ss_pred EEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccccccee
Q psy14906 322 FNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMF 401 (583)
Q Consensus 322 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 401 (583)
||+.+++.....
T Consensus 177 wd~~~~~~~~~~-------------------------------------------------------------------- 188 (318)
T 4ggc_A 177 WPSAPGEGGWVP-------------------------------------------------------------------- 188 (318)
T ss_dssp EESSCBTTBSCC--------------------------------------------------------------------
T ss_pred EECCCCcccccc--------------------------------------------------------------------
Confidence 998765422110
Q ss_pred eecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcE---EEEee
Q psy14906 402 LVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQI---VISGG 478 (583)
Q Consensus 402 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~---l~s~~ 478 (583)
.... ..|.+.|.+++++|++.. +++++
T Consensus 189 ---------------------------------------------~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 189 ---------------------------------------------LQTF-----TQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp ---------------------------------------------SEEE-----CCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred ---------------------------------------------eeee-----cccCCceEEEEecCCCCcEEEEEecC
Confidence 0001 456777888888887653 34677
Q ss_pred cCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEe--CCceEEEEEccccceEEeecccccceeeEEecCCC
Q psy14906 479 NDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCL--DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDS 556 (583)
Q Consensus 479 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~ 556 (583)
.++.|++||.... .......+...+..+.|+|+++.+++++ .|+.|++||+.+++++.++.+|.+.|++++|+||+
T Consensus 219 ~~~~i~lwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 219 SDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 296 (318)
T ss_dssp TTCEEEEEETTTC--CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCCEEEEEecccc--cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 8999999999988 7778888888999999999999887765 78999999999999999999999999999999999
Q ss_pred cEEEEEeCCCeEEEEeCCCcc
Q psy14906 557 RWLITASMDCTIRVWDIPSSQ 577 (583)
Q Consensus 557 ~~l~s~~~d~~i~vw~~~~~~ 577 (583)
++|||++.|++|+|||+.+..
T Consensus 297 ~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 297 ATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SCEEEEETTTEEEEECCSCCC
T ss_pred CEEEEEecCCeEEEEECCCCC
Confidence 999999999999999997654
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-41 Score=320.93 Aligned_cols=322 Identities=11% Similarity=0.066 Sum_probs=251.9
Q ss_pred ccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeE
Q psy14906 109 GHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKI 186 (583)
Q Consensus 109 ~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 186 (583)
.-...|.++ +|||+++|+++.|++|+ |...++.+ . +|...|.+++|+|+| .++.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~-----------gh~~~v~~V~FsPdg-------~~~~~ 69 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---N-----------CNSKNLFHVKEFPLE-------FENKL 69 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---S-----------SBGGGTEEEEEECCC-------CCCTT
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---c-----------CCCccEEEEEECCCC-------CcceE
Confidence 445667776 99999999999999999 76655433 4 899999999999999 45555
Q ss_pred EEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhcccc-----ceEEEEEecCCC
Q psy14906 187 ILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRK-----VVTGAHFLYNEP 261 (583)
Q Consensus 187 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~ 261 (583)
.+|+.+ +..+..+ .|...|.+++|+|+|. +|++++.||.|++||.+. ++..+ . |.. .+.+++|+|||+
T Consensus 70 ~~~~~~-~~~~~~~-~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~ 142 (588)
T 2j04_A 70 DFELAQ-QNGLLNS-QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIES 142 (588)
T ss_dssp TTSCCC-SSCSSTT-SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSS
T ss_pred EEEeCC-CceEeec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCC
Confidence 555543 2222222 4478999999999999 899999999999999654 55556 4 554 599999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCCC-c--eeeEEe----ccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeec
Q psy14906 262 LLVTSSPDNTLKLWIFDKADGN-G--RLLRIR----EGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLG 334 (583)
Q Consensus 262 ~l~s~~~d~~i~~w~~~~~~~~-~--~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 334 (583)
+|++|+.||+|++|++...... . -.+.++ .+|...|.+++|+| ++ +++++.|+++++||+.++......
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~- 218 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVS- 218 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCE-
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccce-
Confidence 9999999999999977532100 0 135665 67888999999997 67 888999999999999776532100
Q ss_pred cchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCC
Q psy14906 335 IASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSK 414 (583)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (583)
..+...|...
T Consensus 219 ----------------------------------------------------------------------~tL~~~h~~~ 228 (588)
T 2j04_A 219 ----------------------------------------------------------------------RMIQNASRRK 228 (588)
T ss_dssp ----------------------------------------------------------------------EEEECCCSSC
T ss_pred ----------------------------------------------------------------------eeecccccCc
Confidence 0000112257
Q ss_pred ceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEE--eCCCcEEEEeecCCcEEEEEccCCC
Q psy14906 415 PTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVS--DNLNQIVISGGNDQTVKVWHFKQTG 492 (583)
Q Consensus 415 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~ 492 (583)
|.+++|+ |+.+++++ ++.|++||+.+++..... .+|...|..++| +|++..|++++.||+ ++|..+
T Consensus 229 V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--- 296 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--- 296 (588)
T ss_dssp CCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---
T ss_pred EEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---
Confidence 9999999 68888887 699999999988774333 489999999999 999999999999999 999976
Q ss_pred CCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeC
Q psy14906 493 KPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASM 564 (583)
Q Consensus 493 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 564 (583)
.++++||+..++.. |+++++|+...+. +..+.+ ...|.+++|||||+.+|+++.
T Consensus 297 --------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 --------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp --------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred --------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 26699999988875 9999999986554 445554 778999999999999998873
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.1e-38 Score=300.28 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=214.0
Q ss_pred eecCCCCCCeEEEEeeC-------eEEEEEcCCeEEEEecc-ceeeeeecc-----cCccEEEE--ccC----CCEEEEE
Q psy14906 67 SVSPQHEDDITCLSSDF-------FHIYTSANNIIYAWRRG-IDIVGTYKG-----HTSPVHLI--LPF----GPHLISV 127 (583)
Q Consensus 67 ~~~~~h~~~v~~~~~~~-------~~~~~~~~~~i~vw~~~-~~~~~~~~~-----h~~~v~~i--s~~----~~~l~s~ 127 (583)
....+|..+|++++|++ .+++++.++.|++||.. ++.+..+.. |...|.++ +|+ +++|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 34568999999999963 38888888999999975 455555553 56779887 787 6799999
Q ss_pred eCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCC-CCCEEEEEecCCeEEEEEccCCceeEEE---ecc
Q psy14906 128 DEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSP-VVDIIGVGLSNKKIILHNILTDESLMEF---IQT 203 (583)
Q Consensus 128 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~ 203 (583)
+.||.|++||+.+++.+..+. +|...|.+++|+| ++++|++++.||.|++||+.+++.+..+ ..|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYV-----------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEE-----------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred cCCCEEEEEEchhceEeeeec-----------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 999999999999999999887 8999999999999 9999999999999999999999999988 689
Q ss_pred CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhc----------------------------cccceEEEE
Q psy14906 204 WGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKA----------------------------HRKVVTGAH 255 (583)
Q Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----------------------------~~~~v~~~~ 255 (583)
...|.+++|+|+++ +|++++.||.|++||+++++....+ .. |...|.+++
T Consensus 161 ~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 161 RDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAI-KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHH-HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred cCceeEEEECCCCC-EEEEecCCCCEEEEECCCCcccccc-ceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 99999999999998 8999999999999999988877766 33 899999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCC----------CceeeEEeccCCCCCeeEEEeeCC--CCEEEEeeCCCcEEEEE
Q psy14906 256 FLYNEPLLVTSSPDNTLKLWIFDKADG----------NGRLLRIREGHSAPPNYIQFYGNS--SDNILSAAGDSTLRIFN 323 (583)
Q Consensus 256 ~~~~~~~l~s~~~d~~i~~w~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd 323 (583)
|+ +++|++++.|+.|++||+..... ....+..+..|...|.+++|+| + +++|++++.||.|++||
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEE
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEE
Confidence 98 77999999999999998754321 1245777888999999999998 6 89999999999999999
Q ss_pred cccccc
Q psy14906 324 TKSETS 329 (583)
Q Consensus 324 ~~~~~~ 329 (583)
+.+++.
T Consensus 316 ~~~~~~ 321 (366)
T 3k26_A 316 LEVEDP 321 (366)
T ss_dssp CCSSSG
T ss_pred CCCCCC
Confidence 887653
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.6e-39 Score=313.78 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=226.8
Q ss_pred cCCcceEEEeeCC-CCCEEEEEecCCeEEEEEccCCceeE--EEeccCCCeEEEEEecC-CCCEEEEEcCCCcEEEEeCC
Q psy14906 160 RWNSCVNVLEPSP-VVDIIGVGLSNKKIILHNILTDESLM--EFIQTWGPVTALSFRTD-GPPMMVSGSNTGHLTVWNLE 235 (583)
Q Consensus 160 ~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 235 (583)
.|...|++|+|+| ++++||+|+.||.|+|||+.+++... .+.+|.+.|++++|+|. +. +|++++.||+|++||++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~-~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN-QFYASSMEGTTRLQDFK 195 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT-EEEEECSSSCEEEEETT
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC-EEEEEeCCCEEEEeecc
Confidence 7788999999999 56799999999999999998776544 45589999999999984 55 99999999999999998
Q ss_pred CCeehhhhh-hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee
Q psy14906 236 DRQVENQIK-KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA 314 (583)
Q Consensus 236 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 314 (583)
++....... ..+...+.+++|+|++++|++|+.||.|++||++ .+.+..+.+|...|.+++|+|....++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-----~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-----GKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-----SCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-----cceeEEEecccceEEeeeecCCCceEEEEec
Confidence 765433220 2234467899999999999999999999999764 3456678899999999999985556888999
Q ss_pred CCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCc
Q psy14906 315 GDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYK 394 (583)
Q Consensus 315 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 394 (583)
.|+.|++||+++.+....+.
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~------------------------------------------------------------ 290 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFL------------------------------------------------------------ 290 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCS------------------------------------------------------------
T ss_pred CcceeeEEecccccccceEE------------------------------------------------------------
Confidence 99999999998765432220
Q ss_pred ccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCC-CCcccCeeEEEEeCCCcE
Q psy14906 395 SKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQ-PGHVGGVRGVVSDNLNQI 473 (583)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~ 473 (583)
....|...|++++|+|+|++|++++.||.|++||+.++.....+..... ......+....|+|++.+
T Consensus 291 ------------~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
T 4e54_B 291 ------------YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL 358 (435)
T ss_dssp ------------BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred ------------EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE
Confidence 0112236799999999999999999999999999998887665521100 011112334566666666
Q ss_pred EEEee------------cCCcEEEEEccCCCCCceEEee--ccCCeeeE-EeccCCcEEEEEeCCceEEEEEccccceE
Q psy14906 474 VISGG------------NDQTVKVWHFKQTGKPPLRSIK--LDNGISFF-RTHQESSMLAVCLDDFTVNIIDIDTCTII 537 (583)
Q Consensus 474 l~s~~------------~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~-~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 537 (583)
+++++ .++.|++||..++ +.+..+. +...|.++ +|+|+|++||+|+ |+.|+|||+++++..
T Consensus 359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g--~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSG--KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEECCCCTTSCCSSTTCCCCEEEECSSSC--CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEEcCCCCeEEEEecCCCEEEEEECCCC--cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 55543 3457999999998 7776653 44578887 6999999999876 779999999988753
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=309.96 Aligned_cols=337 Identities=15% Similarity=0.160 Sum_probs=250.5
Q ss_pred EEecCCcEEEeec-CCCCCCeEEEEeeC----eEEEEEcCCeEEEEeccc----eee-eeec-ccCccEEEE--ccCCCE
Q psy14906 57 VYGCNHFKLLSVS-PQHEDDITCLSSDF----FHIYTSANNIIYAWRRGI----DIV-GTYK-GHTSPVHLI--LPFGPH 123 (583)
Q Consensus 57 v~d~~~~~~~~~~-~~h~~~v~~~~~~~----~~~~~~~~~~i~vw~~~~----~~~-~~~~-~h~~~v~~i--s~~~~~ 123 (583)
.|+ .+++++..+ .+|.+.|+++++++ .+++++.|++|++||... ... ..+. +|..+|.++ +|++++
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDA 125 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSE
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCE
Confidence 488 456777777 89999999999854 577888999999999743 111 1222 699999997 899999
Q ss_pred EEEEeCCCcEEEEEcC---CCcEEEEeeccCCceEEeccc--CCcceEEEe--eCCCCCEEEEEecCCeEEEEEccCCce
Q psy14906 124 LISVDEESNVKVWDIK---AEETYLELSFDNDTFKIMGKR--WNSCVNVLE--PSPVVDIIGVGLSNKKIILHNILTDES 196 (583)
Q Consensus 124 l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~--~s~~~~~l~~~~~d~~i~iw~~~~~~~ 196 (583)
|++++.||.|++||+. +++.......... ..+.-.. +...+.++. +++++++|++++.|+.|++||+++++.
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECI-RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEE-EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEeCCCEEEEEEeccccCCceeecccccee-EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 9999999999999995 5555544331100 0000001 567788887 668999999999999999999999999
Q ss_pred eEEEec--cCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEe----cCCCEEEEEeCCC
Q psy14906 197 LMEFIQ--TWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFL----YNEPLLVTSSPDN 270 (583)
Q Consensus 197 ~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~d~ 270 (583)
+..+.. |...|++++|+|+++ +|++|+.||.|++||+++++++..+...|...|.+++|+ +++.+|++++.|+
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred eEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 999987 889999999999998 999999999999999999999887743788899999665 4678999999999
Q ss_pred eEEEEEccCCCCCceeeEEecc--------------------------CCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEc
Q psy14906 271 TLKLWIFDKADGNGRLLRIREG--------------------------HSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324 (583)
Q Consensus 271 ~i~~w~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 324 (583)
.|++||+. .++.+..+.+ |...|.+++|+ ++.+|++++.|+.|++||+
T Consensus 284 ~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 284 FLTIWNFV----KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp EEEEEETT----TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEET
T ss_pred cEEEEEcC----CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEEC
Confidence 99999775 3444444443 55568888998 5689999999999999999
Q ss_pred cccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeec
Q psy14906 325 KSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVP 404 (583)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 404 (583)
.+++....+.....
T Consensus 358 ~~~~~~~~~~~~~~------------------------------------------------------------------ 371 (437)
T 3gre_A 358 NELSSSKAVISPSR------------------------------------------------------------------ 371 (437)
T ss_dssp TCGGGCEEEECC--------------------------------------------------------------------
T ss_pred CCcccceEEecccc------------------------------------------------------------------
Confidence 98876654421100
Q ss_pred ccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCC--CcEEEEeecCCc
Q psy14906 405 ERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNL--NQIVISGGNDQT 482 (583)
Q Consensus 405 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~ 482 (583)
.........++++..+++.. ++...+...... ..|...|++++|+++ +.+|++++.||.
T Consensus 372 ------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-----~~h~~~I~~i~~~~~~~~~~l~s~~~dG~ 432 (437)
T 3gre_A 372 ------FSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDS-----LYHHDIINSISTCEVDETPLLVACDNSGL 432 (437)
T ss_dssp ------CCCEEEEEEEETTEEEEEEE--------CC------------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred ------cCceEEEEEeecceEEEEEe--------cccccccccCcc-----cccccceeeEeeeccCCceEEEEEcCCce
Confidence 00234445555555554443 222223333333 579999999999998 789999999999
Q ss_pred EEEEE
Q psy14906 483 VKVWH 487 (583)
Q Consensus 483 i~iwd 487 (583)
|+||+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
No 87
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.2e-38 Score=304.94 Aligned_cols=293 Identities=19% Similarity=0.309 Sum_probs=239.3
Q ss_pred ecccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeE
Q psy14906 107 YKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKI 186 (583)
Q Consensus 107 ~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 186 (583)
..+|...|.++++++++|++|+.||.|++||+.+++.+..+. +|...|.+++| ++++|++|+.||.|
T Consensus 129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----------~h~~~v~~l~~--~~~~l~sg~~dg~i 195 (435)
T 1p22_A 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-----------GHTGSVLCLQY--DERVIITGSSDSTV 195 (435)
T ss_dssp CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-----------CCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-----------CCCCcEEEEEE--CCCEEEEEcCCCeE
Confidence 346778899999999999999999999999999999999987 89999999999 78999999999999
Q ss_pred EEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeeh---hhhhhccccceEEEEEecCCCEE
Q psy14906 187 ILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVE---NQIKKAHRKVVTGAHFLYNEPLL 263 (583)
Q Consensus 187 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l 263 (583)
++||+.+++.+..+.+|...|.+++|+++ ++++|+.||.|++||+.+++.. ..+ .+|...|.+++| +++++
T Consensus 196 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l 269 (435)
T 1p22_A 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYI 269 (435)
T ss_dssp EEEESSSCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEE
T ss_pred EEEECCCCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEE
Confidence 99999999999999999999999999743 8999999999999999987655 445 789999999999 78899
Q ss_pred EEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhh
Q psy14906 264 VTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNL 343 (583)
Q Consensus 264 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 343 (583)
++++.|+.|++||+. ..+.+..+.+|...|.++.+. +.++++++.||.|++||+.+++....+.
T Consensus 270 ~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------- 333 (435)
T 1p22_A 270 VSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLE--------- 333 (435)
T ss_dssp EEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEEC---------
T ss_pred EEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEe---------
Confidence 999999999999775 567788889999999999984 6799999999999999998876544331
Q ss_pred hhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC
Q psy14906 344 KRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC 423 (583)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 423 (583)
.+...+.++++ +
T Consensus 334 ------------------------------------------------------------------~h~~~v~~~~~--~ 345 (435)
T 1p22_A 334 ------------------------------------------------------------------GHEELVRCIRF--D 345 (435)
T ss_dssp ------------------------------------------------------------------CCSSCEEEEEC--C
T ss_pred ------------------------------------------------------------------CCcCcEEEEEe--c
Confidence 12256888888 7
Q ss_pred CcEEEEEecCceEEEEEcccCc---------cccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCC
Q psy14906 424 GNFVLIGYSSGHVDRFNIQSGA---------HRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKP 494 (583)
Q Consensus 424 ~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 494 (583)
++++++|+.||.|++||+.++. ....+ .+|.+.|.+++| ++++|++++.||.|++||+.+. .
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~--~ 416 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-----VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND--P 416 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-----CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeec-----cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC--C
Confidence 8999999999999999998766 55555 689999999999 7889999999999999999887 4
Q ss_pred ceEEeeccCCeeeEEec
Q psy14906 495 PLRSIKLDNGISFFRTH 511 (583)
Q Consensus 495 ~~~~~~~~~~v~~~~~s 511 (583)
.........+..++.|.
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 417 AAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp -----------------
T ss_pred CcccCCCCCCccceeee
Confidence 44444444455555554
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-39 Score=311.27 Aligned_cols=296 Identities=13% Similarity=0.117 Sum_probs=227.0
Q ss_pred eecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCC--cEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe
Q psy14906 106 TYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAE--ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL 181 (583)
Q Consensus 106 ~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 181 (583)
.+..|.++|+++ +|++++||+++.|+.|++||+.++ +.+..+. +|...|.+++|+|++++|++++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~~~l~s~s 74 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-----------DHDKIVTCVDWAPKSNRIVTCS 74 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-----------CCSSCEEEEEECTTTCCEEEEE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-----------cCCceEEEEEEeCCCCEEEEEe
Confidence 344567788876 999999999999999999999988 5666665 8999999999999999999999
Q ss_pred cCCeEEEEEccCCc---eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe---ehhhhhhc-cccceEEE
Q psy14906 182 SNKKIILHNILTDE---SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ---VENQIKKA-HRKVVTGA 254 (583)
Q Consensus 182 ~d~~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~-~~~~v~~~ 254 (583)
.|+.|++||+.+++ ....+..|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+ .. |...|.++
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~~ 152 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHL-KRPLRSTILSL 152 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEE-CSSCCSCEEEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEe-ecccCCCeEEE
Confidence 99999999999877 6777888999999999999998 89999999999999999876 35666 45 99999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCC--------------CCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEE
Q psy14906 255 HFLYNEPLLVTSSPDNTLKLWIFDKAD--------------GNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLR 320 (583)
Q Consensus 255 ~~~~~~~~l~s~~~d~~i~~w~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 320 (583)
+|+|++++|++++.|+.|++||++... .....+..+ +|...|.+++|+| ++++|++++.||.|+
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~ 230 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVT 230 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEE
Confidence 999999999999999999999875221 124455556 8999999999998 899999999999999
Q ss_pred EEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccce
Q psy14906 321 IFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDM 400 (583)
Q Consensus 321 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 400 (583)
+||+.+++......
T Consensus 231 iwd~~~~~~~~~~~------------------------------------------------------------------ 244 (377)
T 3dwl_C 231 IAYPSAPEQPPRAL------------------------------------------------------------------ 244 (377)
T ss_dssp -CEECSTTSCEEEC------------------------------------------------------------------
T ss_pred EEECCCCCCcceee------------------------------------------------------------------
Confidence 99998876521100
Q ss_pred eeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCc--cccccC---------------------------
Q psy14906 401 FLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGA--HRGSYG--------------------------- 451 (583)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~--------------------------- 451 (583)
.....+...+.+++|+|++++|++++.++.+ +|+..... ....+.
T Consensus 245 -----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 245 -----ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp -----CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred -----EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 0001122578999999999999999877755 66654211 000000
Q ss_pred ------------------CCCCCCcccCeeEEEEeCCC-c---EEEEeecCCcEEEEEc
Q psy14906 452 ------------------HDNQPGHVGGVRGVVSDNLN-Q---IVISGGNDQTVKVWHF 488 (583)
Q Consensus 452 ------------------~~~~~~h~~~v~~~~~s~~~-~---~l~s~~~dg~i~iwd~ 488 (583)
......|...|+++++.+.. . .|+|++.||.|++||+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00012399999999976643 3 6999999999999985
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=287.30 Aligned_cols=280 Identities=16% Similarity=0.223 Sum_probs=235.6
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCc
Q psy14906 116 LILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDE 195 (583)
Q Consensus 116 ~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~ 195 (583)
+.|+++ .||+| .|++|+|||+.+++++..+... +|...|.+++|+|++++||+|+.||+|++||+++++
T Consensus 32 ~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~---------~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 32 DWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQME---------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp EECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECC---------STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEec---------CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 347765 66665 5999999999999998887654 788899999999999999999999999999999999
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee-hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEE
Q psy14906 196 SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV-ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKL 274 (583)
Q Consensus 196 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~ 274 (583)
.+..+.+|...+.++.+. +. ++++++.++.+++|+...... +..+ .+|...+..+.+.+++++|++++.|+.|++
T Consensus 101 ~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176 (318)
T ss_dssp EEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEE-cCccCceEEEEEcCCCCEEEEEecCcceeE
Confidence 999999998888776654 44 899999999999999987644 4444 789999999999999999999999999999
Q ss_pred EEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEE--EEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhcc
Q psy14906 275 WIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNI--LSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKM 352 (583)
Q Consensus 275 w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (583)
||+...............+...|.++.++|.+...+ ++++.+++|++||...........
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~------------------ 238 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD------------------ 238 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE------------------
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc------------------
Confidence 987654434455666777888999999998555554 356678999999987754432211
Q ss_pred ccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe-
Q psy14906 353 NEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY- 431 (583)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 431 (583)
+...+..+.++|+++.+++++
T Consensus 239 ----------------------------------------------------------~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 239 ----------------------------------------------------------AHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp ----------------------------------------------------------CSSCEEEEEEETTTTEEEEEEC
T ss_pred ----------------------------------------------------------ceeeeeeeeecccccceEEEEE
Confidence 115688999999998887754
Q ss_pred -cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 432 -SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 432 -~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
.|+.|++||+.+++.+..+ .+|.+.|++++|+|++++|++++.||+|+|||+...
T Consensus 261 ~~d~~i~iwd~~~~~~~~~l-----~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKVAEL-----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTCCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7999999999999999998 799999999999999999999999999999999764
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=304.68 Aligned_cols=297 Identities=11% Similarity=0.207 Sum_probs=233.4
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCc-----------eeEEEeccC------------CCeEEEEEecCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDE-----------SLMEFIQTW------------GPVTALSFRTDG 216 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 216 (583)
.+.+.|.+++|+|++++||+|+.||.|++||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 457899999999999999999999999999999877 577888998 889999999998
Q ss_pred --CCEEEEEcCCCcEEEEeCCCCeeh---------------------------------------hhhhhccccceEEEE
Q psy14906 217 --PPMMVSGSNTGHLTVWNLEDRQVE---------------------------------------NQIKKAHRKVVTGAH 255 (583)
Q Consensus 217 --~~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~ 255 (583)
. +|++++.|+.|++||+.+++.. ..+..+|...|.+++
T Consensus 106 ~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 NAA-QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SSS-EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred Ccc-eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 8999999999999999764431 122257999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCCCceeeE-------EeccCCCCCeeEEEeeCCC-CEEEEeeCCCcEEEEEcccc
Q psy14906 256 FLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLR-------IREGHSAPPNYIQFYGNSS-DNILSAAGDSTLRIFNTKSE 327 (583)
Q Consensus 256 ~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 327 (583)
|+|++++|+++ .|+.|++||++. ....+. .+.+|...|.+++|+| ++ .+|++++.||.|++||++++
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEI---TDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTE---EEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCC---CCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCC
Confidence 99999999998 799999997752 122333 2568999999999998 56 89999999999999999876
Q ss_pred ccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccc
Q psy14906 328 TSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERC 407 (583)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 407 (583)
+.....
T Consensus 260 ~~~~~~-------------------------------------------------------------------------- 265 (447)
T 3dw8_B 260 ALCDRH-------------------------------------------------------------------------- 265 (447)
T ss_dssp SSSCTT--------------------------------------------------------------------------
T ss_pred ccccce--------------------------------------------------------------------------
Confidence 531100
Q ss_pred cccCCCCceEEEEccCCcEEEEEecCceEEEEEccc-CccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEE
Q psy14906 408 KQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQS-GAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVW 486 (583)
Q Consensus 408 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 486 (583)
+. .+.... ......+ ..|...|.+++|+|++++|++++. +.|++|
T Consensus 266 -------~~---------------------~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 266 -------SK---------------------LFEEPEDPSNRSFF-----SEIISSISDVKFSHSGRYMMTRDY-LSVKVW 311 (447)
T ss_dssp -------CE---------------------EECCC-----CCHH-----HHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred -------ee---------------------EeccCCCccccccc-----cccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence 00 000000 0000112 457779999999999999999998 999999
Q ss_pred EccC-CCCCceEEeeccCCe----------------eeEEeccCCcEEEEEeCCceEEEEEccccceEEeec--------
Q psy14906 487 HFKQ-TGKPPLRSIKLDNGI----------------SFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS-------- 541 (583)
Q Consensus 487 d~~~-~~~~~~~~~~~~~~v----------------~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------- 541 (583)
|+.. + +++..+..+..+ ..++|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 312 d~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~ 388 (447)
T 3dw8_B 312 DLNMEN--RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKP 388 (447)
T ss_dssp ETTCCS--SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCT
T ss_pred eCCCCc--cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccc
Confidence 9987 5 666666655432 339999999999999999999999999887653 22
Q ss_pred -------------------------ccccceeeEEecCCCcEEEEEeCCCeEEEEeCC
Q psy14906 542 -------------------------GHMGQLTDADFSPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 542 -------------------------~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
.+...|..++|+|++++||+++.++ +++|.-+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2345688999999999999998776 7888643
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-37 Score=294.73 Aligned_cols=245 Identities=11% Similarity=0.051 Sum_probs=175.0
Q ss_pred CCCeEEEEe--eCeEEEEEc--------CCeEEEEeccce-----------eeeeecccCccEEEEccCCCEEEEEe---
Q psy14906 73 EDDITCLSS--DFFHIYTSA--------NNIIYAWRRGID-----------IVGTYKGHTSPVHLILPFGPHLISVD--- 128 (583)
Q Consensus 73 ~~~v~~~~~--~~~~~~~~~--------~~~i~vw~~~~~-----------~~~~~~~h~~~v~~is~~~~~l~s~~--- 128 (583)
..||+|++| |+++++++. ++.|++|++... ....|.+|+..|.+++++++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 468999998 667766653 336999996321 12346789999999999999988874
Q ss_pred --------CCCcEEEEEcCCCcEEEE----eeccCCceEEecccCCcceEEEeeCCCCCEEEEEe--cCCeEEEEEccCC
Q psy14906 129 --------EESNVKVWDIKAEETYLE----LSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL--SNKKIILHNILTD 194 (583)
Q Consensus 129 --------~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~ 194 (583)
.|+.+++|++.++..... ..+... ..+...+.+++|||||++||+++ .|++|+|||++++
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAS------TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCC------CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeec------CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 367799999876532221 111100 14556789999999999987654 6899999999999
Q ss_pred ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehh-hhhhccccceEEEEEecCCCEEEEEeCCC---
Q psy14906 195 ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVEN-QIKKAHRKVVTGAHFLYNEPLLVTSSPDN--- 270 (583)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--- 270 (583)
+.+..+. |...|.+++|+|||+ ++++++.+ .+.+|+..+++.+. ....+|...|.+++|+|+++++++++.|+
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~-~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGK-VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSS-EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred cEEEEeC-CCCceEEEEEccCCc-eEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 9998886 558899999999999 88888855 56677766665443 33357889999999999999999998887
Q ss_pred -eEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEcccc
Q psy14906 271 -TLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSE 327 (583)
Q Consensus 271 -~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 327 (583)
.+++|++............+.+|...|++++|+| ++++|++|+.|++|++||+.++
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTT
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCC
Confidence 5777865432111222344556666666666665 5666666666666666665543
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3e-37 Score=283.72 Aligned_cols=210 Identities=17% Similarity=0.243 Sum_probs=180.1
Q ss_pred eeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCC--CcEEEEeeccCCceEEecccCCcceEEEeeCCC--CCEE
Q psy14906 104 VGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKA--EETYLELSFDNDTFKIMGKRWNSCVNVLEPSPV--VDII 177 (583)
Q Consensus 104 ~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l 177 (583)
+..+.+|.+.|.++ +|+|++||+++.|++|+|||+.+ ++.+.++. +|...|.+++|+++ +++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-----------gH~~~V~~v~~s~~~~g~~l 70 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-----------GHEGPVWRVDWAHPKFGTIL 70 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-----------CCSSCEEEEEECCGGGCSEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-----------cccCCeEEEEecCCCcCCEE
Confidence 34678999999987 89999999999999999999975 35667776 99999999999874 8999
Q ss_pred EEEecCCeEEEEEccCCc--eeEEEeccCCCeEEEEEecC--CCCEEEEEcCCCcEEEEeCCCCee--hhhhhhccccce
Q psy14906 178 GVGLSNKKIILHNILTDE--SLMEFIQTWGPVTALSFRTD--GPPMMVSGSNTGHLTVWNLEDRQV--ENQIKKAHRKVV 251 (583)
Q Consensus 178 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v 251 (583)
++|+.|++|++||+++++ .+..+.+|...|.+++|+|+ +. +|++++.|+.|++||++++.. ...+ .+|...|
T Consensus 71 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~h~~~v 148 (297)
T 2pm7_B 71 ASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGV 148 (297)
T ss_dssp EEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEE-ECCSSCE
T ss_pred EEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeee-ecccCcc
Confidence 999999999999998874 56778889999999999998 66 899999999999999987632 2334 6899999
Q ss_pred EEEEEecC-------------CCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC--CCEEEEeeCC
Q psy14906 252 TGAHFLYN-------------EPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS--SDNILSAAGD 316 (583)
Q Consensus 252 ~~~~~~~~-------------~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d 316 (583)
.+++|+|+ +++|++++.|+.|++||++...........+.+|...|.+++|+|.. +.+|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 99999997 57999999999999998864332233667889999999999999832 4899999999
Q ss_pred CcEEEEEccc
Q psy14906 317 STLRIFNTKS 326 (583)
Q Consensus 317 g~i~iwd~~~ 326 (583)
++|++||+.+
T Consensus 229 ~~v~iWd~~~ 238 (297)
T 2pm7_B 229 RTCIIWTQDN 238 (297)
T ss_dssp SCEEEEEESS
T ss_pred CcEEEEEeCC
Confidence 9999999865
No 93
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.7e-37 Score=292.71 Aligned_cols=313 Identities=14% Similarity=0.188 Sum_probs=232.3
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC----eehhhhhhccccceEEEEEec--CCCEEEEEeCCCe
Q psy14906 198 MEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR----QVENQIKKAHRKVVTGAHFLY--NEPLLVTSSPDNT 271 (583)
Q Consensus 198 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~ 271 (583)
..+.+|.+.|++++|+|+++ +|++++.||.|++||+.++ +....+ .+|...|.+++|+| ++++|++++.|+.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 34678999999999999999 8999999999999999876 455566 68999999999999 6999999999999
Q ss_pred EEEEEccCCCCC-----ceeeEEeccCCCCCeeEEEeeCC--CCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhh
Q psy14906 272 LKLWIFDKADGN-----GRLLRIREGHSAPPNYIQFYGNS--SDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLK 344 (583)
Q Consensus 272 i~~w~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 344 (583)
|++|+++..... .+.+..+..|...|.+++|+| + +.+|++++.||.|++||+.+++....+......
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----- 156 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM----- 156 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE-----
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccc-----
Confidence 999988643211 156788889999999999997 6 899999999999999999887765443211000
Q ss_pred hhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC-
Q psy14906 345 RKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC- 423 (583)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~- 423 (583)
.........+...+.+++|+|+
T Consensus 157 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~p~~ 179 (351)
T 3f3f_A 157 ---------------------------------------------------------KVLSIPPANHLQSDFCLSWCPSR 179 (351)
T ss_dssp ---------------------------------------------------------ESCSCCCSSCSCCCEEEEECCCS
T ss_pred ---------------------------------------------------------cccccccCCcccceeEEEeccCC
Confidence 0000011122367999999997
Q ss_pred --CcEEEEEecCceEEEEEcccCcc--ccccCCCCCCCcccCeeEEEEeCCC----cEEEEeecCCcEEEEEccCCCCCc
Q psy14906 424 --GNFVLIGYSSGHVDRFNIQSGAH--RGSYGHDNQPGHVGGVRGVVSDNLN----QIVISGGNDQTVKVWHFKQTGKPP 495 (583)
Q Consensus 424 --~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~~~dg~i~iwd~~~~~~~~ 495 (583)
+.++++++.++.+.+|+...+.. ...+ .+|...|++++|+|++ ++|++++.||.|++||+... ..
T Consensus 180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~--~~ 252 (351)
T 3f3f_A 180 FSPEKLAVSALEQAIIYQRGKDGKLHVAAKL-----PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--LS 252 (351)
T ss_dssp SSCCEEEEEETTEEEEEEECTTSCEEEEEEC-----CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC--C-
T ss_pred CCCcEEEEecCCCcEEEEccCCCceeeeeec-----CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC--cC
Confidence 89999999999998888877765 4444 6899999999999998 89999999999999999876 33
Q ss_pred eEEe-eccCCeeeEEeccCCcEEEEE----eCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeEEE
Q psy14906 496 LRSI-KLDNGISFFRTHQESSMLAVC----LDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRV 570 (583)
Q Consensus 496 ~~~~-~~~~~v~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~v 570 (583)
.... ...........++....++.+ .....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp --------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEE
Confidence 2222 222233344444444444443 34456777888888899999999999999999999999999999999999
Q ss_pred EeCCCccccccc
Q psy14906 571 WDIPSSQLIDCF 582 (583)
Q Consensus 571 w~~~~~~~~~~~ 582 (583)
|++.+++.++.+
T Consensus 333 w~~~~~~~~~~~ 344 (351)
T 3f3f_A 333 WKATYSNEFKCM 344 (351)
T ss_dssp EEECTTSCEEEE
T ss_pred EecCcCcchhhe
Confidence 999998766544
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=296.47 Aligned_cols=279 Identities=24% Similarity=0.390 Sum_probs=221.0
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 239 (583)
.|...|.++++ ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| +++ +|++|+.||.|++||+.+++.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEESSSCCE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCCCcE
Confidence 56778988887 7999999999999999999999999999999999999999 666 899999999999999999999
Q ss_pred hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcE
Q psy14906 240 ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTL 319 (583)
Q Consensus 240 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 319 (583)
+..+ .+|...|.+++|+ +.++++++.|+.|++||+.... .......+.+|...|.+++| +++++++++.||.|
T Consensus 206 ~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i 278 (435)
T 1p22_A 206 LNTL-IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTI 278 (435)
T ss_dssp EEEE-CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSS-CCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEE
T ss_pred EEEE-cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCC-CceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeE
Confidence 9888 7899999999996 4589999999999999775432 22333667788888888887 46688888888888
Q ss_pred EEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccc
Q psy14906 320 RIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDD 399 (583)
Q Consensus 320 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (583)
++||+.+++..
T Consensus 279 ~vwd~~~~~~~--------------------------------------------------------------------- 289 (435)
T 1p22_A 279 KVWNTSTCEFV--------------------------------------------------------------------- 289 (435)
T ss_dssp EEEETTTCCEE---------------------------------------------------------------------
T ss_pred EEEECCcCcEE---------------------------------------------------------------------
Confidence 88887654321
Q ss_pred eeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec
Q psy14906 400 MFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN 479 (583)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 479 (583)
..+ .+|...|.++++ +++++++++.
T Consensus 290 ------------------------------------------------~~~-----~~~~~~v~~~~~--~~~~l~~g~~ 314 (435)
T 1p22_A 290 ------------------------------------------------RTL-----NGHKRGIACLQY--RDRLVVSGSS 314 (435)
T ss_dssp ------------------------------------------------EEE-----ECCSSCEEEEEE--ETTEEEEEET
T ss_pred ------------------------------------------------EEE-----cCCCCcEEEEEe--CCCEEEEEeC
Confidence 122 356666777777 3567777777
Q ss_pred CCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccc---------eEEeecccccceee
Q psy14906 480 DQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCT---------IIRKLSGHMGQLTD 549 (583)
Q Consensus 480 dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~h~~~v~~ 549 (583)
||.|++||+.++ +++..+. +...+.+++| ++++|++|+.||.|++||+.+++ .+..+.+|.+.|.+
T Consensus 315 dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 390 (435)
T 1p22_A 315 DNTIRLWDIECG--ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390 (435)
T ss_dssp TSCEEEEETTTC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred CCeEEEEECCCC--CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence 788888887776 6666665 3456777777 67778888888888888877665 77888999999999
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCccccc
Q psy14906 550 ADFSPDSRWLITASMDCTIRVWDIPSSQLID 580 (583)
Q Consensus 550 l~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~ 580 (583)
++| ++++|++++.||+|++||+.++....
T Consensus 391 l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 391 LQF--DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp EEE--CSSCEEECCSSSEEEEEC--------
T ss_pred EEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 999 78899999999999999998876543
No 95
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-36 Score=279.66 Aligned_cols=253 Identities=16% Similarity=0.175 Sum_probs=206.8
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC--eehhhhhhccccceEEEEEecC--CCEEEEEeCCCeEE
Q psy14906 198 MEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR--QVENQIKKAHRKVVTGAHFLYN--EPLLVTSSPDNTLK 273 (583)
Q Consensus 198 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~ 273 (583)
..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+..+ +++..+ .+|.+.|.+++|+++ +++|++++.|++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 45678999999999999999 8999999999999999743 567777 799999999999863 89999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCCCeeEEEeeC-CCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhcc
Q psy14906 274 LWIFDKADGNGRLLRIREGHSAPPNYIQFYGN-SSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKM 352 (583)
Q Consensus 274 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (583)
+||++. +....+..+.+|...|.+++|+|. ++.+|++++.|+.|++||++++......
T Consensus 81 iWd~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~------------------- 139 (297)
T 2pm7_B 81 IWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI------------------- 139 (297)
T ss_dssp EEEBSS--SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-------------------
T ss_pred EEEcCC--CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-------------------
Confidence 997653 233456677889999999999983 2789999999999999998764311000
Q ss_pred ccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC---------
Q psy14906 353 NEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC--------- 423 (583)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------- 423 (583)
....|...+.+++|+|+
T Consensus 140 ------------------------------------------------------~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 140 ------------------------------------------------------IIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp ------------------------------------------------------EEECCSSCEEEEEECCCC--------
T ss_pred ------------------------------------------------------eeecccCccceEeecCCcccccccCC
Confidence 00112256788888886
Q ss_pred ----CcEEEEEecCceEEEEEcccCc----cccccCCCCCCCcccCeeEEEEeCCC---cEEEEeecCCcEEEEEccCCC
Q psy14906 424 ----GNFVLIGYSSGHVDRFNIQSGA----HRGSYGHDNQPGHVGGVRGVVSDNLN---QIVISGGNDQTVKVWHFKQTG 492 (583)
Q Consensus 424 ----~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~ 492 (583)
+++|++|+.|+.|++||+.++. ....+ .+|...|.+++|+|++ ++|++++.|++|++||+....
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-----~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-----EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-----cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 5799999999999999998776 44455 7899999999999984 899999999999999998752
Q ss_pred CCce-EEe---eccCCeeeEEeccCCcEEEEEeCCceEEEEEcc
Q psy14906 493 KPPL-RSI---KLDNGISFFRTHQESSMLAVCLDDFTVNIIDID 532 (583)
Q Consensus 493 ~~~~-~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 532 (583)
.... ..+ .+...+.+++|+|+|++||+++.|+.|++|+..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1222 222 345689999999999999999999999999976
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-36 Score=285.99 Aligned_cols=281 Identities=13% Similarity=0.119 Sum_probs=234.5
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe---ehhhhhhccccceEEEEEecCCC-EEEEEeCCCeEEEE
Q psy14906 200 FIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ---VENQIKKAHRKVVTGAHFLYNEP-LLVTSSPDNTLKLW 275 (583)
Q Consensus 200 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~w 275 (583)
..+|.+.|++++|+|+++ +|++++.|+.|++||+.+++ ....+ .+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 7 ~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp SSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 347889999999999998 89999999999999998776 23344 58999999999999999 99999999999999
Q ss_pred Ec-cCCCCCceeeEEecc--CCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccc---------cccceeeccchhhhhhh
Q psy14906 276 IF-DKADGNGRLLRIREG--HSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS---------ETSNKNLGIASANRNNL 343 (583)
Q Consensus 276 ~~-~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~ 343 (583)
++ +. . ....+.+ |...|.+++|+| +.++++++.|+.|++||+.+ ++....+.
T Consensus 85 d~~~~----~-~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--------- 148 (342)
T 1yfq_A 85 DLIGS----P-SFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--------- 148 (342)
T ss_dssp CSSSS----S-SEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---------
T ss_pred EeccC----C-ceEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---------
Confidence 66 42 2 2367778 999999999996 88999999999999999876 32221110
Q ss_pred hhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC
Q psy14906 344 KRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC 423 (583)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 423 (583)
+...+.+++|+|+
T Consensus 149 -------------------------------------------------------------------~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 149 -------------------------------------------------------------------VKNKIFTMDTNSS 161 (342)
T ss_dssp -------------------------------------------------------------------SCCCEEEEEECSS
T ss_pred -------------------------------------------------------------------eCCceEEEEecCC
Confidence 2267899999998
Q ss_pred CcEEEEEecCceEEEEEccc-CccccccCCCCCCCcccCeeEEEEeC-CCcEEEEeecCCcEEEEEccCCC----CCceE
Q psy14906 424 GNFVLIGYSSGHVDRFNIQS-GAHRGSYGHDNQPGHVGGVRGVVSDN-LNQIVISGGNDQTVKVWHFKQTG----KPPLR 497 (583)
Q Consensus 424 ~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~----~~~~~ 497 (583)
+ +++++.++.|++||+.+ +........ ..|...+.+++|+| +++++++++.||.|++|+++... .+...
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 8 99999999999999988 543221111 47888999999999 99999999999999999997751 13444
Q ss_pred Eeecc----------CCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeeccc-ccceeeEEecCCCcEEEEEeCCC
Q psy14906 498 SIKLD----------NGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGH-MGQLTDADFSPDSRWLITASMDC 566 (583)
Q Consensus 498 ~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~~d~ 566 (583)
.+..+ ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |++++|++++.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 44433 28999999999999999999999999999999999999998 99999999 9999999999999
Q ss_pred e-EEEEe
Q psy14906 567 T-IRVWD 572 (583)
Q Consensus 567 ~-i~vw~ 572 (583)
. .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 44443
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.9e-36 Score=286.85 Aligned_cols=299 Identities=16% Similarity=0.157 Sum_probs=229.0
Q ss_pred eeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCC----cEEEEeeccCCceEEecccCCcceEEEeeCC--CCC
Q psy14906 104 VGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAE----ETYLELSFDNDTFKIMGKRWNSCVNVLEPSP--VVD 175 (583)
Q Consensus 104 ~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~ 175 (583)
...+.+|.+.|+++ +|++++||+++.||.|++||+.++ +....+. +|...|.+++|+| +++
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-----------AHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-----------CCSSCEEEEEECCGGGCS
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-----------cCCCcEEEEEEcCCCCCC
Confidence 35678999999998 899999999999999999999976 3555565 8999999999999 699
Q ss_pred EEEEEecCCeEEEEEccCC---------ceeEEEeccCCCeEEEEEecC--CCCEEEEEcCCCcEEEEeCCCCeehhhhh
Q psy14906 176 IIGVGLSNKKIILHNILTD---------ESLMEFIQTWGPVTALSFRTD--GPPMMVSGSNTGHLTVWNLEDRQVENQIK 244 (583)
Q Consensus 176 ~l~~~~~d~~i~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 244 (583)
+|++++.||.|++||+.++ +.+..+..|...|.+++|+|+ +. ++++++.||.|++||+.+++.+..+.
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccc
Confidence 9999999999999999887 557788899999999999999 88 89999999999999999887666542
Q ss_pred ------------hccccceEEEEEecC---CCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCC--
Q psy14906 245 ------------KAHRKVVTGAHFLYN---EPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSS-- 307 (583)
Q Consensus 245 ------------~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 307 (583)
..|...+.+++|+|+ +.++++++.++.+.+|+. .......+..+.+|...|.+++|+| ++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~ 228 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG--KDGKLHVAAKLPGHKSLIRSISWAP-SIGR 228 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC--TTSCEEEEEECCCCCSCEEEEEECC-CSSC
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc--CCCceeeeeecCCCCcceeEEEECC-CCCC
Confidence 267889999999997 899999999999977744 3334456788889999999999998 55
Q ss_pred --CEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCc
Q psy14906 308 --DNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKN 385 (583)
Q Consensus 308 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (583)
++|++++.||.|++||+..+..........
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------------------ 260 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESL------------------------------------------------ 260 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC---------------------------------------------------------
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcc------------------------------------------------
Confidence 799999999999999998764322110000
Q ss_pred eEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEE----EEEecCceEEEEEcccCccccccCCCCCCCcccC
Q psy14906 386 KVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFV----LIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGG 461 (583)
Q Consensus 386 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l----~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~ 461 (583)
........++....+ ..+.....+.+|+....+.+..+ .+|...
T Consensus 261 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~ 308 (351)
T 3f3f_A 261 ---------------------------TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-----DDHNGE 308 (351)
T ss_dssp ---------------------------------------------------------CCSEEEEEEEEE-----CTTSSC
T ss_pred ---------------------------cceeccCCCcccccccccccccccceeeeecccccccEEEEE-----eccccc
Confidence 011111111222222 22233445666666667777777 789999
Q ss_pred eeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEe
Q psy14906 462 VRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSI 499 (583)
Q Consensus 462 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 499 (583)
|++++|+|++++|++++.||.|++|++.++ .....+
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~ 344 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYS--NEFKCM 344 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECTT--SCEEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEecCcC--cchhhe
Confidence 999999999999999999999999999987 544433
No 98
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-38 Score=300.98 Aligned_cols=263 Identities=11% Similarity=0.065 Sum_probs=204.0
Q ss_pred CcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEeeCeEEEEEcCCeEEEEeccceeeeeeccc
Q psy14906 31 HLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSDFFHIYTSANNIIYAWRRGIDIVGTYKGH 110 (583)
Q Consensus 31 ~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~h 110 (583)
.-...++|+|||+. +++++.|++|+ |.+.+ ..+.+|...|.+++|.|.- .++.+.+|+.++.....+ .|
T Consensus 16 ~~v~sv~~SpDG~~-iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg----~~~~~~~~~~~~~~~~~~-~~ 84 (588)
T 2j04_A 16 DWKNNLTWARDGTL-YLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE----FENKLDFELAQQNGLLNS-QP 84 (588)
T ss_dssp SSSCCEEECTTSCE-EEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC----CCCTTTTSCCCSSCSSTT-SC
T ss_pred ccEEEEEECCCCCE-EEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC----CcceEEEEeCCCceEeec-CC
Confidence 34578999998766 34455899999 75555 4457999999999985422 566666666554443333 55
Q ss_pred CccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEE
Q psy14906 111 TSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIIL 188 (583)
Q Consensus 111 ~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 188 (583)
...|.++ ||+|++||+++.||.|++||.++ ++..+. +... -....+.+++|||||++||+|+.||+|++
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~------~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGN------LSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSC------STTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCc------cccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 8889987 99999999999999999999554 444442 1000 01236999999999999999999999999
Q ss_pred EEccCCce-------eEEE----eccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeeh---hhhhhccccceEEE
Q psy14906 189 HNILTDES-------LMEF----IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVE---NQIKKAHRKVVTGA 254 (583)
Q Consensus 189 w~~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~ 254 (583)
||+.+++. +.++ .+|...|.+++|+||| +++++.|++|++||+.+++.. .++..+|...|.++
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv 232 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL 232 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence 99998753 5666 5677899999999998 678888999999999887742 34424788999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEE--eeCCCCEEEEeeCCCcEEEEEcc
Q psy14906 255 HFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQF--YGNSSDNILSAAGDSTLRIFNTK 325 (583)
Q Consensus 255 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~ 325 (583)
+|+ ++.||+++ ++.|++|++. ..+......+|...+..++| +| ++..+++++.||+ ++|...
T Consensus 233 aFs--g~~LASa~-~~tIkLWd~~----~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 233 KIV--DYKVVLTC-PGYVHKIDLK----NYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEE--TTEEEEEC-SSEEEEEETT----TTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred EEE--CCEEEEEe-CCeEEEEECC----CCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence 999 68899887 6999999764 33442333389999999999 87 8899999999999 999864
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=290.55 Aligned_cols=296 Identities=15% Similarity=0.154 Sum_probs=236.9
Q ss_pred EEccCCceeEEEeccCCCeEEEEEecC---CCCEEEEEcCCCcEEEEeCCC-Ceeh-hhhhhccccceEEEEEecCCCEE
Q psy14906 189 HNILTDESLMEFIQTWGPVTALSFRTD---GPPMMVSGSNTGHLTVWNLED-RQVE-NQIKKAHRKVVTGAHFLYNEPLL 263 (583)
Q Consensus 189 w~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l 263 (583)
++....+.+..+.+|.+.|++++|+|+ |+ +|++|+.||.|++||+.+ ++.+ ..+ .+|...|.+++|+|++++|
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTTSSEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcCCCEE
Confidence 345566777888899999999999999 47 899999999999999997 5554 555 7899999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEE--eeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhh
Q psy14906 264 VTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQF--YGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRN 341 (583)
Q Consensus 264 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 341 (583)
++++.|+.|++|+++ ..+.. ....|...|.+++| +| ++.+|++++.||.|++||+++++....+...
T Consensus 102 ~s~~~dg~v~iwd~~----~~~~~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----- 170 (368)
T 3mmy_A 102 FTASCDKTAKMWDLS----SNQAI-QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP----- 170 (368)
T ss_dssp EEEETTSEEEEEETT----TTEEE-EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECS-----
T ss_pred EEEcCCCcEEEEEcC----CCCce-eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecC-----
Confidence 999999999999775 33433 35679999999999 65 7889999999999999999887665443111
Q ss_pred hhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEc
Q psy14906 342 NLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYIT 421 (583)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 421 (583)
..+.++.+
T Consensus 171 -----------------------------------------------------------------------~~~~~~~~- 178 (368)
T 3mmy_A 171 -----------------------------------------------------------------------ERCYCADV- 178 (368)
T ss_dssp -----------------------------------------------------------------------SCEEEEEE-
T ss_pred -----------------------------------------------------------------------CCceEEEe-
Confidence 22333333
Q ss_pred cCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcE----EEEeecCCcEEEEEccCCCC-Cce
Q psy14906 422 HCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQI----VISGGNDQTVKVWHFKQTGK-PPL 496 (583)
Q Consensus 422 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~~dg~i~iwd~~~~~~-~~~ 496 (583)
....+++++.++.+.+|++........... ..+...+.++.+.++... +++++.||.|++|++..... ...
T Consensus 179 -~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 179 -IYPMAVVATAERGLIVYQLENQPSEFRRIE---SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp -ETTEEEEEEGGGCEEEEECSSSCEEEEECC---CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred -cCCeeEEEeCCCcEEEEEeccccchhhhcc---ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 355888899999999999987654433321 244555666766665544 99999999999999987621 223
Q ss_pred EEeeccC-------------CeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEe
Q psy14906 497 RSIKLDN-------------GISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 497 ~~~~~~~-------------~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~ 563 (583)
..+..+. .|.+++|+|++++|++++.||.|++||+.+++++..+.+|...|++++|+||+++|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence 3444332 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeC
Q psy14906 564 MDCTIRVWDI 573 (583)
Q Consensus 564 ~d~~i~vw~~ 573 (583)
.|+..+.|++
T Consensus 335 ~d~~~~~~~~ 344 (368)
T 3mmy_A 335 SYDWSKGHEF 344 (368)
T ss_dssp CCCSTTCGGG
T ss_pred cccccccccc
Confidence 9875555444
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=294.78 Aligned_cols=304 Identities=13% Similarity=0.131 Sum_probs=229.4
Q ss_pred ccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCc-----------EEEEeeccCCceEEecccCC------------c
Q psy14906 109 GHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEE-----------TYLELSFDNDTFKIMGKRWN------------S 163 (583)
Q Consensus 109 ~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~------------~ 163 (583)
.|.+.|+++ +|+|++||+|+.||.|+|||+.+++ ....+. +|. .
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----------~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-----------SHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-----------CCCCEEEGGGTEEECC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-----------cccccccccccccccC
Confidence 467899987 9999999999999999999999877 456665 787 8
Q ss_pred ceEEEeeCCCC--CEEEEEecCCeEEEEEccCCcee---------------------------------------EE-Ee
Q psy14906 164 CVNVLEPSPVV--DIIGVGLSNKKIILHNILTDESL---------------------------------------ME-FI 201 (583)
Q Consensus 164 ~i~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~---------------------------------------~~-~~ 201 (583)
.|.+++|+|++ .+|++++.|+.|++||+.+++.. .. ..
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999998 89999999999999999865432 12 35
Q ss_pred ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC-Ceehh-------hhhhccccceEEEEEecCC-CEEEEEeCCCeE
Q psy14906 202 QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLED-RQVEN-------QIKKAHRKVVTGAHFLYNE-PLLVTSSPDNTL 272 (583)
Q Consensus 202 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i 272 (583)
+|...|.+++|+|+++ +|++| .|+.|++||+++ ++... .+ .+|...|.+++|+|++ ++|++++.|+.|
T Consensus 175 ~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 175 AHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANM-EELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSG-GGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccc-cccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 7889999999999998 88888 799999999984 44333 34 6899999999999998 999999999999
Q ss_pred EEEEccCCCCCceeeEEeccCCC------------CCeeEEEeeCCCCEEEEeeCCCcEEEEEccc-cccceeeccchhh
Q psy14906 273 KLWIFDKADGNGRLLRIREGHSA------------PPNYIQFYGNSSDNILSAAGDSTLRIFNTKS-ETSNKNLGIASAN 339 (583)
Q Consensus 273 ~~w~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~ 339 (583)
++||+............+.+|.. .|.+++|+| ++++|++++. +.|++||+.. ++....+......
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccc
Confidence 99987643211122567777775 899999998 8999999999 9999999986 5554443211100
Q ss_pred hhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEE
Q psy14906 340 RNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVY 419 (583)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 419 (583)
..... .......-..+..++
T Consensus 330 ~~~l~------------------------------------------------------------~~~~~~~i~~~~~~~ 349 (447)
T 3dw8_B 330 RSKLC------------------------------------------------------------SLYENDCIFDKFECC 349 (447)
T ss_dssp TTTHH------------------------------------------------------------HHHHTSGGGCCCCEE
T ss_pred ccccc------------------------------------------------------------ccccccccccceEEE
Confidence 00000 000000001244599
Q ss_pred EccCCcEEEEEecCceEEEEEcccCccccccCCC---------------------------CCCCcccCeeEEEEeCCCc
Q psy14906 420 ITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHD---------------------------NQPGHVGGVRGVVSDNLNQ 472 (583)
Q Consensus 420 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------------------~~~~h~~~v~~~~~s~~~~ 472 (583)
|+|++++|++|+.||.|++||+.+++........ ....+...|..++|+|+++
T Consensus 350 ~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 429 (447)
T 3dw8_B 350 WNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN 429 (447)
T ss_dssp ECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS
T ss_pred ECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCC
Confidence 9999999999999999999999988764311000 0013456799999999999
Q ss_pred EEEEeecCCcEEEEEcc
Q psy14906 473 IVISGGNDQTVKVWHFK 489 (583)
Q Consensus 473 ~l~s~~~dg~i~iwd~~ 489 (583)
+||+++.++ +++|..+
T Consensus 430 ~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 430 IIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEEEECSSC-EEEEECC
T ss_pred EEEEEecce-eeeeccc
Confidence 999998875 8888643
No 101
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=7.3e-35 Score=313.74 Aligned_cols=433 Identities=10% Similarity=-0.004 Sum_probs=324.0
Q ss_pred eeeeecCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eCeEEE-EEcC----C--eEE
Q psy14906 25 LGYVSNHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DFFHIY-TSAN----N--IIY 95 (583)
Q Consensus 25 ~g~~~~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~~~~~-~~~~----~--~i~ 95 (583)
-|.+........+|+| + .|++...+.|.+||+.+++.. .+.+|...+.+++| ||+.|+ ++.+ + .|+
T Consensus 9 ~g~~~~~~~~~~~~S~--~--~iaf~~~~~l~~~~~~gg~~~-~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 9 HGLCMPNLLLNPDIHG--D--RIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp ----CCCCCEEEEEET--T--EEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEE
T ss_pred ccccccceEeCcEEeC--C--EEEEEECCcEEEEECCCCcEE-EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEE
Confidence 3434455667778874 2 356666689999999887654 45679999999988 676554 4332 3 899
Q ss_pred EEeccceeeeeecccCccE-------EEE--ccCCCEEEEEeCC------CcEEEEEcCCCcEEEEeeccCCceEEeccc
Q psy14906 96 AWRRGIDIVGTYKGHTSPV-------HLI--LPFGPHLISVDEE------SNVKVWDIKAEETYLELSFDNDTFKIMGKR 160 (583)
Q Consensus 96 vw~~~~~~~~~~~~h~~~v-------~~i--s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 160 (583)
+|+..+...+.+..|...+ ..+ +|||+.+++++.+ ..|.+|++.+++.. .+. .
T Consensus 84 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-~l~-----------~ 151 (1045)
T 1k32_A 84 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLN-----------L 151 (1045)
T ss_dssp EEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECC-----------S
T ss_pred EEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE-Eec-----------C
Confidence 9998766678899999888 554 9999977777644 35888888877643 332 2
Q ss_pred CCcceEEEeeCCCCCEEEEEec------------CCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCc
Q psy14906 161 WNSCVNVLEPSPVVDIIGVGLS------------NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGH 228 (583)
Q Consensus 161 ~~~~i~~~~~s~~~~~l~~~~~------------d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 228 (583)
+ ....++|+| | ++++++. +....+|....+.....+.+|...+.++.|+++ . ++++++.++.
T Consensus 152 ~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~-l~~~~~~dg~ 225 (1045)
T 1k32_A 152 G--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R-IYFITDIDGF 225 (1045)
T ss_dssp C--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E-EEEEECTTSS
T ss_pred C--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E-EEEEEeccCc
Confidence 2 234577999 8 8888752 234566654444555667899999999999998 4 7888888999
Q ss_pred EEEEeCCC-CeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEecc-----------CCCC
Q psy14906 229 LTVWNLED-RQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREG-----------HSAP 296 (583)
Q Consensus 229 i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-----------~~~~ 296 (583)
+.+|.+.. +.....+ ..|. .+...+|+|||+.|+.+. ++.|.+|++. ...+..+.+ |...
T Consensus 226 ~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~-----~~~l~~l~~~~~~~~~~~~~~~~~ 297 (1045)
T 1k32_A 226 GQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPD-----TEKIEKIEIGDLESPEDRIISIPS 297 (1045)
T ss_dssp CEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTT-----TCCEEECCCCCCCBCCSEEEECGG
T ss_pred eEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCC-----ceEeeeeccCcccccccccccccc
Confidence 99998653 3344444 3444 456779999999998884 8999999652 222334444 3446
Q ss_pred CeeEEEe-eCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccc
Q psy14906 297 PNYIQFY-GNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWN 375 (583)
Q Consensus 297 v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (583)
+.+++|+ | ++++|++++ ++.+.+|++..+......
T Consensus 298 v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~------------------------------------------ 333 (1045)
T 1k32_A 298 KFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVP------------------------------------------ 333 (1045)
T ss_dssp GGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECS------------------------------------------
T ss_pred cceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEcc------------------------------------------
Confidence 8999999 8 898888887 789999998765422110
Q ss_pred cEEEEecCCceEEEeecCcccccceeeecccccccCCC-CceEEEEccCCcEEEEEecCceEE-EEEcccCccccccCCC
Q psy14906 376 NIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQS-KPTCVYITHCGNFVLIGYSSGHVD-RFNIQSGAHRGSYGHD 453 (583)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~ 453 (583)
.+.. .+..++|+ ||+.+++++.++.+. +|++.+++.. .+
T Consensus 334 ----------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l--- 374 (1045)
T 1k32_A 334 ----------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KF--- 374 (1045)
T ss_dssp ----------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-EC---
T ss_pred ----------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Ee---
Confidence 0012 57789999 999999988888899 9999876543 33
Q ss_pred CCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEe-eccCCeeeEEeccCCcEEEEEeCC---------
Q psy14906 454 NQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSI-KLDNGISFFRTHQESSMLAVCLDD--------- 523 (583)
Q Consensus 454 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d--------- 523 (583)
..|...+..++|+|||++|++++.++.|++||+.++ +..... .+...+..++|||||++|++++.+
T Consensus 375 --~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg--~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~ 450 (1045)
T 1k32_A 375 --EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 450 (1045)
T ss_dssp --CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred --cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC--ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCC
Confidence 467788999999999999999999999999999988 666666 455678999999999999888764
Q ss_pred -ceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCc
Q psy14906 524 -FTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 524 -g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~ 576 (583)
+.|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+....
T Consensus 451 ~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 451 MQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred CCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 499999999887 6677788888999999999999999999888888876543
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=291.72 Aligned_cols=261 Identities=16% Similarity=0.200 Sum_probs=219.1
Q ss_pred eeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcC--CCcEEEEeeccCCceEEecccCCcceEEEeeCCC--CC
Q psy14906 102 DIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIK--AEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPV--VD 175 (583)
Q Consensus 102 ~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~ 175 (583)
+.+..+.+|.+.|+++ +|++++||+++.||.|++||+. +++.+..+. +|...|.+++|+++ ++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----------GHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----------CCSSCEEEEEECCGGGCS
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-----------CCCCcEEEEEeCCCCCCC
Confidence 4677899999999997 8999999999999999999998 456666666 89999999999987 99
Q ss_pred EEEEEecCCeEEEEEccCCc--eeEEEeccCCCeEEEEEecC--CCCEEEEEcCCCcEEEEeCCCCee--hhhhhhcccc
Q psy14906 176 IIGVGLSNKKIILHNILTDE--SLMEFIQTWGPVTALSFRTD--GPPMMVSGSNTGHLTVWNLEDRQV--ENQIKKAHRK 249 (583)
Q Consensus 176 ~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~ 249 (583)
+|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ +. +|++++.|+.|++||+.++.. ...+ .+|..
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~ 148 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIII-DAHAI 148 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEE-ECCTT
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEe-cCCCC
Confidence 99999999999999999987 77778889999999999999 77 899999999999999988743 2334 57899
Q ss_pred ceEEEEEec-------------CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC---CCEEEEe
Q psy14906 250 VVTGAHFLY-------------NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS---SDNILSA 313 (583)
Q Consensus 250 ~v~~~~~~~-------------~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~ 313 (583)
.|.+++|+| ++.+|++++.|+.|++||+............+.+|...|.+++|+| + +.+|+++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~ 227 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASV 227 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCCCeEEEE
Confidence 999999999 6999999999999999988755434456678889999999999998 6 8999999
Q ss_pred eCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecC
Q psy14906 314 AGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFY 393 (583)
Q Consensus 314 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 393 (583)
+.||.|++||+.++....... +
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~~------------------------------------------------------~---- 249 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKKT------------------------------------------------------L---- 249 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEEE------------------------------------------------------E----
T ss_pred eCCCEEEEEeCCCCCccceee------------------------------------------------------e----
Confidence 999999999998754211100 0
Q ss_pred cccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcc
Q psy14906 394 KSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAH 446 (583)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 446 (583)
.....+...+.+++|+|++++|++++.||.|++|++..+..
T Consensus 250 ------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 250 ------------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp ------------SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred ------------eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 00011226799999999999999999999999999986543
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-36 Score=282.48 Aligned_cols=253 Identities=16% Similarity=0.181 Sum_probs=202.7
Q ss_pred eeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCc--EEEEeeccCCceEEecccCCcceEEEeeCC--CCCEEE
Q psy14906 105 GTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEE--TYLELSFDNDTFKIMGKRWNSCVNVLEPSP--VVDIIG 178 (583)
Q Consensus 105 ~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~ 178 (583)
..+.+|.+.|+++ +|+|++||+++.|++|+|||+.+++ .+..+. +|...|.+++|++ ++++|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-----------gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-----------GHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-----------CCSSCEEEEEECCGGGSSCEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-----------CCCccEEEEEeCCCCCCCEEE
Confidence 3567999999987 8999999999999999999999875 345665 9999999999986 489999
Q ss_pred EEecCCeEEEEEccCC--ceeEEEeccCCCeEEEEEecC--CCCEEEEEcCCCcEEEEeCCCCe---ehhhhhhccccce
Q psy14906 179 VGLSNKKIILHNILTD--ESLMEFIQTWGPVTALSFRTD--GPPMMVSGSNTGHLTVWNLEDRQ---VENQIKKAHRKVV 251 (583)
Q Consensus 179 ~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v 251 (583)
+|+.|++|++||++++ +.+..+.+|...|.+++|+|+ +. +|++|+.|+.|++||+..+. ....+ .+|...|
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~-~~h~~~v 153 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKIN-NAHTIGC 153 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBT-TSSSSCB
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeee-ccccCCc
Confidence 9999999999999887 456678899999999999998 66 89999999999999998753 23444 6899999
Q ss_pred EEEEEecC-----------------CCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC---CCEEE
Q psy14906 252 TGAHFLYN-----------------EPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS---SDNIL 311 (583)
Q Consensus 252 ~~~~~~~~-----------------~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~ 311 (583)
.+++|+|+ +++|++++.|+.|++|+++.. .....+..+.+|...|.+++|+|.. +.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 99999997 478999999999999987421 1235677889999999999999832 37899
Q ss_pred EeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEee
Q psy14906 312 SAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWS 391 (583)
Q Consensus 312 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 391 (583)
+++.|++|++|++.+.......
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~---------------------------------------------------------- 254 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWS---------------------------------------------------------- 254 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCB----------------------------------------------------------
T ss_pred EEcCCCeEEEEEccCccccchh----------------------------------------------------------
Confidence 9999999999998753110000
Q ss_pred cCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcc
Q psy14906 392 FYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQ 442 (583)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 442 (583)
......+...+.+++|+|++++|++++.||.|++|+..
T Consensus 255 -------------~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 255 -------------PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp -------------CCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred -------------hhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 00000112579999999999999999999999999975
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-36 Score=286.12 Aligned_cols=257 Identities=14% Similarity=0.147 Sum_probs=215.9
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEcc--CCceeEEEeccCCCeEEEEEecC--CCCEEEEEcCCCcEEEEeCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNIL--TDESLMEFIQTWGPVTALSFRTD--GPPMMVSGSNTGHLTVWNLE 235 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~ 235 (583)
+|...|.+++|+|++++||+|+.||.|++||+. +++.+..+.+|...|++++|+++ ++ +|++++.||.|++||+.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~ 87 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEE 87 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCEEEEEEcC
Confidence 899999999999999999999999999999998 66778889999999999999977 77 99999999999999999
Q ss_pred CCe--ehhhhhhccccceEEEEEecC--CCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeC------
Q psy14906 236 DRQ--VENQIKKAHRKVVTGAHFLYN--EPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN------ 305 (583)
Q Consensus 236 ~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 305 (583)
+++ .+..+ ..|...|.+++|+|+ +++|++++.|+.|++|++... .......+..|...|.+++|+|.
T Consensus 88 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 88 NGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp TTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT--SCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred CCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC--CceeeEEecCCCCceEEEEEcCccccccc
Confidence 886 56666 679999999999999 999999999999999977543 33445567789999999999984
Q ss_pred ------CCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEE
Q psy14906 306 ------SSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAA 379 (583)
Q Consensus 306 ------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (583)
++.++++++.||.|++||++++.....+.
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------------------------- 199 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--------------------------------------------- 199 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEE---------------------------------------------
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE---------------------------------------------
Confidence 58999999999999999998654321110
Q ss_pred EecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC---CcEEEEEecCceEEEEEcccCccccccCCCCCC
Q psy14906 380 IHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC---GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQP 456 (583)
Q Consensus 380 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 456 (583)
.....|...+.+++|+|+ ++++++++.||.|++||+.++............
T Consensus 200 --------------------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 253 (379)
T 3jrp_A 200 --------------------------STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE 253 (379)
T ss_dssp --------------------------EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS
T ss_pred --------------------------EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccc
Confidence 001122367999999999 899999999999999999987522211111114
Q ss_pred CcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 457 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
.|...|.+++|+|++++|++++.||.|++|++...
T Consensus 254 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 254 KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred cCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 68999999999999999999999999999999865
No 105
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-36 Score=281.54 Aligned_cols=253 Identities=12% Similarity=0.125 Sum_probs=197.6
Q ss_pred EEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe--ehhhhhhccccceEEEEEec--CCCEEEEEeCCCeEEE
Q psy14906 199 EFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ--VENQIKKAHRKVVTGAHFLY--NEPLLVTSSPDNTLKL 274 (583)
Q Consensus 199 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~ 274 (583)
.+.+|.+.|++++|+|+++ +|++|+.|++|++||+.+++ ++..+ .+|.+.|.+++|++ ++++|++++.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 3568999999999999999 99999999999999998764 45666 79999999999986 4899999999999999
Q ss_pred EEccCCCCCceeeEEeccCCCCCeeEEEeeCC-CCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccc
Q psy14906 275 WIFDKADGNGRLLRIREGHSAPPNYIQFYGNS-SDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 275 w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
||+. .+.......+.+|...|.+++|+|.+ +.+|++++.|++|++||+..+......
T Consensus 86 Wd~~--~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~-------------------- 143 (316)
T 3bg1_A 86 WREE--NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK-------------------- 143 (316)
T ss_dssp ECCS--SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--------------------
T ss_pred EECC--CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--------------------
Confidence 9654 33335667788999999999999842 789999999999999998764321100
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC----------
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC---------- 423 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------- 423 (583)
.....|...+.+++|+|+
T Consensus 144 ----------------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 144 ----------------------------------------------------KINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp ----------------------------------------------------CBTTSSSSCBCCCEECCCCCC------C
T ss_pred ----------------------------------------------------eeeccccCCcceEEEccccCCccccccc
Confidence 000111134555555554
Q ss_pred -------CcEEEEEecCceEEEEEcccCc---cccccCCCCCCCcccCeeEEEEeCCC----cEEEEeecCCcEEEEEcc
Q psy14906 424 -------GNFVLIGYSSGHVDRFNIQSGA---HRGSYGHDNQPGHVGGVRGVVSDNLN----QIVISGGNDQTVKVWHFK 489 (583)
Q Consensus 424 -------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~~~dg~i~iwd~~ 489 (583)
+++|++|+.|+.|++||+..+. ....+ .+|...|.+++|+|++ ++|++++.|++|++|++.
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-----~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-----EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-----BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeec-----ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 5789999999999999997552 44445 7899999999999986 789999999999999997
Q ss_pred CCCC-C-ce-EEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEcc
Q psy14906 490 QTGK-P-PL-RSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDID 532 (583)
Q Consensus 490 ~~~~-~-~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 532 (583)
.... . .. ....+...|.+++|+|++++||+++.|+.|++|+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 6310 1 11 223456789999999999999999999999999975
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=6.4e-35 Score=284.73 Aligned_cols=298 Identities=16% Similarity=0.170 Sum_probs=246.1
Q ss_pred eEEEEEccCC--ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehh-----hhhhccccceEEEEEe
Q psy14906 185 KIILHNILTD--ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVEN-----QIKKAHRKVVTGAHFL 257 (583)
Q Consensus 185 ~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~ 257 (583)
.|..+|..++ +.+..+..+ ..+.+++|+|++. ++++++.++.|++||+.+++... .+ .+|...|.+++|+
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~v~~~~~~ 178 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKY-KKKLGFVETISIP 178 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHH-HTTCCEEEEEEEG
T ss_pred EEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccc-cccCCceeEEEEc
Confidence 4444555434 556666666 5677999999665 88888889999999999988766 45 6888999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEE-EeeCCCcEEEEEccccccceeeccc
Q psy14906 258 YNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNIL-SAAGDSTLRIFNTKSETSNKNLGIA 336 (583)
Q Consensus 258 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~ 336 (583)
++++++++++.|+.|++|+++ ..+.+..+..|...+.+++|+| +++.++ +++.|+.|++||+.+++....+..
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~- 252 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLK----TLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDK- 252 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETT----TCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCC-
T ss_pred CCCEEEEEECCCCEEEEEECC----CceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecC-
Confidence 999999999999999999765 4566777778889999999997 677775 555799999999987654333211
Q ss_pred hhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCce
Q psy14906 337 SANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPT 416 (583)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 416 (583)
...+.
T Consensus 253 ---------------------------------------------------------------------------~~~~~ 257 (433)
T 3bws_A 253 ---------------------------------------------------------------------------IGLPR 257 (433)
T ss_dssp ---------------------------------------------------------------------------CSEEE
T ss_pred ---------------------------------------------------------------------------CCCce
Confidence 03478
Q ss_pred EEEEccCCcEEEEEe--------cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcE-EEEeecCCcEEEEE
Q psy14906 417 CVYITHCGNFVLIGY--------SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQI-VISGGNDQTVKVWH 487 (583)
Q Consensus 417 ~~~~s~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd 487 (583)
+++++|+++++++++ .||.|++||+.+++....+ .|...+.+++|+|+++. +++++.|+.|++||
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE------EEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec------cCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 999999999999888 5889999999988877665 56778999999999974 56678999999999
Q ss_pred ccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeC---------------CceEEEEEccccceEEeecccccceeeEEe
Q psy14906 488 FKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLD---------------DFTVNIIDIDTCTIIRKLSGHMGQLTDADF 552 (583)
Q Consensus 488 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~ 552 (583)
+.++ +....+.+...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. ...+.+++|
T Consensus 332 ~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~ 408 (433)
T 3bws_A 332 LKEK--KVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDV 408 (433)
T ss_dssp TTTT--EEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEE
T ss_pred CCCC--cEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEE
Confidence 9987 78888888889999999999999988876 57999999999999888876 457899999
Q ss_pred cCCCcEEEEEeC-CCeEEEEeCCC
Q psy14906 553 SPDSRWLITASM-DCTIRVWDIPS 575 (583)
Q Consensus 553 s~d~~~l~s~~~-d~~i~vw~~~~ 575 (583)
+||+++|++++. |+.|++|+++.
T Consensus 409 s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 409 SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CTTSCEEEEEETTTTEEEEEEETT
T ss_pred cCCCCEEEEEECCCCeEEEEEecC
Confidence 999999988875 99999999863
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.5e-35 Score=279.52 Aligned_cols=292 Identities=10% Similarity=0.073 Sum_probs=239.9
Q ss_pred eeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCc---EEEEeeccCCceEEecccCCcceEEEeeCCCCC-EE
Q psy14906 104 VGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEE---TYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVD-II 177 (583)
Q Consensus 104 ~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 177 (583)
.....+|.+.|+++ +|++++|++++.||.|++||+.+++ ....+. .|...|.+++|+|+++ +|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-----------RYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-----------ECSSCEEEEEEEESSSEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-----------ecCCceEEEEECCCCCcEE
Confidence 34456899999997 8999999999999999999999877 233343 7899999999999999 99
Q ss_pred EEEecCCeEEEEEc-cCCceeEEEec--cCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC---------Ceehhhhhh
Q psy14906 178 GVGLSNKKIILHNI-LTDESLMEFIQ--TWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLED---------RQVENQIKK 245 (583)
Q Consensus 178 ~~~~~d~~i~iw~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~ 245 (583)
++++.||.|++||+ .+++. ..+.. |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+ .
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~ 148 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-K 148 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-S
T ss_pred EEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEE-e
Confidence 99999999999999 77654 67778 999999999999 77 899999999999999987 7777777 3
Q ss_pred ccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEcc
Q psy14906 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTK 325 (583)
Q Consensus 246 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 325 (583)
|...|.+++|+|++ +++++.|+.|++|++... ...........|...+.+++|+|.+++++++++.||.+++|++.
T Consensus 149 -~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLC-EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp -SCCCEEEEEECSSE--EEEEESTTEEEEEESSCC-TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred -eCCceEEEEecCCc--EEEEeCCCeEEEEECCcc-ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 89999999999887 899999999999977531 12233445567888999999996258899999999999999997
Q ss_pred cc------ccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccc
Q psy14906 326 SE------TSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDD 399 (583)
Q Consensus 326 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (583)
.. +....+.. ....
T Consensus 225 ~~~~~~~~~~~~~~~~---------------------------------------------------------~~~~--- 244 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRC---------------------------------------------------------HRLN--- 244 (342)
T ss_dssp TTCCSTTCTTCEEEEC---------------------------------------------------------CCCC---
T ss_pred CCCcccccccceeeec---------------------------------------------------------cccc---
Confidence 65 22221100 0000
Q ss_pred eeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCc-ccCeeEEEEeCCCcEEEEee
Q psy14906 400 MFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGH-VGGVRGVVSDNLNQIVISGG 478 (583)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~ 478 (583)
.....+...+.+++|+|++++|++++.||.|++||+.+++.+..+ ..| ...|.+++ |++++|++++
T Consensus 245 ------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 245 ------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----AKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp ------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----CCCSSSEEEEEE--ECSSEEEEEE
T ss_pred ------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh-----hcccCCCceEec--CCCCeEEEEe
Confidence 000012257999999999999999999999999999999988887 677 99999999 9999999999
Q ss_pred cCCc-EEEEE
Q psy14906 479 NDQT-VKVWH 487 (583)
Q Consensus 479 ~dg~-i~iwd 487 (583)
.||. .+.|.
T Consensus 312 ~Dg~~~~~~~ 321 (342)
T 1yfq_A 312 SDDTFKTNAA 321 (342)
T ss_dssp ECTHHHHCSS
T ss_pred cCCccccccc
Confidence 9998 55555
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.9e-34 Score=274.47 Aligned_cols=334 Identities=12% Similarity=0.108 Sum_probs=258.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEE-EEEecCCeEEEEEccCCceeEEE
Q psy14906 122 PHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDII-GVGLSNKKIILHNILTDESLMEF 200 (583)
Q Consensus 122 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~ 200 (583)
..+++++.|+.|++||+.+++.+..+. .+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~-----------~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP-----------VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-----------CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee-----------cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE
Confidence 357788899999999999999988886 44 458999999999987 66778999999999999999988
Q ss_pred eccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEE-EEEeCCCeEEEEEccC
Q psy14906 201 IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLL-VTSSPDNTLKLWIFDK 279 (583)
Q Consensus 201 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~~w~~~~ 279 (583)
..+ ..+.+++|+|++++++++++.++.|++||+.+++.+..+ . +...+.+++|+|+++.| ++++.++.|++||+.
T Consensus 71 ~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~- 146 (391)
T 1l0q_A 71 PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV- 146 (391)
T ss_dssp ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-
T ss_pred ECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-
Confidence 877 599999999999955567777899999999999888777 3 45578999999999977 678889999999765
Q ss_pred CCCCceeeEEeccCCCCCeeEEEeeCCCCEE-EEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCC
Q psy14906 280 ADGNGRLLRIREGHSAPPNYIQFYGNSSDNI-LSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFIL 358 (583)
Q Consensus 280 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (583)
.++.+..+..+ ..+..++|+| +++.+ ++++.++.|++||+.+++....+..
T Consensus 147 ---~~~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------------------- 198 (391)
T 1l0q_A 147 ---TKAVINTVSVG-RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKV----------------------- 198 (391)
T ss_dssp ---TTEEEEEEECC-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------------------
T ss_pred ---CCcEEEEEecC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEec-----------------------
Confidence 45666666655 4568999997 67776 6778899999999987654332210
Q ss_pred CccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe---cCce
Q psy14906 359 PPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY---SSGH 435 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~ 435 (583)
...+.+++|+|+++++++++ .++.
T Consensus 199 -----------------------------------------------------~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 199 -----------------------------------------------------EAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp -----------------------------------------------------SSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred -----------------------------------------------------CCCccceEECCCCCEEEEEecCcCCCc
Confidence 13578899999999999888 6899
Q ss_pred EEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEE-EEeecCCcEEEEEccCCCCCceEEeeccCCee----eEE-
Q psy14906 436 VDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIV-ISGGNDQTVKVWHFKQTGKPPLRSIKLDNGIS----FFR- 509 (583)
Q Consensus 436 i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~----~~~- 509 (583)
|++||+.+++....+ ..| ..+.+++|+|++++| ++++.|+.|++||+.++ +.+..+..+.... .+.
T Consensus 226 v~~~d~~~~~~~~~~-----~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~ 297 (391)
T 1l0q_A 226 VSMIDTGTNKITARI-----PVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN--TITATMAVGKNPYASGQFIGS 297 (391)
T ss_dssp EEEEETTTTEEEEEE-----ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEECSSSEECCSSCEEE
T ss_pred EEEEECCCCeEEEEE-----ecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC--cEEEEEECCcCCCccceeeec
Confidence 999999999887776 344 357899999999877 67788999999999987 6666665432211 122
Q ss_pred -----------eccCC----------cEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEE---eCC
Q psy14906 510 -----------THQES----------SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITA---SMD 565 (583)
Q Consensus 510 -----------~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~---~~d 565 (583)
|+.+. ..+...+.|...++||+.++... .+.. ....|+++|.|.++. +.|
T Consensus 298 ~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~--~~~~~~~~g~y~~~~~~~~~~ 371 (391)
T 1l0q_A 298 IPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQN--PTHTYSETGIYTVRLTVSNSN 371 (391)
T ss_dssp CSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSS--CEECCSSCEEEEEEEEEEETT
T ss_pred ccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----CcCC--CeEEeCCCceEEEEEEEECCC
Confidence 22221 23555566888999999887642 1222 235799999987754 355
Q ss_pred C
Q psy14906 566 C 566 (583)
Q Consensus 566 ~ 566 (583)
|
T Consensus 372 g 372 (391)
T 1l0q_A 372 G 372 (391)
T ss_dssp E
T ss_pred C
Confidence 5
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.6e-36 Score=289.27 Aligned_cols=293 Identities=14% Similarity=0.187 Sum_probs=234.1
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe----ehhhhhhccccceEEEEEec-CCCEEEEEeCCCeEEEEEccCC
Q psy14906 206 PVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ----VENQIKKAHRKVVTGAHFLY-NEPLLVTSSPDNTLKLWIFDKA 280 (583)
Q Consensus 206 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 280 (583)
....++++|+...++++++.||.|++|++.... ....+ .+|.+.|.+++|+| ++++|++++.|+.|++|++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345688888876455568889999999996642 23344 68999999999999 9999999999999999977643
Q ss_pred CCC---ceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccC
Q psy14906 281 DGN---GRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFI 357 (583)
Q Consensus 281 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (583)
... ...+..+.+|...|.+++|+|....+|++++.||.|++||+.+++....+.
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------- 171 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG----------------------- 171 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-----------------------
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-----------------------
Confidence 111 155778889999999999998333799999999999999998876543321
Q ss_pred CCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEE
Q psy14906 358 LPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVD 437 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 437 (583)
...+...+.+++|+|++++|++++.||.|+
T Consensus 172 --------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 201 (402)
T 2aq5_A 172 --------------------------------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVR 201 (402)
T ss_dssp --------------------------------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred --------------------------------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEE
Confidence 011226799999999999999999999999
Q ss_pred EEEcccCccccccCCCCCCCcccC-eeEEEEeCCCcEEEEe---ecCCcEEEEEccCCCCCc-eEEeeccCCeeeEEecc
Q psy14906 438 RFNIQSGAHRGSYGHDNQPGHVGG-VRGVVSDNLNQIVISG---GNDQTVKVWHFKQTGKPP-LRSIKLDNGISFFRTHQ 512 (583)
Q Consensus 438 i~d~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~---~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~ 512 (583)
+||+.+++....+. ..|.+. +.+++|+|++++|+++ +.|+.|++||+.+..... ...+.+...+.+++|+|
T Consensus 202 iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 202 VIEPRKGTVVAEKD----RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP 277 (402)
T ss_dssp EEETTTTEEEEEEE----CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET
T ss_pred EEeCCCCceeeeec----cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC
Confidence 99999988877762 256665 8999999999999999 799999999999873211 23345667899999999
Q ss_pred CCcEEEE-EeCCceEEEEEccccce-EEeecc--cccceeeEEecCCCcEEEEEeCCCeEEEEeCCCccc
Q psy14906 513 ESSMLAV-CLDDFTVNIIDIDTCTI-IRKLSG--HMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQL 578 (583)
Q Consensus 513 ~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~--h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~~ 578 (583)
++++|++ ++.|+.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++.++++
T Consensus 278 ~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 278 DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 9999875 55799999999998874 444444 5589999999999998874 567999999988654
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.9e-34 Score=276.01 Aligned_cols=311 Identities=12% Similarity=0.112 Sum_probs=250.3
Q ss_pred CEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEE
Q psy14906 175 DIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGA 254 (583)
Q Consensus 175 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 254 (583)
.++++++.|+.|++||+.+++.+..+..| ..+.+++|+|+++.++++++.|+.|++||+.+++.+..+ .. ...+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~-~~~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PA-GSSPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-EC-SSSEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-EC-CCCccce
Confidence 46788889999999999999999999888 569999999999855578889999999999999988887 33 3499999
Q ss_pred EEecCCCEEEEE-eCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEE-EEeeCCCcEEEEEcccccccee
Q psy14906 255 HFLYNEPLLVTS-SPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNI-LSAAGDSTLRIFNTKSETSNKN 332 (583)
Q Consensus 255 ~~~~~~~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~ 332 (583)
+|+|++++|+.+ +.++.|++||+. ..+.+..+..+ ..+.+++|+| +++.+ ++++.++.|++||+.+++....
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~----~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTT----SNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETT----TTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEECCCCEEEEEECC----CCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999987654 467999999765 44556666544 4679999997 77766 6888899999999987755433
Q ss_pred eccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCC
Q psy14906 333 LGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQ 412 (583)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (583)
+.. .
T Consensus 154 ~~~----------------------------------------------------------------------------~ 157 (391)
T 1l0q_A 154 VSV----------------------------------------------------------------------------G 157 (391)
T ss_dssp EEC----------------------------------------------------------------------------C
T ss_pred Eec----------------------------------------------------------------------------C
Confidence 211 0
Q ss_pred CCceEEEEccCCcEE-EEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEee---cCCcEEEEEc
Q psy14906 413 SKPTCVYITHCGNFV-LIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG---NDQTVKVWHF 488 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~ 488 (583)
..+.+++|+|+++.+ +++..++.|++||+.+++....+ .+...+.+++|+|++++|++++ .++.|++||+
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 346789999999887 56778899999999998877766 4566899999999999998887 6899999999
Q ss_pred cCCCCCceEEeeccCCeeeEEeccCCcEE-EEEeCCceEEEEEccccceEEeeccccccee---eEE------------e
Q psy14906 489 KQTGKPPLRSIKLDNGISFFRTHQESSML-AVCLDDFTVNIIDIDTCTIIRKLSGHMGQLT---DAD------------F 552 (583)
Q Consensus 489 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~---~l~------------~ 552 (583)
.++ +.+..+..+..+.+++|+|++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |
T Consensus 232 ~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 309 (391)
T 1l0q_A 232 GTN--KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF 309 (391)
T ss_dssp TTT--EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred CCC--eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence 988 778888888889999999999977 5667899999999999999888877655432 122 2
Q ss_pred cCCC----------cEEEEEeCCCeEEEEeCCCccc
Q psy14906 553 SPDS----------RWLITASMDCTIRVWDIPSSQL 578 (583)
Q Consensus 553 s~d~----------~~l~s~~~d~~i~vw~~~~~~~ 578 (583)
+.+. -.+...+.|..+++|++.+|..
T Consensus 310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 2221 3456667788999999988764
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=276.74 Aligned_cols=302 Identities=11% Similarity=0.120 Sum_probs=236.6
Q ss_pred ceeeeeecccCccEEEE--ccC---CCEEEEEeCCCcEEEEEcCC-CcEE-EEeeccCCceEEecccCCcceEEEeeCCC
Q psy14906 101 IDIVGTYKGHTSPVHLI--LPF---GPHLISVDEESNVKVWDIKA-EETY-LELSFDNDTFKIMGKRWNSCVNVLEPSPV 173 (583)
Q Consensus 101 ~~~~~~~~~h~~~v~~i--s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 173 (583)
.+.+..+.+|.+.|+++ +|+ |++|++++.||.|++||+.+ ++.+ ..+. .|...|.+++|+|+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~ 97 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-----------MHTGPVLDVCWSDD 97 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-----------ECSSCEEEEEECTT
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-----------cccCCEEEEEECcC
Confidence 45677889999999998 888 69999999999999999998 5554 5555 89999999999999
Q ss_pred CCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEE--ecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccce
Q psy14906 174 VDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSF--RTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVV 251 (583)
Q Consensus 174 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 251 (583)
+++|++++.||.|++||+.+++.+. +..|...|.+++| +|++. +|++++.||.|++||+++++.+..+ ..+ ..+
T Consensus 98 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~-~~~-~~~ 173 (368)
T 3mmy_A 98 GSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVL-QLP-ERC 173 (368)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEE-ECS-SCE
T ss_pred CCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEE-ecC-CCc
Confidence 9999999999999999999888766 5678899999999 88888 8999999999999999999888887 444 466
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCE----EEEeeCCCcEEEEEcccc
Q psy14906 252 TGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDN----ILSAAGDSTLRIFNTKSE 327 (583)
Q Consensus 252 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~ 327 (583)
.++.+. ...+++++.++.+++|+++.. ..........+...+.++.+.+ +... +++++.||.|++||+...
T Consensus 174 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 174 YCADVI--YPMAVVATAERGLIVYQLENQ--PSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp EEEEEE--TTEEEEEEGGGCEEEEECSSS--CEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred eEEEec--CCeeEEEeCCCcEEEEEeccc--cchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCC
Confidence 666665 457888889999999977543 2222222233445566777765 3444 999999999999999876
Q ss_pred cc---ceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeec
Q psy14906 328 TS---NKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVP 404 (583)
Q Consensus 328 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 404 (583)
.. ...+... ... ..
T Consensus 249 ~~~~~~~~~~~~---------------------------------------------------------~~~------~~ 265 (368)
T 3mmy_A 249 NPAKDNFTFKCH---------------------------------------------------------RSN------GT 265 (368)
T ss_dssp CHHHHSEEEECS---------------------------------------------------------EEC--------
T ss_pred Cccccceeeeee---------------------------------------------------------ecc------cc
Confidence 32 1111000 000 00
Q ss_pred ccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEE
Q psy14906 405 ERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVK 484 (583)
Q Consensus 405 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 484 (583)
......+...+.+++|+|++++|++++.||.|++||+.+++.+..+ ..|...|++++|+|++++|++++.|+..+
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS-----EQLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----CCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-----cCCCCCceEEEECCCCCeEEEEecccccc
Confidence 0000011146999999999999999999999999999999998888 78999999999999999999999998766
Q ss_pred EEEccC
Q psy14906 485 VWHFKQ 490 (583)
Q Consensus 485 iwd~~~ 490 (583)
.|++..
T Consensus 341 ~~~~~~ 346 (368)
T 3mmy_A 341 GHEFYN 346 (368)
T ss_dssp CGGGCC
T ss_pred cccccC
Confidence 665543
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=282.32 Aligned_cols=285 Identities=10% Similarity=0.099 Sum_probs=221.5
Q ss_pred CcceEEEeeCCCCCEEEEEecCCeEEEEEccCCc---eeEEEecc-----------------------------------
Q psy14906 162 NSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDE---SLMEFIQT----------------------------------- 203 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~----------------------------------- 203 (583)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578899999999966655 57899999999998 66555533
Q ss_pred -------------------CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC--CCeehhhhhh--ccccceEEEEEecCC
Q psy14906 204 -------------------WGPVTALSFRTDGPPMMVSGSNTGHLTVWNLE--DRQVENQIKK--AHRKVVTGAHFLYNE 260 (583)
Q Consensus 204 -------------------~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~--~~~~~v~~~~~~~~~ 260 (583)
.+.|.+++|+|+++.++++++.||.|++||+. +++.+..+ . .|...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEEEcCCC
Confidence 23699999999999335999999999999999 78777776 4 567899999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC---CCEEEEeeCCCcEEEEEccccccceeeccch
Q psy14906 261 PLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS---SDNILSAAGDSTLRIFNTKSETSNKNLGIAS 337 (583)
Q Consensus 261 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 337 (583)
++|++++.++.+++|++............+.+|...|.+++|+| + +++|++++.|+.|++||+.++.....+
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---- 236 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKW---- 236 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEE----
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeee----
Confidence 99999999999999977543211113346678999999999998 6 789999999999999998654321110
Q ss_pred hhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceE
Q psy14906 338 ANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTC 417 (583)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 417 (583)
T Consensus 237 -------------------------------------------------------------------------------- 236 (450)
T 2vdu_B 237 -------------------------------------------------------------------------------- 236 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceE
Q psy14906 418 VYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLR 497 (583)
Q Consensus 418 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 497 (583)
+ .+|...|.+++|+ ++++|++++.|+.|++||+.++ +++.
T Consensus 237 --------------------------------~-----~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~--~~~~ 276 (450)
T 2vdu_B 237 --------------------------------L-----FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG--KNLS 276 (450)
T ss_dssp --------------------------------C-----CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC--CEEE
T ss_pred --------------------------------e-----cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC--cEee
Confidence 1 4677777788887 7777888877888888887776 5555
Q ss_pred Eeec--------------------------cCCeeeEEeccCCcEEEEEe-CCceEEEEEc--ccc---ceEEeeccccc
Q psy14906 498 SIKL--------------------------DNGISFFRTHQESSMLAVCL-DDFTVNIIDI--DTC---TIIRKLSGHMG 545 (583)
Q Consensus 498 ~~~~--------------------------~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~--~~~---~~~~~~~~h~~ 545 (583)
.+.. ...+.+++|+|++++|++++ .++.|++|++ .++ +.+..+.+| .
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~ 355 (450)
T 2vdu_B 277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-Y 355 (450)
T ss_dssp EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-S
T ss_pred eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-C
Confidence 5542 24688999999999999999 8999999999 555 677778888 8
Q ss_pred ceeeEEecCCCcEEEEEeC------CCeEEEEeCC
Q psy14906 546 QLTDADFSPDSRWLITASM------DCTIRVWDIP 574 (583)
Q Consensus 546 ~v~~l~~s~d~~~l~s~~~------d~~i~vw~~~ 574 (583)
.|.+++|+|++.+++.++. +..|.+|.+.
T Consensus 356 ~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 356 NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 8999999996544444443 4557888764
No 113
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=9e-34 Score=305.27 Aligned_cols=406 Identities=12% Similarity=0.082 Sum_probs=306.0
Q ss_pred CCCCeEEEEeeCeEEEEEcCCeEEEEeccceeeeeecccCccEEEE--ccCCCEEEEEeCC------CcEEEEEcCCCcE
Q psy14906 72 HEDDITCLSSDFFHIYTSANNIIYAWRRGIDIVGTYKGHTSPVHLI--LPFGPHLISVDEE------SNVKVWDIKAEET 143 (583)
Q Consensus 72 h~~~v~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~d------g~i~iwd~~~~~~ 143 (583)
+...+.+.+++|+.++...++.|++|+..+...+.+.+|...+.++ ||||++||+++.+ ..|++||+.+++
T Consensus 13 ~~~~~~~~~~S~~~iaf~~~~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~- 91 (1045)
T 1k32_A 13 MPNLLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE- 91 (1045)
T ss_dssp CCCCCEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-
T ss_pred ccceEeCcEEeCCEEEEEECCcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-
Confidence 4566778888887777777789999999777778889999999886 9999999987643 379999999876
Q ss_pred EEEeeccCCceEEecccCCcce-------EEEeeCCCCCEEEEEecC------CeEEEEEccCCceeEEEeccCCCeEEE
Q psy14906 144 YLELSFDNDTFKIMGKRWNSCV-------NVLEPSPVVDIIGVGLSN------KKIILHNILTDESLMEFIQTWGPVTAL 210 (583)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i-------~~~~~s~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~v~~~ 210 (583)
...+. .|...+ ..++|+|||+++++++.+ ..|.+|++.+++... +..+ ....+
T Consensus 92 ~~~lt-----------~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~--~~~~~ 157 (1045)
T 1k32_A 92 IKRIT-----------YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG--PATHI 157 (1045)
T ss_dssp EEECC-----------CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC--SCSEE
T ss_pred eEEcc-----------cCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC--Cccee
Confidence 45555 677777 999999999977777644 468888887776543 3333 34567
Q ss_pred EEecCCCCEEEEEcC------------CCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy14906 211 SFRTDGPPMMVSGSN------------TGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFD 278 (583)
Q Consensus 211 ~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 278 (583)
+|+| | ++++++. +...++|....+.....+ .+|...+.++.|+++ .++++++.++.+++|.++
T Consensus 158 ~~sp-G--~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~ 232 (1045)
T 1k32_A 158 LFAD-G--RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTD 232 (1045)
T ss_dssp EEET-T--EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEE
T ss_pred eeCC-C--EEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC-cCCCCcccceEEeCC-EEEEEEeccCceEEEEEe
Confidence 7999 7 6777642 234566654332334445 689999999999988 677778888999999887
Q ss_pred CCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCC
Q psy14906 279 KADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFIL 358 (583)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (583)
... .....+..|. .+...+|+| +++.|+.+. ++.|++||+..... ..+.....
T Consensus 233 ~~g---~~~~~l~~~~-~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~~-------------------- 285 (1045)
T 1k32_A 233 LDG---KDLRKHTSFT-DYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKI-EKIEIGDL-------------------- 285 (1045)
T ss_dssp TTS---CSCEECCCCC-SSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCE-EECCCCCC--------------------
T ss_pred CCC---CcceEecCCC-CcceeeEcC-CCCEEEEEe-CCEEEEecCCceEe-eeeccCcc--------------------
Confidence 532 2334455554 467789998 788888874 78999999833221 11100000
Q ss_pred CccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEc-cCCcEEEEEecCceEE
Q psy14906 359 PPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYIT-HCGNFVLIGYSSGHVD 437 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~ 437 (583)
.. ......+...+.+++|+ |||++++++. ++.|+
T Consensus 286 -------------------------------------~~-------~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 286 -------------------------------------ES-------PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF 320 (1045)
T ss_dssp -------------------------------------CB-------CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred -------------------------------------cc-------cccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence 00 00000011458899999 9999999887 78899
Q ss_pred EEEcccCccccccCCCCCCCccc-CeeEEEEeCCCcEEEEeecCCcEE-EEEccCCCCCceEEeeccCCeeeEEeccCCc
Q psy14906 438 RFNIQSGAHRGSYGHDNQPGHVG-GVRGVVSDNLNQIVISGGNDQTVK-VWHFKQTGKPPLRSIKLDNGISFFRTHQESS 515 (583)
Q Consensus 438 i~d~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 515 (583)
+|+..++.... + ..|.. .+..++|+ |++.|++++.++.+. +|++..+ +......+...+..++|+|||+
T Consensus 321 ~~~~~~~~~~~-~-----~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~--~~~~l~~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 321 IQDVSGTYVLK-V-----PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp EECTTSSBEEE-C-----SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--CEEECCCCCCSEEEEEECTTSS
T ss_pred EEcCCCCceEE-c-----cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--CceEecCCccceeeeEECCCCC
Confidence 99998776544 3 46666 89999999 999999998888888 8998876 4444334446899999999999
Q ss_pred EEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCC----------eEEEEeCCCccc
Q psy14906 516 MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDC----------TIRVWDIPSSQL 578 (583)
Q Consensus 516 ~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~----------~i~vw~~~~~~~ 578 (583)
+|++++.++.|++||+.+++....+.+|...+.+++|||||++|++++.++ .|++||+.+++.
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred EEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 999999999999999999998888878999999999999999999887654 899999998873
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.9e-35 Score=282.79 Aligned_cols=284 Identities=13% Similarity=0.163 Sum_probs=231.9
Q ss_pred ceEEEeeCCCCCEEE-EEecCCeEEEEEccCC----ceeEEEeccCCCeEEEEEec-CCCCEEEEEcCCCcEEEEeCCCC
Q psy14906 164 CVNVLEPSPVVDIIG-VGLSNKKIILHNILTD----ESLMEFIQTWGPVTALSFRT-DGPPMMVSGSNTGHLTVWNLEDR 237 (583)
Q Consensus 164 ~i~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~ 237 (583)
....++++|+...++ +++.+|.|++|++... +.+..+.+|.+.|++++|+| +++ +|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCeEEEEEccCC
Confidence 344578888776554 4788999999998654 34456778999999999999 777 9999999999999999987
Q ss_pred -------eehhhhhhccccceEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCCceeeEEe--ccCCCCCeeEEEeeCCC
Q psy14906 238 -------QVENQIKKAHRKVVTGAHFLYNE-PLLVTSSPDNTLKLWIFDKADGNGRLLRIR--EGHSAPPNYIQFYGNSS 307 (583)
Q Consensus 238 -------~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 307 (583)
+.+..+ .+|...|.+++|+|++ ++|++++.|+.|++||+. ..+.+..+ .+|...|.+++|+| ++
T Consensus 115 ~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~ 188 (402)
T 2aq5_A 115 GLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG----TGAAVLTLGPDVHPDTIYSVDWSR-DG 188 (402)
T ss_dssp CCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT----TTEEEEEECTTTCCSCEEEEEECT-TS
T ss_pred CCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC----CCCccEEEecCCCCCceEEEEECC-CC
Confidence 456666 7899999999999998 699999999999999775 45777777 78999999999998 89
Q ss_pred CEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceE
Q psy14906 308 DNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKV 387 (583)
Q Consensus 308 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 387 (583)
.+|++++.||.|++||+++++....+..
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------------------------------- 216 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGTVVAEKDR---------------------------------------------------- 216 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEEC----------------------------------------------------
T ss_pred CEEEEEecCCcEEEEeCCCCceeeeecc----------------------------------------------------
Confidence 9999999999999999988765433200
Q ss_pred EEeecCcccccceeeecccccccCC-CCceEEEEccCCcEEEEE---ecCceEEEEEcccCccc-cccCCCCCCCcccCe
Q psy14906 388 SLWSFYKSKMDDMFLVPERCKQAKQ-SKPTCVYITHCGNFVLIG---YSSGHVDRFNIQSGAHR-GSYGHDNQPGHVGGV 462 (583)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~---~~dg~i~i~d~~~~~~~-~~~~~~~~~~h~~~v 462 (583)
.+. ..+.++.|+|+++++++| +.++.|++||+.+++.. .... ..|...+
T Consensus 217 ----------------------~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v 270 (402)
T 2aq5_A 217 ----------------------PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE----LDTSSGV 270 (402)
T ss_dssp ----------------------SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE----CCCCSSC
T ss_pred ----------------------CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe----ccCCCce
Confidence 011 347899999999999999 79999999999987652 2221 3577889
Q ss_pred eEEEEeCCCcEEEE-eecCCcEEEEEccCCCCCc-e---EEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccce
Q psy14906 463 RGVVSDNLNQIVIS-GGNDQTVKVWHFKQTGKPP-L---RSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI 536 (583)
Q Consensus 463 ~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~-~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 536 (583)
.+++|+|++++|++ ++.||.|++||+.++ +. + ..+.+...+.+++|+|++.++++ .++.+++|++.+++.
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~--~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSE--APFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSS--TTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCC--CcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99999999998864 557999999999987 42 3 33344589999999999998875 567999999988654
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2e-34 Score=271.66 Aligned_cols=291 Identities=12% Similarity=0.151 Sum_probs=213.0
Q ss_pred EEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEE-EEE
Q psy14906 188 LHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLL-VTS 266 (583)
Q Consensus 188 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~ 266 (583)
+|++.+.+++..+..|...|++++|+|||+ +|++|+.++ +++||+.+++..... +...+..+++.++++.+ +++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECTTSSEEEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcCCCCEEEEEE
Confidence 566777778878889999999999999999 888888775 789999887765543 22357888899988877 567
Q ss_pred eCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEcccc-ccceeeccchhhhhhhhh
Q psy14906 267 SPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSE-TSNKNLGIASANRNNLKR 345 (583)
Q Consensus 267 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 345 (583)
+.|+.|++||+. .++.+..+. +...|.++.+++ + .++.+ .|+.|++||+.+. +....+..
T Consensus 78 ~~d~~v~iWd~~----~~~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---------- 138 (355)
T 3vu4_A 78 GVKEVVHIWDDV----KKQDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---------- 138 (355)
T ss_dssp SSTTEEEEEETT----TTEEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE----------
T ss_pred CCccEEEEEECC----CCcEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc----------
Confidence 778999999764 456666665 567899999975 2 44444 4789999999876 43332210
Q ss_pred hcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCc
Q psy14906 346 KNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGN 425 (583)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 425 (583)
....+++++ .
T Consensus 139 --------------------------------------------------------------------~~~~~~~s~--~ 148 (355)
T 3vu4_A 139 --------------------------------------------------------------------FGGVCEFSN--G 148 (355)
T ss_dssp --------------------------------------------------------------------EEEEEEEET--T
T ss_pred --------------------------------------------------------------------CCceEEEEc--c
Confidence 122344555 5
Q ss_pred EEEE--EecCceEEEEEcccCc----------------cccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCc-EEEE
Q psy14906 426 FVLI--GYSSGHVDRFNIQSGA----------------HRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQT-VKVW 486 (583)
Q Consensus 426 ~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iw 486 (583)
++++ |+.+|.|++||+.++. ....+ .+|...|++++|+|++++|++++.|++ |++|
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-----KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------CCEEE-----CCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-----EccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 5555 6889999999998765 14445 799999999999999999999999998 9999
Q ss_pred EccCCCCCceEEee---ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceE--Eeec--------------------
Q psy14906 487 HFKQTGKPPLRSIK---LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTII--RKLS-------------------- 541 (583)
Q Consensus 487 d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-------------------- 541 (583)
|+.++ +++..+. +...|.+++|+|+|++|++++.|+.|++||++.+... ..+.
T Consensus 224 d~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 224 KTEDG--VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp ETTTC--CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC
T ss_pred ECCCC--cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec
Confidence 99998 8888887 6789999999999999999999999999999765311 1111
Q ss_pred -ccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCcccc
Q psy14906 542 -GHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLI 579 (583)
Q Consensus 542 -~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~~~ 579 (583)
.+......++|++|+++|++++.||.+++|++..++..
T Consensus 302 ~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 302 VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 11223477999999999999999999999998876543
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.6e-34 Score=277.15 Aligned_cols=258 Identities=19% Similarity=0.298 Sum_probs=213.2
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC----------CeehhhhhhccccceEEEEEecCCC-EEEEE
Q psy14906 198 MEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLED----------RQVENQIKKAHRKVVTGAHFLYNEP-LLVTS 266 (583)
Q Consensus 198 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~ 266 (583)
.....|.+.|++++|+|++..+|++++.+|.|++||+.+ .+.+..+ .+|...|.+++|+|++. +|+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEE
Confidence 344578899999999998444999999999999999986 4666667 78999999999999998 99999
Q ss_pred eCCCeEEEEEccCCCCCc---eeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhh
Q psy14906 267 SPDNTLKLWIFDKADGNG---RLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNL 343 (583)
Q Consensus 267 ~~d~~i~~w~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 343 (583)
+.||.|++|++....... .....+.+|...|.+++|+|.++..|++++.||.|++||++++...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~------------- 267 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS------------- 267 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-------------
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-------------
Confidence 999999999876422111 1245677899999999999867888999999999999998754210
Q ss_pred hhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC
Q psy14906 344 KRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC 423 (583)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 423 (583)
T Consensus 268 -------------------------------------------------------------------------------- 267 (430)
T 2xyi_A 268 -------------------------------------------------------------------------------- 267 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc-EEEEeecCCcEEEEEccCCCCCceEEee-c
Q psy14906 424 GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ-IVISGGNDQTVKVWHFKQTGKPPLRSIK-L 501 (583)
Q Consensus 424 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 501 (583)
+....+ ..|...|++++|+|+++ +|++++.||.|++||++... .++..+. +
T Consensus 268 ---------------------~~~~~~-----~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h 320 (430)
T 2xyi_A 268 ---------------------KPSHTV-----DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESH 320 (430)
T ss_dssp ---------------------SCSEEE-----ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECC
T ss_pred ---------------------cceeEe-----ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecC
Confidence 111111 36788899999999887 68899999999999998743 4555554 6
Q ss_pred cCCeeeEEeccCCc-EEEEEeCCceEEEEEccc--------------cceEEeecccccceeeEEecCCCc-EEEEEeCC
Q psy14906 502 DNGISFFRTHQESS-MLAVCLDDFTVNIIDIDT--------------CTIIRKLSGHMGQLTDADFSPDSR-WLITASMD 565 (583)
Q Consensus 502 ~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~--------------~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~d 565 (583)
...|.+++|+|+++ +|++++.|+.|++||+.. .+++..+.+|...|++++|+|+++ +|++++.|
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence 67999999999996 699999999999999987 367788889999999999999999 89999999
Q ss_pred CeEEEEeCCCc
Q psy14906 566 CTIRVWDIPSS 576 (583)
Q Consensus 566 ~~i~vw~~~~~ 576 (583)
|.|++|++..+
T Consensus 401 g~i~iw~~~~~ 411 (430)
T 2xyi_A 401 NIMQVWQMAEN 411 (430)
T ss_dssp SEEEEEEECHH
T ss_pred CCEEEeEcccc
Confidence 99999999764
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.4e-34 Score=271.13 Aligned_cols=309 Identities=10% Similarity=0.048 Sum_probs=215.2
Q ss_pred EEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEec
Q psy14906 135 VWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRT 214 (583)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 214 (583)
||++.+.+.+.... .|...|.+++|+|||++||+|+.++ +++||+.+++.......+ .+..+++.+
T Consensus 3 i~s~~~~~~~~~~~-----------~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~ 68 (355)
T 3vu4_A 3 LGSMITRNPIVPEN-----------HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLH 68 (355)
T ss_dssp ---------------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECT
T ss_pred cccccccCCccccc-----------cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcC
Confidence 45666666665555 8999999999999999999998775 789999887766554433 588889999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCC
Q psy14906 215 DGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHS 294 (583)
Q Consensus 215 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 294 (583)
+++.++++++.|++|++||..+++++..+ .+...|.+++|+++. ++.+ .|+.+++|++.... +.+..+..
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~~~--~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~---~~~~~~~~-- 138 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQDVSRI--KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW---KRITDDIR-- 138 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEEEEEE--ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC---CBSSCCEE--
T ss_pred CCCEEEEEECCccEEEEEECCCCcEEEEE--ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc---eeeEEecc--
Confidence 88845577888999999999999998887 477899999998764 4444 47899999876421 22222222
Q ss_pred CCCeeEEEeeCCCCEEEE--eeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeeccccc
Q psy14906 295 APPNYIQFYGNSSDNILS--AAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREK 372 (583)
Q Consensus 295 ~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (583)
+...+++++ ..++. ++.||.|++||+.++..........
T Consensus 139 -~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~----------------------------------- 179 (355)
T 3vu4_A 139 -FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV----------------------------------- 179 (355)
T ss_dssp -EEEEEEEET---TEEEEEESSCTTCEEEEECCC----------------------------------------------
T ss_pred -CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccc-----------------------------------
Confidence 334455654 45665 6889999999998764221100000
Q ss_pred ccccEEEEecCCceEEEeecCcccccceeeec-ccccccCCCCceEEEEccCCcEEEEEecCce-EEEEEcccCcccccc
Q psy14906 373 DWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVP-ERCKQAKQSKPTCVYITHCGNFVLIGYSSGH-VDRFNIQSGAHRGSY 450 (583)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~ 450 (583)
......+ ......|...|.+++|+|+|++|++|+.||+ |++||+.+++.+..+
T Consensus 180 -------------------------~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 180 -------------------------QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp --------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred -------------------------cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 0000001 1122334578999999999999999999998 999999999998888
Q ss_pred CCCCCCC-cccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEee------------------c----cCCeee
Q psy14906 451 GHDNQPG-HVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK------------------L----DNGISF 507 (583)
Q Consensus 451 ~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~----~~~v~~ 507 (583)
. .+ |...|.+++|+|++++|++++.|++|++||+..........+. . ..+...
T Consensus 235 ~----~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T 3vu4_A 235 R----RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310 (355)
T ss_dssp E----CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred E----cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence 2 14 9999999999999999999999999999999765212211110 0 123477
Q ss_pred EEeccCCcEEEEEeCCceEEEEEccccc
Q psy14906 508 FRTHQESSMLAVCLDDFTVNIIDIDTCT 535 (583)
Q Consensus 508 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 535 (583)
++|++++++|++++.||.+++|++..++
T Consensus 311 ~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 311 IAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999999999999999999987543
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-35 Score=302.77 Aligned_cols=261 Identities=15% Similarity=0.183 Sum_probs=215.7
Q ss_pred eeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcC--CCcEEEEeeccCCceEEecccCCcceEEEeeCCC--CCEE
Q psy14906 104 VGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIK--AEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPV--VDII 177 (583)
Q Consensus 104 ~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l 177 (583)
...+.+|.++|+++ +|+|++|++|+.||.|++||+. +++.+..+. +|...|.+++|+|+ +++|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-----------~h~~~V~~l~~s~~~~~~~l 70 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----------GHEGPVWRVDWAHPKFGTIL 70 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-----------CCSSCEEEEEECCTTSCSEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-----------CCcCceEEEEecCCCCCCEE
Confidence 45688999999998 8999999999999999999998 445666666 89999999999988 9999
Q ss_pred EEEecCCeEEEEEccCCc--eeEEEeccCCCeEEEEEecC--CCCEEEEEcCCCcEEEEeCCCCee--hhhhhhccccce
Q psy14906 178 GVGLSNKKIILHNILTDE--SLMEFIQTWGPVTALSFRTD--GPPMMVSGSNTGHLTVWNLEDRQV--ENQIKKAHRKVV 251 (583)
Q Consensus 178 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v 251 (583)
++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ ++ ++++|+.||.|++||+.++.. ...+ .+|...|
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v 148 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGV 148 (753)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEE-ECCSSCE
T ss_pred EEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEe-ecCCCce
Confidence 999999999999999887 77778899999999999999 77 999999999999999987732 3334 6799999
Q ss_pred EEEEEec-------------CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC--CCEEEEeeCC
Q psy14906 252 TGAHFLY-------------NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS--SDNILSAAGD 316 (583)
Q Consensus 252 ~~~~~~~-------------~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d 316 (583)
.+++|+| ++.+|++++.||.|++||+............+.+|...|.+++|+|.+ +.++++++.|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 9999999 589999999999999998875544446777889999999999999832 8999999999
Q ss_pred CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccc
Q psy14906 317 STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSK 396 (583)
Q Consensus 317 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 396 (583)
|.|++||+.++.......
T Consensus 229 g~I~iwd~~~~~~~~~~~-------------------------------------------------------------- 246 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKT-------------------------------------------------------------- 246 (753)
T ss_dssp SCEEEEEESSSSSCCBCC--------------------------------------------------------------
T ss_pred CEEEEecCCCCCCcceeE--------------------------------------------------------------
Confidence 999999998753211100
Q ss_pred ccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccc
Q psy14906 397 MDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHR 447 (583)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 447 (583)
......+...+.+++|+|+++++++++.||.|++|++..+...
T Consensus 247 --------~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~ 289 (753)
T 3jro_A 247 --------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (753)
T ss_dssp --------BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred --------EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCc
Confidence 0001112367899999999999999999999999999865543
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=300.42 Aligned_cols=257 Identities=14% Similarity=0.153 Sum_probs=215.7
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEcc--CCceeEEEeccCCCeEEEEEecC--CCCEEEEEcCCCcEEEEeCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNIL--TDESLMEFIQTWGPVTALSFRTD--GPPMMVSGSNTGHLTVWNLE 235 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~ 235 (583)
+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|.+.|++++|+|+ ++ +|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCeEEEEECC
Confidence 899999999999999999999999999999998 56778889999999999999988 77 99999999999999999
Q ss_pred CCe--ehhhhhhccccceEEEEEecC--CCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeC------
Q psy14906 236 DRQ--VENQIKKAHRKVVTGAHFLYN--EPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN------ 305 (583)
Q Consensus 236 ~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 305 (583)
+++ ....+ .+|...|.+++|+|+ ++++++++.||.|++||+... .......+.+|...|.+++|+|.
T Consensus 86 ~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~--~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 86 NGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp TTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS--SCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC--CCcceeEeecCCCceEEEEecCccccccc
Confidence 886 56666 689999999999999 999999999999999977543 33445567789999999999984
Q ss_pred ------CCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEE
Q psy14906 306 ------SSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAA 379 (583)
Q Consensus 306 ------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (583)
++..+++++.||.|++||++++......
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~---------------------------------------------- 196 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------------------------------------------- 196 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEE----------------------------------------------
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCccccee----------------------------------------------
Confidence 5889999999999999999875322111
Q ss_pred EecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC---CcEEEEEecCceEEEEEcccCccccccCCCCCC
Q psy14906 380 IHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC---GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQP 456 (583)
Q Consensus 380 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 456 (583)
......|...+.+++|+|+ ++++++++.||.|++||+.++............
T Consensus 197 -------------------------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 251 (753)
T 3jro_A 197 -------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE 251 (753)
T ss_dssp -------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSS
T ss_pred -------------------------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccC
Confidence 0011123367999999999 999999999999999999987532222111125
Q ss_pred CcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 457 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
.|...|++++|+|+++++++++.||.|++|++...
T Consensus 252 ~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 252 KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 78999999999999999999999999999999864
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.6e-33 Score=273.32 Aligned_cols=304 Identities=10% Similarity=0.057 Sum_probs=243.9
Q ss_pred EEeCCCcEEEEE--cCCC--cEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEE--
Q psy14906 126 SVDEESNVKVWD--IKAE--ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLME-- 199 (583)
Q Consensus 126 s~~~dg~i~iwd--~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~-- 199 (583)
+++.++.+.+|. ..++ +.+..+. . ...+.+++|+|++.++++++.++.|++||+.+++.+..
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~-----------~-~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 161 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFK-----------T-GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP 161 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEE-----------C-SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEc-----------C-CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC
Confidence 344556444554 4435 4445543 2 34556899999777888888889999999999988873
Q ss_pred ---EeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEE-EeCCCeEEEE
Q psy14906 200 ---FIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVT-SSPDNTLKLW 275 (583)
Q Consensus 200 ---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~~w 275 (583)
+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+ ..|...+.+++|+|+++++++ ++.|+.|++|
T Consensus 162 ~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 162 PEKYKKKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp CHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 447888999999999998 8999999999999999999888888 678899999999999998854 4479999999
Q ss_pred EccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee--------CCCcEEEEEccccccceeeccchhhhhhhhhhc
Q psy14906 276 IFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA--------GDSTLRIFNTKSETSNKNLGIASANRNNLKRKN 347 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 347 (583)
|++ .++.+..+..+ ..+.+++|+| +++.+++++ .|+.|++||+.+++....+...
T Consensus 240 d~~----~~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~----------- 302 (433)
T 3bws_A 240 DRK----TKLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP----------- 302 (433)
T ss_dssp ETT----TTEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-----------
T ss_pred ECC----CCcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-----------
Confidence 765 45666666654 4589999997 788888887 5889999999876543322100
Q ss_pred chhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEE
Q psy14906 348 RLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFV 427 (583)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 427 (583)
..+.+++|+|+++.+
T Consensus 303 -----------------------------------------------------------------~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 303 -----------------------------------------------------------------GNKRHIVSGNTENKI 317 (433)
T ss_dssp -----------------------------------------------------------------ECEEEEEECSSTTEE
T ss_pred -----------------------------------------------------------------CCcceEEECCCCCEE
Confidence 347789999999755
Q ss_pred -EEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec---------------CCcEEEEEccCC
Q psy14906 428 -LIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN---------------DQTVKVWHFKQT 491 (583)
Q Consensus 428 -~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---------------dg~i~iwd~~~~ 491 (583)
++++.++.|++||+.+++....+ .+...+.+++|+|+++++++++. ||.|++||+.++
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSI------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred EEEecCCCEEEEEECCCCcEEEEe------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 55688999999999988887776 46778999999999998888776 579999999988
Q ss_pred CCCceEEeeccCCeeeEEeccCCcEEEEEeC-CceEEEEEccc
Q psy14906 492 GKPPLRSIKLDNGISFFRTHQESSMLAVCLD-DFTVNIIDIDT 533 (583)
Q Consensus 492 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~ 533 (583)
+.+..+.....+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 392 --~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 392 --TVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp --EEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred --cEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 88888888888999999999999998875 99999999863
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-33 Score=273.13 Aligned_cols=268 Identities=15% Similarity=0.122 Sum_probs=205.2
Q ss_pred cCCcceEEEeeCCCCCEE-EEEecCCeEEEEEcc--CCceeEEEe--ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q psy14906 160 RWNSCVNVLEPSPVVDII-GVGLSNKKIILHNIL--TDESLMEFI--QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL 234 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 234 (583)
.|...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|+++ +|++++.+|.+++|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT-TVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-EEEEEeCCCcEEEEec
Confidence 456689999999999996 889999999999999 888888886 5668999999999998 8999999999999999
Q ss_pred CCCeehh----hhhhccccceEEEEEecC---CCEEEEEeCCCeEEEEEccCCCCCceeeEE-eccCCCCCeeEEEeeCC
Q psy14906 235 EDRQVEN----QIKKAHRKVVTGAHFLYN---EPLLVTSSPDNTLKLWIFDKADGNGRLLRI-REGHSAPPNYIQFYGNS 306 (583)
Q Consensus 235 ~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~ 306 (583)
.+++... .+ .+|...|.+++|+|+ +++|++++.|+.|++||+. ....+.. +.+|...|.+++|+ +
T Consensus 179 ~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~----~~~~~~~~~~~h~~~v~~~~~s--d 251 (450)
T 2vdu_B 179 NSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP----QCFIVDKWLFGHKHFVSSICCG--K 251 (450)
T ss_dssp TSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES----CTTCEEEECCCCSSCEEEEEEC--S
T ss_pred CCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC----CCceeeeeecCCCCceEEEEEC--C
Confidence 8877554 66 789999999999999 9999999999999999875 3444555 66899999999998 7
Q ss_pred CCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCce
Q psy14906 307 SDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNK 386 (583)
Q Consensus 307 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (583)
+++|++++.|+.|++||+.+++....+........... ....++.. +.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~--------------------- 299 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLN----------DQHLAPPR-FQ--------------------- 299 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCC----------TTSBC---------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhh----------hccccccc-cc---------------------
Confidence 99999999999999999999887766533211100000 00000000 00
Q ss_pred EEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe-cCceEEEEEc--ccC---ccccccCCCCCCCccc
Q psy14906 387 VSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY-SSGHVDRFNI--QSG---AHRGSYGHDNQPGHVG 460 (583)
Q Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~h~~ 460 (583)
. .........+..++++|+++++++++ .++.|++|++ .++ .....+ ..| .
T Consensus 300 -----------------~-~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~-----~~~-~ 355 (450)
T 2vdu_B 300 -----------------N-ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII-----TFP-Y 355 (450)
T ss_dssp -----------------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE-----ECS-S
T ss_pred -----------------c-cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe-----ccC-C
Confidence 0 00001125688999999999999998 8999999999 555 444555 456 8
Q ss_pred CeeEEEEeCCCcEEEEeec------CCcEEEEEccCC
Q psy14906 461 GVRGVVSDNLNQIVISGGN------DQTVKVWHFKQT 491 (583)
Q Consensus 461 ~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~ 491 (583)
.|.+++|+|++.+++.++. +..|.+|.+...
T Consensus 356 ~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 356 NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 8999999996544444443 456899988654
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=5.9e-33 Score=274.60 Aligned_cols=331 Identities=10% Similarity=0.028 Sum_probs=259.5
Q ss_pred eeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC--CCCeehhhhhhc
Q psy14906 169 EPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL--EDRQVENQIKKA 246 (583)
Q Consensus 169 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~ 246 (583)
+|+|++.++++++.+++|.+||..+++.+.++..+.. +..++|+|||+ +|++++.|+.|++||+ .+++.+.++ .
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~~~~~~i-~- 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEI-K- 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEE-E-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCC-EEEEECCCCeEEEEECcCCCCcEEEEE-e-
Confidence 4899999999999999999999999999999984423 89999999999 8899999999999999 888888887 3
Q ss_pred cccceEEEEEec----CCCEEEEEeC-CCeEEEEEccCCCCCceeeEEecc----------CC-CCCeeEEEeeCCCCEE
Q psy14906 247 HRKVVTGAHFLY----NEPLLVTSSP-DNTLKLWIFDKADGNGRLLRIREG----------HS-APPNYIQFYGNSSDNI 310 (583)
Q Consensus 247 ~~~~v~~~~~~~----~~~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l 310 (583)
+...+..++|+| +|+++++++. +++|.+||.. ..+++..+.. |. ..+..+.++|..+.++
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~----t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE----TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT----TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc----ccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 456789999999 9999999884 8999999654 4555555543 22 2678899998556667
Q ss_pred EEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEe
Q psy14906 311 LSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLW 390 (583)
Q Consensus 311 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 390 (583)
++...++.|.+||+.+.+...... .
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~-------------------------------------------------------i 320 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTS-------------------------------------------------------I 320 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEE-------------------------------------------------------E
T ss_pred EEECCCCeEEEEEecCCCcceeEE-------------------------------------------------------e
Confidence 777889999999987754322100 0
Q ss_pred ecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe-cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC
Q psy14906 391 SFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY-SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN 469 (583)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 469 (583)
. ....+..+.|+|+|++++++. .++.|.+||..++++...+.... ..|.+....+ ++|
T Consensus 321 ~-------------------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~-~ph~g~g~~~-~~p 379 (543)
T 1nir_A 321 G-------------------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK-TPHPGRGANF-VHP 379 (543)
T ss_dssp E-------------------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SBCCTTCEEE-EET
T ss_pred c-------------------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC-CCCCCCCccc-CCC
Confidence 0 013577899999999877654 58899999999999887763210 2365544444 577
Q ss_pred C-CcEEEEee-cCCcEEEEEccCCC-----CCceEEeecc-CCeeeEEeccCCcEEEEEe-------CCceEEEEEcccc
Q psy14906 470 L-NQIVISGG-NDQTVKVWHFKQTG-----KPPLRSIKLD-NGISFFRTHQESSMLAVCL-------DDFTVNIIDIDTC 534 (583)
Q Consensus 470 ~-~~~l~s~~-~dg~i~iwd~~~~~-----~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~ 534 (583)
+ +..++++. .|++|.+||+.+.. .++++.+..+ ..+..++++|+|++|++++ .+++|.+||++++
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 7 66677765 68999999998821 1778888765 5678999999999999987 2679999999998
Q ss_pred ceE-Eee--------cccccceeeEEecCCCcEEEEEe-----CCCeEEEEeCCCcccccccC
Q psy14906 535 TII-RKL--------SGHMGQLTDADFSPDSRWLITAS-----MDCTIRVWDIPSSQLIDCFQ 583 (583)
Q Consensus 535 ~~~-~~~--------~~h~~~v~~l~~s~d~~~l~s~~-----~d~~i~vw~~~~~~~~~~~~ 583 (583)
+.. ..+ ..+...+..++|+|||+.|+.+. .|+.|.|||..|++++++++
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 876 443 35678899999999999988663 47999999999999988764
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=7.1e-34 Score=271.98 Aligned_cols=286 Identities=9% Similarity=-0.032 Sum_probs=185.9
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeE-----EEeccCCCeEEEEEec--------CCCCEEEEEcCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLM-----EFIQTWGPVTALSFRT--------DGPPMMVSGSNT 226 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~~l~s~~~d 226 (583)
.|........+++++.+||+++.|++|+|||.++++... .+.+|.+.|++++|+| |++ +|++++.|
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D 165 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDD 165 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETT
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECC
Confidence 455566667778889999999999999999999886543 3568999999999998 777 99999999
Q ss_pred CcEEEEeCCCCeehhhhhhccccceEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeC
Q psy14906 227 GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEP-LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305 (583)
Q Consensus 227 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 305 (583)
++|+|||+.++..+..+ ..|...+.+++|+|++. +|++++.|++|++||+... +.......+........+.+
T Consensus 166 ~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~----~~~~~~~~~~~~~~~~~~s~- 239 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN----LSAEENSQTELVKNPWLLTL- 239 (393)
T ss_dssp SEEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC----C----------CSCCCSEEE-
T ss_pred CeEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC----cccccccccCCcccceEEec-
Confidence 99999999988877777 68999999999999874 8999999999999977532 22222222211111111110
Q ss_pred CCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCc
Q psy14906 306 SSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKN 385 (583)
Q Consensus 306 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (583)
..........
T Consensus 240 --------~~~~~~~~~~-------------------------------------------------------------- 249 (393)
T 4gq1_A 240 --------NTLPLVNTCH-------------------------------------------------------------- 249 (393)
T ss_dssp --------ESGGGC------------------------------------------------------------------
T ss_pred --------ccccceeeee--------------------------------------------------------------
Confidence 0000000000
Q ss_pred eEEEeecCcccccceeeecccccccCCCCceEEEEc-cCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeE
Q psy14906 386 KVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYIT-HCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRG 464 (583)
Q Consensus 386 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~ 464 (583)
...+...+.++.|+ |+++.+++++.|+.+++||+..++....+ ..|...+..
T Consensus 250 ----------------------~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l-----~~~~~~~~~ 302 (393)
T 4gq1_A 250 ----------------------SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI-----SDSTMKLGP 302 (393)
T ss_dssp ------------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------
T ss_pred ----------------------cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE-----eeecCcccc
Confidence 00112567788886 79999999999999999999988877776 677777777
Q ss_pred EEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEecc-CCcEEEEEeCCceEEEEEccccceEEeeccc
Q psy14906 465 VVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ-ESSMLAVCLDDFTVNIIDIDTCTIIRKLSGH 543 (583)
Q Consensus 465 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h 543 (583)
+.+.|+.+.+.... ..+..+.+.+ ++.++++|+.||.|++||+.+++.+..+.+|
T Consensus 303 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~ 358 (393)
T 4gq1_A 303 KNLLPNVQGISLFP------------------------SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL 358 (393)
T ss_dssp -CCSCSEEEECSSC------------------------CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC
T ss_pred EEEccccccccccC------------------------cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 77777654332111 1112222222 4557788889999999999999998888889
Q ss_pred ccceeeEEecCCCcEEEEEeCCCeEEEEeCC
Q psy14906 544 MGQLTDADFSPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 544 ~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
..+|.+++|+|||++||+++.|| +.+|++.
T Consensus 359 ~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 359 GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999999999999999776 6666653
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.5e-32 Score=244.57 Aligned_cols=283 Identities=13% Similarity=0.041 Sum_probs=197.0
Q ss_pred ceEEEeeCCCCC---EEEEEecCCeEEEEEccCC---ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q psy14906 164 CVNVLEPSPVVD---IIGVGLSNKKIILHNILTD---ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR 237 (583)
Q Consensus 164 ~i~~~~~s~~~~---~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 237 (583)
.+.++.|-..+- -++++++ ..|++|+..++ +.+.++.+|+.+|..+.|.||...++..+-.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 345555544332 4555555 58999999998 8999999999999999999987645544421
Q ss_pred eehhhhhhccccceEEEEEecC----CCEEEEEeCCCeEEEEEccCCCCCceeeEE-eccCCCCCeeEEEeeCCCCEEEE
Q psy14906 238 QVENQIKKAHRKVVTGAHFLYN----EPLLVTSSPDNTLKLWIFDKADGNGRLLRI-REGHSAPPNYIQFYGNSSDNILS 312 (583)
Q Consensus 238 ~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~ 312 (583)
.-+...|.+++|+|| ++++++++. .+++|++. .++.+.. ..+
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~----~g~lv~ss~~g-------------------- 154 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLT----KRRLVSSSGTL-------------------- 154 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEE--EEEEEEET----TTEEEEEESSS--------------------
T ss_pred -------cccccceEEEEECCCccccccEEEeCCC--eEEEEecC----CCcEEEecccC--------------------
Confidence 125678899999999 999999874 47788542 2233222 223
Q ss_pred eeCCCcEEEEEccc-cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEee
Q psy14906 313 AAGDSTLRIFNTKS-ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWS 391 (583)
Q Consensus 313 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 391 (583)
.|+.|++|++.. ++....+
T Consensus 155 --~d~~V~~~~~s~dG~~~~s~---------------------------------------------------------- 174 (356)
T 2w18_A 155 --SDQQVEVMTFAEDGGGKENQ---------------------------------------------------------- 174 (356)
T ss_dssp --TTCEEEEEEECTTSCEEEEE----------------------------------------------------------
T ss_pred --CCCcEEEEEECCCCceeeee----------------------------------------------------------
Confidence 355666666532 2221111
Q ss_pred cCcccccceeeecccccccCCCCceEEEEcc---CCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEe
Q psy14906 392 FYKSKMDDMFLVPERCKQAKQSKPTCVYITH---CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSD 468 (583)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s 468 (583)
..+...++.++|+| ++.+|++++.|++|++||+.+++.+.++... ..+...+.+++|+
T Consensus 175 -----------------~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~--~~~v~~v~~vafS 235 (356)
T 2w18_A 175 -----------------FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID--DSYQASVCHKAYS 235 (356)
T ss_dssp -----------------EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC--C---CCCEEEEEE
T ss_pred -----------------ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC--CcceeeeEEEEEC
Confidence 01115677888888 7799999999999999999999999988311 1123478888999
Q ss_pred CCCcEE------------EEeecCCcEEEEEccCCCCCceEEee----ccCCeeeEEeccCCcEEEEEeCCceEEEEEcc
Q psy14906 469 NLNQIV------------ISGGNDQTVKVWHFKQTGKPPLRSIK----LDNGISFFRTHQESSMLAVCLDDFTVNIIDID 532 (583)
Q Consensus 469 ~~~~~l------------~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 532 (583)
|+++++ ++|+.|++|++||..++ +.+..+. .......+..+.++.++|+++.|++|+|||+.
T Consensus 236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg--k~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~ 313 (356)
T 2w18_A 236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT--LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLL 313 (356)
T ss_dssp ETTEEEEEEC------------CCEEEEEEETTTT--EEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC--EEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECC
Confidence 999876 56888999999999887 6655442 11111123334447889999999999999999
Q ss_pred ccceEEeeccccccee-eEEecCCCcEEEEEeCCCeEEEEeC
Q psy14906 533 TCTIIRKLSGHMGQLT-DADFSPDSRWLITASMDCTIRVWDI 573 (583)
Q Consensus 533 ~~~~~~~~~~h~~~v~-~l~~s~d~~~l~s~~~d~~i~vw~~ 573 (583)
+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 314 tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999988766 5899999999999999999999996
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=261.41 Aligned_cols=278 Identities=11% Similarity=0.055 Sum_probs=217.4
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCcee
Q psy14906 118 LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESL 197 (583)
Q Consensus 118 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 197 (583)
.+++++|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-------------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~---- 104 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT-------------TPNPRTGGEHPA---IISRGPCNRLLLLYPGN---- 104 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE-------------EECCCTTCCCCS---EEEECSTTEEEEEETTT----
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe-------------cCCceeeeeCCc---eEEecCCCeEEEEEccC----
Confidence 5788899999999999999999998887775 356777888888 88999999999998753
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEec--CCCEEEEEeCCCeEEEE
Q psy14906 198 MEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLY--NEPLLVTSSPDNTLKLW 275 (583)
Q Consensus 198 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~w 275 (583)
.+.+||+.+++.+..+..+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 105 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w 154 (343)
T 3lrv_A 105 ------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154 (343)
T ss_dssp ------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE
T ss_pred ------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence 4667888887766666457888999999999 99999999999999999
Q ss_pred EccCCCCCceeeEEe-ccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccc-eeeccchhhhhhhhhhcchhccc
Q psy14906 276 IFDKADGNGRLLRIR-EGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSN-KNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
|++ .++.+... ..|...+.+++|+| ++.+|++|+.||.|++||+++++.. ..+.
T Consensus 155 d~~----~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~------------------- 210 (343)
T 3lrv_A 155 SYE----DDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFP------------------- 210 (343)
T ss_dssp ESS----SSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECC-------------------
T ss_pred ECC----CCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------
Confidence 775 33444444 34566899999998 8999999999999999999887654 2221
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS 433 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 433 (583)
..|...|++++|+|++.+|++++.
T Consensus 211 -------------------------------------------------------~~h~~~v~~l~fs~~g~~l~s~~~- 234 (343)
T 3lrv_A 211 -------------------------------------------------------VDEEAKIKEVKFADNGYWMVVECD- 234 (343)
T ss_dssp -------------------------------------------------------CCTTSCEEEEEECTTSSEEEEEES-
T ss_pred -------------------------------------------------------ccCCCCEEEEEEeCCCCEEEEEeC-
Confidence 112368999999999999999994
Q ss_pred ceEEEEEcccCccccccCCCCCCCcccCee--EEEEeCCCcEEEEeec-CCcEEEEEccCCCCCceEEeeccCCeeeEEe
Q psy14906 434 GHVDRFNIQSGAHRGSYGHDNQPGHVGGVR--GVVSDNLNQIVISGGN-DQTVKVWHFKQTGKPPLRSIKLDNGISFFRT 510 (583)
Q Consensus 434 g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 510 (583)
+.|++||+++++....+... ..|...+. +++|+|++++|++++. |+.+++|++... ...... .++..++|
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~--~~~~~~---~~~~~~~~ 307 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTY--TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK--TKNWTK---DEESALCL 307 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCC--BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT--TCSEEE---EEEEECCC
T ss_pred CeEEEEEcCCCCcceeeccc--ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc--ccceEe---cCceeEec
Confidence 59999999998876665321 22444444 6999999999999988 999999999776 332222 56788889
Q ss_pred cc---CCcEEEEEeCCceEEEEEcc
Q psy14906 511 HQ---ESSMLAVCLDDFTVNIIDID 532 (583)
Q Consensus 511 s~---~~~~l~~~~~dg~i~i~d~~ 532 (583)
++ +.+.+++++.|+.+.++-..
T Consensus 308 ~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 308 QSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ----CCCCEEEEEEETTEEEEEEEC
T ss_pred CccccccceeEEEecCCceEEEEec
Confidence 98 88899999999998887543
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.4e-33 Score=268.35 Aligned_cols=335 Identities=9% Similarity=0.071 Sum_probs=214.2
Q ss_pred cCcccEEEEE---eCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEeeCeEEEEEcCCeEEEEeccceeeee
Q psy14906 30 NHLPVVARFI---RRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSDFFHIYTSANNIIYAWRRGIDIVGT 106 (583)
Q Consensus 30 ~~~~~~~~~~---p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~ 106 (583)
+..|..+.|. |+.. .+++++.++.|.+|+...... ..........+ ..+..+.......|+... ...
T Consensus 15 ~~~p~~~~w~~~~~~~~-~l~a~g~~~~i~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~ 84 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCS-NLLAIGHDTGITIYCASEEQT---PGSTGLTLQEL----FTIQTGLPTLHLSFSSSC--SYS 84 (393)
T ss_dssp TCCEEEEEECTTSGGGT-TEEEEEESSEEEEEEEEECCS---SSCCSEEEEEE----EEEECSSCEEEEEECTTC--EEE
T ss_pred CCCCeEEEEeCCCCCCC-CEEEEECCCCEEEEECCCCCc---ccccccceeee----EEEecCCCeeeEeecCCc--ccc
Confidence 4556677774 3333 357777899999997532110 00000000000 000001111222333222 122
Q ss_pred ecccCccEEE--EccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCC--------CCCE
Q psy14906 107 YKGHTSPVHL--ILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSP--------VVDI 176 (583)
Q Consensus 107 ~~~h~~~v~~--is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--------~~~~ 176 (583)
...|...+.. .++++.+||+++.|++|+|||.++++......+... .+|.+.|.+++|+| |+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~------~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGK------SGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTT------TSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeeccc------CCCCCceEEEEEccccccccCCCCCE
Confidence 2334433333 378889999999999999999999876543321111 18999999999998 8999
Q ss_pred EEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhh-------------
Q psy14906 177 IGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI------------- 243 (583)
Q Consensus 177 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------- 243 (583)
||+|+.|++|+|||+.++.++..+..|...|.+++|+|++..+|++++.|++|++||+.+++.....
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred EEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 9999999999999999998888888888999999999998658999999999999999877543322
Q ss_pred -----------hhccccceEEEEEe-cCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEE
Q psy14906 244 -----------KKAHRKVVTGAHFL-YNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNIL 311 (583)
Q Consensus 244 -----------~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 311 (583)
..+|...+.++.|+ ++++.|++++.|+.+++||+. ..+....+..|...+..+.+.| +...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 313 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKNLLP-NVQGIS 313 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSC-SEEEEC
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEEEcc-cccccc
Confidence 13577788999987 799999999999999999765 2334444555555555555543 211110
Q ss_pred EeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEee
Q psy14906 312 SAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWS 391 (583)
Q Consensus 312 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 391 (583)
..
T Consensus 314 ~~------------------------------------------------------------------------------ 315 (393)
T 4gq1_A 314 LF------------------------------------------------------------------------------ 315 (393)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cCcccccceeeecccccccCCCCceEEEEcc--CCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC
Q psy14906 392 FYKSKMDDMFLVPERCKQAKQSKPTCVYITH--CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN 469 (583)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 469 (583)
.......++| ++.++++|+.||.|++||+.+++....+ ..|..+|++++|+|
T Consensus 316 ---------------------~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----~~~~~~V~svafsp 369 (393)
T 4gq1_A 316 ---------------------PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-----IQLGMPIVDFCWHQ 369 (393)
T ss_dssp ---------------------CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----EECSSCEEEEEECT
T ss_pred ---------------------CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----cCCCCcEEEEEEcC
Confidence 1111222333 4556778889999999999999887776 68889999999999
Q ss_pred CCcEEEEeecCCcEEEEEccC
Q psy14906 470 LNQIVISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 470 ~~~~l~s~~~dg~i~iwd~~~ 490 (583)
||++||+++.+| +.+|.+..
T Consensus 370 dG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 370 DGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp TSSEEEEEESSE-EEEEEEGG
T ss_pred CCCEEEEEeCCC-eEEEEEeC
Confidence 999999998766 66666643
No 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.8e-32 Score=265.91 Aligned_cols=249 Identities=15% Similarity=0.237 Sum_probs=211.6
Q ss_pred eecCCCCCCeEEEEeeC---e-EEEEEcCCeEEEEecc-----------ceeeeeecccCccEEEE--ccCCC-EEEEEe
Q psy14906 67 SVSPQHEDDITCLSSDF---F-HIYTSANNIIYAWRRG-----------IDIVGTYKGHTSPVHLI--LPFGP-HLISVD 128 (583)
Q Consensus 67 ~~~~~h~~~v~~~~~~~---~-~~~~~~~~~i~vw~~~-----------~~~~~~~~~h~~~v~~i--s~~~~-~l~s~~ 128 (583)
....+|.+.|+++++.+ . +++++.+|.|++|++. ...+..+.+|...|.++ +|+++ +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 34557999999999843 3 5556689999999975 36677888999999987 88888 999999
Q ss_pred CCCcEEEEEcCCCcE-------EEEeeccCCceEEecccCCcceEEEeeCC-CCCEEEEEecCCeEEEEEccCC---cee
Q psy14906 129 EESNVKVWDIKAEET-------YLELSFDNDTFKIMGKRWNSCVNVLEPSP-VVDIIGVGLSNKKIILHNILTD---ESL 197 (583)
Q Consensus 129 ~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~---~~~ 197 (583)
.||.|++||+.++.. ...+. .|...|.+++|+| ++.+|++++.|+.|++||++++ +.+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFT-----------GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEEC-----------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCeEEEEeCCCCCCCCceeccceeec-----------CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence 999999999987422 23333 7899999999999 7889999999999999999987 577
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC-CeehhhhhhccccceEEEEEecCCC-EEEEEeCCCeEEEE
Q psy14906 198 MEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLED-RQVENQIKKAHRKVVTGAHFLYNEP-LLVTSSPDNTLKLW 275 (583)
Q Consensus 198 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~w 275 (583)
..+..|...|++++|+|++++++++|+.||.|++||+++ ++.+..+ .+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 888899999999999999987899999999999999997 4566677 78999999999999985 69999999999999
Q ss_pred EccCCCC----------CceeeEEeccCCCCCeeEEEeeCCCC-EEEEeeCCCcEEEEEccccc
Q psy14906 276 IFDKADG----------NGRLLRIREGHSAPPNYIQFYGNSSD-NILSAAGDSTLRIFNTKSET 328 (583)
Q Consensus 276 ~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 328 (583)
++..... ....+..+.+|...|.+++|+| ++. ++++++.||.|++|++....
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECHHH
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-CCCCEEEEEECCCCEEEeEccccc
Confidence 8865221 1367778889999999999998 566 89999999999999997654
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.7e-32 Score=242.92 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=204.1
Q ss_pred EEEEE-eCCCceEEEEeeCCeEEEEecCCc---EEEeecCCCCCCeEEEEeeC---eEEEEEcCC-eE-EEEe----cc-
Q psy14906 35 VARFI-RRRKETLFVTCVGKAFHVYGCNHF---KLLSVSPQHEDDITCLSSDF---FHIYTSANN-II-YAWR----RG- 100 (583)
Q Consensus 35 ~~~~~-p~~~~~~i~~~~~~~i~v~d~~~~---~~~~~~~~h~~~v~~~~~~~---~~~~~~~~~-~i-~vw~----~~- 100 (583)
.+.|- ++.++..|+++....|.+|+..++ ++++++.+|..+|..+++-+ .++..+-.+ .+ .++- .+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~ 123 (356)
T 2w18_A 44 AMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDD 123 (356)
T ss_dssp EEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC----
T ss_pred eeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCc
Confidence 34443 355777888889999999999998 99999999999999999844 344443322 11 1221 22
Q ss_pred ---ceeeeeecccCccEEEEccCCCEEEEEe--CCCcEEEEEc-CCCcEEEEeeccCCceEEecccCCcceEEEeeCC--
Q psy14906 101 ---IDIVGTYKGHTSPVHLILPFGPHLISVD--EESNVKVWDI-KAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSP-- 172 (583)
Q Consensus 101 ---~~~~~~~~~h~~~v~~is~~~~~l~s~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-- 172 (583)
++ ...-.+|...|..+ ++|+.+.+++ .|+.|++|++ .+|+.+..+. .|...++.++|++
T Consensus 124 ~~~~~-~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-----------~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 124 ESEKQ-VLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-----------LMPPEETILTFAEVQ 190 (356)
T ss_dssp --CCE-EEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-----------ECCCSSCEEEEEEEE
T ss_pred ccccc-EEEeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeec-----------cCCCceeeEEeeccC
Confidence 11 11224566666666 5666666644 5999999999 5588888887 8899999999999
Q ss_pred -CCCEEEEEecCCeEEEEEccCCceeEEEeccC---CCeEEEEEecCCCCEE------------EEEcCCCcEEEEeCCC
Q psy14906 173 -VVDIIGVGLSNKKIILHNILTDESLMEFIQTW---GPVTALSFRTDGPPMM------------VSGSNTGHLTVWNLED 236 (583)
Q Consensus 173 -~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~s~~~dg~i~vwd~~~ 236 (583)
++.+||+++.|++|+|||+++++.+.++.+|. ..+.+++|+|+|. ++ ++|+.|++|++||..+
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC------------CCEEEEEEETTT
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 78999999999999999999999999998653 3677889999998 54 6688899999999999
Q ss_pred Ceehhhh----hhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCe-eEEEeeCCCCEEE
Q psy14906 237 RQVENQI----KKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPN-YIQFYGNSSDNIL 311 (583)
Q Consensus 237 ~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~ 311 (583)
++.+..+ ..+|...+.+..++ +.++++++.|++|+|||+. .++.+.++.+|...+. .++|+| |+++|+
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~----tGk~l~tL~gH~~~vvs~vafSP-DG~~La 342 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL----LGQCTALLPPVSDQHWSFVKWSG-TDSHLL 342 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT----TCSEEEEECCC--CCCCEEEECS-SSSEEE
T ss_pred CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC----CCcEEEEecCCCCCeEEEEEECC-CCCEEE
Confidence 9876543 24676665544444 8899999999999999775 6788899999988766 589998 899999
Q ss_pred EeeCCCcEEEEEc
Q psy14906 312 SAAGDSTLRIFNT 324 (583)
Q Consensus 312 ~~~~dg~i~iwd~ 324 (583)
+|+.|++|++||+
T Consensus 343 SGS~D~TIklWd~ 355 (356)
T 2w18_A 343 AGQKDGNIFVYHY 355 (356)
T ss_dssp EECTTSCEEEEEE
T ss_pred EEECCCcEEEecC
Confidence 9999999999995
No 129
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=257.52 Aligned_cols=258 Identities=10% Similarity=0.066 Sum_probs=199.5
Q ss_pred ceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEeeCeEEEEEcCCeEEEEeccce----------eeeeec-ccCc
Q psy14906 44 ETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSDFFHIYTSANNIIYAWRRGID----------IVGTYK-GHTS 112 (583)
Q Consensus 44 ~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~i~vw~~~~~----------~~~~~~-~h~~ 112 (583)
..+++++.|+.|++||+++++.+..+. ...|.++.+.+.+++++.|++|++|+..+. .++.+. +|.+
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN 126 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC
Confidence 456667799999999999988877665 456777777667889999999999986532 233333 7778
Q ss_pred cEEEE--cc--CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEE
Q psy14906 113 PVHLI--LP--FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIIL 188 (583)
Q Consensus 113 ~v~~i--s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 188 (583)
+|.++ +| ++++|++++.||+|++||+.+++.+..... .+...|.+++|+|++.+|++|+.||.|++
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----------~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA----------KSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC----------CSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec----------CCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 99998 88 999999999999999999999988666541 45668999999999999999999999999
Q ss_pred EEccCCcee-EEEec-cCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhc---cccceE--EEEEecCCC
Q psy14906 189 HNILTDESL-MEFIQ-TWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKA---HRKVVT--GAHFLYNEP 261 (583)
Q Consensus 189 w~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~ 261 (583)
||+++++.+ ..+.. |.++|++++|+|++. +|++++ ++.|++||+++++....+ .. |...+. +++|+|+++
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAY-PTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSS-CCCBC-----CCEEEEECTTSS
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceee-cccccccccccceEEEECCCCC
Confidence 999999988 78888 999999999999998 888888 559999999988766555 22 333443 699999999
Q ss_pred EEEEEeC-CCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEee--CCCCEEEEeeCCCcEEEEEc
Q psy14906 262 LLVTSSP-DNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYG--NSSDNILSAAGDSTLRIFNT 324 (583)
Q Consensus 262 ~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~ 324 (583)
+|++++. |+.+++|+++........ .++..+.|.+ .+...+++++.||.+.++-.
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred EEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 9999988 999999988644322222 2334455543 14566777777777776643
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=2.7e-31 Score=262.67 Aligned_cols=335 Identities=9% Similarity=0.082 Sum_probs=259.2
Q ss_pred ccEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEc
Q psy14906 112 SPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNI 191 (583)
Q Consensus 112 ~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~ 191 (583)
.+...++|++..+++.+.|++|.+||..+++.+.++. .+.. +..++|+|||++|++++.++.|.+||+
T Consensus 140 ~~~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~-----------~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 140 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-----------TGYA-VHISRMSASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp SCCSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE-----------CSTT-EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred ccccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe-----------cCcc-cceEEECCCCCEEEEECCCCeEEEEEC
Confidence 3444578999999999999999999999999998886 2223 889999999999999999999999999
Q ss_pred --cCCceeEEEeccCCCeEEEEEec----CCCCEEEEEc-CCCcEEEEeCCCCeehhhhhh-c--------ccc-ceEEE
Q psy14906 192 --LTDESLMEFIQTWGPVTALSFRT----DGPPMMVSGS-NTGHLTVWNLEDRQVENQIKK-A--------HRK-VVTGA 254 (583)
Q Consensus 192 --~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~-~--------~~~-~v~~~ 254 (583)
.+++.+.++..+ ..+..++|+| ||+ ++++++ .+++|.+||..+++++..+.. + |.. .+.++
T Consensus 208 ~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 208 WAKEPTKVAEIKIG-IEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp TSSSCEEEEEEECC-SEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred cCCCCcEEEEEecC-CCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEE
Confidence 889998888855 6789999999 999 677766 589999999999988877621 1 223 78899
Q ss_pred EEecCCC-EEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee-CCCcEEEEEcccccccee
Q psy14906 255 HFLYNEP-LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA-GDSTLRIFNTKSETSNKN 332 (583)
Q Consensus 255 ~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 332 (583)
.++|++. ++++...++.|.+||+... ....+..+ .+...+..+.|+| +++++++++ .+++|.+||+.++++...
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~--~~l~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDI--DNLTVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTS--SSCEEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCC--CcceeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 9999776 4566677899999976532 11122233 3566788999998 788776554 588999999998876554
Q ss_pred eccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCC
Q psy14906 333 LGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQ 412 (583)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (583)
+.... ..|.
T Consensus 362 i~~g~-----------------------------------------------------------------------~ph~ 370 (543)
T 1nir_A 362 VDVGK-----------------------------------------------------------------------TPHP 370 (543)
T ss_dssp EECSS-----------------------------------------------------------------------SBCC
T ss_pred eccCC-----------------------------------------------------------------------CCCC
Confidence 32100 0000
Q ss_pred CCceEEEEccC-CcEEEEEe-cCceEEEEEccc-------CccccccCCCCCCCcccCeeEEEEeCCCcEEEEee-----
Q psy14906 413 SKPTCVYITHC-GNFVLIGY-SSGHVDRFNIQS-------GAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG----- 478 (583)
Q Consensus 413 ~~i~~~~~s~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----- 478 (583)
.....+ ++|+ +..++++. .+++|.+||+.+ .+.+..+ ..|...+..++++|++++|++++
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-----~~~g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-----QGQGGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-----ECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-----EcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence 122232 4677 55566664 579999999988 7777777 67888899999999999999987
Q ss_pred --cCCcEEEEEccCCCCCce-EEe---------eccCCeeeEEeccCCcEEEEEe-----CCceEEEEEccccceEEeec
Q psy14906 479 --NDQTVKVWHFKQTGKPPL-RSI---------KLDNGISFFRTHQESSMLAVCL-----DDFTVNIIDIDTCTIIRKLS 541 (583)
Q Consensus 479 --~dg~i~iwd~~~~~~~~~-~~~---------~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~ 541 (583)
.+++|.+||+.+. +.. ..+ .+...+..++|+|+|+.|+++. .++.|.|||.++++++.+++
T Consensus 445 ~~~~~~v~v~d~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 445 ARISQSVAVFDLKNL--DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HHHHTCEEEEETTCT--TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cccCceEEEEECCCC--CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 3779999999988 555 443 2346799999999999888763 47999999999999999888
Q ss_pred cc
Q psy14906 542 GH 543 (583)
Q Consensus 542 ~h 543 (583)
.+
T Consensus 523 ~~ 524 (543)
T 1nir_A 523 DP 524 (543)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=4.9e-30 Score=246.57 Aligned_cols=299 Identities=11% Similarity=0.035 Sum_probs=229.6
Q ss_pred cceEEEeeCCCCC-EEEEEe----cCC----eEEEEEc--cCCcee--EEEeccCCCeEEEEEecC--------------
Q psy14906 163 SCVNVLEPSPVVD-IIGVGL----SNK----KIILHNI--LTDESL--MEFIQTWGPVTALSFRTD-------------- 215 (583)
Q Consensus 163 ~~i~~~~~s~~~~-~l~~~~----~d~----~i~iw~~--~~~~~~--~~~~~~~~~v~~~~~~~~-------------- 215 (583)
..+...+|.+.|. ++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677888888875 555775 467 8999999 889887 457888888888877751
Q ss_pred CCCEEEEEcCC------CcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCC---eEEEEEccCCCCCcee
Q psy14906 216 GPPMMVSGSNT------GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDN---TLKLWIFDKADGNGRL 286 (583)
Q Consensus 216 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~~w~~~~~~~~~~~ 286 (583)
+. .++.++.+ +.|++||+.. .....+ .+|...+.+++|+|+|++|++++.++ .|++||++. ++.
T Consensus 143 ~~-~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t----g~~ 215 (415)
T 2hqs_A 143 RT-RIAYVVQTNGGQFPYELRVSDYDG-YNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN----GAV 215 (415)
T ss_dssp TC-EEEEEEECSSSSCCEEEEEEETTS-CSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT----CCE
T ss_pred CC-EEEEEEecCCCCccceEEEEcCCC-CCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC----CcE
Confidence 44 34444433 7999999974 445666 67899999999999999999999875 999997652 233
Q ss_pred eEEeccCCCCCeeEEEeeCCCCEEE-EeeCCCc--EEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccce
Q psy14906 287 LRIREGHSAPPNYIQFYGNSSDNIL-SAAGDST--LRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQ 363 (583)
Q Consensus 287 ~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (583)
..+..|...+.+++|+| |++.|+ +++.++. |++||+.+++.....
T Consensus 216 -~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~------------------------------ 263 (415)
T 2hqs_A 216 -RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVT------------------------------ 263 (415)
T ss_dssp -EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECC------------------------------
T ss_pred -EEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCc------------------------------
Confidence 34566778899999998 788777 6666554 888998776432110
Q ss_pred eeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec-Cc--eEEEEE
Q psy14906 364 FSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS-SG--HVDRFN 440 (583)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d 440 (583)
.+...+.+++|+|||++|++++. ++ .|++||
T Consensus 264 ----------------------------------------------~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 264 ----------------------------------------------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp ----------------------------------------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ----------------------------------------------CCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 01145789999999999988876 44 688889
Q ss_pred cccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecC---CcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEE
Q psy14906 441 IQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGND---QTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSML 517 (583)
Q Consensus 441 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 517 (583)
+.+++... + ..|...+.+++|+|+|++|++++.+ ..|++||+.++ +.. .+.....+.+++|+|||++|
T Consensus 298 ~~~~~~~~-l-----~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--~~~-~l~~~~~~~~~~~spdg~~l 368 (415)
T 2hqs_A 298 INGGAPQR-I-----TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--GVQ-VLSSTFLDETPSLAPNGTMV 368 (415)
T ss_dssp TTSSCCEE-C-----CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--CEE-ECCCSSSCEEEEECTTSSEE
T ss_pred CCCCCEEE-E-----ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC--CEE-EecCCCCcCCeEEcCCCCEE
Confidence 88876433 3 3567789999999999999988764 58999999987 553 34334489999999999999
Q ss_pred EEEeCCc---eEEEEEccccceEEeecccccceeeEEecCCC
Q psy14906 518 AVCLDDF---TVNIIDIDTCTIIRKLSGHMGQLTDADFSPDS 556 (583)
Q Consensus 518 ~~~~~dg---~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~ 556 (583)
++++.++ .|++||+. ++....+.+|.+.|.+++|+|.-
T Consensus 369 ~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 9988776 89999987 55677888999999999999964
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=2.7e-29 Score=262.11 Aligned_cols=356 Identities=9% Similarity=0.025 Sum_probs=243.6
Q ss_pred CcceEEEeeCCCCCEEEEEec-CC-----eEEEEEccCCceeEEEeccCCC------------------------eEEEE
Q psy14906 162 NSCVNVLEPSPVVDIIGVGLS-NK-----KIILHNILTDESLMEFIQTWGP------------------------VTALS 211 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~------------------------v~~~~ 211 (583)
...+.+++|||||++|++++. ++ .|++||+.+++....+..+... +.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 567999999999999999988 88 8999999999887777655333 78999
Q ss_pred EecCCCCEEEEEcCCCcEEEEeCCCCe--ehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEE
Q psy14906 212 FRTDGPPMMVSGSNTGHLTVWNLEDRQ--VENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRI 289 (583)
Q Consensus 212 ~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 289 (583)
|+|||+ .|++++. +.|++||+.+++ ....+ ..|...+..++|+|||++|++++ ++.|.+|+++ .++....
T Consensus 116 ~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~----~g~~~~~ 187 (741)
T 2ecf_A 116 WSPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLA----SGRQMQL 187 (741)
T ss_dssp ECTTSS-EEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETT----TTEEEEC
T ss_pred ECCCCC-EEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecC----CCCEEEe
Confidence 999999 6777765 899999999873 34445 56788899999999999999987 5689999764 2333333
Q ss_pred eccCCC----------------CCeeEEEeeCCCCEEEEeeCCC-cEEEEEccccccceeeccchhhhhhhhhhcchhcc
Q psy14906 290 REGHSA----------------PPNYIQFYGNSSDNILSAAGDS-TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKM 352 (583)
Q Consensus 290 ~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (583)
...+.. .+..++|+| |+++|++++.|+ .+..|+..........
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~------------------- 247 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTD------------------- 247 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEE-------------------
T ss_pred ccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCccc-------------------
Confidence 332322 257899998 899888887653 3333331100000000
Q ss_pred ccccCCCccceeeeecccccccccEEEEecCCceEEEeecCc-ccccceeeecccccccCCCCceEEEEccCCcEEEEEe
Q psy14906 353 NEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYK-SKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY 431 (583)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 431 (583)
......+... .......+.+||... ......... ..+...+..++| |||++|+++.
T Consensus 248 ~~~~~~~~~g-----------------~~~~~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~-pDg~~l~~~~ 304 (741)
T 2ecf_A 248 VIEQRYPAAG-----------------DANVQVKLGVISPAEQAQTQWIDLG-----KEQDIYLARVNW-RDPQHLSFQR 304 (741)
T ss_dssp EEEEECCBTT-----------------SCCCEEEEEEECSSTTCCCEEECCC-----SCSSEEEEEEEE-EETTEEEEEE
T ss_pred ceEeecCCCC-----------------CCCCeeEEEEEECCCCCceEEecCC-----CCcceEEEEEEe-CCCCEEEEEE
Confidence 0000000000 000112456667655 432111110 122356889999 9999999775
Q ss_pred c-----CceEEEEEcccCccccccCCCCCCCccc----CeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEee-c
Q psy14906 432 S-----SGHVDRFNIQSGAHRGSYGHDNQPGHVG----GVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIK-L 501 (583)
Q Consensus 432 ~-----dg~i~i~d~~~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 501 (583)
. +..|++||+.+++....+ ..+.. .+..++|+|||+++++++.||.++||.++... . ...+. +
T Consensus 305 ~~~~~~~~~i~~~d~~~g~~~~~~-----~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~-~-~~~l~~~ 377 (741)
T 2ecf_A 305 QSRDQKKLDLVEVTLASNQQRVLA-----HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG-K-AAALTHG 377 (741)
T ss_dssp EETTSSEEEEEEEETTTCCEEEEE-----EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS-C-EEESCCS
T ss_pred ecccCCeEEEEEEECCCCceEEEE-----EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC-C-eeeeeec
Confidence 4 678999999998876655 23332 45689999999999999999988898887432 3 44443 3
Q ss_pred cCCeeeE-EeccCCcEEEE-EeCCc--eEEEEEccc-cceEEeecccccceeeEEecCCCcEEEEEeCC----CeEEEEe
Q psy14906 502 DNGISFF-RTHQESSMLAV-CLDDF--TVNIIDIDT-CTIIRKLSGHMGQLTDADFSPDSRWLITASMD----CTIRVWD 572 (583)
Q Consensus 502 ~~~v~~~-~~s~~~~~l~~-~~~dg--~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d----~~i~vw~ 572 (583)
...+..+ .|+|+|+.|+. ++.++ .++||++.. ++....+.. ...+..++|||||++|+....+ ..+.+|+
T Consensus 378 ~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 378 NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 4567776 59999997765 44455 899999874 555666665 6678899999999998866443 4789998
Q ss_pred CCCc
Q psy14906 573 IPSS 576 (583)
Q Consensus 573 ~~~~ 576 (583)
...+
T Consensus 457 ~~~~ 460 (741)
T 2ecf_A 457 ANGE 460 (741)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 7544
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=6.5e-29 Score=238.76 Aligned_cols=294 Identities=10% Similarity=0.091 Sum_probs=221.9
Q ss_pred ccCC-CEEEEEe----CCC----cEEEEEc--CCCcEEEEeeccCCceEEecccCCcceEEEeeCC--------------
Q psy14906 118 LPFG-PHLISVD----EES----NVKVWDI--KAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSP-------------- 172 (583)
Q Consensus 118 s~~~-~~l~s~~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-------------- 172 (583)
.+.| +++++|+ .+| .+++||+ .+++++....+. +|...+..+++++
T Consensus 71 ~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 71 SALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK---------VNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp HTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE---------ECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE---------cChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 4555 4666775 467 8999999 999887443222 7777777777764
Q ss_pred CCCEEEEEecC------CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCC---cEEEEeCCCCeehhhh
Q psy14906 173 VVDIIGVGLSN------KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTG---HLTVWNLEDRQVENQI 243 (583)
Q Consensus 173 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~ 243 (583)
.+..++.++.+ +.|++||+. +.....+..|...+.+++|+|||+ .|++++.++ .|++||+.+++... +
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~~~-l 218 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ-V 218 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence 26677776664 799999997 556777888889999999999999 788887765 89999999887753 4
Q ss_pred hhccccceEEEEEecCCCEEE-EEeCCCe--EEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeC-CC--
Q psy14906 244 KKAHRKVVTGAHFLYNEPLLV-TSSPDNT--LKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG-DS-- 317 (583)
Q Consensus 244 ~~~~~~~v~~~~~~~~~~~l~-s~~~d~~--i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-- 317 (583)
..|...+.+++|+|||++|+ +++.++. |.+||++. ++ ...+..|...+.+++|+| |++.|++++. ++
T Consensus 219 -~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~----~~-~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 219 -ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS----GQ-IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRP 291 (415)
T ss_dssp -ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT----CC-EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSC
T ss_pred -ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC----CC-EEeCcCCCCcccceEECC-CCCEEEEEECCCCCc
Confidence 46788999999999999888 6666655 77786542 22 356777888899999998 8998888776 45
Q ss_pred cEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccc
Q psy14906 318 TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKM 397 (583)
Q Consensus 318 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 397 (583)
.|++||+.+++.....
T Consensus 292 ~i~~~d~~~~~~~~l~---------------------------------------------------------------- 307 (415)
T 2hqs_A 292 QVYKVNINGGAPQRIT---------------------------------------------------------------- 307 (415)
T ss_dssp EEEEEETTSSCCEECC----------------------------------------------------------------
T ss_pred EEEEEECCCCCEEEEe----------------------------------------------------------------
Confidence 5777787665421110
Q ss_pred cceeeecccccccCCCCceEEEEccCCcEEEEEecC---ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEE
Q psy14906 398 DDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS---GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIV 474 (583)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 474 (583)
.+...+.+++|+|+|++|++++.+ ..|++||+.+++... + ..|. .+.+++|+|++++|
T Consensus 308 ------------~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l-----~~~~-~~~~~~~spdg~~l 368 (415)
T 2hqs_A 308 ------------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L-----SSTF-LDETPSLAPNGTMV 368 (415)
T ss_dssp ------------CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-C-----CCSS-SCEEEEECTTSSEE
T ss_pred ------------cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-e-----cCCC-CcCCeEEcCCCCEE
Confidence 001356789999999999988764 689999999887643 3 3443 89999999999999
Q ss_pred EEeecCC---cEEEEEccCCCCCceEEeeccCCeeeEEeccCCc
Q psy14906 475 ISGGNDQ---TVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESS 515 (583)
Q Consensus 475 ~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 515 (583)
++++.++ .|++||+... .......+.+.|.+++|+|...
T Consensus 369 ~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCCC
T ss_pred EEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCccccccc
Confidence 9888777 7999999864 4333344557899999999654
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1.3e-28 Score=257.10 Aligned_cols=337 Identities=10% Similarity=0.074 Sum_probs=237.3
Q ss_pred ccEEEE--ccCCCEEEEEeC-CC-----cEEEEEcCCCcEEEEeeccCCc-----eEEec--------ccCCcceEEEee
Q psy14906 112 SPVHLI--LPFGPHLISVDE-ES-----NVKVWDIKAEETYLELSFDNDT-----FKIMG--------KRWNSCVNVLEP 170 (583)
Q Consensus 112 ~~v~~i--s~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~i~~~~~ 170 (583)
..+.++ ||||++|++++. |+ .|++||+.+++....+...... ..... ......+.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 345554 999999999998 88 8999999999877666532100 00000 000034889999
Q ss_pred CCCCCEEEEEecCCeEEEEEccCCc--eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccc
Q psy14906 171 SPVVDIIGVGLSNKKIILHNILTDE--SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR 248 (583)
Q Consensus 171 s~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 248 (583)
||||++|++++. +.|++||+.+++ ....+..+...+..++|+|||+ .|+.++ ++.|++||+.+++..... ..+.
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~-~~~~ 192 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQLT-ADGS 192 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEECC-CCCC
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEec-cCCc
Confidence 999999999886 899999999873 4455677778899999999999 677776 468999999988766544 3333
Q ss_pred cc----------------eEEEEEecCCCEEEEEeCCC---------------------------------eEEEEEccC
Q psy14906 249 KV----------------VTGAHFLYNEPLLVTSSPDN---------------------------------TLKLWIFDK 279 (583)
Q Consensus 249 ~~----------------v~~~~~~~~~~~l~s~~~d~---------------------------------~i~~w~~~~ 279 (583)
.. +.+++|+|||++|++++.|+ .|.+||++
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~- 271 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA- 271 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS-
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC-
Confidence 22 47899999999999987665 66777543
Q ss_pred CC-CCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeC-----CCcEEEEEccccccceeeccchhhhhhhhhhcchhccc
Q psy14906 280 AD-GNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG-----DSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 280 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
. +....+.....|...+..++| | |+++|++++. +..|++||+.+++....+....
T Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---------------- 332 (741)
T 2ecf_A 272 -EQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS---------------- 332 (741)
T ss_dssp -TTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC----------------
T ss_pred -CCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC----------------
Confidence 2 222221111246778899999 8 7888887653 5678999988765433221000
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS 433 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 433 (583)
...-..+..++|+|||++++++..+
T Consensus 333 -------------------------------------------------------~~~~~~~~~~~~spdg~~~~~~~~~ 357 (741)
T 2ecf_A 333 -------------------------------------------------------PTWVPLHNSLRFLDDGSILWSSERT 357 (741)
T ss_dssp -------------------------------------------------------SSCCCCCSCCEECTTSCEEEEECTT
T ss_pred -------------------------------------------------------CCcCCcCCceEECCCCeEEEEecCC
Confidence 0000134578999999999999999
Q ss_pred ceEEEEEcc-cCccccccCCCCCCCcccCeeEE-EEeCCCcEEE-EeecCC--cEEEEEccCCCCCceEEeeccCCeeeE
Q psy14906 434 GHVDRFNIQ-SGAHRGSYGHDNQPGHVGGVRGV-VSDNLNQIVI-SGGNDQ--TVKVWHFKQTGKPPLRSIKLDNGISFF 508 (583)
Q Consensus 434 g~i~i~d~~-~~~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~ 508 (583)
|.+.+|.+. ++. ...+ ..|...+..+ .|+|+++.|+ +++.++ .+++|++.... .....+.....+..+
T Consensus 358 g~~~l~~~~~~~~-~~~l-----~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g-~~~~~l~~~~~~~~~ 430 (741)
T 2ecf_A 358 GFQHLYRIDSKGK-AAAL-----THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG-GQPQRLSKAPGMHSA 430 (741)
T ss_dssp SSCEEEEECSSSC-EEES-----CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC-CCCEECCCSCSEEEE
T ss_pred CccEEEEEcCCCC-eeee-----eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC-CCeeecccCCCceEE
Confidence 987777765 344 5555 5677788887 5999998775 445555 89999987532 445555556678899
Q ss_pred EeccCCcEEEEEeCC----ceEEEEEcccc
Q psy14906 509 RTHQESSMLAVCLDD----FTVNIIDIDTC 534 (583)
Q Consensus 509 ~~s~~~~~l~~~~~d----g~i~i~d~~~~ 534 (583)
+|+|||++|+....+ ..+++++...+
T Consensus 431 ~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 431 SFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 999999988876544 57899987643
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.97 E-value=7e-29 Score=258.39 Aligned_cols=357 Identities=8% Similarity=0.043 Sum_probs=243.7
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCc---ceEEEeeCCCCCEEEEEecC---------C
Q psy14906 117 ILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNS---CVNVLEPSPVVDIIGVGLSN---------K 184 (583)
Q Consensus 117 is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~d---------~ 184 (583)
++|||+++++ +.||+|++||+.+++....+. .+.. .|.+++|||||++|++++.+ +
T Consensus 24 ~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~-----------~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIE-----------GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC-----------TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred EcCCCcEEEE-eCCCCEEEEECCCCcEEEEec-----------cccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 4999998877 789999999999998877665 4443 48999999999999998764 7
Q ss_pred eEEEEEccCCceeEEEe---ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccc-----------
Q psy14906 185 KIILHNILTDESLMEFI---QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKV----------- 250 (583)
Q Consensus 185 ~i~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------- 250 (583)
.+.+||+.+++. ..+. .+...+..++|+|||+ .|+.++. +.|++||+.+++..... ..+...
T Consensus 92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHH
T ss_pred eEEEEECCCCce-EeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeE
Confidence 888999998876 3343 3444588999999999 5666664 78999999988765544 333332
Q ss_pred -------eEEEEEecCCCEEEEEeCC-CeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEE
Q psy14906 251 -------VTGAHFLYNEPLLVTSSPD-NTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIF 322 (583)
Q Consensus 251 -------v~~~~~~~~~~~l~s~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 322 (583)
+.+++|+|||++|++++.+ +.+.+|++..... .+...+..+.|.+ +|.. ..+..|++|
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~G~~----~~~~~l~~~ 233 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG---------SIYPTVKPYHYPK-AGSE----NPSISLHVI 233 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS---------SSSCCCEEEECCB-TTSC----CCEEEEEEE
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC---------cCCCcceeccCCC-CCCC----CCeeEEEEE
Confidence 3789999999999988754 4677886543211 1233577888875 5542 334589999
Q ss_pred EccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceee
Q psy14906 323 NTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFL 402 (583)
Q Consensus 323 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 402 (583)
|+.+++....+....
T Consensus 234 d~~~~~~~~~l~~~~----------------------------------------------------------------- 248 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPD----------------------------------------------------------------- 248 (723)
T ss_dssp ESSSSCCCEECCCCC-----------------------------------------------------------------
T ss_pred ECCCCceeEEeeCCc-----------------------------------------------------------------
Confidence 988765433221000
Q ss_pred ecccccccCCCCceEEEEccCCcEEEEEec----CceEEEEEcccCccccccCCCCCCCcccCe----eEEEEeCCCcEE
Q psy14906 403 VPERCKQAKQSKPTCVYITHCGNFVLIGYS----SGHVDRFNIQSGAHRGSYGHDNQPGHVGGV----RGVVSDNLNQIV 474 (583)
Q Consensus 403 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~l 474 (583)
....+...+..++|+|||+++++... +..|++||+.+++....+. ..+...+ ..++|+|||+.|
T Consensus 249 ----~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~----~~~~~~~~~~~~~~~~spdg~~l 320 (723)
T 1xfd_A 249 ----DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE----DESEAWLHRQNEEPVFSKDGRKF 320 (723)
T ss_dssp ----CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE----EECSSCCCCCCCCCEECTTSCSE
T ss_pred ----cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE----eccCCEEeccCCCceEcCCCCeE
Confidence 00001145788999999998877653 3679999999888665541 1233333 378999999977
Q ss_pred EE--eecCC------cEEEEE-ccCCCCC--ceEEee-ccCCeee-EEeccCCcEEEEEeCC---ceEEEEEccccc--e
Q psy14906 475 IS--GGNDQ------TVKVWH-FKQTGKP--PLRSIK-LDNGISF-FRTHQESSMLAVCLDD---FTVNIIDIDTCT--I 536 (583)
Q Consensus 475 ~s--~~~dg------~i~iwd-~~~~~~~--~~~~~~-~~~~v~~-~~~s~~~~~l~~~~~d---g~i~i~d~~~~~--~ 536 (583)
+. ...++ .|.+|| ...+ . +...+. ....+.. ++|+|||+.|+..+.+ +.+++|++.... .
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 398 (723)
T 1xfd_A 321 FFIRAIPQGGRGKFYHITVSSSQPNS--SNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (723)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCS--SSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred EEEEecccCCCcceeEEEEEeccCCC--CccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence 75 44666 466677 3333 2 133333 3344554 6999999998876655 789999986432 3
Q ss_pred EEeecc---cccceeeEEecCCCcEEEEEeCC-C--eEEEEeCCCccc
Q psy14906 537 IRKLSG---HMGQLTDADFSPDSRWLITASMD-C--TIRVWDIPSSQL 578 (583)
Q Consensus 537 ~~~~~~---h~~~v~~l~~s~d~~~l~s~~~d-~--~i~vw~~~~~~~ 578 (583)
...+.. |...+..++|+|||++|+..... + ...+++..+++.
T Consensus 399 ~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~ 446 (723)
T 1xfd_A 399 RQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKK 446 (723)
T ss_dssp CBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred cceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCE
Confidence 344543 67779999999999988765332 2 234455544443
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=1.1e-27 Score=248.34 Aligned_cols=340 Identities=8% Similarity=0.039 Sum_probs=223.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEE-EEee-ccCC--ceEE---ecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccC
Q psy14906 121 GPHLISVDEESNVKVWDIKAEETY-LELS-FDND--TFKI---MGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILT 193 (583)
Q Consensus 121 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~-~~~~--~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~ 193 (583)
|+.+++.+.|+ | +||+.+++.+ ..+. .... .+.. ....+...|.+++|+|| +.++.+ .++.|++||+.+
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~ 110 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA 110 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCC
Confidence 66777777777 8 9999998873 3322 1000 0000 00011256999999999 666665 459999999988
Q ss_pred CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC-----Ceehhhhhhccccc--------------eEEE
Q psy14906 194 DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLED-----RQVENQIKKAHRKV--------------VTGA 254 (583)
Q Consensus 194 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~--------------v~~~ 254 (583)
++... +..+...+.+++|+|||+ .|+.+ .++.|++||+.+ ++..... ..+... +.++
T Consensus 111 ~~~~~-l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~ 186 (706)
T 2z3z_A 111 RKVTY-LFDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGT 186 (706)
T ss_dssp TEEEE-EECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSE
T ss_pred CceEE-ccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCCCcEEec-cCCCCCeEcccchhhhhcCCCceE
Confidence 76654 444557899999999999 66664 679999999998 7665444 233332 4889
Q ss_pred EEecCCCEEEEEe---------------------------------CCCeEEEEEccCCCCCceeeEEe--ccCCCCCee
Q psy14906 255 HFLYNEPLLVTSS---------------------------------PDNTLKLWIFDKADGNGRLLRIR--EGHSAPPNY 299 (583)
Q Consensus 255 ~~~~~~~~l~s~~---------------------------------~d~~i~~w~~~~~~~~~~~~~~~--~~~~~~v~~ 299 (583)
+|+|||++|++++ .+..|.+||++ .++..... ..|...+..
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA----TGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT----TTEEEECCCCSCTTCEEEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC----CCceEeeccCCCCceeEee
Confidence 9999999999987 34678888664 22322222 246677899
Q ss_pred EEEeeCCCCEEEEeeCCC-----cEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeeccccccc
Q psy14906 300 IQFYGNSSDNILSAAGDS-----TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDW 374 (583)
Q Consensus 300 ~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (583)
++|+| |++.|++++.++ .|++||+.+++....+...
T Consensus 263 ~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-------------------------------------- 303 (706)
T 2z3z_A 263 LSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-------------------------------------- 303 (706)
T ss_dssp EEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE--------------------------------------
T ss_pred EEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc--------------------------------------
Confidence 99998 899999877665 8999998876322211000
Q ss_pred ccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc--CCcEEEEEecCceEEEEEcc-cCccccccC
Q psy14906 375 NNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH--CGNFVLIGYSSGHVDRFNIQ-SGAHRGSYG 451 (583)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~ 451 (583)
. .......+..++|+| ||++++++..+|.+++|.+. ++.....+
T Consensus 304 -------------------------------~-~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l- 350 (706)
T 2z3z_A 304 -------------------------------T-DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV- 350 (706)
T ss_dssp -------------------------------E-CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-
T ss_pred -------------------------------c-CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-
Confidence 0 000001246789999 99999999999999999887 56666666
Q ss_pred CCCCCCcccCeeE-EEEeCCCcEEEEeec-CC----cEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCC--
Q psy14906 452 HDNQPGHVGGVRG-VVSDNLNQIVISGGN-DQ----TVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDD-- 523 (583)
Q Consensus 452 ~~~~~~h~~~v~~-~~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 523 (583)
..|...+.. ++|+|+++.|+.++. ++ .|..||+.++ . ...+.+...+..++|+|||++++....+
T Consensus 351 ----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~ 423 (706)
T 2z3z_A 351 ----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--K-TKDLTPESGMHRTQLSPDGSAIIDIFQSPT 423 (706)
T ss_dssp ----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--C-CEESCCSSSEEEEEECTTSSEEEEEEECSS
T ss_pred ----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--C-ceeccCCCceEEEEECCCCCEEEEEecCCC
Confidence 567777877 799999987765554 44 5666666665 3 4445566778999999999988876544
Q ss_pred --ceEEEEEccccceEEeecccccceeeEEec
Q psy14906 524 --FTVNIIDIDTCTIIRKLSGHMGQLTDADFS 553 (583)
Q Consensus 524 --g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s 553 (583)
+.|++||+.+++ ...+. +...+....+.
T Consensus 424 ~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~~ 453 (706)
T 2z3z_A 424 VPRKVTVTNIGKGS-HTLLE-AKNPDTGYAMP 453 (706)
T ss_dssp CSCEEEEEESSSCE-EEEEE-CC------CCC
T ss_pred CCcEEEEEECCCCe-Eeecc-ccchhhhcCCC
Confidence 569999998887 33333 33444444443
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=1.8e-26 Score=216.19 Aligned_cols=282 Identities=11% Similarity=0.077 Sum_probs=203.1
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeC-CCeEEEEEccCCCCCcee-e
Q psy14906 210 LSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP-DNTLKLWIFDKADGNGRL-L 287 (583)
Q Consensus 210 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~~~~~~~~~~~-~ 287 (583)
..|.+++..++++...++.|.+||+.+++....+ ..+...+ .++|+|+++++++++. ++.|.+||++. .+. .
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~----~~~~~ 76 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL----EPPKV 76 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS----SSCEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC----CceeE
Confidence 4566777757888999999999999999888777 4455566 9999999997766665 88999996652 333 5
Q ss_pred EEeccCCCCCeeEEEeeCCCCEEEEeeCCC---cEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCcccee
Q psy14906 288 RIREGHSAPPNYIQFYGNSSDNILSAAGDS---TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQF 364 (583)
Q Consensus 288 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (583)
..+..+..+..+++|+| +++++++...++ .|.+||+.+++....+..
T Consensus 77 ~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----------------------------- 126 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----------------------------- 126 (331)
T ss_dssp EEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------------------------
T ss_pred EecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----------------------------
Confidence 55565666655599997 898888655553 899999987755433211
Q ss_pred eeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEE-ecCce-EEEEEcc
Q psy14906 365 SFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIG-YSSGH-VDRFNIQ 442 (583)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~-i~i~d~~ 442 (583)
...+..++|+|+|++++++ ..++. |.+|++.
T Consensus 127 -----------------------------------------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~ 159 (331)
T 3u4y_A 127 -----------------------------------------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKID 159 (331)
T ss_dssp -----------------------------------------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------------------------CCCccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence 0346789999999866655 45577 9999987
Q ss_pred cCccccccCCCCCCCcccCeeEEEEeCCCcEEE-EeecCCcEEEEEccCCCCCc---eEEeeccCCeeeEEeccCCcEEE
Q psy14906 443 SGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVI-SGGNDQTVKVWHFKQTGKPP---LRSIKLDNGISFFRTHQESSMLA 518 (583)
Q Consensus 443 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~ 518 (583)
......... .........+..++|+|++++++ ++..++.|++||+.++ +. +..+.....+..++|+|||++++
T Consensus 160 ~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~--~~~~~~~~~~~~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 160 ADGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP--ENITLLNAVGTNNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp TTCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST--TSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred CCCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC--cccceeeeccCCCCCceEEECCCCCEEE
Confidence 544321110 00013345589999999999655 4556899999999988 76 77777778899999999999777
Q ss_pred EEe-CCceEEEEEccccce--EEeeccc----ccc---eeeEEecCCCcEEEEEeC-CCeEEEEeCCCcc
Q psy14906 519 VCL-DDFTVNIIDIDTCTI--IRKLSGH----MGQ---LTDADFSPDSRWLITASM-DCTIRVWDIPSSQ 577 (583)
Q Consensus 519 ~~~-~dg~i~i~d~~~~~~--~~~~~~h----~~~---v~~l~~s~d~~~l~s~~~-d~~i~vw~~~~~~ 577 (583)
++. .++.|.+||+.+++. +..+..+ ... ...++|+||+++|++++. ++.|.+||+.+..
T Consensus 237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 665 478899999998877 3333322 222 345899999998866554 5699999998654
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=4.1e-27 Score=244.19 Aligned_cols=358 Identities=12% Similarity=0.060 Sum_probs=226.1
Q ss_pred eEEEeeCCCCCEEEEEecCCeEEEEEccCCcee-EEEeccC-----------------CCeEEEEEecCCCCEEEEEcCC
Q psy14906 165 VNVLEPSPVVDIIGVGLSNKKIILHNILTDESL-MEFIQTW-----------------GPVTALSFRTDGPPMMVSGSNT 226 (583)
Q Consensus 165 i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~l~s~~~d 226 (583)
+..+.|. ++.+++++.++ | +||+.+++.+ ..+..+. ..|.+++|+|| ..++++ .+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~--~~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF--TQ 100 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE--ET
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE--EC
Confidence 4456777 66777777777 8 9999999873 3333322 46999999999 524444 35
Q ss_pred CcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCC-CCCceeeEEeccCCC----------
Q psy14906 227 GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKA-DGNGRLLRIREGHSA---------- 295 (583)
Q Consensus 227 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~-~~~~~~~~~~~~~~~---------- 295 (583)
+.+++||+.+++..... .+...+.+++|+|||++|+++ .++.|.+|+++.. ...++.......+..
T Consensus 101 ~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp TEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred CEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 89999999988765443 466778899999999999986 6899999977530 000222222222222
Q ss_pred ----CCeeEEEeeCCCCEEEEeeCC-CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeeccc
Q psy14906 296 ----PPNYIQFYGNSSDNILSAAGD-STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAR 370 (583)
Q Consensus 296 ----~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (583)
.+.++.|+| |+++|++++.| ..+..+.+......... ......+..
T Consensus 178 ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~-------------------~~~~~y~~~--------- 228 (706)
T 2z3z_A 178 REFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAE-------------------SKPLYYPMA--------- 228 (706)
T ss_dssp GCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCE-------------------EEEECCCBT---------
T ss_pred hhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCc-------------------eEEeeCCCC---------
Confidence 258999998 89999988732 22222222111000000 000000000
Q ss_pred ccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCc-----eEEEEEcccCc
Q psy14906 371 EKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSG-----HVDRFNIQSGA 445 (583)
Q Consensus 371 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~ 445 (583)
. ....+..+.+||+.......... ...+...+..++|+|||++|++++.++ .|++||+.+++
T Consensus 229 ----g----~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~ 295 (706)
T 2z3z_A 229 ----G----TPSHHVTVGIYHLATGKTVYLQT-----GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295 (706)
T ss_dssp ----T----SCCCEEEEEEEETTTTEEEECCC-----CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred ----C----CCCCeeEEEEEECCCCceEeecc-----CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc
Confidence 0 01233568888887654321111 112335688999999999999987665 89999999884
Q ss_pred cccccCCCCCCCcccCeeEEEEeC--CCcEEEEeecCCcEEEEEccCCCCCceEEeec-cCCeee-EEeccCCcEEEEEe
Q psy14906 446 HRGSYGHDNQPGHVGGVRGVVSDN--LNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL-DNGISF-FRTHQESSMLAVCL 521 (583)
Q Consensus 446 ~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~-~~~s~~~~~l~~~~ 521 (583)
....+...........+.+++|+| ||+++++++.|+.+++|.++... ..+..+.. ...+.. ++|+|+|+.|+.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~-~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 296 FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG-RLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS-CEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC-CEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 333321000011112346789999 99999999999999999987321 44444443 345666 79999999877655
Q ss_pred CC-c----eEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCC----CeEEEEeCCCcc
Q psy14906 522 DD-F----TVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMD----CTIRVWDIPSSQ 577 (583)
Q Consensus 522 ~d-g----~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d----~~i~vw~~~~~~ 577 (583)
.+ + .|+.||+.+++ ...+. |...+.+++|||||++|+..+.+ +.|++||+.+++
T Consensus 375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 54 3 67777877766 33444 67779999999999998876443 569999998876
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=7.7e-26 Score=211.88 Aligned_cols=281 Identities=12% Similarity=0.127 Sum_probs=200.4
Q ss_pred ccCCCE-EEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec-CCeEEEEEccCCc
Q psy14906 118 LPFGPH-LISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS-NKKIILHNILTDE 195 (583)
Q Consensus 118 s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~ 195 (583)
.+++++ +++.+.++.|.+||..+++.+..+. .+...+ .++|+|++++|++++. ++.|.+||+.+++
T Consensus 6 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-----------~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 73 (331)
T 3u4y_A 6 QTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-----------LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP 73 (331)
T ss_dssp -CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-----------CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred cCCCCEEEEEecCCCeEEEEeCcccceeeeEE-----------ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 444554 6677788999999999999988876 445556 9999999997766655 8899999999998
Q ss_pred e-eEEEeccCCCeEEEEEecCCCCEEEEEcCCC---cEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEE-eCCC
Q psy14906 196 S-LMEFIQTWGPVTALSFRTDGPPMMVSGSNTG---HLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTS-SPDN 270 (583)
Q Consensus 196 ~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~ 270 (583)
. ...+..+..+..+++|+|+++ +++++..++ .|.+||+.+++.+..+ .+.....+++|+|+|++++++ ..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~ 150 (331)
T 3u4y_A 74 PKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSSA 150 (331)
T ss_dssp CEEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETTT
T ss_pred eeEEecccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCCC
Confidence 8 777777756665599999999 666555553 8999999999888776 234567899999999855554 5557
Q ss_pred e-EEEEEccCCCCCcee-eEEeccCCCCCeeEEEeeCCCCEEEEe-eCCCcEEEEEcccccc---ceeeccchhhhhhhh
Q psy14906 271 T-LKLWIFDKADGNGRL-LRIREGHSAPPNYIQFYGNSSDNILSA-AGDSTLRIFNTKSETS---NKNLGIASANRNNLK 344 (583)
Q Consensus 271 ~-i~~w~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~ 344 (583)
. +.+|+++........ ...+ .....+..++|+| ++++++.+ ..++.|.+||+.+++. ...+..
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--------- 219 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGT--------- 219 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---------
T ss_pred ceEEEEEECCCCcEeecCCccc-cCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---------
Confidence 8 999988742111111 1222 3344578999997 78765554 4689999999987765 221100
Q ss_pred hhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCC
Q psy14906 345 RKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCG 424 (583)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 424 (583)
...+..++|+|||
T Consensus 220 -------------------------------------------------------------------~~~~~~~~~spdg 232 (331)
T 3u4y_A 220 -------------------------------------------------------------------NNLPGTIVVSRDG 232 (331)
T ss_dssp -------------------------------------------------------------------SSCCCCEEECTTS
T ss_pred -------------------------------------------------------------------CCCCceEEECCCC
Confidence 0356789999999
Q ss_pred cEEEEEe-cCceEEEEEcccCcc--ccccCCC--CCCCcccCeeEEEEeCCCcEEEEee-cCCcEEEEEccCC
Q psy14906 425 NFVLIGY-SSGHVDRFNIQSGAH--RGSYGHD--NQPGHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQT 491 (583)
Q Consensus 425 ~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~ 491 (583)
++++++. .++.|.+||+.+++. +..+... ...........++|+|++++|+.++ .++.|.+||+...
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9877665 578899999998876 2222100 0011222335699999999886555 5679999999875
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1e-25 Score=212.37 Aligned_cols=278 Identities=10% Similarity=0.111 Sum_probs=197.1
Q ss_pred EEEEEcCCCcEEEEeCC-CC--eehhhhhhccccceEEEEEecCCCEEEEEeCC-CeEEEEEccCCCCCceeeEEeccCC
Q psy14906 219 MMVSGSNTGHLTVWNLE-DR--QVENQIKKAHRKVVTGAHFLYNEPLLVTSSPD-NTLKLWIFDKADGNGRLLRIREGHS 294 (583)
Q Consensus 219 ~l~s~~~dg~i~vwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~ 294 (583)
++++++.++.|++||+. ++ +.+..+ .+...+.+++|+|++++|++++.+ +.+.+|+++...+....+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 55566889999999995 33 333333 577789999999999998888876 9999998875444555555555544
Q ss_pred CCCeeEEEeeCCCCEEEEeeC-CCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccc
Q psy14906 295 APPNYIQFYGNSSDNILSAAG-DSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKD 373 (583)
Q Consensus 295 ~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (583)
.+..++|+| +++++++++. ++.|.+||+..+......
T Consensus 85 -~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------------- 122 (343)
T 1ri6_A 85 -SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVV---------------------------------------- 122 (343)
T ss_dssp -CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred -CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccc----------------------------------------
Confidence 789999997 7887766654 888999998522111100
Q ss_pred cccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe-cCceEEEEEccc-Ccccc---
Q psy14906 374 WNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY-SSGHVDRFNIQS-GAHRG--- 448 (583)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~-~~~~~--- 448 (583)
... .....+.+++|+|+++++++++ .++.|.+||+.+ ++...
T Consensus 123 --------------~~~-------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 169 (343)
T 1ri6_A 123 --------------DVV-------------------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 169 (343)
T ss_dssp --------------EEE-------------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred --------------ccc-------------------cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence 000 0013477899999999888877 899999999987 54422
Q ss_pred -ccCCCCCCCcccCeeEEEEeCCCcEEEEe-ecCCcEEEEEccCCCCCc--eEEeec-------cCCeeeEEeccCCcEE
Q psy14906 449 -SYGHDNQPGHVGGVRGVVSDNLNQIVISG-GNDQTVKVWHFKQTGKPP--LRSIKL-------DNGISFFRTHQESSML 517 (583)
Q Consensus 449 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~--~~~~~~-------~~~v~~~~~s~~~~~l 517 (583)
.+. ......+..++|+|++++++.+ ..++.|.+|++.....+. ...... ...+..++|+|+|++|
T Consensus 170 ~~~~----~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 170 AEVT----TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEE----CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred cccc----cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 111 1234578899999999977555 478999999996421132 222221 1245679999999988
Q ss_pred EEEe-CCceEEEEEcc----ccceEEeecccccceeeEEecCCCcEEEEEe-CCCeEEEEeC--CCccc
Q psy14906 518 AVCL-DDFTVNIIDID----TCTIIRKLSGHMGQLTDADFSPDSRWLITAS-MDCTIRVWDI--PSSQL 578 (583)
Q Consensus 518 ~~~~-~dg~i~i~d~~----~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~d~~i~vw~~--~~~~~ 578 (583)
+++. .++.|.+||+. +.+.+..+..+.. +..++|+||+++|++++ .|+.|.+|++ .+|++
T Consensus 246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 246 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 7554 78999999998 3345555655544 89999999999888887 6899999954 46643
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=8.7e-27 Score=242.60 Aligned_cols=318 Identities=8% Similarity=-0.042 Sum_probs=223.7
Q ss_pred cceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCC---CeEEEEEecCCCCEEEEEcCC---------CcEE
Q psy14906 163 SCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWG---PVTALSFRTDGPPMMVSGSNT---------GHLT 230 (583)
Q Consensus 163 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d---------g~i~ 230 (583)
..+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||+ .|++++.+ +.+.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC-EEEEEecCccceeecceeeEE
Confidence 44678999999997766 7899999999999998888877754 499999999999 77777653 7788
Q ss_pred EEeCCCCee--hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCC-----------
Q psy14906 231 VWNLEDRQV--ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPP----------- 297 (583)
Q Consensus 231 vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v----------- 297 (583)
+||+.+++. +... .+|...+..++|+|||+.|+.++. +.|.+|+++. ++.......+...+
T Consensus 95 ~~d~~~~~~~~l~~~-~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~----g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPP-EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG----KQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp EEESSSCCCEECCCT-TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS----SCCEEEECCCBTTTEEEEECCHHHH
T ss_pred EEECCCCceEeccCC-ccccccccccEECCCCCEEEEEEC-CeEEEEECCC----CceEEEecCCCCCceECcccceeEE
Confidence 999998875 2222 345556889999999999999885 7899996542 23333333333333
Q ss_pred -------eeEEEeeCCCCEEEEeeCC-CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecc
Q psy14906 298 -------NYIQFYGNSSDNILSAAGD-STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLA 369 (583)
Q Consensus 298 -------~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (583)
.+++|+| |+++|++++.+ +.+.+|++......
T Consensus 169 ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~--------------------------------------- 208 (723)
T 1xfd_A 169 EEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGS--------------------------------------- 208 (723)
T ss_dssp HTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSS---------------------------------------
T ss_pred EEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCc---------------------------------------
Confidence 7899998 89999888754 45666665321100
Q ss_pred cccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccc
Q psy14906 370 REKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGS 449 (583)
Q Consensus 370 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 449 (583)
....+..+.+.++|.. ..+..|++||+.+++....
T Consensus 209 -----------------------------------------~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~ 243 (723)
T 1xfd_A 209 -----------------------------------------IYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLE 243 (723)
T ss_dssp -----------------------------------------SSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEE
T ss_pred -----------------------------------------CCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEE
Confidence 0023667777777753 3456899999998876555
Q ss_pred cCCC-CCCCcccCeeEEEEeCCCcEEEEeec----CCcEEEEEccCCCCCceEEeec--cCCe----eeEEeccCCcEEE
Q psy14906 450 YGHD-NQPGHVGGVRGVVSDNLNQIVISGGN----DQTVKVWHFKQTGKPPLRSIKL--DNGI----SFFRTHQESSMLA 518 (583)
Q Consensus 450 ~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~--~~~v----~~~~~s~~~~~l~ 518 (583)
+... ....+...+..++|+|||++|++... +..|++||+.++ ++...+.. ...+ ..++|+|||+.|+
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 321 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG--VCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC--CEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC--cceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence 5210 00123678999999999998877653 357999999887 65554432 2333 3889999999777
Q ss_pred E--EeCCc------eEEEEE-ccccc--eEEeecccccceee-EEecCCCcEEEEEeCC---CeEEEEeCCC
Q psy14906 519 V--CLDDF------TVNIID-IDTCT--IIRKLSGHMGQLTD-ADFSPDSRWLITASMD---CTIRVWDIPS 575 (583)
Q Consensus 519 ~--~~~dg------~i~i~d-~~~~~--~~~~~~~h~~~v~~-l~~s~d~~~l~s~~~d---~~i~vw~~~~ 575 (583)
. +..++ .|++|| ..+++ ....+..+...+.. ++|+|||++|+..+.+ +.+++|++..
T Consensus 322 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 5 44566 577777 34444 14555544444554 6999999999866655 7899999864
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=3.1e-26 Score=215.28 Aligned_cols=279 Identities=9% Similarity=-0.004 Sum_probs=209.8
Q ss_pred CEEEEEecCCeEEEEEccCCceeEEEeccCC--CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhcc----c
Q psy14906 175 DIIGVGLSNKKIILHNILTDESLMEFIQTWG--PVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAH----R 248 (583)
Q Consensus 175 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~ 248 (583)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|+++.+++++..++.|.+||+.+++.+..+..++ .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788999999999999999999888875422 588999999998566777778999999999988776663222 2
Q ss_pred cceEEEEEecCCCEEEEEe------------CCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC
Q psy14906 249 KVVTGAHFLYNEPLLVTSS------------PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD 316 (583)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~------------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 316 (583)
..+..++|+|+|+++++++ .++.|.+||++ ..+....+.. ...+..++|+| ++++|+++ +
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~----~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~ 153 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE----TLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--G 153 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT----TTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--S
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC----CCcEEEEEeC-CCCcceeEECC-CCCEEEEe--C
Confidence 3677899999999988886 57999999764 3455555543 44678899997 78888877 6
Q ss_pred CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccc
Q psy14906 317 STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSK 396 (583)
Q Consensus 317 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 396 (583)
+.|.+||+.+++....+.....
T Consensus 154 ~~i~~~d~~~~~~~~~~~~~~~---------------------------------------------------------- 175 (337)
T 1pby_B 154 RDLHVMDPEAGTLVEDKPIQSW---------------------------------------------------------- 175 (337)
T ss_dssp SSEEEEETTTTEEEEEECSTTT----------------------------------------------------------
T ss_pred CeEEEEECCCCcEeeeeecccc----------------------------------------------------------
Confidence 8999999988765543321100
Q ss_pred ccceeeecccccccCCCCceEEEEccCCcEEEEEecC------------------------ceEEEEEcccCccccccCC
Q psy14906 397 MDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS------------------------GHVDRFNIQSGAHRGSYGH 452 (583)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------------g~i~i~d~~~~~~~~~~~~ 452 (583)
...+.++|+++.+++.... ..|.+||+.+++.. .+..
T Consensus 176 ------------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~ 236 (337)
T 1pby_B 176 ------------------EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV 236 (337)
T ss_dssp ------------------TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE
T ss_pred ------------------CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec
Confidence 0001233443333222211 15889999988765 2211
Q ss_pred CCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEcc
Q psy14906 453 DNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDID 532 (583)
Q Consensus 453 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 532 (583)
..+...+.+++|+|++++++++ ++.|.+||+.++ +.+..+.....+.+++|+|+|++|++++.++.|++||+.
T Consensus 237 ---~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 237 ---RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN--ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ---EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT--EEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred ---CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC--cCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 3456678899999999998888 689999999987 777777777789999999999999999999999999999
Q ss_pred ccceEEeeccccc
Q psy14906 533 TCTIIRKLSGHMG 545 (583)
Q Consensus 533 ~~~~~~~~~~h~~ 545 (583)
+++.+..+..+..
T Consensus 310 ~~~~~~~~~~~~~ 322 (337)
T 1pby_B 310 TLEKKGQVDLPGN 322 (337)
T ss_dssp TCCEEEEEECGGG
T ss_pred CCcEEEEEEcCCC
Confidence 9998888775533
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=9.7e-26 Score=212.49 Aligned_cols=304 Identities=15% Similarity=0.184 Sum_probs=202.5
Q ss_pred CEEEE-EeCCCcEEEEEcC-CCc--EEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC-CeEEEEEcc--CC
Q psy14906 122 PHLIS-VDEESNVKVWDIK-AEE--TYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN-KKIILHNIL--TD 194 (583)
Q Consensus 122 ~~l~s-~~~dg~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-~~i~iw~~~--~~ 194 (583)
+++++ ++.|+.|++||+. +++ .+..+ .+...+.+++|+|++++|++++.+ +.|.+|++. ++
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~ 72 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV------------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 72 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE------------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE------------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC
Confidence 34444 4779999999996 342 22222 556788899999999999888876 899999997 55
Q ss_pred c--eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC---CCeehhhhhhccccceEEEEEecCCCEEEEEe-C
Q psy14906 195 E--SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLE---DRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS-P 268 (583)
Q Consensus 195 ~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~ 268 (583)
+ .+..+..+ ..+..++|+|+++++++++..++.|.+||+. ..+....+ . ....+.+++|+|+++++++++ .
T Consensus 73 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~ 149 (343)
T 1ri6_A 73 ALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALK 149 (343)
T ss_dssp CEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGG
T ss_pred ceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCC
Confidence 4 33445555 4889999999999444555568899999994 33444444 2 334688999999999888877 8
Q ss_pred CCeEEEEEccCCCCCceeeE--Eecc-CCCCCeeEEEeeCCCCEEEEe-eCCCcEEEEEccc--cccceeeccchhhhhh
Q psy14906 269 DNTLKLWIFDKADGNGRLLR--IREG-HSAPPNYIQFYGNSSDNILSA-AGDSTLRIFNTKS--ETSNKNLGIASANRNN 342 (583)
Q Consensus 269 d~~i~~w~~~~~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~ 342 (583)
++.|.+|+++.. +...... .... ....+..++|+| ++++++++ ..++.+.+|++.. +......
T Consensus 150 ~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~--------- 218 (343)
T 1ri6_A 150 QDRICLFTVSDD-GHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQ--------- 218 (343)
T ss_dssp GTEEEEEEECTT-SCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEE---------
T ss_pred CCEEEEEEecCC-CceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEe---------
Confidence 899999987531 1222222 2222 334678899997 78866555 4789999999853 2110000
Q ss_pred hhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc
Q psy14906 343 LKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH 422 (583)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 422 (583)
..... +.. ......+..++|+|
T Consensus 219 ----------------------------------------------~~~~~----------~~~--~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 219 ----------------------------------------------TLDMM----------PEN--FSDTRWAADIHITP 240 (343)
T ss_dssp ----------------------------------------------EEECS----------CTT--CCSCCCEEEEEECT
T ss_pred ----------------------------------------------ecccc----------Ccc--ccccCCccceEECC
Confidence 00000 000 00013567899999
Q ss_pred CCcEEEEEe-cCceEEEEEcc--cC--ccccccCCCCCCCcccCeeEEEEeCCCcEEEEee-cCCcEEEEEcc--CCCCC
Q psy14906 423 CGNFVLIGY-SSGHVDRFNIQ--SG--AHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFK--QTGKP 494 (583)
Q Consensus 423 ~~~~l~~~~-~dg~i~i~d~~--~~--~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~--~~~~~ 494 (583)
++++++++. .++.|.+||+. ++ +....+ ..+. .+.+++|+|++++|++++ .++.|.+|+++ ++..+
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-----PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-----ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeee-----cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceee
Confidence 998887554 78999999998 22 233333 2233 388999999999888777 68999999665 33112
Q ss_pred ceEEeeccCCeeeEEeccCCc
Q psy14906 495 PLRSIKLDNGISFFRTHQESS 515 (583)
Q Consensus 495 ~~~~~~~~~~v~~~~~s~~~~ 515 (583)
.+..+.......+++|.|+.+
T Consensus 315 ~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 315 EKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEECSSSCCEEEEEEEC-
T ss_pred EccccccCCCCeeEEEEcccC
Confidence 334444445677777777543
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=5.9e-25 Score=208.02 Aligned_cols=277 Identities=9% Similarity=0.005 Sum_probs=216.4
Q ss_pred CcceEEEeeCCCCCEEEEEec-------CCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q psy14906 162 NSCVNVLEPSPVVDIIGVGLS-------NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL 234 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 234 (583)
...+..++|+|++++|++++. ++.|.+||..+++.+..+... ..+..++|+|+++.++++...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456789999999999888774 568999999999998888765 568899999999856667777899999999
Q ss_pred CCCeehhhhhhcccc--------ceEEEEEecCCCEEEEEe--CCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEee
Q psy14906 235 EDRQVENQIKKAHRK--------VVTGAHFLYNEPLLVTSS--PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYG 304 (583)
Q Consensus 235 ~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~s~~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 304 (583)
.+++.+..+..++.. .+.+++|+|+++++++++ .++.|.+||.+ ..+....+..+...+..++|+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG----NIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT----TTEEEEEECCCCTTCCCCEEET
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC----CCceEEEecCCCCccceEEECC
Confidence 999887776322211 278899999999877776 47889999664 4566666665666688999997
Q ss_pred CCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCC
Q psy14906 305 NSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGK 384 (583)
Q Consensus 305 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (583)
+++++++++.++.+.+||+.+++....+....
T Consensus 195 -dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~----------------------------------------------- 226 (353)
T 3vgz_A 195 -EGKRLYTTNADGELITIDTADNKILSRKKLLD----------------------------------------------- 226 (353)
T ss_dssp -TTTEEEEECTTSEEEEEETTTTEEEEEEECCC-----------------------------------------------
T ss_pred -CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC-----------------------------------------------
Confidence 89999999999999999998876544321100
Q ss_pred ceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec-CceEEEEEcccCccccccCCCCCCCcccCee
Q psy14906 385 NKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS-SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVR 463 (583)
Q Consensus 385 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~ 463 (583)
..+...+..++++|++++++++.. ++.|.+||..+++....+.. .. ..
T Consensus 227 ------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~--~~ 275 (353)
T 3vgz_A 227 ------------------------DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-----PE--SL 275 (353)
T ss_dssp ------------------------SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC-----SS--CC
T ss_pred ------------------------CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-----CC--Cc
Confidence 001145778999999998777665 49999999999988777632 21 25
Q ss_pred EEEEeCCCcEEEEee-cCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCc
Q psy14906 464 GVVSDNLNQIVISGG-NDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDF 524 (583)
Q Consensus 464 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 524 (583)
.++|+|++++++.++ .++.|.+||..++ +.+..+.....+..++|+|+|++|+++..++
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSY--KVVKTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCC--eEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 799999999665544 7899999999988 7888888888899999999999887776653
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3e-24 Score=203.10 Aligned_cols=273 Identities=9% Similarity=0.046 Sum_probs=208.4
Q ss_pred CCeEEEEEecCCCCEEEEEcC-------CCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEE-EeCCCeEEEEE
Q psy14906 205 GPVTALSFRTDGPPMMVSGSN-------TGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVT-SSPDNTLKLWI 276 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~~w~ 276 (583)
..+..++|+|+++ .+++++. ++.|.+||..+++.+..+ . ....+..++|+|++++++. ...++.|.+||
T Consensus 41 ~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI-H-NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEE-E-ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE-e-cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 5788999999998 5555553 568999999999888777 2 3455788999999995554 45579999996
Q ss_pred ccCCCCCceeeEEeccCCCC---------CeeEEEeeCCCCEEEEee--CCCcEEEEEccccccceeeccchhhhhhhhh
Q psy14906 277 FDKADGNGRLLRIREGHSAP---------PNYIQFYGNSSDNILSAA--GDSTLRIFNTKSETSNKNLGIASANRNNLKR 345 (583)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 345 (583)
.. .++.+..+..+... +..++|+| +++++++++ .++.|.+||..+++....+..
T Consensus 118 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---------- 182 (353)
T 3vgz_A 118 AK----TGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQN---------- 182 (353)
T ss_dssp TT----TCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECC----------
T ss_pred CC----CCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecC----------
Confidence 64 34455555443322 57899997 788777665 478899999987765433210
Q ss_pred hcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCc
Q psy14906 346 KNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGN 425 (583)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 425 (583)
....+..++++|+++
T Consensus 183 -----------------------------------------------------------------~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 183 -----------------------------------------------------------------TGKMSTGLALDSEGK 197 (353)
T ss_dssp -----------------------------------------------------------------CCTTCCCCEEETTTT
T ss_pred -----------------------------------------------------------------CCCccceEEECCCCC
Confidence 003467889999999
Q ss_pred EEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec-CCcEEEEEccCCCCCceEEeeccCC
Q psy14906 426 FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN-DQTVKVWHFKQTGKPPLRSIKLDNG 504 (583)
Q Consensus 426 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~ 504 (583)
+++++..++.|.+||..+++....+.... .++...+.+++|+|++++++.++. ++.|.+||+.++ +.+..+....+
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~ 274 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLD-DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--NILAKVAAPES 274 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC-SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--CEEEEEECSSC
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCC-CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--cEEEEEEcCCC
Confidence 99999999999999999998877663210 235667889999999997766654 589999999988 77777766554
Q ss_pred eeeEEeccCCcEEEEEe-CCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCC
Q psy14906 505 ISFFRTHQESSMLAVCL-DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMD 565 (583)
Q Consensus 505 v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d 565 (583)
..++|+|+|++++++. .++.|.+||..+++.+..+..+ ..+.+++|+|||++|+.+..+
T Consensus 275 -~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 275 -LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred -ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 6799999999766665 6899999999999988887754 468999999999987766655
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=3e-25 Score=208.53 Aligned_cols=270 Identities=8% Similarity=-0.008 Sum_probs=201.5
Q ss_pred EEEEEcCCCcEEEEeCCCCeehhhhhhcccc-ceEEEEEecCCCEE-EEEeCCCeEEEEEccCCCCCceeeEEecc-C--
Q psy14906 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRK-VVTGAHFLYNEPLL-VTSSPDNTLKLWIFDKADGNGRLLRIREG-H-- 293 (583)
Q Consensus 219 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-~-- 293 (583)
++++++.++.|.+||+.+++.+..+..++.. .+..++|+|+++++ +++..++.|.+||+. .++.+..+.. +
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~----~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV----TGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT----TCCEEEEEECCBTT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC----CCCeEeeEEcCCcc
Confidence 7889999999999999999888777323322 47889999999865 455567899999764 3344444332 1
Q ss_pred --CCCCeeEEEeeCCCCEEEEee------------CCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCC
Q psy14906 294 --SAPPNYIQFYGNSSDNILSAA------------GDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILP 359 (583)
Q Consensus 294 --~~~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (583)
...+..++|+| ++++++++. .++.|.+||+.+++....+..
T Consensus 79 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------------------ 133 (337)
T 1pby_B 79 ERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------------------------ 133 (337)
T ss_dssp EEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------------------------
T ss_pred cccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC------------------------
Confidence 22678899997 788888886 578999999876654332210
Q ss_pred ccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEE
Q psy14906 360 PVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRF 439 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 439 (583)
...+..++|+|++++++++ ++.|++|
T Consensus 134 ----------------------------------------------------~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 134 ----------------------------------------------------PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp ----------------------------------------------------CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ----------------------------------------------------CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 0346788999999988888 6889999
Q ss_pred EcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCC------------------------cEEEEEccCCCCCc
Q psy14906 440 NIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQ------------------------TVKVWHFKQTGKPP 495 (583)
Q Consensus 440 d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------------------------~i~iwd~~~~~~~~ 495 (583)
|+.+++....+... .+..+ +.|+|+++.++..+.++ .|.+||+.++ +.
T Consensus 160 d~~~~~~~~~~~~~---~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~ 231 (337)
T 1pby_B 160 DPEAGTLVEDKPIQ---SWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG--EM 231 (337)
T ss_dssp ETTTTEEEEEECST---TTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC--CE
T ss_pred ECCCCcEeeeeecc---ccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC--Cc
Confidence 99998877666321 11122 37899988665544332 4689999887 44
Q ss_pred e-E-EeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeEEEEeC
Q psy14906 496 L-R-SIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573 (583)
Q Consensus 496 ~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~ 573 (583)
. . ...+...+..++|+|+|++++++ ++.|++||+.+++.+..+.. ...+.+++|+||+++|++++.++.|++||+
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 3 1 11233467889999999999988 68999999999988877764 356889999999999999999999999999
Q ss_pred CCccccccc
Q psy14906 574 PSSQLIDCF 582 (583)
Q Consensus 574 ~~~~~~~~~ 582 (583)
.+++.++.+
T Consensus 309 ~~~~~~~~~ 317 (337)
T 1pby_B 309 ETLEKKGQV 317 (337)
T ss_dssp TTCCEEEEE
T ss_pred cCCcEEEEE
Confidence 999887765
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=9.7e-25 Score=201.04 Aligned_cols=255 Identities=13% Similarity=0.138 Sum_probs=188.9
Q ss_pred EEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccC-CCCCeeE
Q psy14906 222 SGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGH-SAPPNYI 300 (583)
Q Consensus 222 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~v~~~ 300 (583)
.++.++.|++||+.+++.... ..|...+.+++|+|++++|++++ ++.|.+|+++.. .+.......+ ...+.++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~--~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~ 90 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVV--WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGD---PSPEKVDTGFATICNNDH 90 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEE--EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSC---CSCEECCCTTCCCBCSCC
T ss_pred CCCcceeEEEEeCCCCceeee--ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCC---CCceEeccccccccccce
Confidence 345788999999998887644 36889999999999999999987 789999976530 3333444444 3678899
Q ss_pred EEeeCCCCEEEEee--CCCcEEEEEcc--ccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeeccccccccc
Q psy14906 301 QFYGNSSDNILSAA--GDSTLRIFNTK--SETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNN 376 (583)
Q Consensus 301 ~~~~~~~~~l~~~~--~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (583)
+|+| ++++|++++ .++...+|.+. ++.. ..+.
T Consensus 91 ~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~------------------------------------------ 126 (297)
T 2ojh_A 91 GISP-DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT------------------------------------------ 126 (297)
T ss_dssp EECT-TSSEEEEEECTTTSSCEEEEEETTCCCC-EECC------------------------------------------
T ss_pred EECC-CCCEEEEEEeCCCCcceEEEEECCCCce-EEee------------------------------------------
Confidence 9997 899999988 34556666553 2221 1100
Q ss_pred EEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEE-EEecCceEEEEEccc-CccccccCCCC
Q psy14906 377 IAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVL-IGYSSGHVDRFNIQS-GAHRGSYGHDN 454 (583)
Q Consensus 377 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~ 454 (583)
....+..++|+|++++++ ++..++.+.+|++.. +.....+
T Consensus 127 ----------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~---- 168 (297)
T 2ojh_A 127 ----------------------------------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL---- 168 (297)
T ss_dssp ----------------------------------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC----
T ss_pred ----------------------------------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc----
Confidence 002367889999999887 677889899998642 2223333
Q ss_pred CCCcccCeeEEEEeCCCcEEEEee-cCCcEEEEEccCCCCCceEEe-eccCCeeeEEeccCCcEEEEEeCC---------
Q psy14906 455 QPGHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQTGKPPLRSI-KLDNGISFFRTHQESSMLAVCLDD--------- 523 (583)
Q Consensus 455 ~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d--------- 523 (583)
..|...+.+++|+|++++|+.++ .++.+++|++.... .....+ .+...+..++|+|+|++|++++.+
T Consensus 169 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 169 -THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp -CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred -ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 56778899999999999887666 58999999987332 333333 344578899999999999888765
Q ss_pred --ceEEEEEccccce--EEeecccccceeeEEecCCCcEEEEEeCCC
Q psy14906 524 --FTVNIIDIDTCTI--IRKLSGHMGQLTDADFSPDSRWLITASMDC 566 (583)
Q Consensus 524 --g~i~i~d~~~~~~--~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~ 566 (583)
+.|++||+++++. +..+.+|...+.+++|+||+++|++++.|.
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6799999998865 444557888999999999999999887664
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=6.4e-25 Score=202.24 Aligned_cols=256 Identities=7% Similarity=-0.016 Sum_probs=191.1
Q ss_pred EeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccC-CceeEEEecc-C
Q psy14906 127 VDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILT-DESLMEFIQT-W 204 (583)
Q Consensus 127 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~-~ 204 (583)
.+.|+.|++||+.+++..... .|...+.+++|+|++++|++++ ++.|++||+.+ ++.......+ .
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~------------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 84 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW------------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT 84 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE------------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC
T ss_pred CCcceeEEEEeCCCCceeeec------------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc
Confidence 356899999999998866443 6788999999999999999986 78999999998 8777666555 3
Q ss_pred CCeEEEEEecCCCCEEEEEc--CCCcEEE--EeCCCCeehhhhhhccccceEEEEEecCCCEEE-EEeCCCeEEEEEccC
Q psy14906 205 GPVTALSFRTDGPPMMVSGS--NTGHLTV--WNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLV-TSSPDNTLKLWIFDK 279 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~--~dg~i~v--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~~ 279 (583)
..+.+++|+|+++ +|++++ .++...+ |+..+++ ...+ .+...+..++|+|++++|+ +++.++.+++|+++.
T Consensus 85 ~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 85 ICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGT-PRLM--TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp CBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCC-CEEC--CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred ccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCc-eEEe--ecCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 6789999999999 777777 3344555 4555544 3333 2333588999999999877 777899999998876
Q ss_pred CCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee-CCCcEEEEEccc-cccceeeccchhhhhhhhhhcchhccccccC
Q psy14906 280 ADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA-GDSTLRIFNTKS-ETSNKNLGIASANRNNLKRKNRLEKMNEKFI 357 (583)
Q Consensus 280 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (583)
.. .....+..+...+.+++|+| +++.|+.++ .++.+++|++.. +.....+.
T Consensus 161 ~~---~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~----------------------- 213 (297)
T 2ojh_A 161 DS---GVETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERIT----------------------- 213 (297)
T ss_dssp TT---CCEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECC-----------------------
T ss_pred CC---CcceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEe-----------------------
Confidence 43 23455667778899999997 788777665 589999998762 22211110
Q ss_pred CCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC----
Q psy14906 358 LPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS---- 433 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---- 433 (583)
.+...+..++|+|++++|++++.+
T Consensus 214 ----------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 214 ----------------------------------------------------DSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp ----------------------------------------------------CCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred ----------------------------------------------------cCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 001347789999999999888765
Q ss_pred -------ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCC
Q psy14906 434 -------GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQ 481 (583)
Q Consensus 434 -------g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 481 (583)
+.|++||+.+++....... .+|...+.+++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDL---FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEE---EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeecc---CCCCcccccceECCCCCEEEEEEecc
Confidence 6799999988765433311 36788899999999999998887654
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=7.6e-25 Score=227.53 Aligned_cols=367 Identities=9% Similarity=-0.036 Sum_probs=231.9
Q ss_pred EEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCC---CeEEEEEecCCCCEEEEEcC---------CCcEEEEeC
Q psy14906 167 VLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWG---PVTALSFRTDGPPMMVSGSN---------TGHLTVWNL 234 (583)
Q Consensus 167 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~---------dg~i~vwd~ 234 (583)
.++|+|||+++++ +.|+.|++||+.+++....+.++.. .+.+++|||||+ .|+.++. ++.|++||+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEEC
Confidence 6899999965554 5689999999999998877776633 489999999999 7777665 689999999
Q ss_pred CCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCC-----------------CC
Q psy14906 235 EDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSA-----------------PP 297 (583)
Q Consensus 235 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-----------------~v 297 (583)
.+++.+... .....+..++|+|||+.|+.+. ++.|++|++.. +....+ +..++.. ..
T Consensus 98 ~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~--g~~~~l-~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 98 SNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG--DPPFQI-TFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT--SCCEEC-CCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCC--CCcEEE-ecCCCcCCeEcccccceeeeecccCc
Confidence 998874211 1125688899999999999886 78999996542 222111 1122221 12
Q ss_pred eeEEEeeCCCCEEEEeeCC-CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeeccccccccc
Q psy14906 298 NYIQFYGNSSDNILSAAGD-STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNN 376 (583)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (583)
.+++|+| ||++|++++.| +.+.+|.+....... . ........+....
T Consensus 172 ~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~-~-----------------~~~~~~~yp~~g~------------- 219 (719)
T 1z68_A 172 YALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQ-Y-----------------PRTINIPYPKAGA------------- 219 (719)
T ss_dssp CCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSS-S-----------------CEEEEEECCBTTS-------------
T ss_pred ccEEECC-CCCEEEEEEECCCCCceEEeeccCCCC-C-----------------ccceeecCCCCCC-------------
Confidence 5899998 89999988764 445555442211000 0 0000111111100
Q ss_pred EEEEecCCceEEEeecCccccc-ceeeecccccccCCCCceEEEEccCCcEEEEEecC----ceEEEEE----cccCccc
Q psy14906 377 IAAIHTGKNKVSLWSFYKSKMD-DMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS----GHVDRFN----IQSGAHR 447 (583)
Q Consensus 377 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d----~~~~~~~ 447 (583)
......+.+||....... ............+...+..++|+||++++++.... ..|.+|| ..+++..
T Consensus 220 ----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 220 ----KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp ----CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred ----CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 012236788888776532 00111101112234568899999998877774432 3588999 7777665
Q ss_pred cccCCCCCCCcccCee-----EEEEeCCCcEEEE--eecCC--cEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEE
Q psy14906 448 GSYGHDNQPGHVGGVR-----GVVSDNLNQIVIS--GGNDQ--TVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLA 518 (583)
Q Consensus 448 ~~~~~~~~~~h~~~v~-----~~~~s~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 518 (583)
..+.. ....|...+. .+.|+|||+.++. ...+| .|.+||+.++ +......+...+..+.++ +++.|+
T Consensus 296 ~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 296 KTQEH-IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp GGGEE-EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEECSCSSSCEEEEEEE-CSSEEE
T ss_pred EEEec-ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEecccCceEEEEEEEE-eCCEEE
Confidence 54410 0014566666 8899999996554 44555 4666777665 433333334467777777 888777
Q ss_pred EEeCC-----ceEEEEEccc--cc-eEEeec----ccccceeeEEecCCCcEEEE-EeCC--CeEEEEeCCCcccccc
Q psy14906 519 VCLDD-----FTVNIIDIDT--CT-IIRKLS----GHMGQLTDADFSPDSRWLIT-ASMD--CTIRVWDIPSSQLIDC 581 (583)
Q Consensus 519 ~~~~d-----g~i~i~d~~~--~~-~~~~~~----~h~~~v~~l~~s~d~~~l~s-~~~d--~~i~vw~~~~~~~~~~ 581 (583)
..+.+ +..++|.+.. +. ....+. +|...+..+.|+||+++++. ++.+ ..+.+||+.++++++.
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~ 449 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKI 449 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEE
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEE
Confidence 66654 7888888764 42 123333 36677889999999988774 3333 4689999988876543
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=225.38 Aligned_cols=328 Identities=9% Similarity=0.006 Sum_probs=218.6
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCc---ceEEEeeCCCCCEEEEEec---------C
Q psy14906 116 LILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNS---CVNVLEPSPVVDIIGVGLS---------N 183 (583)
Q Consensus 116 ~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~---------d 183 (583)
.++|||+++++ +.|++|++||+.+++....+. .+.. .+.+++|||||++|++++. +
T Consensus 22 ~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 22 NWISGQEYLHQ-SADNNIVLYNIETGQSYTILS-----------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp EESSSSEEEEE-CTTSCEEEEESSSCCEEEEEC-----------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred EECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEc-----------cccccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence 35899976655 469999999999998776664 3322 4889999999999999876 6
Q ss_pred CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccce------------
Q psy14906 184 KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVV------------ 251 (583)
Q Consensus 184 ~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v------------ 251 (583)
+.|++||+.+++.+..... ...+..++|+|||+ .|+.+. ++.|++||+.+++.......++...+
T Consensus 90 ~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee 166 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE 166 (719)
T ss_dssp EEEEEEETTTTEECCSSCC-CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred eEEEEEECCCCccccceec-CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence 8999999998876311111 25688999999999 566664 78999999988766443322333322
Q ss_pred -----EEEEEecCCCEEEEEeCCC----------------------------------eEEEEEccCCCCCceee-----
Q psy14906 252 -----TGAHFLYNEPLLVTSSPDN----------------------------------TLKLWIFDKADGNGRLL----- 287 (583)
Q Consensus 252 -----~~~~~~~~~~~l~s~~~d~----------------------------------~i~~w~~~~~~~~~~~~----- 287 (583)
.+++|+|||++|++++.|. .+++||++. +...
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~----~~~~~~~~~ 242 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY----PAYVGPQEV 242 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC----HHHHCCEEC
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC----CCccceeEc
Confidence 4899999999999987652 677886642 2211
Q ss_pred ---EEeccCCCCCeeEEEeeCCCCEEEEeeCC----CcEEEEE----ccccccceeeccchhhhhhhhhhcchhcccccc
Q psy14906 288 ---RIREGHSAPPNYIQFYGNSSDNILSAAGD----STLRIFN----TKSETSNKNLGIASANRNNLKRKNRLEKMNEKF 356 (583)
Q Consensus 288 ---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (583)
..+.+|...+..++|+| |++.+++.... ..|.+|| +.+++....+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~--------------------- 300 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH--------------------- 300 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE---------------------
T ss_pred cCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec---------------------
Confidence 11345777889999998 67766664322 2477888 655543221100
Q ss_pred CCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCce-----EEEEccCCcEEEE--
Q psy14906 357 ILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPT-----CVYITHCGNFVLI-- 429 (583)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~-- 429 (583)
....+...+. .+.|+|||+.++.
T Consensus 301 --------------------------------------------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 301 --------------------------------------------------IEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp --------------------------------------------------EEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred --------------------------------------------------ccccCCceEccccCCccEECCCCCeEEEEE
Confidence 0000012233 6789999996655
Q ss_pred EecCc--eEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecC-----CcEEEEEccCCCCC-ceEEee-
Q psy14906 430 GYSSG--HVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGND-----QTVKVWHFKQTGKP-PLRSIK- 500 (583)
Q Consensus 430 ~~~dg--~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~-~~~~~~- 500 (583)
...+| .|++||+.+++ ...+ ..+...+..+.++ +++.|+..+.+ +..++|.+...... ....+.
T Consensus 331 ~~~~g~~~l~~~~~~~~~-~~~l-----t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~ 403 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVEN-AIQI-----TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC 403 (719)
T ss_dssp ECTTSCEEEEEESSCSTT-CEEC-----SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST
T ss_pred EccCCceEEEEEECCCCc-eEec-----ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC
Confidence 33444 57777877665 3334 3556668888877 77777666554 88999988752112 123332
Q ss_pred ----ccCCeeeEEeccCCcEEEEEe-CC--ceEEEEEccccceEEeec
Q psy14906 501 ----LDNGISFFRTHQESSMLAVCL-DD--FTVNIIDIDTCTIIRKLS 541 (583)
Q Consensus 501 ----~~~~v~~~~~s~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~ 541 (583)
+...+..+.|+|++++++... .. ..+++||+.+++.+..+.
T Consensus 404 ~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 404 HLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp TTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 234677899999999877543 22 478899998887654443
No 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.93 E-value=1.7e-23 Score=217.01 Aligned_cols=363 Identities=10% Similarity=-0.013 Sum_probs=233.1
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCc-----ceEEEeeCCCCCEEEEEecC--------
Q psy14906 117 ILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNS-----CVNVLEPSPVVDIIGVGLSN-------- 183 (583)
Q Consensus 117 is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~d-------- 183 (583)
.+|||++++++ |++|++||+.+++....+. .|.. ....++|||||++|+.++.+
T Consensus 24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLE-----------NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp ECSSSEEEEEE--TTEEEEEETTTCCEEEEEC-----------TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ECCCCcEEEEc--CCcEEEEECCCCceEEEEe-----------chhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 48999999986 9999999999999876665 3332 23447889999999998876
Q ss_pred -CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccce-----------
Q psy14906 184 -KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVV----------- 251 (583)
Q Consensus 184 -~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v----------- 251 (583)
+.+.+||+.+++.. .+..+...+...+|||||+ .|+.+ .++.|++||+.+++..+....++...+
T Consensus 91 ~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred ceEEEEEECCCCcEE-EcccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 56779999988765 3666668899999999999 56655 468999999988765433212333222
Q ss_pred ------EEEEEecCCCEEEEEeCCCe-EEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEc
Q psy14906 252 ------TGAHFLYNEPLLVTSSPDNT-LKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324 (583)
Q Consensus 252 ------~~~~~~~~~~~l~s~~~d~~-i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 324 (583)
..+.|||||+.|+.++.|.. +.+|++....... .+...+..+.|.+ .|.. .....|++||+
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~-~G~~----~~~~~l~v~d~ 235 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPK-AGAV----NPTVKFFVVNT 235 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCB-TTSC----CCEEEEEEEET
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCC-CcCc----CCeeEEEEEEC
Confidence 35899999999998876544 8888664321110 2334445566654 3432 12236888998
Q ss_pred cc---cccce--eeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccc
Q psy14906 325 KS---ETSNK--NLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDD 399 (583)
Q Consensus 325 ~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (583)
.+ +.... .+...
T Consensus 236 ~~~~~~~~~~~~~l~~~--------------------------------------------------------------- 252 (740)
T 4a5s_A 236 DSLSSVTNATSIQITAP--------------------------------------------------------------- 252 (740)
T ss_dssp TSCCSSSCCCEEEECCC---------------------------------------------------------------
T ss_pred CCCCCCCcceEEEecCC---------------------------------------------------------------
Confidence 87 53211 11000
Q ss_pred eeeecccccccCCCCceEEEEccCCcEEEEEec----CceEEEEEcccCc----cccccCCCCCCCcccCee-----EEE
Q psy14906 400 MFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS----SGHVDRFNIQSGA----HRGSYGHDNQPGHVGGVR-----GVV 466 (583)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~~~~~~~h~~~v~-----~~~ 466 (583)
.....+...+..++|+|||+.++.... +..|++||+.+++ +...... ....|...+. .++
T Consensus 253 ------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l-~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 253 ------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH-IEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp ------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE-EEECSSSCSSSSSCCCCE
T ss_pred ------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe-eeccCCceEccCcCCCce
Confidence 000011245788999999997766543 3479999999887 2221100 0023554444 789
Q ss_pred EeCCCcEEE-Eee-cCC--cEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCC-------ceEEEEEccccc
Q psy14906 467 SDNLNQIVI-SGG-NDQ--TVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDD-------FTVNIIDIDTCT 535 (583)
Q Consensus 467 ~s~~~~~l~-s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------g~i~i~d~~~~~ 535 (583)
|+|||+.|+ ..+ .+| .|++||+.++ ...........+..+.. +|++.|+..+.. ..|+..++..++
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~--~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~ 402 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKK--DCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYT 402 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCS--SCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCC--ceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence 999999876 555 344 5888888776 55554444455655432 456655544433 345555555554
Q ss_pred eEEeecc----cccceeeEEecCCCcEEEEEeCC---CeEEEEeCCCccccc
Q psy14906 536 IIRKLSG----HMGQLTDADFSPDSRWLITASMD---CTIRVWDIPSSQLID 580 (583)
Q Consensus 536 ~~~~~~~----h~~~v~~l~~s~d~~~l~s~~~d---~~i~vw~~~~~~~~~ 580 (583)
....+.. .........||||+++++..... ..+.+++..+++.+.
T Consensus 403 ~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 403 KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp EEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred cceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 4323432 34568899999999987654433 368888888776544
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=7.7e-24 Score=199.99 Aligned_cols=302 Identities=8% Similarity=0.032 Sum_probs=206.7
Q ss_pred EEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccC-CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhh
Q psy14906 167 VLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTW-GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKK 245 (583)
Q Consensus 167 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 245 (583)
.++++++++++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.+++++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788899999999999999999999999988887652 26889999999985556777789999999999988766622
Q ss_pred cc-----ccceEEEEEecCCCEEEEEeCC------------CeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCC
Q psy14906 246 AH-----RKVVTGAHFLYNEPLLVTSSPD------------NTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSD 308 (583)
Q Consensus 246 ~~-----~~~v~~~~~~~~~~~l~s~~~d------------~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 308 (583)
.+ ...+..++|+|+|++|++++.+ +.|.+||+.... ..+.+..... ...+.+++|+| +++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~-~~~~~~~~~s~-dg~ 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPVRTFPM-PRQVYLMRAAD-DGS 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCSEEEEC-CSSCCCEEECT-TSC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-ccceeeeccC-CCcccceeECC-CCc
Confidence 22 2347889999999999998865 899999875311 1222333333 34688999997 777
Q ss_pred EEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEE
Q psy14906 309 NILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVS 388 (583)
Q Consensus 309 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 388 (583)
+++++. .|.+||+.+++....+........ ...++ ..+.
T Consensus 161 -l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~--------------~~~~~------------------------~~~~ 199 (349)
T 1jmx_B 161 -LYVAGP--DIYKMDVKTGKYTVALPLRNWNRK--------------GYSAP------------------------DVLY 199 (349)
T ss_dssp -EEEESS--SEEEECTTTCCEEEEECSTTCCCT--------------TBCCC------------------------BCCC
T ss_pred -EEEccC--cEEEEeCCCCceeccccccccCCc--------------cccCc------------------------ccee
Confidence 555543 499999988876554421100000 00000 0000
Q ss_pred EeecCcccccceeeecccccccCCCCceEEEEccCCc-----------EEEEEecCceEEEEEcccCccccccCCCCCCC
Q psy14906 389 LWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGN-----------FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPG 457 (583)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 457 (583)
+|....... .. .....+++++++. ++.....++.+.+++.. .
T Consensus 200 ~~~~~~~~~--~~-----------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 252 (349)
T 1jmx_B 200 FWPHQSPRH--EF-----------SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------D 252 (349)
T ss_dssp CCCCCCTTC--EE-----------EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE--------------E
T ss_pred eecCCCcce--eE-----------EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc--------------c
Confidence 111100000 00 0123455554432 22233344555555542 2
Q ss_pred cccCeeEEEEeC-CCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccce
Q psy14906 458 HVGGVRGVVSDN-LNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI 536 (583)
Q Consensus 458 h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 536 (583)
+...+.+++|+| ++++++++ ++.|.+||+.++ +.+..+.....+.+++|+|+|++|++++.++.|++||+++++.
T Consensus 253 ~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 253 LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR--KLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT--EEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC--eEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 445688999999 99998888 789999999988 7777777777789999999999999888899999999999998
Q ss_pred EEeeccc
Q psy14906 537 IRKLSGH 543 (583)
Q Consensus 537 ~~~~~~h 543 (583)
+..++.+
T Consensus 329 ~~~~~~~ 335 (349)
T 1jmx_B 329 VKNIKLP 335 (349)
T ss_dssp EEEEECS
T ss_pred eeeeecC
Confidence 8877654
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=2.8e-23 Score=195.66 Aligned_cols=285 Identities=15% Similarity=0.164 Sum_probs=189.1
Q ss_pred CCcEEEEeC--CCCeehhhhhhccccceEEEEEecCCCEEEEEeC---CCeEEEEEccCCCCCceeeEEeccCCCCCeeE
Q psy14906 226 TGHLTVWNL--EDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP---DNTLKLWIFDKADGNGRLLRIREGHSAPPNYI 300 (583)
Q Consensus 226 dg~i~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 300 (583)
++.|.+|++ .+++........+...+..++|+|+|+ |++++. ++.|.+|+++. +..+.+..+..+...+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG--QTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET--TEEEEEEEEEEESCCCSEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecC--CcEEEeeeeecCCCCCEEE
Confidence 455666665 455544321134567788899999999 555544 68999998753 2344555555677788999
Q ss_pred EEeeCCCCEEEEee-CCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEE
Q psy14906 301 QFYGNSSDNILSAA-GDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAA 379 (583)
Q Consensus 301 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (583)
+|+| ++++|++++ .++.+.+|++........+..
T Consensus 92 a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~-------------------------------------------- 126 (347)
T 3hfq_A 92 AVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDT-------------------------------------------- 126 (347)
T ss_dssp EEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEE--------------------------------------------
T ss_pred EECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecce--------------------------------------------
Confidence 9997 898888887 679999999863221111100
Q ss_pred EecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcc-cCccccccCCCCCCCc
Q psy14906 380 IHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQ-SGAHRGSYGHDNQPGH 458 (583)
Q Consensus 380 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~h 458 (583)
...... .+. .......+.+++|+|+|+++++...++.|.+|++. +++........ ...
T Consensus 127 ----------~~~~~~-------~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~--~~~ 185 (347)
T 3hfq_A 127 ----------VQHSGH-------GPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT--MEA 185 (347)
T ss_dssp ----------EECCCC-------CSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE--CCT
T ss_pred ----------eecCCC-------CCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE--cCC
Confidence 000000 000 00011457889999999966666778899999998 45432211000 122
Q ss_pred ccCeeEEEEeCCCcEEEE-eecCCcEEEEEccCCCCCc--eEEeec-c------CCeeeEEeccCCcEEE-EEeCCceEE
Q psy14906 459 VGGVRGVVSDNLNQIVIS-GGNDQTVKVWHFKQTGKPP--LRSIKL-D------NGISFFRTHQESSMLA-VCLDDFTVN 527 (583)
Q Consensus 459 ~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~--~~~~~~-~------~~v~~~~~s~~~~~l~-~~~~dg~i~ 527 (583)
...+..++|+|||++++. ...++.+.+|++.....+. +..+.. . ..+..++|+|||++|+ +...++.|.
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA 265 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence 346788999999996655 5678899999998521122 222221 1 3478899999999875 455689999
Q ss_pred EEEccc---cceEEeecccccceeeEEecCCCcEEEEEeCC-CeEEEE--eCCCcccc
Q psy14906 528 IIDIDT---CTIIRKLSGHMGQLTDADFSPDSRWLITASMD-CTIRVW--DIPSSQLI 579 (583)
Q Consensus 528 i~d~~~---~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d-~~i~vw--~~~~~~~~ 579 (583)
+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+| |.++|++.
T Consensus 266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999973 25556666667778999999999998888765 899999 55667664
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=1.4e-23 Score=212.08 Aligned_cols=270 Identities=8% Similarity=0.022 Sum_probs=200.3
Q ss_pred CCCeEEEEEecCCCCEEEEEcC-CCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeC---CCeEEEEEccC
Q psy14906 204 WGPVTALSFRTDGPPMMVSGSN-TGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP---DNTLKLWIFDK 279 (583)
Q Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~w~~~~ 279 (583)
..+|++++|+|||+ .|+.++. ||+++||++.+++..... ..+...+..++|+|| +++++++. +...++|.++.
T Consensus 21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt-~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETVKLN-REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEEECC-SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcEeee-cccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 45899999999999 6777665 999999999776655443 334468999999999 77777765 56678887765
Q ss_pred --CCCCceeeEEeccCCCCCeeEEEeeCCCC-EEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhcccccc
Q psy14906 280 --ADGNGRLLRIREGHSAPPNYIQFYGNSSD-NILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKF 356 (583)
Q Consensus 280 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (583)
.. ... .+... ..+...+|+| +++ .+++.+.++.+.+||+.+++..+...
T Consensus 98 ~~~g-~~~---~l~~~-~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---------------------- 149 (582)
T 3o4h_A 98 SRPG-EEQ---RLEAV-KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELAR---------------------- 149 (582)
T ss_dssp TSTT-CCE---ECTTS-CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEE----------------------
T ss_pred cCCC-ccc---cccCC-CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeec----------------------
Confidence 32 112 22222 2345678887 554 44455555566699998765322110
Q ss_pred CCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC---
Q psy14906 357 ILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS--- 433 (583)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--- 433 (583)
....+++|+|||++++.++.+
T Consensus 150 --------------------------------------------------------~~~~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 150 --------------------------------------------------------LPGFGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp --------------------------------------------------------ESSCEEEEEEETTEEEEEEEEETT
T ss_pred --------------------------------------------------------CCCceEEECCCCCEEEEEEEcCCC
Confidence 011688999999999988877
Q ss_pred -ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCC--cEEEEEccCCCCCceEEee-ccCCeeeEE
Q psy14906 434 -GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQ--TVKVWHFKQTGKPPLRSIK-LDNGISFFR 509 (583)
Q Consensus 434 -g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~-~~~~v~~~~ 509 (583)
+.|++||+.+++.. .+ ..|...+..++|+|||+.|+++..++ .|++||+.++ +.. .+. +...+..++
T Consensus 174 ~~~i~~~d~~~g~~~-~l-----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~--~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR-VF-----DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG--SVE-DLELPSKDFSSYR 244 (582)
T ss_dssp EEEEEEEETTTCCCE-EE-----CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC--CEE-ECCCSCSHHHHHC
T ss_pred CeEEEEEcCCCCCce-Ee-----ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC--cEE-EccCCCcChhhhh
Confidence 78999999888765 44 57888899999999999999888888 8999999987 555 333 334566666
Q ss_pred --------eccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCC---eEEEEeCCC
Q psy14906 510 --------THQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDC---TIRVWDIPS 575 (583)
Q Consensus 510 --------~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~---~i~vw~~~~ 575 (583)
|+|||.++++++.++.+++|++ ++... .+.+.|.+++|+ |++++++++.+. .+.+|+..+
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999999999999 66554 344678999999 999999888775 477777653
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=1.8e-23 Score=197.39 Aligned_cols=279 Identities=7% Similarity=-0.000 Sum_probs=192.5
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEE-EEeCCCeEEEEEccCCCCCceee
Q psy14906 209 ALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLV-TSSPDNTLKLWIFDKADGNGRLL 287 (583)
Q Consensus 209 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~~~~~~~~~~ 287 (583)
.+++++++. ++++++.++.|.+||+.+++.+..+..+....+..++|+|++++++ +...++.|.+||++ .++..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~----t~~~~ 78 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD----TCKNT 78 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT----TTEEE
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC----CCcEE
Confidence 346777777 8999999999999999999888777322222578899999998655 55568999999764 34555
Q ss_pred EEeccC------CCCCeeEEEeeCCCCEEEEeeCC------------CcEEEEEccccccceeeccchhhhhhhhhhcch
Q psy14906 288 RIREGH------SAPPNYIQFYGNSSDNILSAAGD------------STLRIFNTKSETSNKNLGIASANRNNLKRKNRL 349 (583)
Q Consensus 288 ~~~~~~------~~~v~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (583)
..+... ...+..++|+| +++++++++.+ +.|.+||+.+++..+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------- 143 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT-------------- 143 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--------------
T ss_pred EEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--------------
Confidence 444422 22378999997 89999988865 7888888876543221100
Q ss_pred hccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEE
Q psy14906 350 EKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLI 429 (583)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 429 (583)
+ .....+.+++|+|+|+ +++
T Consensus 144 ----------------------------------------~-------------------~~~~~~~~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 144 ----------------------------------------F-------------------PMPRQVYLMRAADDGS-LYV 163 (349)
T ss_dssp ----------------------------------------E-------------------ECCSSCCCEEECTTSC-EEE
T ss_pred ----------------------------------------c-------------------cCCCcccceeECCCCc-EEE
Confidence 0 0013477899999999 665
Q ss_pred EecCceEEEEEcccCccccccCCCCCCCc-------------------ccCeeEEEEeCCCcEE-----------EEeec
Q psy14906 430 GYSSGHVDRFNIQSGAHRGSYGHDNQPGH-------------------VGGVRGVVSDNLNQIV-----------ISGGN 479 (583)
Q Consensus 430 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~h-------------------~~~v~~~~~s~~~~~l-----------~s~~~ 479 (583)
++. .|.+||..+++....+.......+ ......+++++++... .....
T Consensus 164 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred ccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 543 499999998887766532100000 0034456666554211 12223
Q ss_pred CCcEEEEEccCCCCCceEEeeccCCeeeEEecc-CCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcE
Q psy14906 480 DQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ-ESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRW 558 (583)
Q Consensus 480 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 558 (583)
++.+++|++. .....+..++++| +|++++++ ++.|.+||+.+++.+..+.. ...+.+++|+||+++
T Consensus 242 ~~~~~~~~~~----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 242 TGKTHTQEFA----------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDK 308 (349)
T ss_dssp TCCEEEEEEE----------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSC
T ss_pred CCcEEecccc----------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCE
Confidence 3344444432 2345688999999 99999988 88999999999998877763 345789999999999
Q ss_pred EEEEeCCCeEEEEeCCCccccccc
Q psy14906 559 LITASMDCTIRVWDIPSSQLIDCF 582 (583)
Q Consensus 559 l~s~~~d~~i~vw~~~~~~~~~~~ 582 (583)
|++++.++.|++||+.+++.+..+
T Consensus 309 l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEEecCCCeEEEEeccccceeeee
Confidence 988888999999999999888765
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=9.8e-22 Score=186.18 Aligned_cols=303 Identities=8% Similarity=0.013 Sum_probs=195.1
Q ss_pred CCCEEEEEe----CCCcEEEEEcC--CCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC----CeEEEE
Q psy14906 120 FGPHLISVD----EESNVKVWDIK--AEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN----KKIILH 189 (583)
Q Consensus 120 ~~~~l~s~~----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~iw 189 (583)
...+++.|+ .++.|.+|+++ +++...... .+......++|+|||++|++++.+ +.|.+|
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-----------~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~ 80 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-----------AEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAF 80 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-----------EECSCCCSEEECTTSSEEEEEECCSSTTCEEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-----------ccCCCCceEEECCCCCEEEEEEccCCCCCcEEEE
Confidence 344556653 35689999774 455443332 235566779999999999998875 799999
Q ss_pred EccC--Cce--eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhh-------------hccccceE
Q psy14906 190 NILT--DES--LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIK-------------KAHRKVVT 252 (583)
Q Consensus 190 ~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~~v~ 252 (583)
++.. ++. +.....+......+++ +++.++++...++.+.+|++.....+..+. ..+...+.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (361)
T 3scy_A 81 AFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH 158 (361)
T ss_dssp EEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred EEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence 9875 432 3334444456777887 777445555568899999997543332220 11223468
Q ss_pred EEEEecCCCEEEEEe-CCCeEEEEEccCCCC----C-cee----eEEeccCCCCCeeEEEeeCCCCEEEEee-CCCcEEE
Q psy14906 253 GAHFLYNEPLLVTSS-PDNTLKLWIFDKADG----N-GRL----LRIREGHSAPPNYIQFYGNSSDNILSAA-GDSTLRI 321 (583)
Q Consensus 253 ~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~----~-~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i 321 (583)
+++|+|+|+++++++ .++.+.+|+++.... . ... ......+...+..++|+| +++++++++ .++.|.+
T Consensus 159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v 237 (361)
T 3scy_A 159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIA 237 (361)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEE
Confidence 899999999766655 478999998875432 1 111 112223345567899997 788777666 5788888
Q ss_pred EEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccccccee
Q psy14906 322 FNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMF 401 (583)
Q Consensus 322 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 401 (583)
|++.++.....
T Consensus 238 ~~~~~g~~~~~--------------------------------------------------------------------- 248 (361)
T 3scy_A 238 FRYADGMLDEI--------------------------------------------------------------------- 248 (361)
T ss_dssp EEEETTEEEEE---------------------------------------------------------------------
T ss_pred EEecCCceEEe---------------------------------------------------------------------
Confidence 88764321000
Q ss_pred eecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec--
Q psy14906 402 LVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN-- 479 (583)
Q Consensus 402 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 479 (583)
..+ ... ..+......++|+|||++|+++..
T Consensus 249 --------------~~~-----------------------------~~~-----~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 249 --------------QTV-----------------------------AAD-----TVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp --------------EEE-----------------------------ESC-----SSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred --------------EEE-----------------------------ecC-----CCCCCCcccEEECCCCCEEEEECCCC
Confidence 000 000 233344578899999988866554
Q ss_pred CCcEEEEEcc--CCCCCceEEeeccCCeeeEEeccCCcEEEEEe-CCceEEEEEc--cccceEEee-cccccceeeEEec
Q psy14906 480 DQTVKVWHFK--QTGKPPLRSIKLDNGISFFRTHQESSMLAVCL-DDFTVNIIDI--DTCTIIRKL-SGHMGQLTDADFS 553 (583)
Q Consensus 480 dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~-~~h~~~v~~l~~s 553 (583)
++.|.+|++. ++....+..+.....+..++|+|||++|++++ .++.|.+|++ +++++.... ..+...+.|+.|.
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 4789999986 33112334444445788999999999988887 5789999654 567665443 2344678888885
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=1.1e-23 Score=212.86 Aligned_cols=268 Identities=7% Similarity=-0.065 Sum_probs=193.3
Q ss_pred CcceEEEeeCCCCCEEEEEec-CCeEEEEEccCCceeEEEeccC-CCeEEEEEecCCCCEEEEEcC---CCcEEEEeCCC
Q psy14906 162 NSCVNVLEPSPVVDIIGVGLS-NKKIILHNILTDESLMEFIQTW-GPVTALSFRTDGPPMMVSGSN---TGHLTVWNLED 236 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~ 236 (583)
..+|.+++|+|||+.||+++. +|++.||++.+++. ..+..+. ..+..++|+|| + ++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-e-EEEEeccCCCCcceEEEEEec
Confidence 467999999999999999887 99999999976655 4455444 68999999999 5 7887765 45556654432
Q ss_pred ---CeehhhhhhccccceEEEEEecCCC--EEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEE
Q psy14906 237 ---RQVENQIKKAHRKVVTGAHFLYNEP--LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNIL 311 (583)
Q Consensus 237 ---~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 311 (583)
+... .+.. ...+...+|+|+++ .+++++ ++.+.+|+++. ++...... +.. .+++|+| ||++|+
T Consensus 98 ~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~-~~~~~l~d~~~----g~~~~l~~-~~~--~~~~~sp-DG~~la 165 (582)
T 3o4h_A 98 SRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGAT-EDRVALYALDG----GGLRELAR-LPG--FGFVSDI-RGDLIA 165 (582)
T ss_dssp TSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEEC-SSCEEEEEEET----TEEEEEEE-ESS--CEEEEEE-ETTEEE
T ss_pred cCCCccc-cccC--CCCceeeeeCCCCCeEEEEecC-CCCceEEEccC----CcEEEeec-CCC--ceEEECC-CCCEEE
Confidence 2222 2311 22334668888886 344444 44556997752 33333322 222 7899998 899999
Q ss_pred EeeCC----CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceE
Q psy14906 312 SAAGD----STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKV 387 (583)
Q Consensus 312 ~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 387 (583)
+++.+ +.|++||+.+++.....
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~~l~------------------------------------------------------ 191 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLRVFD------------------------------------------------------ 191 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCEEEC------------------------------------------------------
T ss_pred EEEEcCCCCeEEEEEcCCCCCceEee------------------------------------------------------
Confidence 88776 77999998776542111
Q ss_pred EEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCc--eEEEEEcccCccccccCCCCCCCcccCeeEE
Q psy14906 388 SLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSG--HVDRFNIQSGAHRGSYGHDNQPGHVGGVRGV 465 (583)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~ 465 (583)
.+...+..++|+|||++|+++..++ .|++||+.+++.. .+ ..|...+..+
T Consensus 192 ----------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-----~~~~~~~~~~ 243 (582)
T 3o4h_A 192 ----------------------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-----ELPSKDFSSY 243 (582)
T ss_dssp ----------------------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-----CCSCSHHHHH
T ss_pred ----------------------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-----cCCCcChhhh
Confidence 0114568899999999999888888 8999999988877 55 5777777777
Q ss_pred E--------EeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCc---eEEEEEccc
Q psy14906 466 V--------SDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDF---TVNIIDIDT 533 (583)
Q Consensus 466 ~--------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~ 533 (583)
+ |+|||.++++++.|+.+++|++ + +... .....+.+++|+ +++++++++.+. .+++||..+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g--~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--G--ERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET--T--EEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE--C--Ceec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 7 9999999999999999999999 4 4443 233578899999 999998887764 477777654
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=9.2e-22 Score=186.37 Aligned_cols=292 Identities=16% Similarity=0.212 Sum_probs=192.9
Q ss_pred EEEEEc----CCCcEEEEeC--CCCeehhhhhhccccceEEEEEecCCCEEEEEeCC----CeEEEEEccCCCCCceeeE
Q psy14906 219 MMVSGS----NTGHLTVWNL--EDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPD----NTLKLWIFDKADGNGRLLR 288 (583)
Q Consensus 219 ~l~s~~----~dg~i~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~w~~~~~~~~~~~~~ 288 (583)
.++.|+ .++.|.+|.+ .+++..... ..+...+..++|+|++++|++++.+ +.+.+|+++..++..+.+.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~-~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLS-DAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEE-EEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEee-cccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 455653 3567888876 445543333 2266778889999999999999876 7999998886544444555
Q ss_pred EeccCCCCCeeEEEeeCCCCEEEEee-CCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeee
Q psy14906 289 IREGHSAPPNYIQFYGNSSDNILSAA-GDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFG 367 (583)
Q Consensus 289 ~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (583)
....+...+..+++ ++++|++++ .++.+.+|++........+...
T Consensus 94 ~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------------------------------- 139 (361)
T 3scy_A 94 TQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDV------------------------------- 139 (361)
T ss_dssp EEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE-------------------------------
T ss_pred EeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCccccee-------------------------------
Confidence 55545556666766 577777666 5789999999754332211000
Q ss_pred cccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe-cCceEEEEEcccCcc
Q psy14906 368 LAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY-SSGHVDRFNIQSGAH 446 (583)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~ 446 (583)
....... + .........+.+++|+|+|++++++. .++.|.+|++.....
T Consensus 140 ----------------------~~~~g~~-------~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 140 ----------------------IEFKGSG-------P-DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp ----------------------EECCCCC-------S-CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred ----------------------EEccCCC-------C-CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence 0000000 0 00000113468899999999776655 578999999875432
Q ss_pred ------c------cccCCCCCCCcccCeeEEEEeCCCcEEEEee-cCCcEEEEEccCCCCCceEEeec----cCCeeeEE
Q psy14906 447 ------R------GSYGHDNQPGHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQTGKPPLRSIKL----DNGISFFR 509 (583)
Q Consensus 447 ------~------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~ 509 (583)
+ .... ..+...+..++|+||++++++++ .++.|.+|++.++....+..+.. ...+..++
T Consensus 190 ~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 190 ADNKEKFLTKGTPEAFK----VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH 265 (361)
T ss_dssp TTTCCCCEEEEEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred cccccceeeccccccee----cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence 1 1111 23455678999999999887776 68999999998651111222221 13467999
Q ss_pred eccCCcEEEEEeCC--ceEEEEEcc--ccc--eEEeecccccceeeEEecCCCcEEEEEe-CCCeEEEE--eCCCccccc
Q psy14906 510 THQESSMLAVCLDD--FTVNIIDID--TCT--IIRKLSGHMGQLTDADFSPDSRWLITAS-MDCTIRVW--DIPSSQLID 580 (583)
Q Consensus 510 ~s~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~d~~i~vw--~~~~~~~~~ 580 (583)
|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+| |..+|++..
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 99999998776654 899999995 444 4444544 55788999999999988887 67899996 555776643
No 159
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=7.7e-22 Score=185.84 Aligned_cols=275 Identities=9% Similarity=0.058 Sum_probs=179.9
Q ss_pred CCcEEEEEcC--CCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec---CCeEEEEEccCCc--eeEEEec
Q psy14906 130 ESNVKVWDIK--AEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS---NKKIILHNILTDE--SLMEFIQ 202 (583)
Q Consensus 130 dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~--~~~~~~~ 202 (583)
++.|.+|+++ +++....... .+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~----------~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~ 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLL----------AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEE----------EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeee----------eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec
Confidence 4567777765 4544331111 4456677899999999 555544 5899999998765 4444455
Q ss_pred cCCCeEEEEEecCCCCEEEEEc-CCCcEEEEeCCC-C--eehhhhhh-c-------cccceEEEEEecCCCEEEEEeCCC
Q psy14906 203 TWGPVTALSFRTDGPPMMVSGS-NTGHLTVWNLED-R--QVENQIKK-A-------HRKVVTGAHFLYNEPLLVTSSPDN 270 (583)
Q Consensus 203 ~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~--~~~~~~~~-~-------~~~~v~~~~~~~~~~~l~s~~~d~ 270 (583)
+...+..++|+|+|+ +|++++ .++.+.+|++.. + +.+..+.. + +...+.+++|+|+|+++++...++
T Consensus 84 ~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred CCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 667899999999999 566555 789999999963 2 22222210 0 123488899999999666666788
Q ss_pred eEEEEEccCCCCCceeeEEeccC-CCCCeeEEEeeCCCCEEEE-eeCCCcEEEEEccc--cccceeeccchhhhhhhhhh
Q psy14906 271 TLKLWIFDKADGNGRLLRIREGH-SAPPNYIQFYGNSSDNILS-AAGDSTLRIFNTKS--ETSNKNLGIASANRNNLKRK 346 (583)
Q Consensus 271 ~i~~w~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~ 346 (583)
.|.+|+++. .+.......+..+ ...+..++|+| +++++++ ...++.+.+|++.. ++.....
T Consensus 163 ~v~~~~~~~-~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~------------- 227 (347)
T 3hfq_A 163 KVYVYNVSD-AGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLG------------- 227 (347)
T ss_dssp EEEEEEECT-TSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEE-------------
T ss_pred EEEEEEECC-CCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEee-------------
Confidence 999998762 2222333322222 23577899998 7886665 55688999999874 2211000
Q ss_pred cchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcE
Q psy14906 347 NRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNF 426 (583)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 426 (583)
..... +... .....+..++|+|||++
T Consensus 228 ------------------------------------------~~~~~----------~~~~--~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 228 ------------------------------------------IVKTI----------PADY--TAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp ------------------------------------------EEESS----------CTTC--CSCCEEEEEEECTTSCE
T ss_pred ------------------------------------------eeeec----------CCCC--CCCCcceeEEECCCCCE
Confidence 00000 0000 00134778999999998
Q ss_pred EEE-EecCceEEEEEcccC---ccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec-CCcEEEEEccC
Q psy14906 427 VLI-GYSSGHVDRFNIQSG---AHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN-DQTVKVWHFKQ 490 (583)
Q Consensus 427 l~~-~~~dg~i~i~d~~~~---~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~ 490 (583)
|++ ...++.|.+|++... +.+..+ ..+...+..++|+||+++|++++. ++.|.+|+++.
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQI-----STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEE-----ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEE-----ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 755 456899999999732 233333 345567899999999998888775 48999996643
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.91 E-value=2.1e-22 Score=193.03 Aligned_cols=319 Identities=8% Similarity=-0.007 Sum_probs=195.8
Q ss_pred EEEEccCCceeEEEeccCCCeEE-----EEEecCCCCEEEEEcC-CC--cEEEEeCCCCeehhhhhhccccceEEEEEec
Q psy14906 187 ILHNILTDESLMEFIQTWGPVTA-----LSFRTDGPPMMVSGSN-TG--HLTVWNLEDRQVENQIKKAHRKVVTGAHFLY 258 (583)
Q Consensus 187 ~iw~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 258 (583)
..++..++..+..+..+...... .+|+|||+ .|+.++. ++ .|.+||+.+++..... .++...+..+.|+|
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSP 90 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECT
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcC
Confidence 34577788888888877666665 88999999 5555554 66 4888899988877665 56666666778999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEE--eeCCCCEEEEeeCCCcEEEEEccccccceeeccc
Q psy14906 259 NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQF--YGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIA 336 (583)
Q Consensus 259 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 336 (583)
||+.|+.++.++.+.+|+++. ++.......+...+....| +| ++.+++....+ .... ..+...
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~----g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~---------~~~~-~~~~~~ 155 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLAT----LEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIR---------REDW-VPLTDW 155 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTT----CCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEE---------GGGC-CCCCSH
T ss_pred CCCEEEEEeCCCeEEEEECCC----CcceeeeechhhcccccceeECC-CCCeecccccc---------Cccc-cccccc
Confidence 999999999999999997653 2333333334443333333 44 66666542110 0000 000000
Q ss_pred hhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCce
Q psy14906 337 SANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPT 416 (583)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 416 (583)
. .+. . ......+..+.+||+.+....... .+...+.
T Consensus 156 --~-----------------------~~~----------~-~~~~~~~~~l~~~d~~~g~~~~l~--------~~~~~~~ 191 (388)
T 3pe7_A 156 --K-----------------------KFH----------E-FYFTKPCCRLMRVDLKTGESTVIL--------QENQWLG 191 (388)
T ss_dssp --H-----------------------HHH----------H-HGGGCCCEEEEEEETTTCCEEEEE--------EESSCEE
T ss_pred --c-----------------------hhh----------h-hhccCCcceEEEEECCCCceEEee--------cCCcccc
Confidence 0 000 0 000011234555665544321111 0114578
Q ss_pred EEEEcc-CCcEEEEEecC------ceEEEEEcccCccccccCCCCCCCcc-cCeeEEEEeCCCcEEEEeec-CC----cE
Q psy14906 417 CVYITH-CGNFVLIGYSS------GHVDRFNIQSGAHRGSYGHDNQPGHV-GGVRGVVSDNLNQIVISGGN-DQ----TV 483 (583)
Q Consensus 417 ~~~~s~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~-dg----~i 483 (583)
.+.|+| ||+.|+....+ ..|.++|...+...... ..+. ..+..++|+|||+.|+..+. ++ .|
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK-----THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC-----CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee-----eCCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence 899999 99998887653 37888887765543332 2222 35788999999997765443 22 39
Q ss_pred EEEEccCCCCCceEEeeccC------CeeeEEeccCCcEEEEE---------eCCceEEEEEccccceEEeeccccc---
Q psy14906 484 KVWHFKQTGKPPLRSIKLDN------GISFFRTHQESSMLAVC---------LDDFTVNIIDIDTCTIIRKLSGHMG--- 545 (583)
Q Consensus 484 ~iwd~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~h~~--- 545 (583)
++||+.++ +......... ......|+|||+.|+.. ..+..|++||+.+++. ..+..|..
T Consensus 267 ~~~d~~~g--~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~ 343 (388)
T 3pe7_A 267 YSADPETL--ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWK 343 (388)
T ss_dssp EEECTTTC--CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCC
T ss_pred EEEecCCC--ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccc
Confidence 99999987 4332222221 12334799999988864 4566899999998765 44555555
Q ss_pred --------ceeeEEecCCCcEEEEEe-CCCeEEEEeCC
Q psy14906 546 --------QLTDADFSPDSRWLITAS-MDCTIRVWDIP 574 (583)
Q Consensus 546 --------~v~~l~~s~d~~~l~s~~-~d~~i~vw~~~ 574 (583)
.+.+++|+|||++|+.++ .++...||.++
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 588899999999887665 46666666544
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.91 E-value=2.8e-21 Score=181.58 Aligned_cols=304 Identities=12% Similarity=0.036 Sum_probs=206.3
Q ss_pred ccCCCEEEEEe------CCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec---------
Q psy14906 118 LPFGPHLISVD------EESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS--------- 182 (583)
Q Consensus 118 s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--------- 182 (583)
.++++++++.. .|+.|.+||..+++.+.++. .+..+ .++|+||+++|+++..
T Consensus 12 ~~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~-----------~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~ 78 (361)
T 2oiz_A 12 APQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP-----------TAFNG--HVQVSNDGKKIYTMTTYHERITRGK 78 (361)
T ss_dssp SCGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE-----------CCEEE--EEEECTTSSEEEEEEEEETTSSSSC
T ss_pred CCCCCEEEEECCCCCccccCeEEEEECCCCeEEEEec-----------CCCCC--ceEECCCCCEEEEEEecccccccCC
Confidence 34667777654 36799999999999888876 44444 8999999999998863
Q ss_pred -CCeEEEEEccCCceeEEEecc------CCCeEEEEEecCCCCEEEEEcC--CCcEEEEeCCCCeehhh-hhhccccceE
Q psy14906 183 -NKKIILHNILTDESLMEFIQT------WGPVTALSFRTDGPPMMVSGSN--TGHLTVWNLEDRQVENQ-IKKAHRKVVT 252 (583)
Q Consensus 183 -d~~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~v~ 252 (583)
++.|.+||..+++.+.++... ......++|+|||+ +|+++.. ++.|.+||+.+++.+.. +. ... ..
T Consensus 79 ~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~~-~~ 154 (361)
T 2oiz_A 79 RSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTA--AAG-CW 154 (361)
T ss_dssp EEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGG--GTT-EE
T ss_pred CCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEec--CCC-cc
Confidence 567999999999998887643 24567899999999 6666543 68899999999988877 62 222 23
Q ss_pred EEEEecCC-CEEEEEeCCCeEEEEEccCCCCCceeeEE------eccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEcc
Q psy14906 253 GAHFLYNE-PLLVTSSPDNTLKLWIFDKADGNGRLLRI------REGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTK 325 (583)
Q Consensus 253 ~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 325 (583)
.+.+.|++ ..+++.+.||.+.+|+++.. ++.... +..+..+ ..+.+.+ ++..++..+.++.+.++|+.
T Consensus 155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~---g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~ 229 (361)
T 2oiz_A 155 SVIPQPNRPRSFMTICGDGGLLTINLGED---GKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFS 229 (361)
T ss_dssp EEEECTTSSSEEEEEETTSSEEEEEECTT---SSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECS
T ss_pred eeEEcCCCCeeEEEECCCCcEEEEEECCC---CcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEec
Confidence 35567765 67788889999999976431 222211 1111111 1222333 44555555566666666654
Q ss_pred ccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecc
Q psy14906 326 SETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPE 405 (583)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 405 (583)
......
T Consensus 230 ~~~~~~-------------------------------------------------------------------------- 235 (361)
T 2oiz_A 230 GDEVKV-------------------------------------------------------------------------- 235 (361)
T ss_dssp SSSCEE--------------------------------------------------------------------------
T ss_pred CCCcee--------------------------------------------------------------------------
Confidence 321100
Q ss_pred cccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec------
Q psy14906 406 RCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN------ 479 (583)
Q Consensus 406 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------ 479 (583)
+..|++....... . .........++|+|+++.++.+..
T Consensus 236 ------------------------------~~~~~~~~~~~~~-~-----~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~ 279 (361)
T 2oiz_A 236 ------------------------------DGPWSLLNDEDKA-K-----NWVPGGYNLVGLHRASGRMYVFMHPDGKEG 279 (361)
T ss_dssp ------------------------------EEEEESCCHHHHH-T-----TCEECCSSCEEEETTTTEEEEEEESSCCTT
T ss_pred ------------------------------cccccccCccccc-c-----ccccCCeeEEEEecCCCeEEEEEccCCCcc
Confidence 0001110000000 0 000111123678888776665432
Q ss_pred -----CCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEcccc--ceEEeecccccceeeEEe
Q psy14906 480 -----DQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTC--TIIRKLSGHMGQLTDADF 552 (583)
Q Consensus 480 -----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~h~~~v~~l~~ 552 (583)
.+.|.+||+.+. +.+..+..+. +..++|+|||++|+++.. +.|.+||.+++ +.+..+..+......+++
T Consensus 280 ~~~~~~~~v~viD~~t~--~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 280 THKFPAAEIWVMDTKTK--QRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp CTTCCCSEEEEEETTTT--EEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred cccCCCceEEEEECCCC--cEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence 347999999998 8888888877 999999999999998887 99999999999 999888777788899999
Q ss_pred cCCCc
Q psy14906 553 SPDSR 557 (583)
Q Consensus 553 s~d~~ 557 (583)
+|||+
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99985
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=4.1e-22 Score=191.69 Aligned_cols=323 Identities=10% Similarity=-0.064 Sum_probs=211.7
Q ss_pred EEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC---CeEEEEEccCCceeEEEeccCCCeEEE
Q psy14906 134 KVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN---KKIILHNILTDESLMEFIQTWGPVTAL 210 (583)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~~ 210 (583)
..+|..+++.+..+...... .+...+..++|+|||++|+..... ..|.+||+.+++......++......+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~------~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 86 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDII------CHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGG 86 (396)
T ss_dssp EEECTTTCCEEEECSCTTSC------EECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTC
T ss_pred eeecCCCCcceEEEecCCCC------ccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccc
Confidence 45577888877776521100 122336778999999998877543 478899998877654433332223347
Q ss_pred EEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEe
Q psy14906 211 SFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIR 290 (583)
Q Consensus 211 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 290 (583)
.|+|||+ .|+..+.++.|.+||+.+++..... ..+.. |+++|+.|+....+....+|..
T Consensus 87 ~~spdg~-~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~------~~~~g~~l~~~~~~~~~~~~~~------------- 145 (396)
T 3c5m_A 87 FISTDER-AFFYVKNELNLMKVDLETLEEQVIY-TVDEE------WKGYGTWVANSDCTKLVGIEIL------------- 145 (396)
T ss_dssp EECTTSS-EEEEEETTTEEEEEETTTCCEEEEE-ECCTT------EEEEEEEEECTTSSEEEEEEEE-------------
T ss_pred eECCCCC-EEEEEEcCCcEEEEECCCCCcEEEE-ecccc------cCCCCCEEEeccCCcccccccc-------------
Confidence 8999999 7877777889999999887654433 22332 7788888887776665555521
Q ss_pred ccCCCCCeeEEEeeCCCCEEEEe-----eCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceee
Q psy14906 291 EGHSAPPNYIQFYGNSSDNILSA-----AGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFS 365 (583)
Q Consensus 291 ~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (583)
.+.++| +++.++.. ..+..|.+||+.+++......
T Consensus 146 --------~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~------------------------------- 185 (396)
T 3c5m_A 146 --------KRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ------------------------------- 185 (396)
T ss_dssp --------GGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-------------------------------
T ss_pred --------ccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeecc-------------------------------
Confidence 123555 66666544 356678888887654321110
Q ss_pred eecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc-CCcEEEEEecC------ceEEE
Q psy14906 366 FGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH-CGNFVLIGYSS------GHVDR 438 (583)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d------g~i~i 438 (583)
+...+..+.|+| +++.++..+.+ ..|.+
T Consensus 186 ---------------------------------------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 186 ---------------------------------------------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp ---------------------------------------------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred ---------------------------------------------CCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 013577889999 78877766543 36888
Q ss_pred EEcccCccccccCCCCCCCc-ccCeeEEEEeCCCcEEEEeecC-----CcEEEEEccCCCCCceEEeeccCCeeeEEecc
Q psy14906 439 FNIQSGAHRGSYGHDNQPGH-VGGVRGVVSDNLNQIVISGGND-----QTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ 512 (583)
Q Consensus 439 ~d~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 512 (583)
||+..++..... ... ...+..++|+|||++|+.++.+ +.|++||+.++ +........ ... +.|+|
T Consensus 221 ~d~~~~~~~~l~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~-~~~-~~~s~ 291 (396)
T 3c5m_A 221 VNEDGSNVRKIK-----EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL--ENEEVMVMP-PCS-HLMSN 291 (396)
T ss_dssp EETTSCCCEESS-----CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC--CEEEEEECC-SEE-EEEEC
T ss_pred EECCCCceeEee-----ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC--CeEEeeeCC-CCC-CCccC
Confidence 898765543332 211 3358889999999988777544 44999999877 443333222 233 89999
Q ss_pred -CCcEEEEEe----------------CCceEEEEEccccceEEeeccccc-----------ceeeEEecCCCcEEEEEeC
Q psy14906 513 -ESSMLAVCL----------------DDFTVNIIDIDTCTIIRKLSGHMG-----------QLTDADFSPDSRWLITASM 564 (583)
Q Consensus 513 -~~~~l~~~~----------------~dg~i~i~d~~~~~~~~~~~~h~~-----------~v~~l~~s~d~~~l~s~~~ 564 (583)
||++++++. .+..|++||+.+++.. .+..+.. .+..++|+|||++|+.++.
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 999888754 3478999999887653 4444544 2677899999999887764
Q ss_pred -CCe--EEEEeCCCccc
Q psy14906 565 -DCT--IRVWDIPSSQL 578 (583)
Q Consensus 565 -d~~--i~vw~~~~~~~ 578 (583)
++. |.+.++.+++.
T Consensus 371 ~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 371 FEGVPAIYIADVPESYK 387 (396)
T ss_dssp TTSSCEEEEEECCTTCC
T ss_pred CCCCceEEEEEEccccc
Confidence 444 55555555544
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=7.2e-21 Score=183.15 Aligned_cols=218 Identities=9% Similarity=0.026 Sum_probs=153.4
Q ss_pred CeEEEEeccceeeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCc----------EEEEeeccCCceEEecccC
Q psy14906 92 NIIYAWRRGIDIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEE----------TYLELSFDNDTFKIMGKRW 161 (583)
Q Consensus 92 ~~i~vw~~~~~~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~ 161 (583)
+.+++|+.... +........++++++.++++++.++ +++|+..... .+.... . ...+ .+
T Consensus 23 ~~vri~~~~~~----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~---~~ 91 (434)
T 2oit_A 23 KKVRIFDSPEE----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV--Q-GLLV---PM 91 (434)
T ss_dssp CEEECSCCCSS----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC--C-CEEE---CC
T ss_pred eeEEecCCccc----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC--c-cccc---cC
Confidence 45666654221 1222334445577788888877776 7777653210 011000 0 0000 45
Q ss_pred CcceEEEeeCCCCCEEE----EEecCCeEEEEEccCC--------ce---eEEEeccCCCeEEEEEecCCCCEEEEEcCC
Q psy14906 162 NSCVNVLEPSPVVDIIG----VGLSNKKIILHNILTD--------ES---LMEFIQTWGPVTALSFRTDGPPMMVSGSNT 226 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~----~~~~d~~i~iw~~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 226 (583)
...|.+++|+|++++|+ +|+.|+.|++||+.++ +. +..+.+|...|.+++|+|++..+|++++.|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 67899999999999999 6788999999999765 22 344567889999999999844499999999
Q ss_pred CcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccC-------CCCCee
Q psy14906 227 GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGH-------SAPPNY 299 (583)
Q Consensus 227 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~-------~~~v~~ 299 (583)
|+|++||++++...... .+|...|.+++|+|+|++|++|+.||.|++||++ ......+..| ...+.+
T Consensus 172 g~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 172 GSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp SCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEE
T ss_pred CeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEE
Confidence 99999999988766555 5788999999999999999999999999999653 1223333322 337899
Q ss_pred EEEeeCCCCEEEE-eeCCC------cEEEEEcccc
Q psy14906 300 IQFYGNSSDNILS-AAGDS------TLRIFNTKSE 327 (583)
Q Consensus 300 ~~~~~~~~~~l~~-~~~dg------~i~iwd~~~~ 327 (583)
++|++ ++.++++ ...+| .+++|++...
T Consensus 246 v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEec-CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99997 5655544 33443 3899999765
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=1e-21 Score=188.20 Aligned_cols=301 Identities=10% Similarity=-0.045 Sum_probs=197.8
Q ss_pred EEEEcCCCcEEEEeeccCCceEEecccCCcceEE-----EeeCCCCCEEEEEec-CC--eEEEEEccCCceeEEEeccCC
Q psy14906 134 KVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNV-----LEPSPVVDIIGVGLS-NK--KIILHNILTDESLMEFIQTWG 205 (583)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~~~~~-d~--~i~iw~~~~~~~~~~~~~~~~ 205 (583)
..+|..++..+..+. .+...... .+|+|||++|+.++. ++ .|.+||+.+++......++..
T Consensus 13 ~~~~~~~g~~~~~lt-----------~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~ 81 (388)
T 3pe7_A 13 TYQDASTGAQVTRLT-----------PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD 81 (388)
T ss_dssp EEECTTTCCEEEECS-----------CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB
T ss_pred EEecCCCCcceEEec-----------CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC
Confidence 345777788887776 55555555 889999999999887 56 488899998888777667755
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEE--EecCCCEEEEE-----------------
Q psy14906 206 PVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAH--FLYNEPLLVTS----------------- 266 (583)
Q Consensus 206 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~----------------- 266 (583)
.+..+.|+|||+ .|+.++.++.|++||+.+++..... ..+...+.... ++|++++++..
T Consensus 82 ~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 82 NTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp CSSSCEECTTSS-EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred CccceEEcCCCC-EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 666788999999 7888888889999999998766544 34444444333 48999988743
Q ss_pred -----eCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC------CcEEEEEccccccceeecc
Q psy14906 267 -----SPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD------STLRIFNTKSETSNKNLGI 335 (583)
Q Consensus 267 -----~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~ 335 (583)
..+..|.+||+. ++. ...+..+...+..+.|+|.+++.|+....+ ..|.++|...+........
T Consensus 160 ~~~~~~~~~~l~~~d~~--~g~---~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 234 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLK--TGE---STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH 234 (388)
T ss_dssp HHGGGCCCEEEEEEETT--TCC---EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred hhhccCCcceEEEEECC--CCc---eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence 234567777554 222 233334566788999997367777776653 2566666654322111000
Q ss_pred chhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCc
Q psy14906 336 ASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKP 415 (583)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 415 (583)
.....+
T Consensus 235 --------------------------------------------------------------------------~~~~~~ 240 (388)
T 3pe7_A 235 --------------------------------------------------------------------------AEGESC 240 (388)
T ss_dssp --------------------------------------------------------------------------CTTEEE
T ss_pred --------------------------------------------------------------------------CCCccc
Confidence 000135
Q ss_pred eEEEEccCCcEEEEEec-C----ceEEEEEcccCccccccCCCCCCCccc---CeeEEEEeCCCcEEEEe---------e
Q psy14906 416 TCVYITHCGNFVLIGYS-S----GHVDRFNIQSGAHRGSYGHDNQPGHVG---GVRGVVSDNLNQIVISG---------G 478 (583)
Q Consensus 416 ~~~~~s~~~~~l~~~~~-d----g~i~i~d~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~---------~ 478 (583)
...+|+|||+.|+..+. + +.|++||+.+++....... .++.. ....+.|+|||+.|+.. .
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM---PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE---CCEEEEEECTTSSEEEEEECCC------------C
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC---CCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 67889999998766443 2 2499999998875332211 12111 01223799999987754 4
Q ss_pred cCCcEEEEEccCCCCCceEEeeccC-----------CeeeEEeccCCcEEEEEeC-CceEEEEEc
Q psy14906 479 NDQTVKVWHFKQTGKPPLRSIKLDN-----------GISFFRTHQESSMLAVCLD-DFTVNIIDI 531 (583)
Q Consensus 479 ~dg~i~iwd~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~-dg~i~i~d~ 531 (583)
.+..|++||+.++ +......+.. .+..++|+|||+.|+..+. ++...||.+
T Consensus 318 ~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 318 NDPFLYVFNMKNG--TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CCCEEEEEETTTT--EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCEEEEEeccCC--ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 5668999999886 5444444444 4788999999998887664 565556544
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=8.8e-20 Score=189.24 Aligned_cols=369 Identities=11% Similarity=-0.000 Sum_probs=226.9
Q ss_pred eEEEEe--eCeEEEEEcCCeEEEEecc-ceeeeeecccCcc-----E--EEEccCCCEEEEEeCC---------CcEEEE
Q psy14906 76 ITCLSS--DFFHIYTSANNIIYAWRRG-IDIVGTYKGHTSP-----V--HLILPFGPHLISVDEE---------SNVKVW 136 (583)
Q Consensus 76 v~~~~~--~~~~~~~~~~~~i~vw~~~-~~~~~~~~~h~~~-----v--~~is~~~~~l~s~~~d---------g~i~iw 136 (583)
..++++ |+++++.+ |++|++||.. ++....+.+|... . ..+||||++|+.++.+ +.+.+|
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 445665 67787777 9999999974 5556667777543 2 3569999999998875 567799
Q ss_pred EcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEE-EeccCCCe--------
Q psy14906 137 DIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLME-FIQTWGPV-------- 207 (583)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v-------- 207 (583)
|+.+++.. .+. .+...+...+|||||+.||.+ .++.|++|++.+++..+. ..++...+
T Consensus 98 d~~~~~~~-~l~-----------~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 98 DLNKRQLI-TEE-----------RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp ETTTTEEC-CSS-----------CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred ECCCCcEE-Ecc-----------cCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 99998754 333 667789999999999999988 568999999988775432 12332222
Q ss_pred ---------EEEEEecCCCCEEEEEcC-CCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy14906 208 ---------TALSFRTDGPPMMVSGSN-TGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIF 277 (583)
Q Consensus 208 ---------~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 277 (583)
..+.|||||+ .|+.++. ++.+.+|++....... .+...+..+.+.+.|.. .....|.+||+
T Consensus 165 ~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~----~~~~~~~~~~yp~~G~~----~~~~~l~v~d~ 235 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDES----LQYPKTVRVPYPKAGAV----NPTVKFFVVNT 235 (740)
T ss_dssp HHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTT----CSSCEEEEEECCBTTSC----CCEEEEEEEET
T ss_pred ccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCC----CCCCcceeecCCCCcCc----CCeeEEEEEEC
Confidence 3589999999 6666554 4558888864221111 24456677788777643 12236778866
Q ss_pred cCCC-CCceeeEEec------cCCCCCeeEEEeeCCCCEEEEeeC----CCcEEEEEccccc----cceeeccchhhhhh
Q psy14906 278 DKAD-GNGRLLRIRE------GHSAPPNYIQFYGNSSDNILSAAG----DSTLRIFNTKSET----SNKNLGIASANRNN 342 (583)
Q Consensus 278 ~~~~-~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~~~~~~~~~~~~~ 342 (583)
+... +.......+. +|...+..++|+| |++.++.... +..|++||+.+++ +......
T Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l------- 307 (740)
T 4a5s_A 236 DSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH------- 307 (740)
T ss_dssp TSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE-------
T ss_pred CCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe-------
Confidence 5300 1110122232 3777789999998 7876665432 3479999998875 2111000
Q ss_pred hhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc
Q psy14906 343 LKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH 422 (583)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 422 (583)
.....+ ..... .......|+|
T Consensus 308 ------------------------------------~~~~~~---------------------~~v~~--~~~~~p~fsp 328 (740)
T 4a5s_A 308 ------------------------------------IEMSTT---------------------GWVGR--FRPSEPHFTL 328 (740)
T ss_dssp ------------------------------------EEECSS---------------------SCSSS--SSCCCCEECT
T ss_pred ------------------------------------eeccCC---------------------ceEcc--CcCCCceEcC
Confidence 000000 00000 0123578999
Q ss_pred CCcEEE-EEec-C--ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEE-Eeec----CCcEEEEEccCCCC
Q psy14906 423 CGNFVL-IGYS-S--GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVI-SGGN----DQTVKVWHFKQTGK 493 (583)
Q Consensus 423 ~~~~l~-~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~----dg~i~iwd~~~~~~ 493 (583)
||+.++ ..+. + ..|++||..+++..... .....+..+.. +|++.|+ ++.. .+...||.+.....
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT------~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTFIT------KGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCEESC------CSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceEecc------cCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 999877 5543 3 46888898876654432 33455665542 3455554 4433 23455555443211
Q ss_pred CceEEeec-----cCCeeeEEeccCCcEEEEEeCC---ceEEEEEccccceEEeec
Q psy14906 494 PPLRSIKL-----DNGISFFRTHQESSMLAVCLDD---FTVNIIDIDTCTIIRKLS 541 (583)
Q Consensus 494 ~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~ 541 (583)
.....+.. ........|||++++++..... ..+.+++..+++.+..+.
T Consensus 402 ~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 402 TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 22222321 2467889999999987765543 478888888776655443
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=1.8e-20 Score=177.30 Aligned_cols=291 Identities=11% Similarity=0.095 Sum_probs=187.0
Q ss_pred EEEEEeCC--CcEEEEEc--CCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEcc-CCcee
Q psy14906 123 HLISVDEE--SNVKVWDI--KAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNIL-TDESL 197 (583)
Q Consensus 123 ~l~s~~~d--g~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~-~~~~~ 197 (583)
+|+.|+.. +.|.+|++ .+++........ ......+..++|+|||++|++++.+ .|.+|++. +++..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~--------~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~ 74 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTE--------IPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV 74 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEE--------CCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEc--------cCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE
Confidence 45555543 56887765 455432211100 0223467889999999999988887 99999997 77765
Q ss_pred EEEecc-CCCeEEEEEecCCCC-EEEEEc-------------CCCcEEEEeCC-CCeehhhhhh---ccccceEEEEEec
Q psy14906 198 MEFIQT-WGPVTALSFRTDGPP-MMVSGS-------------NTGHLTVWNLE-DRQVENQIKK---AHRKVVTGAHFLY 258 (583)
Q Consensus 198 ~~~~~~-~~~v~~~~~~~~~~~-~l~s~~-------------~dg~i~vwd~~-~~~~~~~~~~---~~~~~v~~~~~~~ 258 (583)
...... .+.+..++|+|+|++ +++++. .+|.+.+|++. +++....+.. .+...+.+++|+|
T Consensus 75 ~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp 154 (365)
T 1jof_A 75 HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP 154 (365)
T ss_dssp EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT
T ss_pred EeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC
Confidence 433311 134667899999984 244543 68999999997 4555433311 2456789999999
Q ss_pred CCCEEEEEeC-CCeEEEEEccCCCCCceeeEEec--cCCCCCeeEEEeeCCCCEEEEeeC-CCcEEEEEccc--ccccee
Q psy14906 259 NEPLLVTSSP-DNTLKLWIFDKADGNGRLLRIRE--GHSAPPNYIQFYGNSSDNILSAAG-DSTLRIFNTKS--ETSNKN 332 (583)
Q Consensus 259 ~~~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~ 332 (583)
||++|++++. ++.|.+|+++. ++....+..+. .|...+..++|+| +++++++++. ++.+.+|++.. ++....
T Consensus 155 dG~~l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 232 (365)
T 1jof_A 155 TETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYT 232 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEcCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence 9998887764 67999998763 22333333333 2456789999997 8988887765 68999998753 322100
Q ss_pred eccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCC
Q psy14906 333 LGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQ 412 (583)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (583)
... +-.+ +... ..+.
T Consensus 233 ~~~-----------------------------------------------------~~~~-----------~~~~-~g~~ 247 (365)
T 1jof_A 233 HHS-----------------------------------------------------FPLI-----------PPGI-PDRD 247 (365)
T ss_dssp EEE-----------------------------------------------------EESS-----------CTTC-CCBC
T ss_pred cce-----------------------------------------------------EEcC-----------CCCc-CCcc
Confidence 000 0000 0000 0000
Q ss_pred ------CCceEEE-EccCCcEEEEEecCc------eEEEEEcc-cCccccccCCCCCCCcccCeeEEEEeC---CCcEEE
Q psy14906 413 ------SKPTCVY-ITHCGNFVLIGYSSG------HVDRFNIQ-SGAHRGSYGHDNQPGHVGGVRGVVSDN---LNQIVI 475 (583)
Q Consensus 413 ------~~i~~~~-~s~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~ 475 (583)
..+..++ |+|||++|+++..+. .|.+|++. +++........ ..+...+..++|+| |+++|+
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~--~~~~~~~~~~a~sp~~~dg~~l~ 325 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS--PTPTSGGHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE--ECSSCCTTCCCEEECTTCTTEEE
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee--ecCCCCcccceecCCCcCCCEEE
Confidence 1477899 999999988776533 89999996 55543211000 23445567899999 899999
Q ss_pred EeecC-CcEEEEEccCC
Q psy14906 476 SGGND-QTVKVWHFKQT 491 (583)
Q Consensus 476 s~~~d-g~i~iwd~~~~ 491 (583)
+++.+ +.|.+|+++..
T Consensus 326 v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 326 ITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECSSSCEEEEEEEETT
T ss_pred EEEcCCCeEEEEEEchh
Confidence 88764 89999999865
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.88 E-value=5.3e-19 Score=174.03 Aligned_cols=329 Identities=12% Similarity=0.059 Sum_probs=229.1
Q ss_pred CCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC--CCeehhhhhhcccc
Q psy14906 172 PVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLE--DRQVENQIKKAHRK 249 (583)
Q Consensus 172 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~ 249 (583)
+.+.++++...++.|.++|..+++.+.++... ..+..+.|+|||+ ++++++.++.|.+||+. +++.+.++.. ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~ 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GS 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEEC--CS
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEec--CC
Confidence 44556677778899999999999999988765 4677999999999 77888889999999996 7777777732 33
Q ss_pred ceEEEEEe----cCCCEEEEEeC-CCeEEEEEccCCCCCceeeEEecc----------CCC-CCeeEEEeeCCCCEEEEe
Q psy14906 250 VVTGAHFL----YNEPLLVTSSP-DNTLKLWIFDKADGNGRLLRIREG----------HSA-PPNYIQFYGNSSDNILSA 313 (583)
Q Consensus 250 ~v~~~~~~----~~~~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~~~ 313 (583)
....++|+ |||++++++.. ++.+.++|.. ..+.+..+.. |.. .+..+..++....+++..
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~----t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE----TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT----TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECC----CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 46789999 69998887765 5899999643 3445444331 112 456777776444555566
Q ss_pred eCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecC
Q psy14906 314 AGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFY 393 (583)
Q Consensus 314 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 393 (583)
..+|.|.++|.......... .+.
T Consensus 317 ~~~g~v~~vd~~~~~~~~v~---------------------------------------------------------~i~ 339 (567)
T 1qks_A 317 KETGKILLVDYTDLNNLKTT---------------------------------------------------------EIS 339 (567)
T ss_dssp TTTTEEEEEETTCSSEEEEE---------------------------------------------------------EEE
T ss_pred cCCCeEEEEecCCCccceee---------------------------------------------------------eee
Confidence 66788888887653211100 000
Q ss_pred cccccceeeecccccccCCCCceEEEEccCCcEEEEEe-cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc
Q psy14906 394 KSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY-SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ 472 (583)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 472 (583)
.......+.|+|+|++++++. .++.|.++|+.+++....+..-....|.+.-..+ ++|++.
T Consensus 340 -----------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g 401 (567)
T 1qks_A 340 -----------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFG 401 (567)
T ss_dssp -----------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTE
T ss_pred -----------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCC
Confidence 003456788999999987765 5789999999999877665320112454322222 688754
Q ss_pred -EEEEee-cCCcEEEEEccCCC-----CCceEEeeccC-CeeeEEeccCCcEEEEEeC-------CceEEEEEcccc---
Q psy14906 473 -IVISGG-NDQTVKVWHFKQTG-----KPPLRSIKLDN-GISFFRTHQESSMLAVCLD-------DFTVNIIDIDTC--- 534 (583)
Q Consensus 473 -~l~s~~-~dg~i~iwd~~~~~-----~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~-------dg~i~i~d~~~~--- 534 (583)
.+++.. .++.|.++|..... .+.++.+...+ .-..+..+|++++|.+... .++|.++|+.+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 481 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 481 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc
Confidence 444543 46899999998732 15667776553 3356889999999998763 359999999877
Q ss_pred --ce-EEeec--------ccccceeeEEecCCCcEEEEEe-----CCCeEEEEeCCCcccccccC
Q psy14906 535 --TI-IRKLS--------GHMGQLTDADFSPDSRWLITAS-----MDCTIRVWDIPSSQLIDCFQ 583 (583)
Q Consensus 535 --~~-~~~~~--------~h~~~v~~l~~s~d~~~l~s~~-----~d~~i~vw~~~~~~~~~~~~ 583 (583)
.. ...+. .-...+..+.|+|||+++..+. .++.|.|+|..+++++++++
T Consensus 482 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 482 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 21 12221 1235789999999999877653 37899999999999887753
No 168
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=6.9e-20 Score=176.30 Aligned_cols=256 Identities=12% Similarity=0.144 Sum_probs=168.0
Q ss_pred CCeEEEEecCCcEEEeecCCCCCCeEEEEe--eCeEEEEEcCCeEEEEeccce-----------eeee-----ecccCcc
Q psy14906 52 GKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DFFHIYTSANNIIYAWRRGID-----------IVGT-----YKGHTSP 113 (583)
Q Consensus 52 ~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~i~vw~~~~~-----------~~~~-----~~~h~~~ 113 (583)
.+.+++|+.... + +...+.++++ ++.+++++....+++|+.... .... ...|...
T Consensus 22 ~~~vri~~~~~~-----~--~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 22 LKKVRIFDSPEE-----L--PKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CCEEECSCCCSS-----C--CCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeeEEecCCccc-----c--CCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 467888764311 2 2334555555 444444444334999875211 0110 1135667
Q ss_pred EEEE--ccCCCEEE----EEeCCCcEEEEEcCCC--------cEEEEeeccCCceEEecccCCcceEEEeeCCC-CCEEE
Q psy14906 114 VHLI--LPFGPHLI----SVDEESNVKVWDIKAE--------ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPV-VDIIG 178 (583)
Q Consensus 114 v~~i--s~~~~~l~----s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~ 178 (583)
|.++ +|+|++|| +++.|+.|+|||+.++ +.+..+... .+|...|.+++|+|+ +++|+
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--------~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL--------KDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC--------CSGGGSEEEEEECSSCTTEEE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc--------CCCCCceEEEEECCCCCCEEE
Confidence 8887 99999999 7888999999998765 222222110 178999999999998 88999
Q ss_pred EEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhh------hccccceE
Q psy14906 179 VGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIK------KAHRKVVT 252 (583)
Q Consensus 179 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~~v~ 252 (583)
+++.||+|++||++++..+....+|...|.+++|+|+|+ +|++|+.||.|++||.+ ++....+. ..|...|.
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 999999999999999877777778889999999999998 89999999999999998 44333331 12344899
Q ss_pred EEEEecCCCEEEEEe-CCC------eEEEEEccCCCCC-ceeeEEec-------cCCCCCeeEEEeeCCCCEEEEeeC-C
Q psy14906 253 GAHFLYNEPLLVTSS-PDN------TLKLWIFDKADGN-GRLLRIRE-------GHSAPPNYIQFYGNSSDNILSAAG-D 316 (583)
Q Consensus 253 ~~~~~~~~~~l~s~~-~d~------~i~~w~~~~~~~~-~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~-d 316 (583)
+++|++++.++++.+ .+| .+++|++...... ......+. +...+-..+.+.+ +.+++++++. .
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~-dw~l~~v~s~~s 323 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIE-EWDLVLAASAAS 323 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEG-GGTEEEEEETTC
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhc-cCCEEEEecCCC
Confidence 999999888775433 332 3899987643221 11222221 2222333344445 4556655544 4
Q ss_pred CcEEEEEcc
Q psy14906 317 STLRIFNTK 325 (583)
Q Consensus 317 g~i~iwd~~ 325 (583)
+.|.++...
T Consensus 324 ~dv~vl~~~ 332 (434)
T 2oit_A 324 TEVSILARQ 332 (434)
T ss_dssp SBCEEEEEC
T ss_pred CceeEEEec
Confidence 556666643
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=3.7e-19 Score=167.10 Aligned_cols=287 Identities=10% Similarity=0.056 Sum_probs=202.5
Q ss_pred CCeEEEEec-cceeeeeecccCccEEEEccCCCEEEEEeC----------CCcEEEEEcCCCcEEEEeeccCCceEEecc
Q psy14906 91 NNIIYAWRR-GIDIVGTYKGHTSPVHLILPFGPHLISVDE----------ESNVKVWDIKAEETYLELSFDNDTFKIMGK 159 (583)
Q Consensus 91 ~~~i~vw~~-~~~~~~~~~~h~~~v~~is~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (583)
|+.|.+||. .++.+..+..+..+-..++|||++|++++. ++.|.+||..+++.+.++......+
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~----- 104 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV----- 104 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC-----
T ss_pred cCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc-----
Confidence 679999995 456677777776662345999999999863 5789999999999988887432110
Q ss_pred cCCcceEEEeeCCCCCEEEEEec--CCeEEEEEccCCceeEE-EeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLS--NKKIILHNILTDESLME-FIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLED 236 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 236 (583)
.+......++|+|||++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++...+++.+.||.+.+|+...
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 12345677999999999998874 57899999999988877 5433 2233667888755788889999999999865
Q ss_pred -Ceeh------hhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccC----------CCCCee
Q psy14906 237 -RQVE------NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGH----------SAPPNY 299 (583)
Q Consensus 237 -~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~----------~~~v~~ 299 (583)
++.. ..+ .....++ .+.+++++..++..+.++.+.++|+... .......+... ......
T Consensus 183 ~g~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~g~~~ 258 (361)
T 2oiz_A 183 DGKVASQSRSKQMF-SVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGD--EVKVDGPWSLLNDEDKAKNWVPGGYNL 258 (361)
T ss_dssp TSSEEEEEECCCCS-CTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSS--SCEEEEEEESCCHHHHHTTCEECCSSC
T ss_pred CCcEeeeccccceE-cCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCC--CceecccccccCccccccccccCCeeE
Confidence 4433 112 1122222 3345778877787888999999976432 22222221110 112234
Q ss_pred EEEeeCCCCEEEEeeC-----------CCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeec
Q psy14906 300 IQFYGNSSDNILSAAG-----------DSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGL 368 (583)
Q Consensus 300 ~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (583)
++|+| ++++++.+.. .+.|.+||+.+.+.+..+...
T Consensus 259 ~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-------------------------------- 305 (361)
T 2oiz_A 259 VGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-------------------------------- 305 (361)
T ss_dssp EEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT--------------------------------
T ss_pred EEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC--------------------------------
Confidence 78887 6777776543 347899998887655443111
Q ss_pred ccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccC--cc
Q psy14906 369 AREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSG--AH 446 (583)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~ 446 (583)
. +..++|+|||++|++++. +.|.+||..++ +.
T Consensus 306 --------------------------------------------~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~ 339 (361)
T 2oiz_A 306 --------------------------------------------D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKL 339 (361)
T ss_dssp --------------------------------------------T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEE
T ss_pred --------------------------------------------C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCccee
Confidence 3 789999999999999887 99999999999 88
Q ss_pred ccccCCCCCCCcccCeeEEEEeCCCc
Q psy14906 447 RGSYGHDNQPGHVGGVRGVVSDNLNQ 472 (583)
Q Consensus 447 ~~~~~~~~~~~h~~~v~~~~~s~~~~ 472 (583)
+..+ ..+......++++|+|+
T Consensus 340 ~~~i-----~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 340 LRTI-----EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEE-----TTSCSSEEEEEECCCSC
T ss_pred eEEe-----ccCCCCcEEEEecCCCC
Confidence 8776 46677889999999985
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=1.5e-19 Score=170.90 Aligned_cols=280 Identities=9% Similarity=0.025 Sum_probs=182.7
Q ss_pred EEEEEecC--CeEEEEEc--cCCceeEE--Ee-ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC-CCeehhhhhhcc
Q psy14906 176 IIGVGLSN--KKIILHNI--LTDESLME--FI-QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLE-DRQVENQIKKAH 247 (583)
Q Consensus 176 ~l~~~~~d--~~i~iw~~--~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~ 247 (583)
.|++|+.. +.|.+|++ .+++.... .. .....+..++|+|+++ +|++++.+ .|.+|++. ++++........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 35555543 46877765 45543222 21 2334788999999999 78888777 99999997 776644321101
Q ss_pred ccceEEEEEecCCCE--EEEEe-------------CCCeEEEEEccCCCCCceeeEEec----cCCCCCeeEEEeeCCCC
Q psy14906 248 RKVVTGAHFLYNEPL--LVTSS-------------PDNTLKLWIFDKADGNGRLLRIRE----GHSAPPNYIQFYGNSSD 308 (583)
Q Consensus 248 ~~~v~~~~~~~~~~~--l~s~~-------------~d~~i~~w~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~ 308 (583)
.+.+.+++|+|+|++ +++++ .++.+.+|+++.. ++....+. .+...+.+++|+| +++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~sp-dG~ 157 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET---GKLEKNVQNYEYQENTGIHGMVFDP-TET 157 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT---CCEEEEEEEEECCTTCCEEEEEECT-TSS
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC---CcCcceEeeEEeCCCCcceEEEECC-CCC
Confidence 123556889999994 55553 6899999987642 22222222 2456789999998 888
Q ss_pred EEEEeeC-CCcEEEEEcc-ccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCce
Q psy14906 309 NILSAAG-DSTLRIFNTK-SETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNK 386 (583)
Q Consensus 309 ~l~~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (583)
+++++.. ++.|++||+. +++.....
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~----------------------------------------------------- 184 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVG----------------------------------------------------- 184 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEE-----------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEee-----------------------------------------------------
Confidence 8887654 6799999987 44321100
Q ss_pred EEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec-CceEEEEEcc--cCcccc---ccCC-C-CCCCc
Q psy14906 387 VSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS-SGHVDRFNIQ--SGAHRG---SYGH-D-NQPGH 458 (583)
Q Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~--~~~~~~---~~~~-~-~~~~h 458 (583)
.... ..+...+..++|+|||++++++.. ++.|.+|++. +++... .+.. + ...+|
T Consensus 185 --~~~~----------------~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~ 246 (365)
T 1jof_A 185 --SVDA----------------PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR 246 (365)
T ss_dssp --EEEC----------------SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred --eEec----------------CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence 0000 000145788999999999888765 6899999875 454321 1111 0 00123
Q ss_pred cc------CeeEEE-EeCCCcEEEEeecC-C-----cEEEEEcc-CCCCCceE---Eee-ccCCeeeEEecc---CCcEE
Q psy14906 459 VG------GVRGVV-SDNLNQIVISGGND-Q-----TVKVWHFK-QTGKPPLR---SIK-LDNGISFFRTHQ---ESSML 517 (583)
Q Consensus 459 ~~------~v~~~~-~s~~~~~l~s~~~d-g-----~i~iwd~~-~~~~~~~~---~~~-~~~~v~~~~~s~---~~~~l 517 (583)
.. .+..++ |+|||++|+++..+ . .|.+|++. ++ ++.. ... ....+..++|+| ||++|
T Consensus 247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g--~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l 324 (365)
T 1jof_A 247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG--SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS--CEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC--CEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence 33 588999 99999988776543 2 89999996 44 4433 132 234678899999 89999
Q ss_pred EEEeCC-ceEEEEEcccc
Q psy14906 518 AVCLDD-FTVNIIDIDTC 534 (583)
Q Consensus 518 ~~~~~d-g~i~i~d~~~~ 534 (583)
++++.+ +.|.+|+++..
T Consensus 325 ~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 325 AITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECSSSCEEEEEEEETT
T ss_pred EEEEcCCCeEEEEEEchh
Confidence 998875 89999999765
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.85 E-value=1.1e-17 Score=164.81 Aligned_cols=333 Identities=11% Similarity=0.047 Sum_probs=230.6
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEcc--C
Q psy14906 116 LILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNIL--T 193 (583)
Q Consensus 116 ~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~--~ 193 (583)
...|.+.++++...+++|.++|..+++.+.++.. ...+..++|+|||+++.+++.++.|.+||+. +
T Consensus 162 ~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~------------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t 229 (567)
T 1qks_A 162 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT------------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 229 (567)
T ss_dssp CCCGGGEEEEEETTTTEEEEEETTTCCEEEEEEC------------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred ccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeC------------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 3456566777777889999999999999988862 3356689999999999999999999999995 8
Q ss_pred CceeEEEeccCCCeEEEEEe----cCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhc---------ccc-ceEEEEEecC
Q psy14906 194 DESLMEFIQTWGPVTALSFR----TDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKA---------HRK-VVTGAHFLYN 259 (583)
Q Consensus 194 ~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------~~~-~v~~~~~~~~ 259 (583)
++.+.++... .....++|+ |||++++++...++++.++|..+.+.+..+... |.. .+..+..+++
T Consensus 230 ~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 230 PTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp CCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred CcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC
Confidence 8888888765 456899999 699955555566799999999998887765311 222 6778888888
Q ss_pred CCEE-EEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee-CCCcEEEEEccccccceeecc-c
Q psy14906 260 EPLL-VTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA-GDSTLRIFNTKSETSNKNLGI-A 336 (583)
Q Consensus 260 ~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~ 336 (583)
+..+ +....+|.|.++|+... ....+..+ ........+.|+| ++++++++. .++.|.++|+.+++....+.. .
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~--~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDL--NNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCS--SEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEecCCCeEEEEecCCC--ccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 6654 44455688888865421 11222222 2234456788997 788877665 578999999988765433211 0
Q ss_pred hhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCce
Q psy14906 337 SANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPT 416 (583)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 416 (583)
. ..|...-.
T Consensus 385 ~-----------------------------------------------------------------------~Phpg~g~ 393 (567)
T 1qks_A 385 Q-----------------------------------------------------------------------TPHPGRGA 393 (567)
T ss_dssp S-----------------------------------------------------------------------SBCCTTCE
T ss_pred c-----------------------------------------------------------------------CCCCccce
Confidence 0 00001111
Q ss_pred EEEEccCCcEEE-EEe-cCceEEEEEccc-------CccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec-------C
Q psy14906 417 CVYITHCGNFVL-IGY-SSGHVDRFNIQS-------GAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN-------D 480 (583)
Q Consensus 417 ~~~~s~~~~~l~-~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------d 480 (583)
. -++|++..+. ++. .++.|.++|..+ .+.+..+ ......-..+..+|++++|..... .
T Consensus 394 ~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i-----~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~ 467 (567)
T 1qks_A 394 N-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF-----PALGGGSLFIKTHPNSQYLYVDATLNPEAEIS 467 (567)
T ss_dssp E-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-----ECSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred e-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE-----ecCCCCCEEEEeCCCCCeEEEecCCCCCcccC
Confidence 2 2578755444 443 468999999987 3344444 222233345778999998887652 3
Q ss_pred CcEEEEEccCCC----CCceEEee---------ccCCeeeEEeccCCcEEEEEe-----CCceEEEEEccccceEEeecc
Q psy14906 481 QTVKVWHFKQTG----KPPLRSIK---------LDNGISFFRTHQESSMLAVCL-----DDFTVNIIDIDTCTIIRKLSG 542 (583)
Q Consensus 481 g~i~iwd~~~~~----~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~ 542 (583)
.+|.++|+.+.. ......+. ....+..+.|+|+|+++.++. .++.|.++|.++++++.+++.
T Consensus 468 ~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 468 GSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp TCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 589999998761 12223332 134688999999999877763 378999999999999888875
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.85 E-value=2e-19 Score=184.94 Aligned_cols=328 Identities=9% Similarity=-0.028 Sum_probs=208.1
Q ss_pred cCCcceEEEeeCCCCCEEEEE--ecCCeEEEEEccCCceeEEEeccCCCeE---------EEEEe--cCCCC-EEEEEcC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVG--LSNKKIILHNILTDESLMEFIQTWGPVT---------ALSFR--TDGPP-MMVSGSN 225 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~l~s~~~ 225 (583)
+|...+..++|++++-+++.. ..++...||....+.....+..+...+. ...|+ |||+. ++++...
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 678899999999876666666 5578899999765666677777766666 66676 99995 4445445
Q ss_pred CCcEEEEeCC--C-Ceehhhhhhc-----cccceEEEEEecCCCEEEEEeCC----------CeEEEEEccCCC-CCcee
Q psy14906 226 TGHLTVWNLE--D-RQVENQIKKA-----HRKVVTGAHFLYNEPLLVTSSPD----------NTLKLWIFDKAD-GNGRL 286 (583)
Q Consensus 226 dg~i~vwd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d----------~~i~~w~~~~~~-~~~~~ 286 (583)
+..|.++++. . ++ ...+ .. |...+..++|+|||+.|++++.+ ..|.+|+++... .....
T Consensus 101 ~~~l~~~~~~~~g~~~-~~~l-~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAV-PRPL-TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp TCCEEEECTTSTTCCC-CEEC-SCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred CCeEEEEcCCCCCCCC-CEec-cCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 6778888876 2 43 3333 23 56788999999999999988876 578888664310 00022
Q ss_pred eEEec-cCCCCCeeEEEeeCCCCEEEEeeCC--------CcEEEEEcc-ccc--cceeeccchhhhhhhhhhcchhcccc
Q psy14906 287 LRIRE-GHSAPPNYIQFYGNSSDNILSAAGD--------STLRIFNTK-SET--SNKNLGIASANRNNLKRKNRLEKMNE 354 (583)
Q Consensus 287 ~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (583)
...+. .+...+..++|+| ||++|+.++.+ ..|++||+. ++. ....+
T Consensus 179 ~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l--------------------- 236 (662)
T 3azo_A 179 VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL--------------------- 236 (662)
T ss_dssp SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE---------------------
T ss_pred eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe---------------------
Confidence 34444 5556778899998 89999887754 368888876 341 11110
Q ss_pred ccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCc
Q psy14906 355 KFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSG 434 (583)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 434 (583)
...+...+..+.|+|||++++++..++
T Consensus 237 -----------------------------------------------------~~~~~~~~~~~~~spdg~l~~~~~~~~ 263 (662)
T 3azo_A 237 -----------------------------------------------------LGGPEEAIAQAEWAPDGSLIVATDRTG 263 (662)
T ss_dssp -----------------------------------------------------EEETTBCEEEEEECTTSCEEEEECTTS
T ss_pred -----------------------------------------------------CCCCCceEcceEECCCCeEEEEECCCC
Confidence 000114577899999999888888788
Q ss_pred --eEEEEEcccCccccccCCCCCCCcccC--------eeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeecc-C
Q psy14906 435 --HVDRFNIQSGAHRGSYGHDNQPGHVGG--------VRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLD-N 503 (583)
Q Consensus 435 --~i~i~d~~~~~~~~~~~~~~~~~h~~~--------v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~ 503 (583)
.|++||+.+++..... ..+... +..++|+|++++++++.. +.++||.++... ..+..+..+ .
T Consensus 264 ~~~l~~~~~~~~~~~~l~-----~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~-~~~~~l~~~~~ 336 (662)
T 3azo_A 264 WWNLHRVDPATGAATQLC-----RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES-GELVDAAGPWT 336 (662)
T ss_dssp SCEEEEECTTTCCEEESS-----CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT-TEEEECCSSCC
T ss_pred CeEEEEEECCCCceeecc-----cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC-CcEEEecCCCC
Confidence 6777777666654433 222221 567899999999999998 999999554321 224444433 3
Q ss_pred CeeeEEeccCCc--EEEEEeCCc--eEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeEEEEe
Q psy14906 504 GISFFRTHQESS--MLAVCLDDF--TVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572 (583)
Q Consensus 504 ~v~~~~~s~~~~--~l~~~~~dg--~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~ 572 (583)
.+..+ +++++. +++.++.+. .|+++|+.+++.......|...+....+++.....+.+..+..|..|-
T Consensus 337 ~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~ 408 (662)
T 3azo_A 337 EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI 408 (662)
T ss_dssp EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence 45555 145554 344445554 566667777775544444544444445544444444443333555554
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=3.3e-20 Score=178.33 Aligned_cols=295 Identities=11% Similarity=-0.005 Sum_probs=191.0
Q ss_pred EccCCCEEEEEeCC---CcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccC
Q psy14906 117 ILPFGPHLISVDEE---SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILT 193 (583)
Q Consensus 117 is~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~ 193 (583)
++|||++|+.+... ..|.+||+.+++...... ........+.|+|||+.|+.++.++.|++||+.+
T Consensus 43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-----------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 43 FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-----------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-----------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-----------CCCCccccceECCCCCEEEEEEcCCcEEEEECCC
Confidence 49999998877543 478899998887543322 2222233478999999999999999999999998
Q ss_pred CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEE-----eC
Q psy14906 194 DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTS-----SP 268 (583)
Q Consensus 194 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-----~~ 268 (583)
++.......+.. |+++++ .|+....++...+|.. .+.|+|+++.++.. ..
T Consensus 112 ~~~~~~~~~~~~------~~~~g~-~l~~~~~~~~~~~~~~------------------~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 112 LEEQVIYTVDEE------WKGYGT-WVANSDCTKLVGIEIL------------------KRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp CCEEEEEECCTT------EEEEEE-EEECTTSSEEEEEEEE------------------GGGCCCCCSHHHHHHHHHTCC
T ss_pred CCcEEEEecccc------cCCCCC-EEEeccCCcccccccc------------------ccccCCCCcceeeeeeccCCC
Confidence 887666655533 778887 6776666655555431 23467888877654 35
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC------CcEEEEEccccccceeeccchhhhhh
Q psy14906 269 DNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD------STLRIFNTKSETSNKNLGIASANRNN 342 (583)
Q Consensus 269 d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~ 342 (583)
+..|.+|+++ .+. .. .+..+...+..+.|+|.+++.|+..+.+ ..|.+||+..+.......
T Consensus 167 ~~~l~~~d~~--~g~--~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-------- 233 (396)
T 3c5m_A 167 TCRLIKVDIE--TGE--LE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-------- 233 (396)
T ss_dssp CEEEEEEETT--TCC--EE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC--------
T ss_pred cceEEEEECC--CCc--EE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec--------
Confidence 5677888654 222 22 2224566788999997456666665543 346667765432111000
Q ss_pred hhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc
Q psy14906 343 LKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH 422 (583)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 422 (583)
......+..++|+|
T Consensus 234 ------------------------------------------------------------------~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 234 ------------------------------------------------------------------HAEGESCTHEFWIP 247 (396)
T ss_dssp ------------------------------------------------------------------CCTTEEEEEEEECT
T ss_pred ------------------------------------------------------------------cCCCccccceEECC
Confidence 00002366789999
Q ss_pred CCcEEEEEecC-----ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC-CCcEEEEee----------------cC
Q psy14906 423 CGNFVLIGYSS-----GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN-LNQIVISGG----------------ND 480 (583)
Q Consensus 423 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~----------------~d 480 (583)
||++|+..+.+ +.|++||+.+++....... .+ .. +.|+| |++++++++ .+
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---PP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---CS----EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---CC----CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 99988777554 5599999988765433211 12 22 89999 999888754 34
Q ss_pred CcEEEEEccCCCCCceEEeeccC-----------CeeeEEeccCCcEEEEEeC-Cce--EEEEEccccce
Q psy14906 481 QTVKVWHFKQTGKPPLRSIKLDN-----------GISFFRTHQESSMLAVCLD-DFT--VNIIDIDTCTI 536 (583)
Q Consensus 481 g~i~iwd~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~~ 536 (583)
..|++||+.++ +......+.. .+..++|+|||+.|+..+. ++. |+.+++.+++.
T Consensus 320 ~~i~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 320 PFLYVLNTKAK--SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CEEEEEETTTT--BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred CcEEEEecccC--ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 78999999877 4433333333 2567899999998887765 444 44555555544
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=4.5e-19 Score=182.41 Aligned_cols=291 Identities=10% Similarity=0.019 Sum_probs=191.0
Q ss_pred EeccCCCeEEEEEecCCCCEEEEE--cCCCcEEEEeCCCCeehhhhhhccccceE---------EEEEe--cCCCE-EEE
Q psy14906 200 FIQTWGPVTALSFRTDGPPMMVSG--SNTGHLTVWNLEDRQVENQIKKAHRKVVT---------GAHFL--YNEPL-LVT 265 (583)
Q Consensus 200 ~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~s 265 (583)
+.+|...+..++|++++- +++.. +.++...||....+.....+ ..|...+. ...|+ |||+. |+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 456778999999998765 55555 55788999986444444444 34555555 56666 99998 776
Q ss_pred EeCCCeEEEEEccCCCCCc-eeeEEecc-----CCCCCeeEEEeeCCCCEEEEeeCC----------CcEEEEEccc---
Q psy14906 266 SSPDNTLKLWIFDKADGNG-RLLRIREG-----HSAPPNYIQFYGNSSDNILSAAGD----------STLRIFNTKS--- 326 (583)
Q Consensus 266 ~~~d~~i~~w~~~~~~~~~-~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~--- 326 (583)
++.. ...||.++... .+ .....+.. |...+..++|+| ||+.|++++.+ ..|++||+.+
T Consensus 97 ~~~~-~~~l~~~~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 97 THFG-DQRLYAFEPDA-PGGAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EBTT-TCCEEEECTTS-TTCCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EECC-CCeEEEEcCCC-CCCCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 6542 34455445430 01 12333444 556788999998 89999988876 4677777765
Q ss_pred ---cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeee
Q psy14906 327 ---ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLV 403 (583)
Q Consensus 327 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 403 (583)
+.. ..+.
T Consensus 174 ~~~~~~-~~l~--------------------------------------------------------------------- 183 (662)
T 3azo_A 174 ADRSAV-RELS--------------------------------------------------------------------- 183 (662)
T ss_dssp TCGGGS-EESS---------------------------------------------------------------------
T ss_pred ccCCce-eEEE---------------------------------------------------------------------
Confidence 221 1110
Q ss_pred cccccccCCCCceEEEEccCCcEEEEEecC--------ceEEEEEcc-cC---ccccccCCCCCCCcccCeeEEEEeCCC
Q psy14906 404 PERCKQAKQSKPTCVYITHCGNFVLIGYSS--------GHVDRFNIQ-SG---AHRGSYGHDNQPGHVGGVRGVVSDNLN 471 (583)
Q Consensus 404 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~~h~~~v~~~~~s~~~ 471 (583)
..+...+..++|+|||++|+..+.+ ..|++||+. ++ +..... ..|...+..++|+|||
T Consensus 184 -----~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 184 -----DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAPDG 253 (662)
T ss_dssp -----CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECTTS
T ss_pred -----ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceEcceEECCCC
Confidence 0001345668899999999987754 479999998 56 333332 3457889999999999
Q ss_pred cEEEEeecCC--cEEEEEccCCCCCceEEeeccCC---------eeeEEeccCCcEEEEEeCCceEEEE--EccccceEE
Q psy14906 472 QIVISGGNDQ--TVKVWHFKQTGKPPLRSIKLDNG---------ISFFRTHQESSMLAVCLDDFTVNII--DIDTCTIIR 538 (583)
Q Consensus 472 ~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~~dg~i~i~--d~~~~~~~~ 538 (583)
++++++..++ .|.+||+.++ +.......+.. +..++|+|++++++++.. +.++|| |+.+++ +.
T Consensus 254 ~l~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~ 329 (662)
T 3azo_A 254 SLIVATDRTGWWNLHRVDPATG--AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LV 329 (662)
T ss_dssp CEEEEECTTSSCEEEEECTTTC--CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EE
T ss_pred eEEEEECCCCCeEEEEEECCCC--ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EE
Confidence 9888888888 5566665555 44433333221 567899999999999998 999999 555454 67
Q ss_pred eecccccceeeE-EecCCCcEEEEEeCCC--eEEEEeCCCcccc
Q psy14906 539 KLSGHMGQLTDA-DFSPDSRWLITASMDC--TIRVWDIPSSQLI 579 (583)
Q Consensus 539 ~~~~h~~~v~~l-~~s~d~~~l~s~~~d~--~i~vw~~~~~~~~ 579 (583)
.+..|...+..+ +++.+.-++++++.+. .|.+||+.+++..
T Consensus 330 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 330 DAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp ECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 788787778777 5544333344555554 4666677677653
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=1.1e-17 Score=152.53 Aligned_cols=245 Identities=18% Similarity=0.244 Sum_probs=177.2
Q ss_pred ccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEec------cCCCCCeeEEEeeCCCCEEEEeeC-CCc
Q psy14906 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIRE------GHSAPPNYIQFYGNSSDNILSAAG-DST 318 (583)
Q Consensus 246 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~-dg~ 318 (583)
++-..+.+++++++++++++...++.|.+|+.+ +..+..+. ++...+..+++.+.++..+++... ++.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-----g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-----GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-----SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-----CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 455678999999999988888889999999543 33344442 233567889996435655555533 788
Q ss_pred EEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccccc
Q psy14906 319 LRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMD 398 (583)
Q Consensus 319 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 398 (583)
|.+|| .+++....+..
T Consensus 102 i~~~d-~~g~~~~~~~~--------------------------------------------------------------- 117 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGA--------------------------------------------------------------- 117 (286)
T ss_dssp EEEEC-TTSCEEEEECT---------------------------------------------------------------
T ss_pred EEEEC-CCCcEEEEecC---------------------------------------------------------------
Confidence 99998 34433222100
Q ss_pred ceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEee
Q psy14906 399 DMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG 478 (583)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 478 (583)
.....+..++++|+|+++++...++.|.+||.. ++....+.. ..+...+.+++++|+++++++..
T Consensus 118 -----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 118 -----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp -----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEECSSSEEEEEEG
T ss_pred -----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC---CCccCCcEEEEECCCCCEEEEEC
Confidence 001357889999999988887788999999964 554444421 24456789999999999888888
Q ss_pred cCCcEEEEEccCCCCCceEEeecc---CCeeeEEeccCCcEEEEEeCCc-eEEEEEccccceEEeeccccc--ceeeEEe
Q psy14906 479 NDQTVKVWHFKQTGKPPLRSIKLD---NGISFFRTHQESSMLAVCLDDF-TVNIIDIDTCTIIRKLSGHMG--QLTDADF 552 (583)
Q Consensus 479 ~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~h~~--~v~~l~~ 552 (583)
.++.|++||... +.+..+... ..+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.++++
T Consensus 183 ~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 899999999754 455555433 4688999999999888888776 9999995 4666666665443 4779999
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCcccc
Q psy14906 553 SPDSRWLITASMDCTIRVWDIPSSQLI 579 (583)
Q Consensus 553 s~d~~~l~s~~~d~~i~vw~~~~~~~~ 579 (583)
+|+|+++++ +.|++|++|++....++
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~~~~~~pv 284 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYRYVQLAPV 284 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred CCCCcEEEE-CCCCeEEEEEccccccc
Confidence 999987777 67999999999776554
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=3.5e-17 Score=153.97 Aligned_cols=272 Identities=10% Similarity=0.073 Sum_probs=179.3
Q ss_pred CcceEEEeeCCCCCEEEEEe---------cCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC---C--
Q psy14906 162 NSCVNVLEPSPVVDIIGVGL---------SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT---G-- 227 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g-- 227 (583)
...+...++ ||+.++... .++.|.+||+.+++... + ..+..++|+|||+ .|+..+.+ +
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~-~la~~~~~~~~~~~ 85 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGK-KIAFMRANEEKKVS 85 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSS-EEEEEEEETTTTEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCC-EEEEEEeccCCCcc
Confidence 345677777 899887653 25679999998876543 3 4688999999999 56655433 3
Q ss_pred cEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCC---------------------------CeEEEEEccCC
Q psy14906 228 HLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPD---------------------------NTLKLWIFDKA 280 (583)
Q Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------------------------~~i~~w~~~~~ 280 (583)
.|.+||+.+++..... . +.. +..++|+|||+.|+.++.+ ..|.+|+++
T Consensus 86 ~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~-- 160 (347)
T 2gop_A 86 EIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE-- 160 (347)
T ss_dssp EEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT--
T ss_pred eEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC--
Confidence 3888899887765544 2 333 9999999999988887632 456677553
Q ss_pred CCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCC-------cEEEEEccccccceeeccchhhhhhhhhhcchhccc
Q psy14906 281 DGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDS-------TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 281 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
. ++.+..+.. . .+..+.|+| ++ .++++..++ ...+|.+.+++. ..+
T Consensus 161 ~--~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l-------------------- 213 (347)
T 2gop_A 161 S--EEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKM-------------------- 213 (347)
T ss_dssp T--TEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEE--------------------
T ss_pred C--CeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce-EEe--------------------
Confidence 2 233233333 3 788999997 77 777765542 233443322211 000
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS 433 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 433 (583)
. . + ..+..+ +|||++|+..+.+
T Consensus 214 ------------------------------------~-------------~------~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 214 ------------------------------------F-------------E------K-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp ------------------------------------E-------------E------E-ESEEEE--EECSSCEEEEECC
T ss_pred ------------------------------------c-------------c------C-cceeeE--CCCCCEEEEEEcc
Confidence 0 0 0 112233 8999988877643
Q ss_pred --------ceEEEEEcccCccccccCCCCCCCcccCeeE-EEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCC
Q psy14906 434 --------GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRG-VVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNG 504 (583)
Q Consensus 434 --------g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 504 (583)
..|++|| +++..... ..|...+.. +.|+ ++ ++++++.++.+++| +.++ +..........
T Consensus 236 ~~~~~~~~~~l~~~d--~~~~~~l~-----~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g--~~~~~~~~~~~ 303 (347)
T 2gop_A 236 EKKYMSEHNKLYIYD--GKEVMGIL-----DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG--EIKPIAKGRHW 303 (347)
T ss_dssp SSSCCCSSCEEEEEC--SSCEEESS-----TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS--SEEEEECSSSE
T ss_pred ccCCccccceEEEEC--CCceEecc-----ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC--ceEEEecCCCe
Confidence 4688888 55544333 466778886 9999 88 88999999999999 8854 55555555677
Q ss_pred eeeEEeccCCcEEEEEeCCceE-EEEEccccceEEeecccccce
Q psy14906 505 ISFFRTHQESSMLAVCLDDFTV-NIIDIDTCTIIRKLSGHMGQL 547 (583)
Q Consensus 505 v~~~~~s~~~~~l~~~~~dg~i-~i~d~~~~~~~~~~~~h~~~v 547 (583)
+.+++|+| .++++++.++.. .+|.++ ++ ...+..|...+
T Consensus 304 v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~ 343 (347)
T 2gop_A 304 IMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI 343 (347)
T ss_dssp EEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred EEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence 89999999 677777766654 777766 54 44566665543
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=1.1e-17 Score=155.50 Aligned_cols=255 Identities=11% Similarity=0.068 Sum_probs=183.5
Q ss_pred CCCeEEEEEecCCCCEEEEEcCC------------------------CcEEEEeCCCCeehhhhhhccccceEEEEEecC
Q psy14906 204 WGPVTALSFRTDGPPMMVSGSNT------------------------GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYN 259 (583)
Q Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 259 (583)
-+.+.+++++|+|+ ++++...+ +.|.+||..+++.+..+..++-.....++++|+
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 36799999999998 77777766 479999999888876653345567899999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCceeeEEe---------ccCCCCCeeEEEeeCCCCEEEEee-CCCcEEEEEcccccc
Q psy14906 260 EPLLVTSSPDNTLKLWIFDKADGNGRLLRIR---------EGHSAPPNYIQFYGNSSDNILSAA-GDSTLRIFNTKSETS 329 (583)
Q Consensus 260 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 329 (583)
|+++++...++.|++|+.+. ....+..+ .++...+..++++|.++.++++.+ .++.|++||. ++..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g---~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHS---KEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTTC---SSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCE
T ss_pred CCEEEEECCCCEEEEEeCCC---CeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCE
Confidence 99888888889999996532 11133443 234446789999975677777775 6899999994 4443
Q ss_pred ceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccc
Q psy14906 330 NKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQ 409 (583)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 409 (583)
...+..... .+ . ...
T Consensus 178 ~~~~~~~g~--------------------------------------------~~---------~------------~~~ 192 (329)
T 3fvz_A 178 VTQWGEESS--------------------------------------------GS---------S------------PRP 192 (329)
T ss_dssp EEEECEECC--------------------------------------------SS---------S------------CCT
T ss_pred EEEeccCCC--------------------------------------------CC---------C------------CCC
Confidence 332211000 00 0 000
Q ss_pred cCCCCceEEEEccC-CcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC------CCcEEEEeecCCc
Q psy14906 410 AKQSKPTCVYITHC-GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN------LNQIVISGGNDQT 482 (583)
Q Consensus 410 ~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~dg~ 482 (583)
.....+..++++|+ ++++++...++.|++|+..+++.+..+.. ..+...+.+++++| +++..++...+..
T Consensus 193 ~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~---~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~ 269 (329)
T 3fvz_A 193 GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH---ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQ 269 (329)
T ss_dssp TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC---TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCC
T ss_pred cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec---cccCCCcceeeecCCEEEEeCCCEEeccCCCcE
Confidence 00035789999998 77777778899999999998888877643 35667888999999 3333333334558
Q ss_pred EEEEEccCCCCCceEEee----ccCCeeeEEeccCCcEEEEEeCCceEEEEEccc
Q psy14906 483 VKVWHFKQTGKPPLRSIK----LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533 (583)
Q Consensus 483 i~iwd~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 533 (583)
|++|++.++ +.+..+. +...+..++++|+|.++++...++.|++|++..
T Consensus 270 v~~~~~~~g--~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 270 GFVMNFSSG--EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEETTTC--CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEEcCCC--eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999999988 7777763 335689999999998888888899999999864
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=3.1e-17 Score=152.48 Aligned_cols=250 Identities=11% Similarity=0.072 Sum_probs=184.4
Q ss_pred CCcceEEEeeCCCCCEEEEEecC------------------------CeEEEEEccCCceeEEEe-ccCCCeEEEEEecC
Q psy14906 161 WNSCVNVLEPSPVVDIIGVGLSN------------------------KKIILHNILTDESLMEFI-QTWGPVTALSFRTD 215 (583)
Q Consensus 161 ~~~~i~~~~~s~~~~~l~~~~~d------------------------~~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~ 215 (583)
.-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+. .+......++++|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 35679999999999999888777 479999999898877665 34457899999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCe-ehhhhh--------hccccceEEEEEec-CCCEEEEEe-CCCeEEEEEccCCCCCc
Q psy14906 216 GPPMMVSGSNTGHLTVWNLEDRQ-VENQIK--------KAHRKVVTGAHFLY-NEPLLVTSS-PDNTLKLWIFDKADGNG 284 (583)
Q Consensus 216 ~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~-~~~~l~s~~-~d~~i~~w~~~~~~~~~ 284 (583)
|+ ++++...++.|++||..... .+..+. .++-.....++++| ++.++++.+ .++.|++|+. .+
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-----~g 175 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-----SG 175 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-----TS
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-----CC
Confidence 99 88888889999999986542 333331 13344688999999 788888876 6899999953 34
Q ss_pred eeeEEecc----------CCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhcccc
Q psy14906 285 RLLRIREG----------HSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNE 354 (583)
Q Consensus 285 ~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (583)
..+..+.. +-..+..++++|..+.++++...++.|++||..+++....+....
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~----------------- 238 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS----------------- 238 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-----------------
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-----------------
Confidence 45555432 223478999997337777777788999999998776554432110
Q ss_pred ccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc------CCcEEE
Q psy14906 355 KFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH------CGNFVL 428 (583)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~ 428 (583)
....+..++++| +|+..+
T Consensus 239 --------------------------------------------------------~~~~~~~~~~~pg~~~~~~g~~~v 262 (329)
T 3fvz_A 239 --------------------------------------------------------FGRNVFAISYIPGFLFAVNGKPYF 262 (329)
T ss_dssp --------------------------------------------------------TTTCEEEEEEETTEEEEEECCCCT
T ss_pred --------------------------------------------------------cCCCcceeeecCCEEEEeCCCEEe
Confidence 003455667777 344333
Q ss_pred EEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 429 IGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 429 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
+...+..|++|+..+++.+..+... ..+...+.+++++|+|.++++...++.|++|++...
T Consensus 263 ~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 263 GDQEPVQGFVMNFSSGEIIDVFKPV--RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp TCSCCCCEEEEETTTCCEEEEECCS--SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred ccCCCcEEEEEEcCCCeEEEEEcCC--CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 3444568999999999988876322 367778999999999988888889999999998764
No 179
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.80 E-value=8.6e-17 Score=147.89 Aligned_cols=301 Identities=10% Similarity=-0.003 Sum_probs=208.3
Q ss_pred ccCCCEEEEEeC-----CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe----------c
Q psy14906 118 LPFGPHLISVDE-----ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL----------S 182 (583)
Q Consensus 118 s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----------~ 182 (583)
.|+++.++.... ++.|.+.|..+++.+.++. ....+ . ++++|||++|.++. .
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-----------vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-----------GGFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-----------ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-----------CCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 799998888765 6799999999999999987 33344 4 99999999887775 3
Q ss_pred CCeEEEEEccCCceeEEEeccC-------CCeEEEEEecCCCCEEEEEc--CCCcEEEEeCCCCeehhhhhhccccceEE
Q psy14906 183 NKKIILHNILTDESLMEFIQTW-------GPVTALSFRTDGPPMMVSGS--NTGHLTVWNLEDRQVENQIKKAHRKVVTG 253 (583)
Q Consensus 183 d~~i~iw~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 253 (583)
++.|.+||..+++.+.++.-.. .....++|+|||+ +++++. .++.|.++|+.+++.+.++... + . .
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~-~ 182 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C-Y 182 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E-E
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c-c
Confidence 5789999999999998876331 2467899999999 555554 3689999999999998887221 1 1 2
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccC----CCCCe-eEEEeeCCCCEEEEeeCCCcEEEEEccccc
Q psy14906 254 AHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGH----SAPPN-YIQFYGNSSDNILSAAGDSTLRIFNTKSET 328 (583)
Q Consensus 254 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~----~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 328 (583)
..+....+.+++.+.||.+.+.++... ++.......+ ..++. ...|.+.++++++ .+.+|.+.+.|+.+..
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~---g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVAFGTE---GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSS---SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred eeecCCCceeEEECCCCCEEEEECCCC---CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence 234344566778888888888866432 1211111111 12221 2466544665544 5567999999987653
Q ss_pred c--ceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccc
Q psy14906 329 S--NKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPER 406 (583)
Q Consensus 329 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 406 (583)
. ...+....... .
T Consensus 259 ~~v~~~~~~~~~~~-----------------------------------------------------------------~ 273 (386)
T 3sjl_D 259 AKFLPAVEALTEAE-----------------------------------------------------------------R 273 (386)
T ss_dssp CEECCCEESSCHHH-----------------------------------------------------------------H
T ss_pred ceeecceecccccc-----------------------------------------------------------------c
Confidence 2 11110000000 0
Q ss_pred ccccCCCCceEEEEccCCcEEEEEec----------CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc-EEE
Q psy14906 407 CKQAKQSKPTCVYITHCGNFVLIGYS----------SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ-IVI 475 (583)
Q Consensus 407 ~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~ 475 (583)
...........++++++++.+++... .+.|.++|+.+++.+..+. -...+..+++++|++ +|+
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------vg~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------MGHEIDSINVSQDEKPLLY 347 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEEECSSSSCEEE
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE------CCCCcceEEECCCCCeEEE
Confidence 00000023446777999988888653 3679999999999998873 234788999999997 666
Q ss_pred Ee-ecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccC
Q psy14906 476 SG-GNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQE 513 (583)
Q Consensus 476 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 513 (583)
+. ..++.|.++|..++ +.+..+........|.+++|
T Consensus 348 ~tn~~~~~VsViD~~t~--k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 348 ALSTGDKTLYIHDAESG--EELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEETTTTEEEEEETTTC--CEEEEECCCCSSCCEEEECC
T ss_pred EEcCCCCeEEEEECCCC--cEEEEecCCCCCceeEECCc
Confidence 54 45899999999999 99999999888888888887
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=4.9e-17 Score=148.25 Aligned_cols=244 Identities=14% Similarity=0.150 Sum_probs=175.7
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEec------cCCCeEEEEEe-cCCCCEEEEEcC-CCcEEE
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQ------TWGPVTALSFR-TDGPPMMVSGSN-TGHLTV 231 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~~l~s~~~-dg~i~v 231 (583)
++-..+.+++++++++++++...++.|.+||.. ++.+..+.. +...+..+++. +++. ++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEE
Confidence 445678999999999988888889999999987 666666642 33578999995 6676 6666543 789999
Q ss_pred EeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEec--cCCCCCeeEEEeeCCCCE
Q psy14906 232 WNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIRE--GHSAPPNYIQFYGNSSDN 309 (583)
Q Consensus 232 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 309 (583)
|| .+++.+..+...+...+.+++++++|+++++...++.|.+|+. .+..+..+. .+...+..++++| +++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~p~~i~~~~-~g~l 177 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-----NGNVLHKFGCSKHLEFPNGVVVND-KQEI 177 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-----TSCEEEEEECTTTCSSEEEEEECS-SSEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-----CCCEEEEeCCCCccCCcEEEEECC-CCCE
Confidence 99 5566665553344567899999999998888777899999953 234444443 3445678999997 6877
Q ss_pred EEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEE
Q psy14906 310 ILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSL 389 (583)
Q Consensus 310 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 389 (583)
+++...++.|++||... +....+..
T Consensus 178 ~v~~~~~~~i~~~~~~g-~~~~~~~~------------------------------------------------------ 202 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYEG-QYLRQIGG------------------------------------------------------ 202 (286)
T ss_dssp EEEEGGGTEEEEEETTC-CEEEEESC------------------------------------------------------
T ss_pred EEEECCCCEEEEEcCCC-CEEEEEcc------------------------------------------------------
Confidence 77777789999999743 22111100
Q ss_pred eecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCc-eEEEEEcccCccccccCCCCCCCcccCeeEEEEe
Q psy14906 390 WSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSG-HVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSD 468 (583)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s 468 (583)
. .....+..++++++|+++++...++ .|.+|+. +++.+..+.. ......+.+++++
T Consensus 203 ---~----------------g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~---~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 203 ---E----------------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES---KVKHAQCFDVALM 259 (286)
T ss_dssp ---T----------------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE---SSCCSCEEEEEEE
T ss_pred ---C----------------CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc---cCCCCcceeEEEC
Confidence 0 0003577899999999888887776 9999995 4555555521 1223357899999
Q ss_pred CCCcEEEEeecCCcEEEEEccCC
Q psy14906 469 NLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 469 ~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
|+++++++ +.|+.|++|++...
T Consensus 260 ~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 260 DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcEEEE-CCCCeEEEEEcccc
Confidence 99987777 57899999998654
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=5.4e-17 Score=151.64 Aligned_cols=275 Identities=12% Similarity=0.116 Sum_probs=187.4
Q ss_pred CcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehh
Q psy14906 162 NSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVEN 241 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 241 (583)
...|.+++|++++..++....++.++.| .++....+..+...+.+++|+|+++ +++++..++.|.+||..+++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEE
Confidence 4557889999998888877788889999 4566677777767889999999998 88888889999999998876554
Q ss_pred hhhhccccceEEEEEecCCCEEEEEeCC----CeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeC--
Q psy14906 242 QIKKAHRKVVTGAHFLYNEPLLVTSSPD----NTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG-- 315 (583)
Q Consensus 242 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 315 (583)
.. ..+...+.+++++++++++++...+ +.|.+|+.+ ......+.....+...+..++++| +++.+++...
T Consensus 81 ~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~ 156 (333)
T 2dg1_A 81 PF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN--GDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGY 156 (333)
T ss_dssp EE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT--SCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCB
T ss_pred Ee-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC--CCEEEEEEccCccCCcccceEECC-CCCEEEEecccc
Confidence 33 3456789999999999988877666 678888543 222221111112345688999997 6776666543
Q ss_pred ----CCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEee
Q psy14906 316 ----DSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWS 391 (583)
Q Consensus 316 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 391 (583)
.+.|..+|..+++..... .
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~---------------------------------------------------------~ 179 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPII---------------------------------------------------------Q 179 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEE---------------------------------------------------------E
T ss_pred ccCCCceEEEEeCCCCEEEEee---------------------------------------------------------c
Confidence 234544544332211000 0
Q ss_pred cCcccccceeeecccccccCCCCceEEEEccCCcEEEEE-ecCceEEEEEccc-CccccccC---CCCCCCcccCeeEEE
Q psy14906 392 FYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIG-YSSGHVDRFNIQS-GAHRGSYG---HDNQPGHVGGVRGVV 466 (583)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~~---~~~~~~h~~~v~~~~ 466 (583)
....+..++++|+++.++++ ..++.|.+|+..+ +.....+. .....++ ..+..++
T Consensus 180 -------------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 180 -------------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp -------------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred -------------------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 00346789999999866554 5678999999864 33221110 0000122 4678899
Q ss_pred EeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccC-------CeeeEEeccCCcEEEEEeCCc
Q psy14906 467 SDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDN-------GISFFRTHQESSMLAVCLDDF 524 (583)
Q Consensus 467 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~dg 524 (583)
++++|+++++...++.|.+||.. + +.+..+.... .+.+++|+||++.|++++.++
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~-g--~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKR-G--YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTT-S--CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred ECCCCCEEEEEcCCCEEEEECCC-C--CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 99999988888778999999984 4 5555555442 588999999988777666653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=6.5e-17 Score=151.09 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=185.4
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCc
Q psy14906 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNG 284 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~ 284 (583)
..|.++.|++++. .++..+.++.++.| .++....+ ..+...+.+++|++++++++++..++.|.+|+.+ . +
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~--~--~ 76 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTI---TAEPWLEI-SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE--T--K 76 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEE---ECEEEEEE-ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT--T--C
T ss_pred cccceeeecCCcc-ceeEEeecccCccc---ccceeEEE-eccCccccCcEECCCCCEEEEECCCCEEEEEeCC--C--C
Confidence 5678889999887 56666778889999 34455555 4566677999999999988888888999999543 2 2
Q ss_pred eeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC----CcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCc
Q psy14906 285 RLLRIREGHSAPPNYIQFYGNSSDNILSAAGD----STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPP 360 (583)
Q Consensus 285 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (583)
+.......+...+.+++++| +++++++...+ +.|.+||..++.....+..
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------------- 130 (333)
T 2dg1_A 77 EIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------------------------- 130 (333)
T ss_dssp CEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-------------------------
T ss_pred cEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-------------------------
Confidence 32222324556789999997 78777776665 6888998776543211100
Q ss_pred cceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec------Cc
Q psy14906 361 VSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS------SG 434 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg 434 (583)
......+..++++|+|+++++... .+
T Consensus 131 ------------------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 131 ------------------------------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ------------------------------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred ------------------------------------------------CccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 000145788999999987776653 36
Q ss_pred eEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEE-EEeecCCcEEEEEccCCCCCceEEe------e--ccCCe
Q psy14906 435 HVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIV-ISGGNDQTVKVWHFKQTGKPPLRSI------K--LDNGI 505 (583)
Q Consensus 435 ~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~------~--~~~~v 505 (583)
.|..++..+++..... .+...+..++|+|+++.| ++...++.|.+|++.... ..+..+ . ....+
T Consensus 163 ~l~~~~~~~~~~~~~~------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~~~~ 235 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPII------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGHEGP 235 (333)
T ss_dssp EEEEECTTSCCEEEEE------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSSSEE
T ss_pred eEEEEeCCCCEEEEee------cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCCCCC
Confidence 6777776655443222 234457899999999855 455567899999996421 222211 1 12367
Q ss_pred eeEEeccCCcEEEEEeCCceEEEEEccccceEEeeccccc------ceeeEEecCCCcEEEEEeCC
Q psy14906 506 SFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMG------QLTDADFSPDSRWLITASMD 565 (583)
Q Consensus 506 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~------~v~~l~~s~d~~~l~s~~~d 565 (583)
..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+
T Consensus 236 ~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 236 DSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 88999999998888888899999998 4666666654433 68999999998777655554
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=2.2e-16 Score=146.43 Aligned_cols=286 Identities=9% Similarity=-0.015 Sum_probs=195.2
Q ss_pred CCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeE
Q psy14906 129 EESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVT 208 (583)
Q Consensus 129 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~ 208 (583)
.++.|.++|.++++....+...... .........+++. ++++.++...++.|.+||..+++.+.++... ....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~-----~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~p~ 87 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANG-----FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-TSPR 87 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHS-----SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-SSEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcC-----cccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-CCCc
Confidence 3789999999999876554210000 0122445677774 4555666667799999999999999988644 6789
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhcc----ccceEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCC
Q psy14906 209 ALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAH----RKVVTGAHFLYNEPLLVTSS-PDNTLKLWIFDKADGN 283 (583)
Q Consensus 209 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~ 283 (583)
.++++++++ ++++...++.|.+||..+++....+..+. ......+++ .++.++++.. .++.|.++|.. .
T Consensus 88 ~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~----t 161 (328)
T 3dsm_A 88 YIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE----T 161 (328)
T ss_dssp EEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT----T
T ss_pred EEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC----C
Confidence 999999985 66666578999999999998776652222 114556777 4444444433 48899999664 3
Q ss_pred ceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC----------CcEEEEEccccccceeeccchhhhhhhhhhcchhccc
Q psy14906 284 GRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD----------STLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 284 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
.+.+..+... .....+.++| ++++++++..+ +.|.++|..+++....+...
T Consensus 162 ~~~~~~i~~g-~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~----------------- 222 (328)
T 3dsm_A 162 DKVVDELTIG-IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK----------------- 222 (328)
T ss_dssp TEEEEEEECS-SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-----------------
T ss_pred CeEEEEEEcC-CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-----------------
Confidence 4555555432 3457888886 77766666554 68888888776543322100
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS 433 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 433 (583)
. ...+..++++|++++++++..
T Consensus 223 ----------------------------------------~-----------------g~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 223 ----------------------------------------L-----------------GDWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp ----------------------------------------T-----------------TCCCEEEEECTTSCEEEEESS-
T ss_pred ----------------------------------------C-----------------CCCceeEEEecCCCEEEEEcc-
Confidence 0 035789999999999988765
Q ss_pred ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC-CCcEEEEe----ecCCcEEEEEccCCCCCceEEeeccCCeeeE
Q psy14906 434 GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN-LNQIVISG----GNDQTVKVWHFKQTGKPPLRSIKLDNGISFF 508 (583)
Q Consensus 434 g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 508 (583)
.|.+||..+++....... ..+......++++| ++.++++. ..++.|.+||.. + +.+..+........+
T Consensus 245 -~v~~~d~~t~~~~~~~~~---~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g--~~~~~i~~G~~P~~~ 317 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFL---EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G--KLIDEFYVGIIPGAF 317 (328)
T ss_dssp -SEEEEETTCSSCCSSCSB---CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C--CEEEEEEEEESEEEE
T ss_pred -EEEEEECCCCceeeeeee---cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C--CEEEEEEeccCcceE
Confidence 899999988876422100 22246789999999 55666665 568899999998 6 788887766666666
Q ss_pred Eec
Q psy14906 509 RTH 511 (583)
Q Consensus 509 ~~s 511 (583)
+|-
T Consensus 318 ~~~ 320 (328)
T 3dsm_A 318 CWK 320 (328)
T ss_dssp EEE
T ss_pred EEe
Confidence 663
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=2e-16 Score=146.60 Aligned_cols=267 Identities=10% Similarity=0.096 Sum_probs=185.8
Q ss_pred CCCcEEEEeCCCCeehhhhhhc-----cccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCee
Q psy14906 225 NTGHLTVWNLEDRQVENQIKKA-----HRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNY 299 (583)
Q Consensus 225 ~dg~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~ 299 (583)
.++.|.+||.++++....+... .......+.+. +++++++...++.|.+||.. ..+.+..+.. ...+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~----t~~~~~~i~~-~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN----TFKEVGRITG-FTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT----TCCEEEEEEC-CSSEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc----ccEEEEEcCC-CCCCcE
Confidence 3789999999999876655221 22346777774 45566666667999999654 4555565543 456789
Q ss_pred EEEeeCCCCEEEEee-CCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEE
Q psy14906 300 IQFYGNSSDNILSAA-GDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIA 378 (583)
Q Consensus 300 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (583)
+++++ ++ .++.+. .++.|.+||..+++....+.....
T Consensus 89 i~~~~-~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---------------------------------------- 126 (328)
T 3dsm_A 89 IHFLS-DE-KAYVTQIWDYRIFIINPKTYEITGYIECPDM---------------------------------------- 126 (328)
T ss_dssp EEEEE-TT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------------------------------
T ss_pred EEEeC-CC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------------------------------
Confidence 99987 56 455554 789999999988765443311100
Q ss_pred EEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe--cCceEEEEEcccCccccccCCCCCC
Q psy14906 379 AIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY--SSGHVDRFNIQSGAHRGSYGHDNQP 456 (583)
Q Consensus 379 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~ 456 (583)
......+..+++ ++..++++. .++.|.++|..+++....+..
T Consensus 127 ------------------------------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~---- 170 (328)
T 3dsm_A 127 ------------------------------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI---- 170 (328)
T ss_dssp ------------------------------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----
T ss_pred ------------------------------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----
Confidence 000013445666 344444444 488999999999988776631
Q ss_pred CcccCeeEEEEeCCCcEEEEeecC----------CcEEEEEccCCCCCceEEeecc--CCeeeEEeccCCcEEEEEeCCc
Q psy14906 457 GHVGGVRGVVSDNLNQIVISGGND----------QTVKVWHFKQTGKPPLRSIKLD--NGISFFRTHQESSMLAVCLDDF 524 (583)
Q Consensus 457 ~h~~~v~~~~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg 524 (583)
......++++|+|++++++..+ +.|.++|..+. +....+... ..+..++++|+++.|+++..
T Consensus 171 --g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 171 --GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF--TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp --SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT--EEEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred --CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC--eEEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence 2345788999999988777654 78999999887 666666543 46899999999999888765
Q ss_pred eEEEEEccccceEEe--ecccccceeeEEecC-CCcEEEEE----eCCCeEEEEeCCCccccccc
Q psy14906 525 TVNIIDIDTCTIIRK--LSGHMGQLTDADFSP-DSRWLITA----SMDCTIRVWDIPSSQLIDCF 582 (583)
Q Consensus 525 ~i~i~d~~~~~~~~~--~~~h~~~v~~l~~s~-d~~~l~s~----~~d~~i~vw~~~~~~~~~~~ 582 (583)
.|.+||..+++.... +..+......++++| ++...++. ..++.|.+||.+ |+++.++
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 899999998876421 222245688999999 55555665 578999999998 9988765
No 185
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.77 E-value=6.1e-16 Score=142.25 Aligned_cols=304 Identities=12% Similarity=0.088 Sum_probs=207.7
Q ss_pred EEeeCCCCCEEEEEec-----CCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEc---------CCCcEEEE
Q psy14906 167 VLEPSPVVDIIGVGLS-----NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGS---------NTGHLTVW 232 (583)
Q Consensus 167 ~~~~s~~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~dg~i~vw 232 (583)
.....|+++.+.+... ++.|.++|..+++.+.++.....+ . ++++|||++++++.. .++.|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3566799998888765 579999999999999998865455 4 999999995444432 35789999
Q ss_pred eCCCCeehhhhhhcc------ccceEEEEEecCCCEEEEEeC--CCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEee
Q psy14906 233 NLEDRQVENQIKKAH------RKVVTGAHFLYNEPLLVTSSP--DNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYG 304 (583)
Q Consensus 233 d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 304 (583)
|..+++.+..+..+. ......++|+|||++++.+.. ++.|.++|+. ..+.+.++.... +....|
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~----t~~vv~tI~v~g----~~~~~P 186 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE----GKAFKRMLDVPD----CYHIFP 186 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT----TTEEEEEEECCS----EEEEEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC----CCcEEEEEECCC----cceeec
Confidence 999998887763221 124557899999999888864 6899999765 456666664211 223345
Q ss_pred CCCCEEEEeeCCCcEEEEEccc-cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecC
Q psy14906 305 NSSDNILSAAGDSTLRIFNTKS-ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTG 383 (583)
Q Consensus 305 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (583)
...+.+++.+.||.+.+.++.+ ++......
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~------------------------------------------------- 217 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHT------------------------------------------------- 217 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEEC-------------------------------------------------
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeec-------------------------------------------------
Confidence 4567888889999999999876 33211000
Q ss_pred CceEEEeecCcccccceeeecccccccCCCCc-eEEEE-ccCCcEEEEEecCceEEEEEcccCcc--ccccCCCC-----
Q psy14906 384 KNKVSLWSFYKSKMDDMFLVPERCKQAKQSKP-TCVYI-THCGNFVLIGYSSGHVDRFNIQSGAH--RGSYGHDN----- 454 (583)
Q Consensus 384 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~----- 454 (583)
..++... ..+ ....| .++|++++ .+.+|.|+++|+.++.. ...+....
T Consensus 218 ----~~~~~~~------------------~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 218 ----EVFHPED------------------EFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp ----CCCSCTT------------------SCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred ----ceecccc------------------ccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence 0000000 011 11244 36776655 44579999999876542 22221000
Q ss_pred CCCcccCeeEEEEeCCCcEEEEeec----------CCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCc-EEEEEe-C
Q psy14906 455 QPGHVGGVRGVVSDNLNQIVISGGN----------DQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESS-MLAVCL-D 522 (583)
Q Consensus 455 ~~~h~~~v~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~ 522 (583)
..-.......++++++++.++.... ...|.+.|+.+. +.+..+.....+..+++++|++ +|++.. .
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERLAKFEMGHEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEEEEEECEEEECSSSSCEEEEEETT
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--eEEEEEECCCCcceEEECCCCCeEEEEEcCC
Confidence 0012234456788999887776542 246999999998 9999998888999999999997 666654 4
Q ss_pred CceEEEEEccccceEEeecccccceeeEEecCC
Q psy14906 523 DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPD 555 (583)
Q Consensus 523 dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 555 (583)
++.|.++|..+++.+.++.. .+.-+.|.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECC-CCSSCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecC-CCCCceeEECCc
Confidence 89999999999999988874 344566677766
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=5.1e-16 Score=160.33 Aligned_cols=281 Identities=11% Similarity=0.090 Sum_probs=181.6
Q ss_pred cCCCCEEEEEcCCC----cEEEEeCCCCeeh-----hhhhhccccceEEEEEecCCCEEEEEeCCC-----eEEEEEccC
Q psy14906 214 TDGPPMMVSGSNTG----HLTVWNLEDRQVE-----NQIKKAHRKVVTGAHFLYNEPLLVTSSPDN-----TLKLWIFDK 279 (583)
Q Consensus 214 ~~~~~~l~s~~~dg----~i~vwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~ 279 (583)
|+|++++++-...+ .+.+.+...++.. ..+..+|...+..++|||||++|+.+..++ .|++||++
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~- 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD- 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC-
Confidence 88884444443322 3444454444321 123234555788999999999998776543 89999765
Q ss_pred CCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCc----------------EEEEEccccccceeeccchhhhhhh
Q psy14906 280 ADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDST----------------LRIFNTKSETSNKNLGIASANRNNL 343 (583)
Q Consensus 280 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~ 343 (583)
.++.......+ ..+..++|+| |++.|+.++.++. |++|++.++...
T Consensus 160 ---tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~------------- 221 (710)
T 2xdw_A 160 ---GAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE------------- 221 (710)
T ss_dssp ---TTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-------------
T ss_pred ---CCCCCcccccC-cccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-------------
Confidence 23333322112 2367899997 8999998887654 555555443211
Q ss_pred hhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC
Q psy14906 344 KRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC 423 (583)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 423 (583)
....... ..+......+.|+||
T Consensus 222 -------------------------------------------------------~~~v~~~---~~~~~~~~~~~~SpD 243 (710)
T 2xdw_A 222 -------------------------------------------------------DILCAEF---PDEPKWMGGAELSDD 243 (710)
T ss_dssp -------------------------------------------------------CEEEECC---TTCTTCEEEEEECTT
T ss_pred -------------------------------------------------------ceEEecc---CCCCeEEEEEEEcCC
Confidence 0000000 001134678899999
Q ss_pred CcEEEEEec-----CceEEEEEccc------Cc-cccccCCCCCCCcccCeeEEEEeCCCcEEEEeecC----CcEEEEE
Q psy14906 424 GNFVLIGYS-----SGHVDRFNIQS------GA-HRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGND----QTVKVWH 487 (583)
Q Consensus 424 ~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd 487 (583)
|++|+.... +..|++||+.+ +. ....+ ..+...+.. .|+|+|+.|+..+.+ +.|.+||
T Consensus 244 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l-----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 244 GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL-----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE-----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred CCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe-----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence 999988765 56899999987 43 23334 344444544 488888877766543 3699999
Q ss_pred ccCCCCCc-eEEeeccC--CeeeEEeccCCcEEEEEeCCc--eEEEEEccccceEEeecccccceeeEEecCCCcEEEEE
Q psy14906 488 FKQTGKPP-LRSIKLDN--GISFFRTHQESSMLAVCLDDF--TVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITA 562 (583)
Q Consensus 488 ~~~~~~~~-~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~ 562 (583)
+.+..... ...+.+.. .+..+.|++++.++++...++ .|++||+.+++.+..+..+...+..++++|+++.|+..
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 318 FTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp TTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred CCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence 98762112 23333333 577889998888888888887 46667776788778888888889999999999776633
Q ss_pred -e---CCCeEEEEeCCCcc
Q psy14906 563 -S---MDCTIRVWDIPSSQ 577 (583)
Q Consensus 563 -~---~d~~i~vw~~~~~~ 577 (583)
+ ..++|++||+.+++
T Consensus 398 ~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECSSCCCEEEEEETTSSS
T ss_pred EeCCCCCCEEEEEECCCCc
Confidence 2 34789999999887
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=8.8e-16 Score=158.58 Aligned_cols=285 Identities=14% Similarity=0.072 Sum_probs=184.7
Q ss_pred ccCCCEEEEEeCC-C----cEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCC-----eEE
Q psy14906 118 LPFGPHLISVDEE-S----NVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNK-----KII 187 (583)
Q Consensus 118 s~~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-----~i~ 187 (583)
+|+|++++....+ + .|.+.+..+++....+... ... .++...+..++|||||++||.+..++ .|+
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~--~l~---~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~ 154 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPN--ILS---DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK 154 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGG--GGC---TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHH--Hhc---cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE
Confidence 6899988865433 2 3344444444432222111 000 13445788999999999999876654 899
Q ss_pred EEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCc----------------EEEEeCCCCeeh----hhhhhcc
Q psy14906 188 LHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGH----------------LTVWNLEDRQVE----NQIKKAH 247 (583)
Q Consensus 188 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~----~~~~~~~ 247 (583)
+||+.+++.+.....+ ..+..++|+|||+ .|+.++.++. |++|++.+++.. ... ..|
T Consensus 155 v~d~~tg~~~~~~~~~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-~~~ 231 (710)
T 2xdw_A 155 FMKVDGAKELPDVLER-VKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-PDE 231 (710)
T ss_dssp EEETTTTEEEEEEEEE-ECSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC-TTC
T ss_pred EEECCCCCCCcccccC-cccceEEEEeCCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc-CCC
Confidence 9999999877643333 3477899999999 6666666655 999999876532 222 234
Q ss_pred ccceEEEEEecCCCEEEEEeC-----CCeEEEEEccCCC----CCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC--
Q psy14906 248 RKVVTGAHFLYNEPLLVTSSP-----DNTLKLWIFDKAD----GNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD-- 316 (583)
Q Consensus 248 ~~~v~~~~~~~~~~~l~s~~~-----d~~i~~w~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 316 (583)
...+..+.|+|||++|+..+. +..+.+|+++... +.. ....+..+...+.. .|+| +++.|+..+..
T Consensus 232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHS 308 (710)
T ss_dssp TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEECTTC
T ss_pred CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEECCCC
Confidence 556789999999999887764 5688888775310 111 23445555555554 4776 67777666543
Q ss_pred --CcEEEEEcccccc--ceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeec
Q psy14906 317 --STLRIFNTKSETS--NKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSF 392 (583)
Q Consensus 317 --g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 392 (583)
+.|.+||+.++.. .+.+.
T Consensus 309 ~~~~l~~~d~~~~~~~~~~~l~---------------------------------------------------------- 330 (710)
T 2xdw_A 309 PNYRLINIDFTDPEESKWKVLV---------------------------------------------------------- 330 (710)
T ss_dssp TTCEEEEEETTSCCGGGCEEEE----------------------------------------------------------
T ss_pred CCCEEEEEeCCCCCcccceecc----------------------------------------------------------
Confidence 3588888766431 11110
Q ss_pred CcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCce--EEEEEcccCccccccCCCCCCCcccCeeEEEEeCC
Q psy14906 393 YKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGH--VDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNL 470 (583)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 470 (583)
+. .....+..+++++++.++++...++. |++|++.+++....+ ..+.+.+..+.++|+
T Consensus 331 -----------~~----~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l-----~~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 331 -----------PE----HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF-----PLEVGSVVGYSGQKK 390 (710)
T ss_dssp -----------CC----CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE-----CCCSSEEEEEECCTT
T ss_pred -----------CC----CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec-----CCCCceEEEEecCCC
Confidence 00 00023667888888888888888874 666777677766666 456778899999999
Q ss_pred CcEEEEe-e---cCCcEEEEEccCC
Q psy14906 471 NQIVISG-G---NDQTVKVWHFKQT 491 (583)
Q Consensus 471 ~~~l~s~-~---~dg~i~iwd~~~~ 491 (583)
++.++.. + ..++++.||+.++
T Consensus 391 ~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 391 DTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp CSEEEEEEECSSCCCEEEEEETTSS
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCC
Confidence 8766533 2 4578999999887
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=2.2e-16 Score=148.48 Aligned_cols=288 Identities=9% Similarity=0.038 Sum_probs=169.2
Q ss_pred CCeEEEEEecCCCCEEEEE--------cCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCC---CeEE
Q psy14906 205 GPVTALSFRTDGPPMMVSG--------SNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPD---NTLK 273 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~--------~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~ 273 (583)
..+...++ ||++++++. ..++.|.+||+.+++... + ..+..++|+|||++|+..+.+ +...
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 45666777 777333332 125679999998876432 2 567889999999999887654 4545
Q ss_pred EEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccc
Q psy14906 274 LWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 274 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
||.++... ++....... .. +..+.|+| |++.|+.++.+. ........+
T Consensus 87 l~~~~~~~--g~~~~l~~~-~~-~~~~~wsp-dg~~l~~~~~~~-------~~~~~~~~~-------------------- 134 (347)
T 2gop_A 87 IWVADLET--LSSKKILEA-KN-IRSLEWNE-DSRKLLIVGFKR-------REDEDFIFE-------------------- 134 (347)
T ss_dssp EEEEETTT--TEEEEEEEE-SE-EEEEEECT-TSSEEEEEEECC-------CC---------------------------
T ss_pred EEEEECCC--CceEEEEcC-CC-ccceeECC-CCCEEEEEEccC-------CCcCCcEEE--------------------
Confidence 55445443 233322222 23 88999997 788888876431 000000000
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccc-cceeeecccccccCCCCceEEEEccCCcEEEEEec
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKM-DDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS 432 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 432 (583)
....... . ... ........+.+|++..... .... . . .+..++|+||| +++++..
T Consensus 135 ~~~~~~~------~------g~~--~~~~~~~~l~~~d~~~~~~~~~l~-------~--~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 135 DDVPAWF------D------DLG--FFDGEKTTFWIFDTESEEVIEEFE-------K--P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp --CCCC-----------------------CEEEEEEEETTTTEEEEEEE-------E--E-TTCEEEEETTE-EEEEEEC
T ss_pred cccceee------c------Ccc--cccCccceEEEEECCCCeEEeeec-------C--C-CcccccCCCCe-EEEEEec
Confidence 0000000 0 000 0001123566677655432 1111 0 1 47789999999 7777654
Q ss_pred Cc-------eEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecC--------CcEEEEEccCCCCCceE
Q psy14906 433 SG-------HVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGND--------QTVKVWHFKQTGKPPLR 497 (583)
Q Consensus 433 dg-------~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~ 497 (583)
++ ...+|.+.+++. ..+ ..+ ..+..+ +|||+.|+.++.+ ..|.+|| ++ +...
T Consensus 190 ~~~~~~~~~~~~l~~~d~~~~-~~l-----~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--~~~~ 256 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWEDGKE-EKM-----FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK--EVMG 256 (347)
T ss_dssp CCSSCCSSCCEEEEEEETTEE-EEE-----EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--CEEE
T ss_pred ccccccccccccEEEeCCCce-EEe-----ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--ceEe
Confidence 32 334444434443 333 234 455544 9999988877744 3677777 43 4333
Q ss_pred Eeec-cCCeee-EEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeE-EEEeCC
Q psy14906 498 SIKL-DNGISF-FRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTI-RVWDIP 574 (583)
Q Consensus 498 ~~~~-~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i-~vw~~~ 574 (583)
.... ...+.. +.|+ |+ ++++++.++.++|| +.+++... +..+...|.+++|+| .++++++.++.. .+|.++
T Consensus 257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 3333 346775 8999 88 99999999999999 88666544 344577899999999 677777777654 777765
Q ss_pred Ccc
Q psy14906 575 SSQ 577 (583)
Q Consensus 575 ~~~ 577 (583)
|+
T Consensus 331 -g~ 332 (347)
T 2gop_A 331 -GE 332 (347)
T ss_dssp -SS
T ss_pred -Cc
Confidence 54
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.76 E-value=5.3e-15 Score=135.83 Aligned_cols=282 Identities=9% Similarity=0.017 Sum_probs=194.0
Q ss_pred ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q psy14906 202 QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKAD 281 (583)
Q Consensus 202 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~ 281 (583)
.+...+.++++.++|. ++++...++.|.+||.. ++........+...+.++++.+++.++++...++.|..|+.+
T Consensus 12 ~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--- 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--- 86 (299)
T ss_dssp SSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT---
T ss_pred CcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC---
Confidence 3446899999999998 77766667899999988 543322112245678999999999988877768888888543
Q ss_pred CCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCcc
Q psy14906 282 GNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPV 361 (583)
Q Consensus 282 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (583)
+... ...+......+..+++.+ ++..+++...++.|..||. ++......
T Consensus 87 g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~---------------------------- 135 (299)
T 2z2n_A 87 GIIK-EYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYE---------------------------- 135 (299)
T ss_dssp SCEE-EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEE----------------------------
T ss_pred CcEE-EEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEec----------------------------
Confidence 1211 122223445678899986 6777777667788999987 43221100
Q ss_pred ceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEc
Q psy14906 362 SQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNI 441 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 441 (583)
.. .....+..++++++|++.++...++.|..||.
T Consensus 136 ------------------------------~~----------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 136 ------------------------------LP----------------NKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp ------------------------------CS----------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred ------------------------------CC----------------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 00 00145788999999988887777889999998
Q ss_pred ccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeec---cCCeeeEEeccCCcEEE
Q psy14906 442 QSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL---DNGISFFRTHQESSMLA 518 (583)
Q Consensus 442 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~ 518 (583)
+++..... . ..+...+.+++++++++++++...++.|.+||. ++ ... .+.. ...+..++++++|++++
T Consensus 170 -~g~~~~~~-~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g--~~~-~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 170 -SGDITEFK-I---PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG--EIT-EFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp -TCCEEEEE-C---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC--CEE-EEECSSTTCCEEEEEECSTTCEEE
T ss_pred -CCcEEEee-C---CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC--cEE-EEECCCCCCCceeEEECCCCCEEE
Confidence 66554321 1 234556889999999997777767889999998 54 332 2322 25788999999999777
Q ss_pred EEeCCceEEEEEccccceEE-eecccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCcc
Q psy14906 519 VCLDDFTVNIIDIDTCTIIR-KLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577 (583)
Q Consensus 519 ~~~~dg~i~i~d~~~~~~~~-~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~ 577 (583)
+...++.|..||. +++... .+..+...+.++++ +++++.++.. .+.+..++.++++
T Consensus 241 ~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 241 TEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred eccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 6667889999998 454322 23445567899999 8888777655 5677788877654
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.76 E-value=1e-16 Score=165.01 Aligned_cols=279 Identities=8% Similarity=-0.012 Sum_probs=178.4
Q ss_pred eCCCCCEEEEEecCC-----eEEEEEccCCceeEEEe------ccCCCeEEEEEecCCCCEEE-E----EcCCCcEEEEe
Q psy14906 170 PSPVVDIIGVGLSNK-----KIILHNILTDESLMEFI------QTWGPVTALSFRTDGPPMMV-S----GSNTGHLTVWN 233 (583)
Q Consensus 170 ~s~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~-s----~~~dg~i~vwd 233 (583)
.+|+|++++....++ .|.+.+...++....+. +|...+..++|||||+ +|+ + |+.+..|++||
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEE
Confidence 347899888776643 34444544444433332 3444689999999999 555 3 33456899999
Q ss_pred CCCCeeh-hhhhhccccceEEEEEecCCCEEEEEeCCCe-------------EEEEEccCCCCCceeeEEeccCCCCCee
Q psy14906 234 LEDRQVE-NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNT-------------LKLWIFDKADGNGRLLRIREGHSAPPNY 299 (583)
Q Consensus 234 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-------------i~~w~~~~~~~~~~~~~~~~~~~~~v~~ 299 (583)
+.+++.+ ... .. ......++|+|||+.|+.++.|.. |++|++........++.....+...+..
T Consensus 154 l~tg~~~~~~~-~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 154 VDSGEWSKVDV-IE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TTTCCBCSSCC-BS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CCCCCCcCCcc-cC-cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 9998865 211 11 111267899999999999988776 9999765432222344444455567889
Q ss_pred EEEeeCCCCEEEEeeCCC----cEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccc
Q psy14906 300 IQFYGNSSDNILSAAGDS----TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWN 375 (583)
Q Consensus 300 ~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (583)
+.|+| ||++|+..+.++ .|++|+..++.......
T Consensus 232 ~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~----------------------------------------- 269 (695)
T 2bkl_A 232 SDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK----------------------------------------- 269 (695)
T ss_dssp EEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-----------------------------------------
T ss_pred EEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-----------------------------------------
Confidence 99997 888888777655 55555543322111000
Q ss_pred cEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec----CceEEEEEcccCcc--ccc
Q psy14906 376 NIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS----SGHVDRFNIQSGAH--RGS 449 (583)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~ 449 (583)
+........+ ++|+ +++.+. ++.|.+||+.++.. ...
T Consensus 270 -----------------------------------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 312 (695)
T 2bkl_A 270 -----------------------------------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKE 312 (695)
T ss_dssp -----------------------------------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred -----------------------------------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence 0012333444 6666 544443 58899999987753 122
Q ss_pred cCCCCCCCc-ccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeec--cCCeeeEEeccCCcEEEEEeC----
Q psy14906 450 YGHDNQPGH-VGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL--DNGISFFRTHQESSMLAVCLD---- 522 (583)
Q Consensus 450 ~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~---- 522 (583)
+. ..+ ...+..++++ ++.++++...|+..++|.+.... .....+.. ...+..+.++|+++.++....
T Consensus 313 l~----~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 386 (695)
T 2bkl_A 313 IV----PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG-KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT 386 (695)
T ss_dssp EE----CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE
T ss_pred Ee----cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 21 222 4568888998 77888999999998888776321 44444443 346778889999987764433
Q ss_pred CceEEEEEccccce
Q psy14906 523 DFTVNIIDIDTCTI 536 (583)
Q Consensus 523 dg~i~i~d~~~~~~ 536 (583)
.++|++||+.+++.
T Consensus 387 P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 387 PRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCcE
Confidence 47899999988764
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.74 E-value=1.1e-14 Score=136.51 Aligned_cols=279 Identities=9% Similarity=-0.018 Sum_probs=182.5
Q ss_pred EecCCCCEEEEEcC--CC---cEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEe----------CCCeEEEEE
Q psy14906 212 FRTDGPPMMVSGSN--TG---HLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS----------PDNTLKLWI 276 (583)
Q Consensus 212 ~~~~~~~~l~s~~~--dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~d~~i~~w~ 276 (583)
..|+++ .+++... .. .|.+||..+++.+..+..+ ..+ .++++|||++++.+. .++.|.+||
T Consensus 28 ~~~~~~-~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 28 PGADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCC-EEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 346776 5555543 22 7899999999988877333 223 899999999998886 367899996
Q ss_pred ccCCCCCceeeEEeccC-------CCCCeeEEEeeCCCCEEEEeeC--CCcEEEEEcccccccee-eccchhhhhhhhhh
Q psy14906 277 FDKADGNGRLLRIREGH-------SAPPNYIQFYGNSSDNILSAAG--DSTLRIFNTKSETSNKN-LGIASANRNNLKRK 346 (583)
Q Consensus 277 ~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 346 (583)
.. ..+.+..+.-. ......+.++| |+++|+.+.. ++.|.++| .+++.... +..
T Consensus 104 ~~----t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~----------- 166 (373)
T 2mad_H 104 PV----TFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS----------- 166 (373)
T ss_pred CC----CCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----------
Confidence 64 33333333211 12356889997 8999998874 47899999 88765443 210
Q ss_pred cchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCC-c
Q psy14906 347 NRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCG-N 425 (583)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~ 425 (583)
..++.+.|++ +
T Consensus 167 --------------------------------------------------------------------~~~~~~~~~~~~ 178 (373)
T 2mad_H 167 --------------------------------------------------------------------PTCYHIHPGAPS 178 (373)
T ss_pred --------------------------------------------------------------------CceEEEEeCCCc
Confidence 1123344444 3
Q ss_pred EEEEEecCceEEEEEcccCccccccCC-CCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeec---
Q psy14906 426 FVLIGYSSGHVDRFNIQSGAHRGSYGH-DNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL--- 501 (583)
Q Consensus 426 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 501 (583)
.+++.+.||.+.++|. +++....... ....+.........+.+++..++..+..+.+.+.|+.......+..+..
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~ 257 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG 257 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence 4455566788888888 6665522210 0000111112335566766555444567899999987652222232221
Q ss_pred --------cCCeeeEEeccCCcEEEEEeC----------CceEEEEEccccceEEeecccccceeeEEecCCCc-EEEEE
Q psy14906 502 --------DNGISFFRTHQESSMLAVCLD----------DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSR-WLITA 562 (583)
Q Consensus 502 --------~~~v~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~ 562 (583)
......++++|+++.++++.. .+.|.++|+.+++.+.++.. ......++|+|||+ +++++
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEE
Confidence 123444789999998877653 35899999999999988863 34689999999999 77777
Q ss_pred e-CCCeEEEEeCCCcccccc
Q psy14906 563 S-MDCTIRVWDIPSSQLIDC 581 (583)
Q Consensus 563 ~-~d~~i~vw~~~~~~~~~~ 581 (583)
. .++.|.+||+.+++.+++
T Consensus 337 ~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 337 SAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCCEEee
Confidence 6 589999999999998876
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.74 E-value=3.1e-16 Score=161.47 Aligned_cols=283 Identities=7% Similarity=-0.029 Sum_probs=178.2
Q ss_pred EccCCCEEEEEeCCC---cEEEE--EcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe-----cCCeE
Q psy14906 117 ILPFGPHLISVDEES---NVKVW--DIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL-----SNKKI 186 (583)
Q Consensus 117 is~~~~~l~s~~~dg---~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~d~~i 186 (583)
.+|+|++++....++ .-.+| +...++....+..... ..+|...+..++|||||++||.+. .+..|
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~-----a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i 149 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGW-----SKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVL 149 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGS-----SSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHh-----ccCCCEEEEEEEECCCCCEEEEEECCCCCceEEE
Confidence 379999988766543 33444 4444443322221100 014556799999999999999543 34689
Q ss_pred EEEEccCCcee-EEEeccCCCeEEEEEecCCCCEEEEEcCCCc-------------EEEEeCCCCe----ehhhhhhccc
Q psy14906 187 ILHNILTDESL-MEFIQTWGPVTALSFRTDGPPMMVSGSNTGH-------------LTVWNLEDRQ----VENQIKKAHR 248 (583)
Q Consensus 187 ~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~----~~~~~~~~~~ 248 (583)
++||+.+++.+ .. .........++|+|||+ .|+.++.+.. |++|++.+++ ++... ..|.
T Consensus 150 ~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~ 226 (695)
T 2bkl_A 150 HVIDVDSGEWSKVD-VIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDP 226 (695)
T ss_dssp EEEETTTCCBCSSC-CBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCT
T ss_pred EEEECCCCCCcCCc-ccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCC
Confidence 99999998865 21 11111226899999999 7777776665 9999998775 23222 3455
Q ss_pred cceEEEEEecCCCEEEEEeCCC--eEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee---CCCcEEEEE
Q psy14906 249 KVVTGAHFLYNEPLLVTSSPDN--TLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA---GDSTLRIFN 323 (583)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~~d~--~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd 323 (583)
..+..+.|+|||++|+..+.++ ...+|-++...+. ...+..+...+....+ + ++++++... .++.|.+||
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEB
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEe
Confidence 6788999999999988877655 4445544543222 3334445556666666 4 455444433 257888888
Q ss_pred ccccccc--eeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccccccee
Q psy14906 324 TKSETSN--KNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMF 401 (583)
Q Consensus 324 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 401 (583)
+.++... +.+..
T Consensus 302 ~~~~~~~~~~~l~~------------------------------------------------------------------ 315 (695)
T 2bkl_A 302 PAKPARASWKEIVP------------------------------------------------------------------ 315 (695)
T ss_dssp TTBCSGGGCEEEEC------------------------------------------------------------------
T ss_pred CCCCCccCCeEEec------------------------------------------------------------------
Confidence 8665320 11000
Q ss_pred eecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcc-cCccccccCCCCCCCc-ccCeeEEEEeCCCcEEE----
Q psy14906 402 LVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQ-SGAHRGSYGHDNQPGH-VGGVRGVVSDNLNQIVI---- 475 (583)
Q Consensus 402 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~---- 475 (583)
......+..++++ ++.++++...++..++|.+. +++....+ ..+ .+.+..++++|+++.++
T Consensus 316 -------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l-----~~~~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 316 -------EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTV-----QLPGVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp -------CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEEC-----CCSSSSEECCCBSCTTCSEEEEEEE
T ss_pred -------CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEe-----cCCCCeEEEEeecCCCCCEEEEEEc
Confidence 0001235667777 67788888889888887665 35444444 233 66788889999997766
Q ss_pred EeecCCcEEEEEccCC
Q psy14906 476 SGGNDQTVKVWHFKQT 491 (583)
Q Consensus 476 s~~~dg~i~iwd~~~~ 491 (583)
+....++|++||+.++
T Consensus 383 s~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 383 SFTTPRQIYKTSVSTG 398 (695)
T ss_dssp ETTEEEEEEEEETTTC
T ss_pred CCCCCCEEEEEECCCC
Confidence 3334578999999887
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=2.1e-15 Score=138.08 Aligned_cols=241 Identities=12% Similarity=0.070 Sum_probs=170.9
Q ss_pred ccccceEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEc
Q psy14906 246 AHRKVVTGAHFLYNEP-LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324 (583)
Q Consensus 246 ~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 324 (583)
.+.....+++|+|+++ +++++..++.|..|+.+ . . ...+..+...+.+++++| +++++++...++.|.+||.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~--~---~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD--G---Q-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT--S---C-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECS
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC--C---C-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcC
Confidence 3445678899999998 77788888999999653 2 2 445556667789999997 7887777767789999998
Q ss_pred cccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeec
Q psy14906 325 KSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVP 404 (583)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 404 (583)
.+++........
T Consensus 98 ~~g~~~~~~~~~-------------------------------------------------------------------- 109 (296)
T 3e5z_A 98 PGGEWESIADSF-------------------------------------------------------------------- 109 (296)
T ss_dssp TTCCEEEEECEE--------------------------------------------------------------------
T ss_pred CCCcEEEEeecc--------------------------------------------------------------------
Confidence 766532211000
Q ss_pred ccccccCCCCceEEEEccCCcEEEE----Ee-------------cCceEEEEEcccCccccccCCCCCCCcccCeeEEEE
Q psy14906 405 ERCKQAKQSKPTCVYITHCGNFVLI----GY-------------SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVS 467 (583)
Q Consensus 405 ~~~~~~~~~~i~~~~~s~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~ 467 (583)
.......+..++++|+|+++++ |+ ..+.|..++.. ++.. .+ ..+......++|
T Consensus 110 ---~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~-----~~~~~~~~gi~~ 179 (296)
T 3e5z_A 110 ---EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-AP-----IRDRVKPNGLAF 179 (296)
T ss_dssp ---TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EE-----ECCCSSEEEEEE
T ss_pred ---CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Ee-----ecCCCCCccEEE
Confidence 0000135678999999998887 33 13456666655 4432 22 245566789999
Q ss_pred eCCCcEEEEeecCCcEEEEEcc-CCCCCc---eEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecc
Q psy14906 468 DNLNQIVISGGNDQTVKVWHFK-QTGKPP---LRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSG 542 (583)
Q Consensus 468 s~~~~~l~s~~~dg~i~iwd~~-~~~~~~---~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 542 (583)
+|+++.+++.+.++.|.+|++. .+ .. ...+. ....+..++++++|+++++. ++.|.+||.+ ++.+..+..
T Consensus 180 s~dg~~lv~~~~~~~i~~~~~~~~g--~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNATHRYCLNARG--ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp CTTSCEEEEETTTTEEEEEEECSSS--CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred CCCCCEEEEeCCCCeEEEEEECCCC--cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 9999988777788999999997 33 33 22221 23457789999999876666 7899999987 778888887
Q ss_pred cccceeeEEe-cCCCcEEEEEeCCCeEEEEeCCCccc
Q psy14906 543 HMGQLTDADF-SPDSRWLITASMDCTIRVWDIPSSQL 578 (583)
Q Consensus 543 h~~~v~~l~~-s~d~~~l~s~~~d~~i~vw~~~~~~~ 578 (583)
+.. +++++| +|+++.|+.++.++ +.-++..++++
T Consensus 255 ~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 255 PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 777 999999 68999898888764 55556666554
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=3.5e-14 Score=130.36 Aligned_cols=281 Identities=8% Similarity=-0.007 Sum_probs=191.9
Q ss_pred cCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEE-eccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEF-IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ 238 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 238 (583)
.+...+.+++++++|+++++...++.|.+||.. ++..... ..+...+.++++.+++. ++++...++.|..||.. ++
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-Cc
Confidence 445688999999999988876667899999987 5443222 23446799999999998 77777778889999986 33
Q ss_pred eh-hhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCC
Q psy14906 239 VE-NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDS 317 (583)
Q Consensus 239 ~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 317 (583)
.. ..+ ......+.++++.++++++++...++.|..|+. .+... ..........+..+++.+ ++...++...++
T Consensus 89 ~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~---~g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~ 162 (299)
T 2z2n_A 89 IKEYTL-PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD---DGKIR-EYELPNKGSYPSFITLGS-DNALWFTENQNN 162 (299)
T ss_dssp EEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT---TCCEE-EEECSSTTCCEEEEEECT-TSCEEEEETTTT
T ss_pred EEEEeC-CCcCCCceeeEECCCCCEEEEecCCceEEEECC---CCCEE-EecCCCCCCCCceEEEcC-CCCEEEEeCCCC
Confidence 21 112 124457889999999988887777888888854 21222 122233445678899986 677776666678
Q ss_pred cEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccc
Q psy14906 318 TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKM 397 (583)
Q Consensus 318 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 397 (583)
.|..||. +++.... ...
T Consensus 163 ~i~~~~~-~g~~~~~----------------------------------------------------------~~~---- 179 (299)
T 2z2n_A 163 AIGRITE-SGDITEF----------------------------------------------------------KIP---- 179 (299)
T ss_dssp EEEEECT-TCCEEEE----------------------------------------------------------ECS----
T ss_pred EEEEEcC-CCcEEEe----------------------------------------------------------eCC----
Confidence 8999987 4432110 000
Q ss_pred cceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEe
Q psy14906 398 DDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISG 477 (583)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 477 (583)
.....+..++++++|++.++...++.|.+||. +++... +.. ..+...+.+++++++|+++++.
T Consensus 180 ------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 180 ------------TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI---PTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ------------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECSTTCEEEEE
T ss_pred ------------CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC---CCCCCCceeEEECCCCCEEEec
Confidence 00135778999999997777767889999998 665433 211 3455678999999999977776
Q ss_pred ecCCcEEEEEccCCCCCceEEee---ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccc
Q psy14906 478 GNDQTVKVWHFKQTGKPPLRSIK---LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCT 535 (583)
Q Consensus 478 ~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 535 (583)
..++.|..||.. + . +..+. ....+.++++ ++|+++++.. .+.+..++.++++
T Consensus 243 ~~~~~i~~~d~~-g--~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 243 WGANKIGRLTSN-N--I-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp TTTTEEEEEETT-T--E-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred cCCceEEEECCC-C--c-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 677899999983 3 2 33332 2256888999 8888766654 5677778776543
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.73 E-value=2.7e-14 Score=133.83 Aligned_cols=288 Identities=10% Similarity=-0.027 Sum_probs=191.1
Q ss_pred eeCCCCCEEEEEec--CC---eEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEc----------CCCcEEEEe
Q psy14906 169 EPSPVVDIIGVGLS--NK---KIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGS----------NTGHLTVWN 233 (583)
Q Consensus 169 ~~s~~~~~l~~~~~--d~---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~vwd 233 (583)
...|+++++.+... .. .|.++|..+++.+.++.....+ .++++|||+ .++.+. .++.|.+||
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEE
Confidence 44578887777653 22 8899999999998888765444 999999999 555554 367899999
Q ss_pred CCCCeehhhhhhc------cccceEEEEEecCCCEEEEEeC--CCeEEEEEccCCCCCceeeEE-eccCCCCCeeEEEee
Q psy14906 234 LEDRQVENQIKKA------HRKVVTGAHFLYNEPLLVTSSP--DNTLKLWIFDKADGNGRLLRI-REGHSAPPNYIQFYG 304 (583)
Q Consensus 234 ~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~~~--d~~i~~w~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 304 (583)
..+.+.+..+..+ +......++|+|||++|+.+.. ++.|.++| + ..+.+.. +... .++.+.|
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~----t~~~~~~~i~~~----~~~~~~~ 174 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q----GGSSDDQLLSSP----TCYHIHP 174 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C----CCCEEeEEcCCC----ceEEEEe
Confidence 9988777665221 0123457899999999998874 47899986 4 3455555 4321 2345556
Q ss_pred CCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCC
Q psy14906 305 NSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGK 384 (583)
Q Consensus 305 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (583)
.....+++.+.||.+.++|. +++.........
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~----------------------------------------------- 206 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA----------------------------------------------- 206 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc-----------------------------------------------
Confidence 45566777888999999998 665432110000
Q ss_pred ceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcc--ccccCCCC-----CCC
Q psy14906 385 NKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAH--RGSYGHDN-----QPG 457 (583)
Q Consensus 385 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-----~~~ 457 (583)
.+ .. ...-.....+.+++..++..+..+.+.+.|+.++.. ...+.... ...
T Consensus 207 ----~~-~~-----------------~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~ 264 (373)
T 2mad_H 207 ----ML-TA-----------------AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred ----cc-cC-----------------CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence 00 00 000012234556655544445678888888865432 11111000 000
Q ss_pred cccCeeEEEEeCCCcEEEEeec----------CCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCc-EEEEEe-CCce
Q psy14906 458 HVGGVRGVVSDNLNQIVISGGN----------DQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESS-MLAVCL-DDFT 525 (583)
Q Consensus 458 h~~~v~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~ 525 (583)
.......++++|+++.++.+.. ++.|.++|..+. +.+..+........++|+|||+ +++++. .++.
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCe
Confidence 1223445789999987776543 357999999988 8888888888899999999999 777776 4899
Q ss_pred EEEEEccccceEEee
Q psy14906 526 VNIIDIDTCTIIRKL 540 (583)
Q Consensus 526 i~i~d~~~~~~~~~~ 540 (583)
|.++|+.+++.+..+
T Consensus 343 V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 343 LHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCCEEeee
Confidence 999999999998774
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=3e-15 Score=137.05 Aligned_cols=249 Identities=13% Similarity=0.079 Sum_probs=168.3
Q ss_pred CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEE
Q psy14906 194 DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLK 273 (583)
Q Consensus 194 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 273 (583)
+..+..+..+.....+++|+|+++.+++++..++.|..||..++ ...+ ..+...+.+++++++|+++++...++.|.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 34445555555778899999999767888888999999999877 4444 45667899999999999888777778899
Q ss_pred EEEccCCCCCceeeEE-ecc-CCCCCeeEEEeeCCCCEEEEeeC-----------------CCcEEEEEccccccceeec
Q psy14906 274 LWIFDKADGNGRLLRI-REG-HSAPPNYIQFYGNSSDNILSAAG-----------------DSTLRIFNTKSETSNKNLG 334 (583)
Q Consensus 274 ~w~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~ 334 (583)
+|+. .++....+.. ..+ ....+..++++| +|+++++.+. .+.|..++.. ++.
T Consensus 94 ~~d~--~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~----- 164 (296)
T 3e5z_A 94 RQRE--PGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL----- 164 (296)
T ss_dssp EECS--TTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----
T ss_pred EEcC--CCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-----
Confidence 9954 3222222211 111 123567889987 7877776321 1223333222 110
Q ss_pred cchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCC
Q psy14906 335 IASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSK 414 (583)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (583)
... ......
T Consensus 165 -----------------------------------------------------~~~------------------~~~~~~ 173 (296)
T 3e5z_A 165 -----------------------------------------------------SAP------------------IRDRVK 173 (296)
T ss_dssp -----------------------------------------------------EEE------------------ECCCSS
T ss_pred -----------------------------------------------------EEe------------------ecCCCC
Confidence 000 000134
Q ss_pred ceEEEEccCCcEEEEEecCceEEEEEcc-cCcc---ccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccC
Q psy14906 415 PTCVYITHCGNFVLIGYSSGHVDRFNIQ-SGAH---RGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 415 i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 490 (583)
+..++|+|+++.+++.+.++.|++|++. ++.. ...+ ..+...+.+++++++|+++++. ++.|.+|+..
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-----~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-----TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-----CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-----eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 6789999999998777778999999987 4443 2222 1345567789999999977666 7889999987
Q ss_pred CCCCceEEeeccCCeeeEEe-ccCCcEEEEEeCCceEEEEEccccce
Q psy14906 491 TGKPPLRSIKLDNGISFFRT-HQESSMLAVCLDDFTVNIIDIDTCTI 536 (583)
Q Consensus 491 ~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~ 536 (583)
+ +.+..+..+..+.+++| +|+++.|++++.+ .+.-++.++.++
T Consensus 246 g--~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 246 G--DELGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp S--CEEEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred C--CEEEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4 66666666555899999 5899999998876 455556655543
No 197
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.72 E-value=8.4e-15 Score=137.47 Aligned_cols=288 Identities=10% Similarity=0.024 Sum_probs=196.7
Q ss_pred CCCCCEEEEEecC-----CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEc---------CCCcEEEEeCCC
Q psy14906 171 SPVVDIIGVGLSN-----KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGS---------NTGHLTVWNLED 236 (583)
Q Consensus 171 s~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~dg~i~vwd~~~ 236 (583)
.++++.+.+.... +.|.++|..+++.+.++.....+ .++++||+++++++.. .++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 3577777666553 69999999999999999866455 8999999995444432 467899999999
Q ss_pred Ceehhhhhhc------cccceEEEEEecCCCEEEEEeC--CCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCC
Q psy14906 237 RQVENQIKKA------HRKVVTGAHFLYNEPLLVTSSP--DNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSD 308 (583)
Q Consensus 237 ~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 308 (583)
++.+..+..+ .......+.|+|||++++.+.. ++.|.+.|+. ..+.+..+.-.. +....|....
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~----t~kvv~~I~v~g----~~~~~p~g~~ 230 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE----GKTFDRMLDVPD----CYHIFPASPT 230 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT----TTEEEEEEECCS----EEEEEEEETT
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC----CCeEEEEEEcCC----ceeeccCCCc
Confidence 9888776322 1123457899999999998874 5789999664 455565554311 1334443446
Q ss_pred EEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEE
Q psy14906 309 NILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVS 388 (583)
Q Consensus 309 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 388 (583)
.+++.+.||.+.+.+..+++...... .
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~-----------------------------------------------------~ 257 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNT-----------------------------------------------------E 257 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEEC-----------------------------------------------------C
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEee-----------------------------------------------------e
Confidence 77778889998888885443221100 0
Q ss_pred EeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccc--cccCCC--CC---CCcccC
Q psy14906 389 LWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHR--GSYGHD--NQ---PGHVGG 461 (583)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~--~~---~~h~~~ 461 (583)
.++.... .....+.+.++++.++.....+.+.+.|...+... ..+... .. ......
T Consensus 258 ~~~v~~~-----------------p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g 320 (426)
T 3c75_H 258 VFHTEDE-----------------LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG 320 (426)
T ss_dssp CCSCTTS-----------------CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred eeccCCC-----------------ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence 0111100 01123467888888777778899999998654421 111000 00 001122
Q ss_pred eeEEEEeCCCcEEEEeec----------CCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCc-EEEEEe-CCceEEEE
Q psy14906 462 VRGVVSDNLNQIVISGGN----------DQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESS-MLAVCL-DDFTVNII 529 (583)
Q Consensus 462 v~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~i~ 529 (583)
...++++|+++.++.... ++.|.+.|..+. +.+..+........++|+|||+ ++++.. .++.|.++
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--ERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC--eEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 234789999887666532 357999999999 8999998888899999999999 888887 58999999
Q ss_pred EccccceEEee
Q psy14906 530 DIDTCTIIRKL 540 (583)
Q Consensus 530 d~~~~~~~~~~ 540 (583)
|+.+++.+.++
T Consensus 399 D~~t~kvv~tI 409 (426)
T 3c75_H 399 DAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99999999886
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.71 E-value=4.6e-15 Score=133.05 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=167.1
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCC-CCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccch
Q psy14906 259 NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHS-APPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIAS 337 (583)
Q Consensus 259 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 337 (583)
.+++|++++.++.|.+||.. +++.+..+..+. ..+.++.++| +++.++ +.++.|..||. +++.+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~----tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~---- 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD----TKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNI---- 71 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT----TTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEE----
T ss_pred CCcEEEeeCCCCEEEEEECC----CCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEE----
Confidence 46789999999999999543 567777777665 4688999997 788888 45678999998 66543322
Q ss_pred hhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceE
Q psy14906 338 ANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTC 417 (583)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 417 (583)
... ....+.+
T Consensus 72 -------------------------------------------------------~~~---------------~~~~~~~ 81 (276)
T 3no2_A 72 -------------------------------------------------------AAP---------------AGCEMQT 81 (276)
T ss_dssp -------------------------------------------------------ECC---------------TTCEEEE
T ss_pred -------------------------------------------------------cCC---------------CCccccc
Confidence 110 0024667
Q ss_pred EEEccCCcEEEEEec-CceEEEEEcccCccccccCCCC-CCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCc
Q psy14906 418 VYITHCGNFVLIGYS-SGHVDRFNIQSGAHRGSYGHDN-QPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPP 495 (583)
Q Consensus 418 ~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 495 (583)
+.+.++|+++++.+. ++.+..+|. +++.+..+.... ...+......+++.++|+++++...++.|..||.+ + +.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G--~~ 157 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G--QL 157 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S--CE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C--CE
Confidence 889999999999887 888888886 677665553210 01233456677889999999999999999999998 7 88
Q ss_pred eEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccc------cceeeEEecCCCcEEEEEe
Q psy14906 496 LRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHM------GQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 496 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~------~~v~~l~~s~d~~~l~s~~ 563 (583)
+..+.....+..+...++|++++++..++.|..+|.++|+.+.++..+. ..+..++..++|..+++..
T Consensus 158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 8888877778888899999999999989999999999999998886432 2277888889999888773
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=6.1e-15 Score=133.14 Aligned_cols=242 Identities=7% Similarity=-0.029 Sum_probs=169.0
Q ss_pred ceEEEEEecCCCEEE-EEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccc
Q psy14906 250 VVTGAHFLYNEPLLV-TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSET 328 (583)
Q Consensus 250 ~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 328 (583)
...++++++++++++ +...++.|..|+.+ . .........+...+.++++.+ +++.+++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~--~--~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG--S--TGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCC--C--cccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCce
Confidence 678899999999777 54678889999532 1 111111122335678899986 677555555 8899999976542
Q ss_pred cceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccccc
Q psy14906 329 SNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCK 408 (583)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 408 (583)
... +..
T Consensus 99 ~~~-~~~------------------------------------------------------------------------- 104 (270)
T 1rwi_B 99 QTV-LPF------------------------------------------------------------------------- 104 (270)
T ss_dssp CEE-CCC-------------------------------------------------------------------------
T ss_pred Eee-eec-------------------------------------------------------------------------
Confidence 210 000
Q ss_pred ccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEc
Q psy14906 409 QAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHF 488 (583)
Q Consensus 409 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 488 (583)
.....+..++++++|+++++...++.|.+|+..+....... ......+.+++++++++++++...++.|.+||.
T Consensus 105 -~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 105 -DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp -CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-----CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred -CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-----cccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence 00035778999999997777777889999976554433221 233456789999999998777777889999998
Q ss_pred cCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCe
Q psy14906 489 KQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCT 567 (583)
Q Consensus 489 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~ 567 (583)
... ....... ....+..++++++|.++++...++.|.+||............+...+.+++++++|+++++...++.
T Consensus 179 ~~~--~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 179 ESN--NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 256 (270)
T ss_dssp TTC--CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE
T ss_pred CCC--ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE
Confidence 765 3332222 2256889999999977777777889999998765544333334467899999999998888889999
Q ss_pred EEEEeCCCcccc
Q psy14906 568 IRVWDIPSSQLI 579 (583)
Q Consensus 568 i~vw~~~~~~~~ 579 (583)
|+++++...+.+
T Consensus 257 v~~~~~~~~~~~ 268 (270)
T 1rwi_B 257 VVKLTSLEHHHH 268 (270)
T ss_dssp EEEECCCGGGSC
T ss_pred EEEEcCCCcccc
Confidence 999999877654
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=8.9e-15 Score=131.15 Aligned_cols=213 Identities=12% Similarity=0.060 Sum_probs=165.6
Q ss_pred ceEEEEeeCCeEEEEecCCcEEEeecCCCC-CCeEEEEe--eCeEEEEEcCCeEEEEeccceeeeeecccC-ccEEEE--
Q psy14906 44 ETLFVTCVGKAFHVYGCNHFKLLSVSPQHE-DDITCLSS--DFFHIYTSANNIIYAWRRGIDIVGTYKGHT-SPVHLI-- 117 (583)
Q Consensus 44 ~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~-~~v~~~~~--~~~~~~~~~~~~i~vw~~~~~~~~~~~~h~-~~v~~i-- 117 (583)
..+++.+.++.|.+||.++++.+..+..+. ..+.++++ +|++++ +.++.|..||.+++.+..+..+. ..+.++
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEEEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCccccccEE
Confidence 455556689999999999999999888765 45666665 778777 67889999999888888888653 456554
Q ss_pred ccCCCEEEEEeC-CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCce
Q psy14906 118 LPFGPHLISVDE-ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDES 196 (583)
Q Consensus 118 s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 196 (583)
.++|+++++.+. ++.|..+|. +|+.+.++.+..... .+......+++.++|++|++...++.|..||.+ |+.
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~-----~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE-----RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS-----SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC-----cccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999999887 778888885 688887776432100 112234556789999999999999999999998 999
Q ss_pred eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccc------cceEEEEEecCCCEEEEEe
Q psy14906 197 LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR------KVVTGAHFLYNEPLLVTSS 267 (583)
Q Consensus 197 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~ 267 (583)
+.++..+ ..+.++.+.++|+ +++++..++.|..+|..+++.+.++ ..+. ..+..+...++|+.+++..
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRV-NANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEE-EGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEe-cCCCCCCccccccccceEcCCCCEEEEec
Confidence 9999876 5667788899998 8888888889999999999988777 2221 2377888889998888764
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.69 E-value=2.6e-14 Score=134.10 Aligned_cols=301 Identities=9% Similarity=-0.035 Sum_probs=196.8
Q ss_pred ccCCCEEEEEeCC-----CcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe----------c
Q psy14906 118 LPFGPHLISVDEE-----SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL----------S 182 (583)
Q Consensus 118 s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----------~ 182 (583)
.++++++++.... +.|.+.|..+++.+.++.. ...+ .++++||+++|.++. .
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-----------G~~P--gia~SpDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-----------GFLP--HPVAAEDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-----------CSSC--EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-----------CCCC--ceEECCCCCEEEEEeccccccccCCC
Confidence 5677777776553 6999999999999999973 3344 799999999888876 3
Q ss_pred CCeEEEEEccCCceeEEEecc-------CCCeEEEEEecCCCCEEEEEcC--CCcEEEEeCCCCeehhhhhhccccceEE
Q psy14906 183 NKKIILHNILTDESLMEFIQT-------WGPVTALSFRTDGPPMMVSGSN--TGHLTVWNLEDRQVENQIKKAHRKVVTG 253 (583)
Q Consensus 183 d~~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 253 (583)
++.|.++|..+++.+.++.-. ......+.|+|||+ +++++.. ++.|.+.|+.+++.+..+..+. .
T Consensus 148 ~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--- 221 (426)
T 3c75_H 148 TDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--- 221 (426)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E---
T ss_pred CCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c---
Confidence 678999999999998887632 13456889999999 5665543 6789999999999888773221 1
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEEccCCCCCceeeEE----eccCCCCC-eeEEEeeCCCCEEEEeeCCCcEEEEEcccc
Q psy14906 254 AHFLYNE-PLLVTSSPDNTLKLWIFDKADGNGRLLRI----REGHSAPP-NYIQFYGNSSDNILSAAGDSTLRIFNTKSE 327 (583)
Q Consensus 254 ~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 327 (583)
....|++ ..+++.+.||.+.+.+.. ..+.... +.....++ ..+.+.+ ++..++.....+.+.+.|....
T Consensus 222 ~~~~p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 222 YHIFPASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSS
T ss_pred eeeccCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCC
Confidence 2233333 455666677777666541 1222211 11111121 2345676 6777776677889999998654
Q ss_pred ccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccc
Q psy14906 328 TSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERC 407 (583)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 407 (583)
.....- -|.+...........
T Consensus 297 ~~~v~~-------------------------------------------------------~~~~~~~~~i~~g~~---- 317 (426)
T 3c75_H 297 GATFRA-------------------------------------------------------PIEALTEAERADDWR---- 317 (426)
T ss_dssp CEEECC-------------------------------------------------------CEESSCTTTGGGTEE----
T ss_pred ceEEee-------------------------------------------------------eeeeccccccccccc----
Confidence 321000 000000000000000
Q ss_pred cccCCCCceEEEEccCCcEEEEEec----------CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCc-EEEE
Q psy14906 408 KQAKQSKPTCVYITHCGNFVLIGYS----------SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQ-IVIS 476 (583)
Q Consensus 408 ~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s 476 (583)
......++++|+++.+++... ++.|.++|..+.+.+..+. -......++|+||++ ++++
T Consensus 318 ----p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~------vg~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 318 ----PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE------LGHEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp ----ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEEECCSSSCEEEE
T ss_pred ----cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE------CCCCcCeEEEccCCCEEEEE
Confidence 022334689999988887653 4679999999999998873 223588999999999 8887
Q ss_pred ee-cCCcEEEEEccCCCCCceEEeeccCCeeeEEeccC
Q psy14906 477 GG-NDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQE 513 (583)
Q Consensus 477 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 513 (583)
.. .++.|.++|..+. +.+..+..-+.-..+..+||
T Consensus 388 ~n~~s~~VsVID~~t~--kvv~tI~~vG~~P~~i~~~~ 423 (426)
T 3c75_H 388 LSAGTQTLHIYDAATG--EELRSVDQLGRGPQIITTHD 423 (426)
T ss_dssp EETTTTEEEEEETTTC--CEEEEECCCSSSCCEEECCC
T ss_pred EcCCCCeEEEEECCCC--CEEEEecCCCCCCcEEEcCC
Confidence 77 5899999999998 88877632222222445543
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=1.4e-14 Score=130.70 Aligned_cols=233 Identities=6% Similarity=-0.099 Sum_probs=163.1
Q ss_pred cccEEEEEeCCCceEE-EEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eCeEEEEEcCCeEEEEeccceeeeeec
Q psy14906 32 LPVVARFIRRRKETLF-VTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DFFHIYTSANNIIYAWRRGIDIVGTYK 108 (583)
Q Consensus 32 ~~~~~~~~p~~~~~~i-~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~i~vw~~~~~~~~~~~ 108 (583)
.|..+.+.|+++ .++ +...++.|.+||..+.........+...+.++++ ++++.++..++.|.+||.++.....+.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeee
Confidence 778888977764 444 3357789999998766554433334456677777 457666666889999998765554443
Q ss_pred c-cCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCe
Q psy14906 109 G-HTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKK 185 (583)
Q Consensus 109 ~-h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 185 (583)
. .......+ .++|+.+++...++.|.+|+..+........ .....+..++++++|+++++...++.
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~p~~i~~~~~g~l~v~~~~~~~ 172 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-----------TGLNDPDGVAVDNSGNVYVTDTDNNR 172 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-----------CSCCSCCCEEECTTCCEEEEEGGGTE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-----------ccCCCceeEEEeCCCCEEEEECCCCE
Confidence 2 22456665 7889877776678899999866554332221 23346788999999997777777889
Q ss_pred EEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEE
Q psy14906 186 IILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVT 265 (583)
Q Consensus 186 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 265 (583)
|.+||............+...+..+++.++|. ++++...++.|.+||.......... ..+...+.+++++++|+++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLP-FTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCCEECC-CCSCSCEEEEEECTTCCEEEE
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcceeec-cCCCCCceeEEECCCCCEEEE
Confidence 99999876654433333336789999999996 7888877889999998765433222 233467899999999998888
Q ss_pred EeCCCeEEEEEcc
Q psy14906 266 SSPDNTLKLWIFD 278 (583)
Q Consensus 266 ~~~d~~i~~w~~~ 278 (583)
...++.|++++++
T Consensus 251 ~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 251 DRGNDRVVKLTSL 263 (270)
T ss_dssp EGGGTEEEEECCC
T ss_pred ECCCCEEEEEcCC
Confidence 8889999999654
No 203
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=3.9e-11 Score=125.52 Aligned_cols=485 Identities=10% Similarity=0.065 Sum_probs=279.0
Q ss_pred EEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCC-----CCCCeEEEEee--CeEEEEEcCCeEEEEeccceeeeeecc
Q psy14906 37 RFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQ-----HEDDITCLSSD--FFHIYTSANNIIYAWRRGIDIVGTYKG 109 (583)
Q Consensus 37 ~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~ 109 (583)
+...|.++.+-+++.+ -+..||-.+.+....... ....|.++..| |++-+++. +.+..||........+..
T Consensus 47 ~I~qD~~G~lWigT~~-GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~~~~ 124 (795)
T 4a2l_A 47 SIDQDKRGNMWFATYD-GVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTR-DGLSRYDEEKDIFQNFFY 124 (795)
T ss_dssp EEEECTTSCEEEEETT-EEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECC
T ss_pred EEEEcCCCCEEEeecC-cCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCCEEEEeC-CchheeCCCCCeEEeccc
Confidence 3444777766665554 467788665444332111 24568899874 46666665 457899975443444432
Q ss_pred cCc----cEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcc-eEEEeeCCCCCEEEEEec
Q psy14906 110 HTS----PVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSC-VNVLEPSPVVDIIGVGLS 182 (583)
Q Consensus 110 h~~----~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~ 182 (583)
... .|.++ .++|...+ ++. +.|..||.++++.. .+... ..... |.++...+++++.+ ++.
T Consensus 125 ~~~~~~~~i~~i~~d~~g~lwi-~t~-~gl~~~~~~~~~~~-~~~~~---------~~~~~~i~~i~~d~~g~lwi-gt~ 191 (795)
T 4a2l_A 125 EKNGKHLQVNGIEEISPEQLLI-STP-EGLIMFDIKESKFI-DDSFS---------TAMHKTIASTLYRQGDQIYI-GTS 191 (795)
T ss_dssp EETTEECCCCEEEEEETTEEEE-EET-TEEEEEETTTTEEE-CSSSC---------HHHHTCCEEEEEEETTEEEE-EES
T ss_pred cccCCCceEEEEEECCCCCEEE-EEC-CceEEEECCCCEEE-eccCC---------CCCCcceEEEEECCCCCEEE-EEC
Confidence 211 17776 45565544 444 55899998776432 11100 00123 88888888886555 555
Q ss_pred CCeEEEEEccCCceeEEE-eccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhh------ccccceEEEE
Q psy14906 183 NKKIILHNILTDESLMEF-IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKK------AHRKVVTGAH 255 (583)
Q Consensus 183 d~~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~ 255 (583)
++.+..|+..+++..... ......|.++...+++. +..++.++-+..||..+++....... -....|.++.
T Consensus 192 ~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 269 (795)
T 4a2l_A 192 TDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR--IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLA 269 (795)
T ss_dssp SSCEEEEETTTCCEEECC----CCCEEEEEEEETTE--EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEE
T ss_pred CCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC--EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEE
Confidence 545889998766543321 12346788998888886 44555444599999887654322100 1235799999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEec-------cCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccc
Q psy14906 256 FLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIRE-------GHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSET 328 (583)
Q Consensus 256 ~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 328 (583)
..++|.+.+ |..+| +.+|+.. ......... -....|.++...+ ++ .|..|+.++-|..++..+..
T Consensus 270 ~d~~g~lWi-gt~~G-l~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g-~lWigt~~~Gl~~~~~~~~~ 341 (795)
T 4a2l_A 270 MDSQNRLWI-GTFND-LNIYHEG----TDSFASYSSNPVENGSLSQRSVRSIFMDS-QG-GMWLGTYFGGLNYYHPIRNR 341 (795)
T ss_dssp ECTTSCEEE-EESSC-EEEEETT----TTEEEEECCCTTSTTSCSSSCEEEEEECT-TS-CEEEEESSSCEEEECGGGGS
T ss_pred EcCCCCEEE-EeCCh-hheEcCC----CCeEEEEecCCCCCCCCCCCcEEEEEEeC-Cc-CEEEEECCCCeEEeCCCccc
Confidence 988887555 44454 7777542 122222111 1234678887764 34 57777777889999876554
Q ss_pred cceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccccc
Q psy14906 329 SNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCK 408 (583)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 408 (583)
... +..... ...+....+..+.. +.+..+-.++.++-+..|+.................
T Consensus 342 ~~~-~~~~~~--------------~~~l~~~~V~~i~~------d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 342 FKN-IRNIPY--------------KNSLSDNVVSCIVE------DKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESA 400 (795)
T ss_dssp SEE-ECCCTT--------------SSSCSCSSEEEEEE------CTTSCEEEEESSSCEEEECTTTCCEEEECCC-----
T ss_pred ceE-EcCCCC--------------CCCCCCCeeEEEEE------CCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcc
Confidence 321 110000 00001111111111 112334455666567777766543322211110000
Q ss_pred -ccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEE
Q psy14906 409 -QAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWH 487 (583)
Q Consensus 409 -~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 487 (583)
......|.+++..++++.|.+|+.++.|..||..+++........ ...+...|.++...+++++.+... + -+.+||
T Consensus 401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~-~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~ 477 (795)
T 4a2l_A 401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN-SQLVNENVYAILPDGEGNLWLGTL-S-ALVRFN 477 (795)
T ss_dssp -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT-SCCSCSCEEEEEECSSSCEEEEES-S-CEEEEE
T ss_pred cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC-CCcCCCeeEEEEECCCCCEEEEec-C-ceeEEe
Confidence 112256889999999986777887777999998877644322100 013456799999998888665443 4 488898
Q ss_pred ccCCCCCceEEee-------ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeec-------ccccceeeEEec
Q psy14906 488 FKQTGKPPLRSIK-------LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS-------GHMGQLTDADFS 553 (583)
Q Consensus 488 ~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~h~~~v~~l~~s 553 (583)
..++ +...... ....|.++...++|++.+.. . +-+..||..+++. .+. .+...|.++...
T Consensus 478 ~~~~--~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d 551 (795)
T 4a2l_A 478 PEQR--SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEA 551 (795)
T ss_dssp TTTT--EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEEC
T ss_pred CCCC--eEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEEC
Confidence 8764 3222111 12468889888888866654 4 4588999887665 222 134568899999
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccc
Q psy14906 554 PDSRWLITASMDCTIRVWDIPSSQL 578 (583)
Q Consensus 554 ~d~~~l~s~~~d~~i~vw~~~~~~~ 578 (583)
++|++.++.. . -|..||..+++.
T Consensus 552 ~~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 552 SNGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp TTSCEEEEES-S-CEEEEETTTTEE
T ss_pred CCCCEEEEeC-C-CceeECCCCCcE
Confidence 9998666443 4 478888776543
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.67 E-value=1.3e-14 Score=150.31 Aligned_cols=278 Identities=11% Similarity=0.041 Sum_probs=173.4
Q ss_pred CCCCCEEEEEecCCe---EEEEEcc-----CCceeEEEe------ccCCCeEEEEEecCCCCEEEEEc-CCC----cEEE
Q psy14906 171 SPVVDIIGVGLSNKK---IILHNIL-----TDESLMEFI------QTWGPVTALSFRTDGPPMMVSGS-NTG----HLTV 231 (583)
Q Consensus 171 s~~~~~l~~~~~d~~---i~iw~~~-----~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~-~dg----~i~v 231 (583)
+|+|++++....++. -.+|-.. .++....+. ++...+..++|||||+ +|+.+. .+| .|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-EEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEE
Confidence 488998887765432 4445443 333332222 2223688999999999 555443 333 5999
Q ss_pred EeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCe--------------EEEEEccCCCCCceeeEEeccCCCCC
Q psy14906 232 WNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNT--------------LKLWIFDKADGNGRLLRIREGHSAPP 297 (583)
Q Consensus 232 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~--------------i~~w~~~~~~~~~~~~~~~~~~~~~v 297 (583)
||+.+++.+... .+...+..++|+|| +.|+.++.++. |.+|++.........+.....+...+
T Consensus 194 ~dl~tg~~~~~~--~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 194 VGVADGKPLADE--LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG 270 (741)
T ss_dssp EETTTCCEEEEE--EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred EECCCCCCCCcc--CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence 999998875432 12223357899999 98888876654 77786543211122333333343457
Q ss_pred eeEEEeeCCCCEEEEeeCCC-----cEEEEEcccccc--ceeeccchhhhhhhhhhcchhccccccCCCccceeeeeccc
Q psy14906 298 NYIQFYGNSSDNILSAAGDS-----TLRIFNTKSETS--NKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAR 370 (583)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (583)
..+.|+| ||++|+..+.++ .|++||+.++.. ...+..
T Consensus 271 ~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~----------------------------------- 314 (741)
T 1yr2_A 271 HGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP----------------------------------- 314 (741)
T ss_dssp EEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-----------------------------------
T ss_pred EEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-----------------------------------
Confidence 8899997 898888776543 788888876511 111100
Q ss_pred ccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec----CceEEEEEcccC--
Q psy14906 371 EKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS----SGHVDRFNIQSG-- 444 (583)
Q Consensus 371 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~-- 444 (583)
+....... ++|+|+.|+..+. ++.|.+||+.++
T Consensus 315 ----------------------------------------~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 353 (741)
T 1yr2_A 315 ----------------------------------------DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTP 353 (741)
T ss_dssp ----------------------------------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSC
T ss_pred ----------------------------------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcc
Confidence 00112222 3488888887765 456999998875
Q ss_pred ccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeec--cCCeeeEEeccCCcEEEEEe-
Q psy14906 445 AHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL--DNGISFFRTHQESSMLAVCL- 521 (583)
Q Consensus 445 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~- 521 (583)
.....+ ..+...+..++++ ++.++++...|+..+||.+.... .....+.. ...+..+.++|+++.++...
T Consensus 354 ~~~~l~-----~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 354 RFDTVV-----PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG-KPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp EEEEEE-----CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-CEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred ccEEEe-----cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-CceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 223333 3445567778887 66788888899988888765321 44555543 35688899999998666433
Q ss_pred ---CCceEEEEEccccce
Q psy14906 522 ---DDFTVNIIDIDTCTI 536 (583)
Q Consensus 522 ---~dg~i~i~d~~~~~~ 536 (583)
..++|++||+.+++.
T Consensus 427 s~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 427 SFTQPATVLALDPATAKT 444 (741)
T ss_dssp ETTEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEECCCCcE
Confidence 247899999988763
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.66 E-value=4.9e-13 Score=122.69 Aligned_cols=279 Identities=10% Similarity=0.028 Sum_probs=189.6
Q ss_pred cCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q psy14906 203 TWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADG 282 (583)
Q Consensus 203 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~ 282 (583)
....+.++++.++|. ++++...++.|.+||.. ++............+.++++.++++++++...++.|..++.+ +
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~---g 92 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK---G 92 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT---S
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC---C
Confidence 346789999999998 77777778999999988 554331112234678899999999988777667888888543 2
Q ss_pred CceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccc
Q psy14906 283 NGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVS 362 (583)
Q Consensus 283 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (583)
... ..........+..+++.+ ++..+++...++.|..+|.. ++... +
T Consensus 93 ~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~-~----------------------------- 139 (300)
T 2qc5_A 93 GFT-EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYE-Y----------------------------- 139 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEE-E-----------------------------
T ss_pred CeE-EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEE-c-----------------------------
Confidence 222 122232345678899986 67777776667888888875 32211 0
Q ss_pred eeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcc
Q psy14906 363 QFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQ 442 (583)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 442 (583)
... .....+..+++++++++.++...++.|..++.
T Consensus 140 ----------------------------~~~----------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~- 174 (300)
T 2qc5_A 140 ----------------------------DLP----------------NKGSYPAFITLGSDNALWFTENQNNSIGRITN- 174 (300)
T ss_dssp ----------------------------ECS----------------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred ----------------------------cCC----------------CCCCCceeEEECCCCCEEEEecCCCeEEEECC-
Confidence 000 00145788999999997666666788999998
Q ss_pred cCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEE-ee-ccCCeeeEEeccCCcEEEEE
Q psy14906 443 SGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRS-IK-LDNGISFFRTHQESSMLAVC 520 (583)
Q Consensus 443 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~ 520 (583)
+++... +.. ..+...+.+++++++++++++....+.|.+|+. ++ ..... .. ....+.++++.++|++.++.
T Consensus 175 ~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 175 TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG--EISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC--CEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC--cEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 555433 211 244567899999999987777767778999998 33 33322 11 23568899999999977766
Q ss_pred eCCceEEEEEccccceEE-eecccccceeeEEecCCCcEEEEEeCCCeEEEEeCC
Q psy14906 521 LDDFTVNIIDIDTCTIIR-KLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 521 ~~dg~i~i~d~~~~~~~~-~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
..++.|..||. +++... .+......+.+++++++|++.++.. . .|..++.+
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 66789999998 454332 2333456789999999998766554 4 67777653
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=8.9e-13 Score=120.94 Aligned_cols=279 Identities=9% Similarity=-0.006 Sum_probs=186.0
Q ss_pred cCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEE
Q psy14906 110 HTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKII 187 (583)
Q Consensus 110 h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 187 (583)
......++ .++|+..++...++.|.+||.. ++... +... .....+..+++++++++.++...++.|.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~v~ 86 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP---------TPDAKVMCLIVSSLGDIWFTENGANKIG 86 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS---------STTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC---------CCCCcceeEEECCCCCEEEEecCCCeEE
Confidence 34455665 7888877776678999999988 55433 3221 3346789999999999888776678999
Q ss_pred EEEccCCceeE-EEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEE
Q psy14906 188 LHNILTDESLM-EFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTS 266 (583)
Q Consensus 188 iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 266 (583)
.+|.. ++... .+......+..+++.+++. ++++...++.|..||.. ++............+..+++.+++++.++.
T Consensus 87 ~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred EECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence 99987 55432 2222346789999999998 77777768899999987 554322112234578899999999977766
Q ss_pred eCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhh
Q psy14906 267 SPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRK 346 (583)
Q Consensus 267 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 346 (583)
..++.|..++. .+.... .....+...+..+++.+ ++...++....+.|.+||. ++.....
T Consensus 164 ~~~~~i~~~~~---~g~~~~-~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~-------------- 223 (300)
T 2qc5_A 164 NQNNSIGRITN---TGKLEE-YPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEY-------------- 223 (300)
T ss_dssp TTTTEEEEECT---TCCEEE-EECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEE--------------
T ss_pred cCCCeEEEECC---CCcEEE-eeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEE--------------
Confidence 66788888854 222221 22233445678899986 6766666666678888887 3221110
Q ss_pred cchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcE
Q psy14906 347 NRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNF 426 (583)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 426 (583)
... .....+.+++++++|++
T Consensus 224 --------------------------------------------~~~----------------~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 224 --------------------------------------------DIP----------------TPNARPHAITAGKNSEI 243 (300)
T ss_dssp --------------------------------------------ECS----------------STTCCEEEEEECSTTCE
T ss_pred --------------------------------------------ECC----------------CCCCCceEEEECCCCCE
Confidence 000 00145788999999987
Q ss_pred EEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEcc
Q psy14906 427 VLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFK 489 (583)
Q Consensus 427 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 489 (583)
.++...++.|..|+. ++... .+.. ......+.+++++++|+++++.. . .|..+|.+
T Consensus 244 ~v~~~~~~~i~~~~~-~g~~~-~~~~---~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 244 WFTEWGANQIGRITN-DNTIQ-EYQL---QTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEETTTTEEEEECT-TSCEE-EEEC---CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEeccCCCeEEEECC-CCcEE-EEEC---CccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 776666789999998 44433 2211 23455688999999998766655 4 67666653
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=5.1e-14 Score=145.99 Aligned_cols=283 Identities=10% Similarity=0.063 Sum_probs=172.7
Q ss_pred EccCCCEEEEEeCCC---cEEEEEcC-----CCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC-----
Q psy14906 117 ILPFGPHLISVDEES---NVKVWDIK-----AEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN----- 183 (583)
Q Consensus 117 is~~~~~l~s~~~dg---~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----- 183 (583)
.+|+|++++....++ .-.+|... .++...-+... ... .++...+..++|||||++||.+..+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~--~l~---~~~~~~~~~~~~SPDG~~la~~~~~~G~e~ 188 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPN--TWA---KDGATALDAWAASDDGRLLAYSVQDGGSDW 188 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGG--GCC-------EEEEEEEECTTSSEEEEEEEETTCSE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHH--Hhc---cCCCEEEEeEEECCCCCEEEEEEcCCCCce
Confidence 379999988765443 24555543 33322222111 000 0333478899999999999987654
Q ss_pred CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCc--------------EEEEeCCCCee----hhhhhh
Q psy14906 184 KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGH--------------LTVWNLEDRQV----ENQIKK 245 (583)
Q Consensus 184 ~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--------------i~vwd~~~~~~----~~~~~~ 245 (583)
..|++||+.+++.+... .+...+..++|+|| + .|+.++.++. |++|++.+++. +... .
T Consensus 189 ~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~ 264 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-P 264 (741)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-T
T ss_pred EEEEEEECCCCCCCCcc-CCCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-C
Confidence 46999999999876542 22223467899999 7 5655555443 89999977652 2222 2
Q ss_pred ccccceEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC----
Q psy14906 246 AHRKVVTGAHFLYNEPLLVTSSPDN-----TLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD---- 316 (583)
Q Consensus 246 ~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 316 (583)
.+...+..+.|+|||++|+..+.++ .|.+|+++.. .......+..+...+.... +| +++.|+..+.+
T Consensus 265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 265 ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG--KIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPL 340 (741)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT--EECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTT
T ss_pred CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC--CCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCC
Confidence 2334588999999999888777543 7888876532 1121334444444555553 45 67777777653
Q ss_pred CcEEEEEccccc-cceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcc
Q psy14906 317 STLRIFNTKSET-SNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKS 395 (583)
Q Consensus 317 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 395 (583)
+.|.+||+.++. ..+.+.
T Consensus 341 ~~l~~~d~~~~~~~~~~l~------------------------------------------------------------- 359 (741)
T 1yr2_A 341 KKIVRVDLSGSTPRFDTVV------------------------------------------------------------- 359 (741)
T ss_dssp CEEEEEECSSSSCEEEEEE-------------------------------------------------------------
T ss_pred CEEEEEeCCCCccccEEEe-------------------------------------------------------------
Confidence 448888876531 111110
Q ss_pred cccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcc-cCccccccCCCCCCCcccCeeEEEEeCCCcEE
Q psy14906 396 KMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQ-SGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIV 474 (583)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 474 (583)
..+...+..++++ ++.++++...++..++|.+. ++.....+. ..+.+.+..+.++|+++.|
T Consensus 360 -------------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~----~~~~~~v~~~~~s~d~~~l 421 (741)
T 1yr2_A 360 -------------PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS----LPGIGSASGLSGRPGDRHA 421 (741)
T ss_dssp -------------CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB----CSSSCEEEEEECCBTCSCE
T ss_pred -------------cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc----CCCCeEEEEeecCCCCCEE
Confidence 0000224455666 56677888888877776554 455444442 1246678899999998766
Q ss_pred EE----eecCCcEEEEEccCC
Q psy14906 475 IS----GGNDQTVKVWHFKQT 491 (583)
Q Consensus 475 ~s----~~~dg~i~iwd~~~~ 491 (583)
+. ....++|++||+.++
T Consensus 422 ~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 422 YLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEEETTEEEEEEEEETTTT
T ss_pred EEEEcCCCCCCEEEEEECCCC
Confidence 52 234578999999876
No 208
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.62 E-value=3.4e-10 Score=118.45 Aligned_cols=439 Identities=12% Similarity=0.031 Sum_probs=261.1
Q ss_pred CCCceEEEEeeCCeEEEEecCCcEEEeecCCCC-CC-eEEEEe--eCeEEEEEcCCeEEEEeccceeeeee--cccCccE
Q psy14906 41 RRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHE-DD-ITCLSS--DFFHIYTSANNIIYAWRRGIDIVGTY--KGHTSPV 114 (583)
Q Consensus 41 ~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~-~~-v~~~~~--~~~~~~~~~~~~i~vw~~~~~~~~~~--~~h~~~v 114 (583)
+.+..+.+.+. +-+..||.++++......++. .. |.++.. ++++.++..++.|..|+........+ ..+...|
T Consensus 139 d~~g~lwi~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i 217 (795)
T 4a2l_A 139 ISPEQLLISTP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQI 217 (795)
T ss_dssp EETTEEEEEET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCE
T ss_pred CCCCCEEEEEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCee
Confidence 33444444433 668899988876654333221 23 777776 46777777666788898654333332 1235668
Q ss_pred EEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccC-CceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEc
Q psy14906 115 HLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDN-DTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNI 191 (583)
Q Consensus 115 ~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~ 191 (583)
.++ .++|.+ ..++.++-|.+||..+++...... .. ... .-....|.++...++|.+.+ |+.+ -|.+||.
T Consensus 218 ~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~----~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 218 QAILQQSPTRI-WVATEGAGLFLINPKTKEIKNYLH-SPSNPK----SISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp EEEEEEETTEE-EEEEBSSCEEEEETTTTEEEEECC-CTTCTT----SCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred EEEEEcCCCCE-EEEECCCCeEEEeCCCCeEEEeec-CCCCcc----ccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 887 455554 444545459999988765443221 10 000 01246799999998887665 4455 5889998
Q ss_pred cCCceeEEEe-------ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhh--h---hccccceEEEEEecC
Q psy14906 192 LTDESLMEFI-------QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI--K---KAHRKVVTGAHFLYN 259 (583)
Q Consensus 192 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~---~~~~~~v~~~~~~~~ 259 (583)
.+++...... .....|.++...++|. |-.|+.++-|..|+..++....-. . .-....|.++...++
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC
Confidence 7665433221 1235799999999987 666777778999987654321110 0 012456899998888
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCceeeEEe------ccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceee
Q psy14906 260 EPLLVTSSPDNTLKLWIFDKADGNGRLLRIR------EGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 260 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 333 (583)
|++ ..|+.++-+..|+. ..+........ ......|.++...+ ++..|..|+.++-+..+|..+++.....
T Consensus 368 g~l-WiGt~~~Gl~~~~~--~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 368 KNL-WIGTNDGGLNLYNP--ITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFN 443 (795)
T ss_dssp SCE-EEEESSSCEEEECT--TTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred CCE-EEEECCCCeEEEcC--CCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence 874 45666666888843 22221111100 01235677887764 5654777887778999998765422110
Q ss_pred ccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCC
Q psy14906 334 GIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQS 413 (583)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (583)
... ......
T Consensus 444 ----------------------------------------------------------~~~-------------~~l~~~ 452 (795)
T 4a2l_A 444 ----------------------------------------------------------QRN-------------SQLVNE 452 (795)
T ss_dssp ----------------------------------------------------------TTT-------------SCCSCS
T ss_pred ----------------------------------------------------------cCC-------------CCcCCC
Confidence 000 000114
Q ss_pred CceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCC-CCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCC
Q psy14906 414 KPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHD-NQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTG 492 (583)
Q Consensus 414 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 492 (583)
.|.++...++|++.+.. .+| +.+||..+++........ ........|.++...+++++.+... +-|..||..+.
T Consensus 453 ~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~- 527 (795)
T 4a2l_A 453 NVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL- 527 (795)
T ss_dssp CEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT-
T ss_pred eeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC-
Confidence 57888888888765554 444 889998776543322100 0011346799999999998666544 45888988765
Q ss_pred CCceEEee--------ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEee--cc-cccceeeEEecCCCcEEEE
Q psy14906 493 KPPLRSIK--------LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKL--SG-HMGQLTDADFSPDSRWLIT 561 (583)
Q Consensus 493 ~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~-h~~~v~~l~~s~d~~~l~s 561 (583)
.. .+. ....|.++...++|.+.+.. .. -+..||.++++...-- .+ ....|.++...++|++.++
T Consensus 528 -~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~ 602 (795)
T 4a2l_A 528 -DI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLS 602 (795)
T ss_dssp -EE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred -eE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEE
Confidence 33 221 12468888888888866544 34 5888998766543211 11 1346888999888987665
Q ss_pred EeCCCeEEEEeCCCcc
Q psy14906 562 ASMDCTIRVWDIPSSQ 577 (583)
Q Consensus 562 ~~~d~~i~vw~~~~~~ 577 (583)
+ .. -|..|+..+++
T Consensus 603 t-~~-Gl~~~~~~~~~ 616 (795)
T 4a2l_A 603 T-NR-GISCFNPETEK 616 (795)
T ss_dssp E-TT-EEEEEETTTTE
T ss_pred c-CC-ceEEEcCCCCc
Confidence 5 33 46777776554
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=9.4e-13 Score=121.69 Aligned_cols=243 Identities=11% Similarity=0.101 Sum_probs=161.7
Q ss_pred cceEEEEEecCCCEEEE-------EeCCCeEEEEEccCCCCCceeeEE--eccCCCCCeeEEEeeCC-CCEEEEeeCCCc
Q psy14906 249 KVVTGAHFLYNEPLLVT-------SSPDNTLKLWIFDKADGNGRLLRI--REGHSAPPNYIQFYGNS-SDNILSAAGDST 318 (583)
Q Consensus 249 ~~v~~~~~~~~~~~l~s-------~~~d~~i~~w~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~ 318 (583)
....+++|+++++++++ ...++.|..|+.. ++....+.. ..++...+..+++++ + ++ |+.++..+.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~-l~v~~~~~~ 93 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK--TGKKTVICKPEVNGYGGIPAGCQCDR-DANQ-LFVADMRLG 93 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT--TCCEEEEECCEETTEECCEEEEEECS-SSSE-EEEEETTTE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC--CCcEEEEEecccCCCCCCCceEEEec-CCCc-EEEEECCCC
Confidence 35578999999988887 5678889999542 222221111 012445688999986 5 54 444444457
Q ss_pred EEEEEcccccccee-eccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccc
Q psy14906 319 LRIFNTKSETSNKN-LGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKM 397 (583)
Q Consensus 319 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 397 (583)
|.+||.. ++.... ....
T Consensus 94 l~~~d~~-g~~~~~~~~~~------------------------------------------------------------- 111 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDS------------------------------------------------------------- 111 (314)
T ss_dssp EEEEETT-SCEEECCSBCT-------------------------------------------------------------
T ss_pred EEEEeCC-CCEEEEEeccC-------------------------------------------------------------
Confidence 8889876 432111 0000
Q ss_pred cceeeecccccccCCCCceEEEEccCCcEEEEEecC---------------ceEEEEEcccCccccccCCCCCCCcccCe
Q psy14906 398 DDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS---------------GHVDRFNIQSGAHRGSYGHDNQPGHVGGV 462 (583)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~~h~~~v 462 (583)
.......+..++++++|++.++...+ +.|..|+.. ++..... .+....
T Consensus 112 ----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~------~~~~~~ 174 (314)
T 1pjx_A 112 ----------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD------TAFQFP 174 (314)
T ss_dssp ----------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE------EEESSE
T ss_pred ----------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec------cCCCCc
Confidence 00001357889999999887776654 578888765 4433222 344557
Q ss_pred eEEEEe----CCCcEEEEe-ecCCcEEEEEccCCCCCc-----eEEeecc--CCeeeEEeccCCcEEEEEeCCceEEEEE
Q psy14906 463 RGVVSD----NLNQIVISG-GNDQTVKVWHFKQTGKPP-----LRSIKLD--NGISFFRTHQESSMLAVCLDDFTVNIID 530 (583)
Q Consensus 463 ~~~~~s----~~~~~l~s~-~~dg~i~iwd~~~~~~~~-----~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~i~d 530 (583)
..++++ |+++.|+.+ ..++.|.+|++.... .. ...+... ..+..++++++|+++++...++.|.+||
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d 253 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-KIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-EEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC-ccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc
Confidence 889999 999765444 567899999987321 21 1122212 4578899999999888888889999999
Q ss_pred ccccceEEeecccccceeeEEecCCCcEE-EEEeCCCeEEEEeCCC
Q psy14906 531 IDTCTIIRKLSGHMGQLTDADFSPDSRWL-ITASMDCTIRVWDIPS 575 (583)
Q Consensus 531 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l-~s~~~d~~i~vw~~~~ 575 (583)
.++++.+..+..+...+.+++|++++++| ++...++.|..|++..
T Consensus 254 ~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 98788777777677789999999999955 4555668899999875
No 210
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.58 E-value=1.5e-12 Score=132.06 Aligned_cols=324 Identities=9% Similarity=0.044 Sum_probs=201.3
Q ss_pred CCEEEEEecCCeEEEEEccCCceeEEEeccCCC-----------eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh
Q psy14906 174 VDIIGVGLSNKKIILHNILTDESLMEFIQTWGP-----------VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242 (583)
Q Consensus 174 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 242 (583)
+..|.+++.++.|.-+|..+|+.+.++...... ...+++ ++. .++.++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~-~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKG-KVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECC-EEEEEcCCCEEEEEECCCCCEEee
Confidence 567777788899999999999999988754210 122333 233 688888999999999999998876
Q ss_pred hhhcc-c----cceEEEEEecCCCEEEEEeC------CCeEEEEEccCCCCCceeeEEeccCCC----------------
Q psy14906 243 IKKAH-R----KVVTGAHFLYNEPLLVTSSP------DNTLKLWIFDKADGNGRLLRIREGHSA---------------- 295 (583)
Q Consensus 243 ~~~~~-~----~~v~~~~~~~~~~~l~s~~~------d~~i~~w~~~~~~~~~~~~~~~~~~~~---------------- 295 (583)
+. .+ . ..+.+--...++ .++.++. ++.|..+|.. +++.+-.+.....
T Consensus 154 ~~-~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~----tG~~~W~~~~~~~~~~~~~~~~~~~~g~~ 227 (677)
T 1kb0_A 154 QN-TFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAE----TGERKWRWFSVPGDPSKPFEDESMKRAAR 227 (677)
T ss_dssp EE-TTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETT----TCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred ec-CCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECC----CCcEEEEeccCCCCccccccccccccccc
Confidence 62 22 1 112111111234 4444442 6888888554 3444433322111
Q ss_pred ----------------CCeeEEEeeCCCCEEEEeeCCCc-------------------EEEEEccccccceeeccchhhh
Q psy14906 296 ----------------PPNYIQFYGNSSDNILSAAGDST-------------------LRIFNTKSETSNKNLGIASANR 340 (583)
Q Consensus 296 ----------------~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~ 340 (583)
....+++.| ++..++.+..++. |..+|..+++.
T Consensus 228 ~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~----------- 295 (677)
T 1kb0_A 228 TWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY----------- 295 (677)
T ss_dssp TSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-----------
T ss_pred cccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE-----------
Confidence 113567776 5667777766543 33333333322
Q ss_pred hhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEE
Q psy14906 341 NNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYI 420 (583)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 420 (583)
+|........ ............+..
T Consensus 296 ------------------------------------------------~W~~~~~~~d-------~wd~~~~~~p~l~~~ 320 (677)
T 1kb0_A 296 ------------------------------------------------KWHYQETPGD-------NWDYTSTQPMILADI 320 (677)
T ss_dssp ------------------------------------------------EEEEESSTTC-------CSCCCCCSCCEEEEE
T ss_pred ------------------------------------------------EEEEecCCCc-------ccccccCCCcEEEec
Confidence 2222110000 000000022334444
Q ss_pred ccCC---cEEEEEecCceEEEEEcccCccccccCCCCCC------CcccCe------------------------eEEEE
Q psy14906 421 THCG---NFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQP------GHVGGV------------------------RGVVS 467 (583)
Q Consensus 421 s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~h~~~v------------------------~~~~~ 467 (583)
..+| +.++.++.+|.++++|..+|+.+..+...... .....+ ..+++
T Consensus 321 ~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~ 400 (677)
T 1kb0_A 321 KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF 400 (677)
T ss_dssp EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence 4577 68899999999999999999987654321000 000001 25788
Q ss_pred eCCCcEEEEeec-------------------------------------------CCcEEEEEccCCCCCceEEeeccCC
Q psy14906 468 DNLNQIVISGGN-------------------------------------------DQTVKVWHFKQTGKPPLRSIKLDNG 504 (583)
Q Consensus 468 s~~~~~l~s~~~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~ 504 (583)
+|+..+++.... .|.|..||+.++ +.+..+....+
T Consensus 401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~~~~~ 478 (677)
T 1kb0_A 401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ--KAAWSVEHVSP 478 (677)
T ss_dssp ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT--EEEEEEEESSS
T ss_pred cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC--cEEeecCCCCC
Confidence 998887776543 278999999998 88888887777
Q ss_pred eeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccc-cceeeEEecCCCcEEE-EEeC----------------CC
Q psy14906 505 ISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHM-GQLTDADFSPDSRWLI-TASM----------------DC 566 (583)
Q Consensus 505 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~-~~v~~l~~s~d~~~l~-s~~~----------------d~ 566 (583)
+....++.++.++++++.||.+++||.++++.+..+.... ..-.-+.|..+|+.++ ..+. .+
T Consensus 479 ~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~ 558 (677)
T 1kb0_A 479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPG 558 (677)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCC
T ss_pred CcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCC
Confidence 7777788888999999999999999999999998887443 2334466778887544 3222 36
Q ss_pred eEEEEeCCC
Q psy14906 567 TIRVWDIPS 575 (583)
Q Consensus 567 ~i~vw~~~~ 575 (583)
.+.+|.+..
T Consensus 559 ~l~~f~l~~ 567 (677)
T 1kb0_A 559 TVYTFVVGG 567 (677)
T ss_dssp EEEEEEETC
T ss_pred eEEEEeccc
Confidence 788888763
No 211
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=2.4e-09 Score=111.86 Aligned_cols=444 Identities=9% Similarity=-0.013 Sum_probs=260.3
Q ss_pred EEeCCCce-EEEEeeCCeEEEEecCCcEEEeecC----C---CCCCeEEEEee----CeEEEEEcCCeEEEEeccceeee
Q psy14906 38 FIRRRKET-LFVTCVGKAFHVYGCNHFKLLSVSP----Q---HEDDITCLSSD----FFHIYTSANNIIYAWRRGIDIVG 105 (583)
Q Consensus 38 ~~p~~~~~-~i~~~~~~~i~v~d~~~~~~~~~~~----~---h~~~v~~~~~~----~~~~~~~~~~~i~vw~~~~~~~~ 105 (583)
...|.+.. +-+.+.++-+..||.++.+...... . ....|.++..| +.+.+++.++.|..+|.......
T Consensus 71 i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~ 150 (781)
T 3v9f_A 71 VYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFT 150 (781)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEE
Confidence 33466555 5555555479999998877654311 1 12368888764 45666665667888997544444
Q ss_pred eecc------cCccEEEEc--cCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEE
Q psy14906 106 TYKG------HTSPVHLIL--PFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDII 177 (583)
Q Consensus 106 ~~~~------h~~~v~~is--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 177 (583)
.+.. ....|.++. ++| .|..+..++-|..+|..+++...-......... .....|.++...+++.+.
T Consensus 151 ~~~~~~~~~l~~~~i~~i~~d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~----l~~~~i~~i~~d~~g~lw 225 (781)
T 3v9f_A 151 HYNKSTVPALPSEQTWTATEAEDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS----LPGNDVRCIYKDTNGNIW 225 (781)
T ss_dssp EESTTTCTTCSCCCEEEEEEEETT-EEEEEETTTEEEEEETTTTEEEEECC------------CCSSEEEEEECTTCCEE
T ss_pred eeccCcccCCCccceEEEEECCCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCccc----CCCCceeEEEEcCCCCEE
Confidence 4421 234577773 444 455566665689999887654322110000000 124578999998888766
Q ss_pred EEEecCCeEEEEEccCCceeEEEe-------ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhh------
Q psy14906 178 GVGLSNKKIILHNILTDESLMEFI-------QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIK------ 244 (583)
Q Consensus 178 ~~~~~d~~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------ 244 (583)
+. +.+ -+.+||..+++...... .....|.++...++|. |..|+..+-|.++|..+++......
T Consensus 226 ig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~ 301 (781)
T 3v9f_A 226 IG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK--LWIATELNGIMILDLQQNQFLLPEQIRFEFI 301 (781)
T ss_dssp EE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE--EEEEESSSCEEEEETTCC---------CEEE
T ss_pred EE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC--EEEEeCCCCeEEECCCCCeeeeeeccccccc
Confidence 64 444 58999987664432211 1235799999888886 5666665668899988765432110
Q ss_pred -------hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEe-------ccCCCCCeeEEEeeCCCCEE
Q psy14906 245 -------KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIR-------EGHSAPPNYIQFYGNSSDNI 310 (583)
Q Consensus 245 -------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l 310 (583)
.-....|.++...++|. |..|..++-|..++. ........... ......|.++...+ + ..|
T Consensus 302 ~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~-g~l 376 (781)
T 3v9f_A 302 REGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN--APPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-Q-GKL 376 (781)
T ss_dssp CBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS--SCCSCEEEC----CCCSSCCSSSCEEEEEECT-T-SCE
T ss_pred cCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC--CCCcceeeccCccccccCCCCCcceEEEEEcC-C-CCE
Confidence 11345789999888887 445665566777743 22122221110 01234577777653 3 456
Q ss_pred EEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEe
Q psy14906 311 LSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLW 390 (583)
Q Consensus 311 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 390 (583)
..|+.++-|..||..++...... .
T Consensus 377 Wigt~~~Gl~~~~~~~~~~~~~~-~------------------------------------------------------- 400 (781)
T 3v9f_A 377 WIGTDGGGINVFENGKRVAIYNK-E------------------------------------------------------- 400 (781)
T ss_dssp EEEEBSSCEEEEETTEEEEECC----------------------------------------------------------
T ss_pred EEEeCCCcEEEEECCCCeEEEcc-C-------------------------------------------------------
Confidence 67776677888887653221100 0
Q ss_pred ecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCC
Q psy14906 391 SFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNL 470 (583)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 470 (583)
+. ......|.++...++|++.+ |+.++.+..++..+++...... . ......|.++...++
T Consensus 401 -------------~~---~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~-~--~~~~~~v~~i~~d~~ 460 (781)
T 3v9f_A 401 -------------NR---ELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIEL-E--KNELLDVRVFYEDKN 460 (781)
T ss_dssp -------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCS-T--TTCCCCEEEEEECTT
T ss_pred -------------CC---CCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEecc-C--CCCCCeEEEEEECCC
Confidence 00 00114578888887776554 6666679999987765433221 0 123567999999888
Q ss_pred CcEEEEeecCCcEEEEEccCCCCCceEEeec------cCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecc--
Q psy14906 471 NQIVISGGNDQTVKVWHFKQTGKPPLRSIKL------DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSG-- 542 (583)
Q Consensus 471 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 542 (583)
+++.+.. . +-|..+|..+. +....... ...|.++...++|.+.+. +.++-+..||.++++.......
T Consensus 461 g~lwigt-~-~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~ 535 (781)
T 3v9f_A 461 KKIWIGT-H-AGVFVIDLASK--KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEG 535 (781)
T ss_dssp SEEEEEE-T-TEEEEEESSSS--SCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTT
T ss_pred CCEEEEE-C-CceEEEeCCCC--eEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCC
Confidence 8755543 4 45888998775 33322211 246888888888876554 4434477888876654322111
Q ss_pred -cccceeeEEecCCCcEEEEEeCCCeEEEEeCCCcc
Q psy14906 543 -HMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577 (583)
Q Consensus 543 -h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~ 577 (583)
....|.++...++|.+.++. .+|.+..||..+++
T Consensus 536 l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 536 FCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp CSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred CCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence 23568899998898866644 46755888877664
No 212
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.57 E-value=6e-12 Score=119.41 Aligned_cols=306 Identities=11% Similarity=0.041 Sum_probs=188.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEE
Q psy14906 120 FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLME 199 (583)
Q Consensus 120 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 199 (583)
++..|+.++.++.|..+|.++|+.+.+......... .......+.+. ...++..+.+++.++.|..+|.++|+.+..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW--FSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C--CSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc--ccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 467788888899999999999999887764211000 00001222221 122456788888999999999999999988
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccce------EEEEEecCCCEEEEEeCCCeEE
Q psy14906 200 FIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVV------TGAHFLYNEPLLVTSSPDNTLK 273 (583)
Q Consensus 200 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~s~~~d~~i~ 273 (583)
.............. ++ .++.++.++.|..+|..+++.+... ... ..+ ...... +..++.+..++.+.
T Consensus 129 ~~~~~~~~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~-~~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 129 TKVAGEALSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTV-NLD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVS 201 (376)
T ss_dssp EECSSCCCSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEE-ECC-C-----CCCCCCEEE--TTEEEECCTTTEEE
T ss_pred EeCCCceEcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEE-eCC-CCceeecCCCCcEEE--CCEEEEEcCCCEEE
Confidence 77553222222222 44 6888888999999999999877665 221 111 112222 34677788889888
Q ss_pred EEEccCCCCCceeeEEeccCCC--C--------C-eeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhh
Q psy14906 274 LWIFDKADGNGRLLRIREGHSA--P--------P-NYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNN 342 (583)
Q Consensus 274 ~w~~~~~~~~~~~~~~~~~~~~--~--------v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 342 (583)
.+|.. .++.+........ . + ..... .+..++.++.++.+..+|..+++..-.
T Consensus 202 ~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~---------- 264 (376)
T 3q7m_A 202 AVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWK---------- 264 (376)
T ss_dssp EEETT----TCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEE----------
T ss_pred EEECC----CCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEee----------
Confidence 88553 2333333221110 0 1 11112 245777888889999999887754322
Q ss_pred hhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc
Q psy14906 343 LKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH 422 (583)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 422 (583)
... .....+. .
T Consensus 265 -------------------------------------------------~~~------------------~~~~~~~--~ 275 (376)
T 3q7m_A 265 -------------------------------------------------REL------------------GSVNDFI--V 275 (376)
T ss_dssp -------------------------------------------------ECC------------------CCEEEEE--E
T ss_pred -------------------------------------------------ccC------------------CCCCCce--E
Confidence 110 1111222 2
Q ss_pred CCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeec-
Q psy14906 423 CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL- 501 (583)
Q Consensus 423 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 501 (583)
++..+++++.++.+..+|..+++....... .....+..... .+..|+.++.+|.|.++|..++ +.+.....
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG--~~~~~~~~~ 347 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSD----LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG--RFVAQQKVD 347 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCEEEEECT----TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC--CEEEEEECC
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEeecc----cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC--cEEEEEecC
Confidence 466788888899999999999988766531 11222223333 2456888888999999999998 77776665
Q ss_pred cCCeeeEEeccCCcEEEEEeCCceEEEEE
Q psy14906 502 DNGISFFRTHQESSMLAVCLDDFTVNIID 530 (583)
Q Consensus 502 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 530 (583)
...+...... .+..|++++.+|.|+.|+
T Consensus 348 ~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 348 SSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred CCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 2333322112 355778889999999887
No 213
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.57 E-value=2.9e-13 Score=125.01 Aligned_cols=268 Identities=9% Similarity=-0.050 Sum_probs=171.7
Q ss_pred EEEEEcCCC----cEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEe----------CCCeEEEEEccCCCCCc
Q psy14906 219 MMVSGSNTG----HLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS----------PDNTLKLWIFDKADGNG 284 (583)
Q Consensus 219 ~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~d~~i~~w~~~~~~~~~ 284 (583)
.+++...++ +|.++|..+++.+.++..+. .+ .+.++||+++++++. .++.|.+||.. ..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~----T~ 106 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV----TF 106 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT----TC
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC----CC
Confidence 444444444 78899999999999985444 34 799999999888886 36889999654 45
Q ss_pred eeeEEeccC-------CCCCeeEEEeeCCCCEEEEeeC--CCcEEE--EEccccccceeeccchhhhhhhhhhcchhccc
Q psy14906 285 RLLRIREGH-------SAPPNYIQFYGNSSDNILSAAG--DSTLRI--FNTKSETSNKNLGIASANRNNLKRKNRLEKMN 353 (583)
Q Consensus 285 ~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (583)
+.+..+... ......+.++| |+++++.+.. +..+.+ +|+.+ ...+...
T Consensus 107 ~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~----------------- 165 (368)
T 1mda_H 107 LPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA----------------- 165 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-----------------
T ss_pred CEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-----------------
Confidence 556665432 13467899997 8989888864 356888 88765 2221000
Q ss_pred cccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCC-cEEEEEec
Q psy14906 354 EKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCG-NFVLIGYS 432 (583)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~ 432 (583)
. +..+.|++ +.+++.+.
T Consensus 166 ------------------------------------------------------------~--~~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 166 ------------------------------------------------------------S--CFHIHPGAAATHYLGSC 183 (368)
T ss_dssp ------------------------------------------------------------S--CCCCEEEETTEEECCCC
T ss_pred ------------------------------------------------------------C--ceEEccCCCeEEEEEcC
Confidence 0 01122333 22333445
Q ss_pred CceEEEEEccc-----CccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeec------
Q psy14906 433 SGHVDRFNIQS-----GAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL------ 501 (583)
Q Consensus 433 dg~i~i~d~~~-----~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 501 (583)
||.+.+.++.+ ++...... ........+. + .+++..++..+. +.+.+.|......+.+..+..
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~ 257 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK 257 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred CCCEEEEECccccccCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc
Confidence 66666666665 33221100 0001122233 3 666666666666 899999987542122222211
Q ss_pred -----cCCeeeEEeccCCcEEEEEeC---------CceEEEEEccccceEEeecccccceeeEEecCCCcE-EEEEe-CC
Q psy14906 502 -----DNGISFFRTHQESSMLAVCLD---------DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRW-LITAS-MD 565 (583)
Q Consensus 502 -----~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~-l~s~~-~d 565 (583)
......++++||++.++++.. ++.+.++|+.+++.+..+.... ....++|+|||++ +++.. .+
T Consensus 258 ~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~ 336 (368)
T 1mda_H 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGT 336 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTT
T ss_pred ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCC
Confidence 112233789999998887643 2456799999999998887543 6899999999984 56666 59
Q ss_pred CeEEEEeCCCcccccccC
Q psy14906 566 CTIRVWDIPSSQLIDCFQ 583 (583)
Q Consensus 566 ~~i~vw~~~~~~~~~~~~ 583 (583)
+.|.++|+.+++.+++++
T Consensus 337 ~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 337 EVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp TEEEEEESSSCEEEEECC
T ss_pred CeEEEEECCCCcEEEEEE
Confidence 999999999999988763
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.57 E-value=1.2e-12 Score=133.15 Aligned_cols=311 Identities=9% Similarity=0.054 Sum_probs=188.6
Q ss_pred CCEEEEEecCCeEEEEEccCCceeEEEeccCCC----------e-EEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh
Q psy14906 174 VDIIGVGLSNKKIILHNILTDESLMEFIQTWGP----------V-TALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242 (583)
Q Consensus 174 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 242 (583)
+..|.+++.++.|..+|..+|+.+.++...... + ..+.. ++. .++.++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKG-KVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECC-EEEEEccCCEEEEEECCCCCEeee
Confidence 667777888899999999999999998644221 1 11222 233 688888999999999999998766
Q ss_pred hhhc-ccc---ceEEEEEecCCCEEEEEe-----CCCeEEEEEccCCCCCceeeEEecc---------------------
Q psy14906 243 IKKA-HRK---VVTGAHFLYNEPLLVTSS-----PDNTLKLWIFDKADGNGRLLRIREG--------------------- 292 (583)
Q Consensus 243 ~~~~-~~~---~v~~~~~~~~~~~l~s~~-----~d~~i~~w~~~~~~~~~~~~~~~~~--------------------- 292 (583)
.... +.. .+.+--...++..++..+ .++.|..||.. +++.+-.+..
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~----tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAE----TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT----TCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECC----CCcEEEEecccCCCccccccccccccccccc
Confidence 6222 111 111100111454443322 36888888554 3344433321
Q ss_pred ----------CCCCCeeEEEeeCCCCEEEEeeCCCc-------------------EEEEEccccccceeeccchhhhhhh
Q psy14906 293 ----------HSAPPNYIQFYGNSSDNILSAAGDST-------------------LRIFNTKSETSNKNLGIASANRNNL 343 (583)
Q Consensus 293 ----------~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~ 343 (583)
+......+++.| +..+++.+..++. |..+|..+++.
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~-------------- 287 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY-------------- 287 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE--------------
T ss_pred CCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce--------------
Confidence 011112567776 5677887777654 33333333322
Q ss_pred hhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccC
Q psy14906 344 KRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHC 423 (583)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 423 (583)
+|........ .........+.......+
T Consensus 288 ---------------------------------------------~W~~~~~~~d-------~wd~~~~~~~~l~d~~~~ 315 (689)
T 1yiq_A 288 ---------------------------------------------VWHYQTTPGD-------AWDYTATQHMILAELPID 315 (689)
T ss_dssp ---------------------------------------------EEEEESSTTC-------CSCCCCCSCEEEEEEEET
T ss_pred ---------------------------------------------eEeeecCCcc-------cccccCCCCcEEEeeccC
Confidence 1222110000 000000011222223335
Q ss_pred Cc---EEEEEecCceEEEEEcccCccccccCCCCC-----------------------CCcc-----------cCeeEEE
Q psy14906 424 GN---FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQ-----------------------PGHV-----------GGVRGVV 466 (583)
Q Consensus 424 ~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------------~~h~-----------~~v~~~~ 466 (583)
|+ .++.++.+|.++++|..+|+.+........ .... ..-..++
T Consensus 316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a 395 (689)
T 1yiq_A 316 GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS 395 (689)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence 64 788899999999999999998643211100 0000 0112378
Q ss_pred EeCCCcEEEEeec---------------------------------------------CCcEEEEEccCCCCCceEEeec
Q psy14906 467 SDNLNQIVISGGN---------------------------------------------DQTVKVWHFKQTGKPPLRSIKL 501 (583)
Q Consensus 467 ~s~~~~~l~s~~~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~ 501 (583)
++|+..+++.... +|.|+.||+.++ +.+.....
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~~ 473 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ--QAAWEVPY 473 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT--EEEEEEEE
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC--CeEeEccC
Confidence 8998877776422 377999999999 88888887
Q ss_pred cCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccc-eeeEEecCCCcEEE
Q psy14906 502 DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQ-LTDADFSPDSRWLI 560 (583)
Q Consensus 502 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~-v~~l~~s~d~~~l~ 560 (583)
..+...-.++..+.++++++.||.++.||.++|+.+.+++...+. -.-+.|..||+..+
T Consensus 474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 776666677778899999999999999999999999888754332 24567788887543
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.56 E-value=3.8e-13 Score=124.29 Aligned_cols=278 Identities=6% Similarity=-0.054 Sum_probs=180.3
Q ss_pred eEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEc---------CCCcEEEEeCCCCeehhhhhhcc------cc
Q psy14906 185 KIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGS---------NTGHLTVWNLEDRQVENQIKKAH------RK 249 (583)
Q Consensus 185 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~------~~ 249 (583)
.|.++|..+++.+.++.....+ .+.++||+++++++.. .++.|.+||+.+++.+.++..+. ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999866566 7999999995444431 46889999999999988873220 12
Q ss_pred ceEEEEEecCCCEEEEEeC--CCeEEE--EEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEcc
Q psy14906 250 VVTGAHFLYNEPLLVTSSP--DNTLKL--WIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTK 325 (583)
Q Consensus 250 ~v~~~~~~~~~~~l~s~~~--d~~i~~--w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 325 (583)
....++++|||++++++.. +..+.+ +|.. + +..+..- +. ....|.....+++.+.||.+.+.|+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~--t-----v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS--D-----DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTE--E-----EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchh--h-----ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 4567899999999998864 467888 7442 1 3333211 11 12234334566677788888888887
Q ss_pred c-----cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccce
Q psy14906 326 S-----ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDM 400 (583)
Q Consensus 326 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 400 (583)
+ ++...... . .++.
T Consensus 194 ~~~~~~~~v~~~~t-~----------------------------------------------------~i~v-------- 212 (368)
T 1mda_H 194 AAPAAAGIVGAQCT-G----------------------------------------------------AQNC-------- 212 (368)
T ss_dssp SSCCCCEECCCCSC-T----------------------------------------------------TSCB--------
T ss_pred cccccCCeEEEEee-e----------------------------------------------------eeeC--------
Confidence 5 22110000 0 0000
Q ss_pred eeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCc--cccccCCCC-----CCCcccCeeEEEEeCCCcE
Q psy14906 401 FLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGA--HRGSYGHDN-----QPGHVGGVRGVVSDNLNQI 473 (583)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-----~~~h~~~v~~~~~s~~~~~ 473 (583)
. ..+. . .+++..++..+. +.+.+.|..++. ....+.... ..........++++|+++.
T Consensus 213 ---------g-~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 213 ---------S-SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp ---------C-SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred ---------C-CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 0 0122 3 556666555555 889999986543 222221100 0001122223789999987
Q ss_pred EEEeec---------CCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcE-EEEEe-CCceEEEEEccccceEEeecc
Q psy14906 474 VISGGN---------DQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSM-LAVCL-DDFTVNIIDIDTCTIIRKLSG 542 (583)
Q Consensus 474 l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~dg~i~i~d~~~~~~~~~~~~ 542 (583)
++.+.. ++.+.++|+.+. +.+..+........++|+|||+. +++.. .++.|.++|+.+++.+.++..
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~--~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVG--QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSC--CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEEEeccccCcccccCCCEEEEECCCC--eEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 776532 235669999998 88888888788999999999985 45555 489999999999999999885
Q ss_pred cccceeeEEecC
Q psy14906 543 HMGQLTDADFSP 554 (583)
Q Consensus 543 h~~~v~~l~~s~ 554 (583)
... ...+++.+
T Consensus 356 g~~-P~~i~~~~ 366 (368)
T 1mda_H 356 DKG-PESLSVQN 366 (368)
T ss_dssp CSC-CCEEECCC
T ss_pred CCC-CCEEEeec
Confidence 543 45566543
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=2e-12 Score=119.48 Aligned_cols=232 Identities=11% Similarity=-0.000 Sum_probs=157.4
Q ss_pred CcccEEEEEeCCCceEEE-------EeeCCeEEEEecCCcEEEeecC----CCCCCeEEEEe--e-CeEEEEEcCCeEEE
Q psy14906 31 HLPVVARFIRRRKETLFV-------TCVGKAFHVYGCNHFKLLSVSP----QHEDDITCLSS--D-FFHIYTSANNIIYA 96 (583)
Q Consensus 31 ~~~~~~~~~p~~~~~~i~-------~~~~~~i~v~d~~~~~~~~~~~----~h~~~v~~~~~--~-~~~~~~~~~~~i~v 96 (583)
..|..++|.|++ ..+++ ...++.|.+||.++++...... ++...+.++++ + +++.+++.++.|.+
T Consensus 18 ~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 356788897554 33444 3578899999988877654332 35567888887 5 67777776678999
Q ss_pred Eeccceeeee-ecc----cCccEEEE--ccCCCEEEEEeCC---------------CcEEEEEcCCCcEEEEeeccCCce
Q psy14906 97 WRRGIDIVGT-YKG----HTSPVHLI--LPFGPHLISVDEE---------------SNVKVWDIKAEETYLELSFDNDTF 154 (583)
Q Consensus 97 w~~~~~~~~~-~~~----h~~~v~~i--s~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~ 154 (583)
||.+++.... ... ....+.++ +++|+.+++...+ +.|..||.. ++.....
T Consensus 97 ~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~------- 168 (314)
T 1pjx_A 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD------- 168 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-------
T ss_pred EeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-------
Confidence 9987543322 221 11235555 8889877776554 567777765 5543322
Q ss_pred EEecccCCcceEEEeeC----CCCCEEEEE-ecCCeEEEEEcc-CCce-----eEEEeccC-CCeEEEEEecCCCCEEEE
Q psy14906 155 KIMGKRWNSCVNVLEPS----PVVDIIGVG-LSNKKIILHNIL-TDES-----LMEFIQTW-GPVTALSFRTDGPPMMVS 222 (583)
Q Consensus 155 ~~~~~~~~~~i~~~~~s----~~~~~l~~~-~~d~~i~iw~~~-~~~~-----~~~~~~~~-~~v~~~~~~~~~~~~l~s 222 (583)
.+......++++ |+++.|.++ ..++.|.+|+.. +++. ...+..+. ..+..++++++|. ++++
T Consensus 169 -----~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~ 242 (314)
T 1pjx_A 169 -----TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVA 242 (314)
T ss_dssp -----EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEE
T ss_pred -----cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEE
Confidence 223346788999 999766555 567899999986 4432 22333333 5688999999998 7777
Q ss_pred EcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEE-EEeCCCeEEEEEcc
Q psy14906 223 GSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLV-TSSPDNTLKLWIFD 278 (583)
Q Consensus 223 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~ 278 (583)
...++.|.+||.++++....+ ..+...+.+++|+++++.|+ +...++.|..|+++
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 767889999999877766666 45557899999999999554 44556788888664
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.54 E-value=8.1e-12 Score=118.87 Aligned_cols=243 Identities=13% Similarity=0.112 Sum_probs=160.7
Q ss_pred cceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCC--cEEEEEccc
Q psy14906 249 KVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDS--TLRIFNTKS 326 (583)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 326 (583)
.....++|+++++++++...++.|+.|+.+ .......... ..... ++|+| +++.|+.+..++ .|.+++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~----~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVD----DNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETT----TTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECC----CCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCC
Confidence 467889999999977777777999999654 2333333332 23334 89997 788888888765 788888765
Q ss_pred cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccc
Q psy14906 327 ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPER 406 (583)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 406 (583)
+.....+..
T Consensus 204 ~~~~~~~g~----------------------------------------------------------------------- 212 (409)
T 3hrp_A 204 GWAPTRIGQ----------------------------------------------------------------------- 212 (409)
T ss_dssp TTCEEEEEE-----------------------------------------------------------------------
T ss_pred CceeEEeee-----------------------------------------------------------------------
Confidence 432111100
Q ss_pred ccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCe--eEEEEeCC-CcEEEEeecCCcE
Q psy14906 407 CKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGV--RGVVSDNL-NQIVISGGNDQTV 483 (583)
Q Consensus 407 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v--~~~~~s~~-~~~l~s~~~dg~i 483 (583)
........+.+++++|++..|+++..++.|+.||..++....... ....++...- ..++|+|+ +.++++-..++.|
T Consensus 213 ~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~-~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 213 LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ-LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE-CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec-ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 000001456789999965556667778999999998765432200 0002222222 39999995 6666776778899
Q ss_pred EEEEccCCCCCceEEeec---------------cCCeeeEEeccCCcEEEEEe-CCceEEEEEccccceEEeeccc----
Q psy14906 484 KVWHFKQTGKPPLRSIKL---------------DNGISFFRTHQESSMLAVCL-DDFTVNIIDIDTCTIIRKLSGH---- 543 (583)
Q Consensus 484 ~iwd~~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~h---- 543 (583)
+.|+.... ....... -.....++++|+|+++++-. .++.|+.|++.+++.. .+.++
T Consensus 292 ~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~ 367 (409)
T 3hrp_A 292 YKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVA 367 (409)
T ss_dssp EEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCB
T ss_pred EEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCC
Confidence 99987643 2222111 13478899999999777777 7899999998777643 33333
Q ss_pred -----------ccceeeEEecCCCcEEEEEeCCCeEEEEeCC
Q psy14906 544 -----------MGQLTDADFSPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 544 -----------~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
-.....+++++++.++++-..++.|+.++++
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 2457889999999888888888889888753
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.53 E-value=2.9e-12 Score=130.25 Aligned_cols=345 Identities=11% Similarity=0.020 Sum_probs=197.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCC-cce-EEEeeCCCCCEEEEEecCCeEEEEEccCCcee
Q psy14906 120 FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWN-SCV-NVLEPSPVVDIIGVGLSNKKIILHNILTDESL 197 (583)
Q Consensus 120 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~i-~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 197 (583)
.+..|+.++.++.|.-+|..+|+.+.+.......... .... ..+ ..+++ ++..|++++.|+.|..+|.++|+.+
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRA--GEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGG--GGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccc--ccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence 3667777778899999999999999888643211000 0000 000 11112 4668888999999999999999999
Q ss_pred EEEecc--CCCeEEEEEec---CCCCEEEEEc------CCCcEEEEeCCCCeehhhhhh---------------------
Q psy14906 198 MEFIQT--WGPVTALSFRT---DGPPMMVSGS------NTGHLTVWNLEDRQVENQIKK--------------------- 245 (583)
Q Consensus 198 ~~~~~~--~~~v~~~~~~~---~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~--------------------- 245 (583)
.++... ......+..+| ++. ++.++ .+|.|..||..+|+.+..+..
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 887642 11111111112 453 55543 368999999999987655421
Q ss_pred ---------ccccceEEEEEecCCCEEEEEeCCCe-------------------EEEEEccCCCCCceeeEEecc--CCC
Q psy14906 246 ---------AHRKVVTGAHFLYNEPLLVTSSPDNT-------------------LKLWIFDKADGNGRLLRIREG--HSA 295 (583)
Q Consensus 246 ---------~~~~~v~~~~~~~~~~~l~s~~~d~~-------------------i~~w~~~~~~~~~~~~~~~~~--~~~ 295 (583)
++......++++|++.+++.+..++. |..+|.+ +++.+-.++. |..
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----TG~~~W~~~~~~~d~ 298 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----TGEYVWHYQTTPGDA 298 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----TCCEEEEEESSTTCC
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----CCceeEeeecCCccc
Confidence 01111135788998888888887753 7777544 3444444332 321
Q ss_pred -------CCeeEEEeeCCCC---EEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceee
Q psy14906 296 -------PPNYIQFYGNSSD---NILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFS 365 (583)
Q Consensus 296 -------~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (583)
++...... .+++ .++.++.+|.++++|..+++.+.........-.. . .+.....+ ..
T Consensus 299 wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~-----~----~~~~~~~p---i~ 365 (689)
T 1yiq_A 299 WDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK-----G----MDMKTGRP---IL 365 (689)
T ss_dssp SCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE-----E----EETTTTEE---EE
T ss_pred ccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc-----c----cCccCCCc---cc
Confidence 11111111 1454 7889999999999999999876543211100000 0 00000000 00
Q ss_pred eeccc--ccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec-----------
Q psy14906 366 FGLAR--EKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS----------- 432 (583)
Q Consensus 366 ~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------- 432 (583)
..... ..+....+++... ... ..-..++++|+..++++...
T Consensus 366 ~~~~~~~~~~~~~~~~~p~~------------------------~Gg--~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 419 (689)
T 1yiq_A 366 DEENAAYWKNGKRNLVTPAF------------------------WGA--HDWQPMSYNPDTGLVYIPAHIMSAYYEHIPE 419 (689)
T ss_dssp CHHHHCTTTSSSCEEESSCT------------------------TCS--SCSSCCEEETTTTEEEEEEEECCEEEECCSS
T ss_pred chhhccccCCCCeeEeCCCc------------------------ccc--cCCCcceECCCCCEEEEeccccceeeeeccc
Confidence 00000 0000000000000 000 11233566776666665422
Q ss_pred ----------------------------------CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEee
Q psy14906 433 ----------------------------------SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG 478 (583)
Q Consensus 433 ----------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 478 (583)
+|.|..||+.+++....+. +..++..-.+...+.+++.++
T Consensus 420 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~------~~~~~~~g~~~tagglvf~gt 493 (689)
T 1yiq_A 420 APKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP------YVTIFNGGTLSTAGNLVFEGS 493 (689)
T ss_dssp CCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE------ESSSCCCCEEEETTTEEEEEC
T ss_pred cccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc------CCCCccCccceECCCEEEEEC
Confidence 4889999999999887762 222333345666778899999
Q ss_pred cCCcEEEEEccCCCCCceEEeeccCCe--eeEEeccCCc-EEEEEe
Q psy14906 479 NDQTVKVWHFKQTGKPPLRSIKLDNGI--SFFRTHQESS-MLAVCL 521 (583)
Q Consensus 479 ~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~s~~~~-~l~~~~ 521 (583)
.||.++.||.+++ +.+..++....+ .-+.|..+|+ |+++.+
T Consensus 494 ~dg~l~a~D~~tG--~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 494 ADGRVIAYAADTG--EKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp TTSEEEEEETTTC--CEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcEEEEECCCC--ccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 9999999999999 899888766543 3477788888 444443
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.53 E-value=3.8e-12 Score=129.18 Aligned_cols=345 Identities=11% Similarity=0.014 Sum_probs=200.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEE
Q psy14906 120 FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLME 199 (583)
Q Consensus 120 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 199 (583)
.+..|+.++.++.|.-+|..+|+.+.+.....................+++ ++..|++++.|+.+..+|..+|+.+.+
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 356677777789999999999999988874321100000000000011222 467888889999999999999999998
Q ss_pred Eecc-C----CCeEEEEEecCCCCEEEEEcC------CCcEEEEeCCCCeehhhhhhc----------------------
Q psy14906 200 FIQT-W----GPVTALSFRTDGPPMMVSGSN------TGHLTVWNLEDRQVENQIKKA---------------------- 246 (583)
Q Consensus 200 ~~~~-~----~~v~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~---------------------- 246 (583)
+... . ..+.+--...++ .++.++. ++.|+.||..+|+.+..+...
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 8754 1 112211111244 4555543 689999999999877554211
Q ss_pred ---------cccceEEEEEecCCCEEEEEeCCC-------------------eEEEEEccCCCCCceeeEEeccCC----
Q psy14906 247 ---------HRKVVTGAHFLYNEPLLVTSSPDN-------------------TLKLWIFDKADGNGRLLRIREGHS---- 294 (583)
Q Consensus 247 ---------~~~~v~~~~~~~~~~~l~s~~~d~-------------------~i~~w~~~~~~~~~~~~~~~~~~~---- 294 (583)
.......++++|++..++.+..++ .|..+ |..+++.........|.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~Al--D~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL--DPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE--CTTTCCEEEEEESSTTCCSCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEE--ECCCCCEEEEEecCCCccccc
Confidence 111123578899988888877664 36666 54433322222222231
Q ss_pred ---CCCeeEEEeeCCC---CEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeec
Q psy14906 295 ---APPNYIQFYGNSS---DNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGL 368 (583)
Q Consensus 295 ---~~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (583)
....-+.... +| ..++.++.+|.++++|..+++.+..+....... ...+
T Consensus 310 ~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~--------------------~~~~---- 364 (677)
T 1kb0_A 310 TSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW--------------------ASGY---- 364 (677)
T ss_dssp CCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS--------------------EEEE----
T ss_pred ccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc--------------------cccc----
Confidence 1122223322 56 689999999999999999998765542211000 0000
Q ss_pred ccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec----------------
Q psy14906 369 AREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS---------------- 432 (583)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------------- 432 (583)
. ..+.... +................... ..-..++++|++.++++...
T Consensus 365 ------------d-~~g~~~~-~~~~~~~~~~~~~~P~~~G~--~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 365 ------------D-KHGKPIG-IAAARDGSKPQDAVPGPYGA--HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp ------------C-TTSCEEE-CGGGGCTTSCEECSSCTTCS--SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred ------------C-CCCceee-ccccCcCCCccEECcCcccc--cCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 0 0000000 00000000000000000000 11235677887777776543
Q ss_pred ---------------------------CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEE
Q psy14906 433 ---------------------------SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKV 485 (583)
Q Consensus 433 ---------------------------dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 485 (583)
.|.|..||+.+++....+ .+..++....+..++.+++.++.||.+++
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~------~~~~~~~~g~~~~~g~~v~~g~~dg~l~a 502 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV------EHVSPWNGGTLTTAGNVVFQGTADGRLVA 502 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE------EESSSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec------CCCCCCcCcceEeCCCEEEEECCCCcEEE
Confidence 278999999999988776 23344555566777888888999999999
Q ss_pred EEccCCCCCceEEeeccCCe--eeEEeccCCcEEEE
Q psy14906 486 WHFKQTGKPPLRSIKLDNGI--SFFRTHQESSMLAV 519 (583)
Q Consensus 486 wd~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~ 519 (583)
||..++ +.+..+.....+ .-+.|.++|+.+++
T Consensus 503 ~D~~tG--~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 503 YHAATG--EKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EETTTC--CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECCCC--ceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 999999 898888766533 44566788874443
No 220
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=8.7e-09 Score=107.57 Aligned_cols=448 Identities=11% Similarity=0.057 Sum_probs=257.8
Q ss_pred EEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCC--------CCCeEEEEee--Ce-EEEEEcCCeEEEEeccceeee
Q psy14906 37 RFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQH--------EDDITCLSSD--FF-HIYTSANNIIYAWRRGIDIVG 105 (583)
Q Consensus 37 ~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h--------~~~v~~~~~~--~~-~~~~~~~~~i~vw~~~~~~~~ 105 (583)
+...|.+..+=+++.++ +..||-.+.+.... ... ...|.++..| ++ +-+++.++.+..||.......
T Consensus 23 ~I~qD~~G~lWigT~~G-L~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~ 100 (781)
T 3v9f_A 23 SITQDKQGFLWFATEEG-LNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFS 100 (781)
T ss_dssp EEEECTTSCEEEEESSC-EEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEE
T ss_pred EEEECCCCCEEEccCCc-CccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEE
Confidence 34447777666665554 77788666554433 211 3458888875 56 777777657999997644444
Q ss_pred eecc--------cCccEEEEccC---CCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCC
Q psy14906 106 TYKG--------HTSPVHLILPF---GPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVV 174 (583)
Q Consensus 106 ~~~~--------h~~~v~~is~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 174 (583)
.+.. ....|.+|..+ ...|..++.++.|..+|.++++... +...... ......|.++...+++
T Consensus 101 ~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~-----~l~~~~i~~i~~d~~g 174 (781)
T 3v9f_A 101 VYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTH-YNKSTVP-----ALPSEQTWTATEAEDG 174 (781)
T ss_dssp EECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEE-ESTTTCT-----TCSCCCEEEEEEEETT
T ss_pred eeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEe-eccCccc-----CCCccceEEEEECCCC
Confidence 4311 12368887333 2455556645668899988765432 2211000 0113468888887777
Q ss_pred CEEEEEecCCeEEEEEccCCceeEEEe-------ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhh--
Q psy14906 175 DIIGVGLSNKKIILHNILTDESLMEFI-------QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKK-- 245 (583)
Q Consensus 175 ~~l~~~~~d~~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-- 245 (583)
.+.+ ++.++-+..||..+++...-.. .....|.++...+++. |..|+.+ -+.+||..+++.......
T Consensus 175 ~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lwigt~~-Gl~~~d~~~~~~~~~~~~~~ 250 (781)
T 3v9f_A 175 KLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IWIGTSK-GLALFNANTETFTNFHNNPG 250 (781)
T ss_dssp EEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EEEEETT-EEEEEETTTTEEEC------
T ss_pred CEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EEEEeCC-cHheECCCCCcEEEEEcCCC
Confidence 6555 5566568899987665432111 1125689998888887 4444545 689999887654432201
Q ss_pred ----ccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEE-------e-----ccCCCCCeeEEEeeCCCCE
Q psy14906 246 ----AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRI-------R-----EGHSAPPNYIQFYGNSSDN 309 (583)
Q Consensus 246 ----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~~ 309 (583)
.....|.++...++|.+. .|...+-+.+++... ........ . ......|.++...+ ++ .
T Consensus 251 ~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g-~ 325 (781)
T 3v9f_A 251 NIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQ--NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FN-N 325 (781)
T ss_dssp -----CCCCEEEEEECTTSEEE-EEESSSCEEEEETTC--C---------CEEECBCSSTTSBSSSCEEEEEECS-SC-C
T ss_pred ccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCC--CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CC-C
Confidence 124578999888887644 455534577775432 11111111 0 11234677777764 34 5
Q ss_pred EEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEE
Q psy14906 310 ILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSL 389 (583)
Q Consensus 310 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 389 (583)
|..|+.++-|..++.......... ..
T Consensus 326 lWigt~~~Gl~~~~~~~~~~~~~~-~~----------------------------------------------------- 351 (781)
T 3v9f_A 326 IWIGTWGGGINFISNAPPTFHTWS-YS----------------------------------------------------- 351 (781)
T ss_dssp EEEEEBSSCEEEECSSCCSCEEEC--------------------------------------------------------
T ss_pred EEEEecCCeEEEeCCCCCcceeec-cC-----------------------------------------------------
Confidence 667777777888887654321100 00
Q ss_pred eecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC
Q psy14906 390 WSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN 469 (583)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 469 (583)
... ..........|.+++..++|.+ .+|+.++.|..|+..++......... ......|.++...+
T Consensus 352 ----~~~--------~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~d~ 416 (781)
T 3v9f_A 352 ----PTQ--------MNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENR--ELLSNSVLCSLKDS 416 (781)
T ss_dssp ------C--------CCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEEECT
T ss_pred ----ccc--------cccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCC--CCCCcceEEEEECC
Confidence 000 0000001145788888887764 45665666999998765433221100 23456799999988
Q ss_pred CCcEEEEeecCCcEEEEEccCCCCCceEEee----ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeeccc--
Q psy14906 470 LNQIVISGGNDQTVKVWHFKQTGKPPLRSIK----LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGH-- 543 (583)
Q Consensus 470 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h-- 543 (583)
++.+.+ |+.++-+..++..++ +. ..+. ....|.++...++|.+.+ |+. +-+..||..+++........
T Consensus 417 ~g~lWi-gt~~~Gl~~~~~~~~--~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~ 490 (781)
T 3v9f_A 417 EGNLWF-GTYLGNISYYNTRLK--KF-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNS 490 (781)
T ss_dssp TSCEEE-EETTEEEEEECSSSC--EE-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTS
T ss_pred CCCEEE-EeccCCEEEEcCCCC--cE-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCccc
Confidence 887555 555566888887664 32 2222 235688888888877554 445 56889998876543322211
Q ss_pred ---ccceeeEEecCCCcEEEEEeCCCeEEEEeCCCcc
Q psy14906 544 ---MGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQ 577 (583)
Q Consensus 544 ---~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~ 577 (583)
...|.++...++|++.+....+| |..|+..+++
T Consensus 491 ~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~ 526 (781)
T 3v9f_A 491 QLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQL 526 (781)
T ss_dssp SCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCE
T ss_pred ccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCe
Confidence 35789999999988666443344 7778876554
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.52 E-value=1.8e-11 Score=113.15 Aligned_cols=218 Identities=11% Similarity=0.017 Sum_probs=144.8
Q ss_pred CcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eCeEEEEEcCCeEEEEeccceeeeeec
Q psy14906 31 HLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DFFHIYTSANNIIYAWRRGIDIVGTYK 108 (583)
Q Consensus 31 ~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~i~vw~~~~~~~~~~~ 108 (583)
..+....|+|++...+++...++.|..||.++++..... ....+.++++ ++++++++. ..|.+||........+.
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~--~~~~v~~i~~~~dg~l~v~~~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE--CCCcceEEEEeCCCeEEEEEC-CCEEEEECCCCcEEEEe
Confidence 456778899887776666667899999999987654322 3457888876 667777764 45999997433333332
Q ss_pred cc-----CccEEEE--ccCCCEEEEEeC------CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCC
Q psy14906 109 GH-----TSPVHLI--LPFGPHLISVDE------ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVD 175 (583)
Q Consensus 109 ~h-----~~~v~~i--s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 175 (583)
.. ...+..+ +|+|+++++... .+.|..++ +++.. .+. ........++|+||++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~-----------~~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLF-----------ADISIPNSICFSPDGT 191 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEE-----------EEESSEEEEEECTTSC
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-Eee-----------CCCcccCCeEEcCCCC
Confidence 21 2346665 899987765432 24455555 45433 222 2223467899999998
Q ss_pred EEEEE-ecCCeEEEEEcc--CC-ce-----eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhc
Q psy14906 176 IIGVG-LSNKKIILHNIL--TD-ES-----LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKA 246 (583)
Q Consensus 176 ~l~~~-~~d~~i~iw~~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 246 (583)
.|+.+ +.++.|.+|++. ++ +. ...+......+..+++.++|. +.++...++.|.+||. +++.+..+ ..
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~~~~i-~~ 268 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARY-EV 268 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEE-EC
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCEEEEE-EC
Confidence 77555 456899999985 55 32 222223345678899999998 6666656678999998 56666666 44
Q ss_pred cccceEEEEEe-cCCCEEEEEeC
Q psy14906 247 HRKVVTGAHFL-YNEPLLVTSSP 268 (583)
Q Consensus 247 ~~~~v~~~~~~-~~~~~l~s~~~ 268 (583)
+...+.+++|. ++++.|+.++.
T Consensus 269 ~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCcEEEEEecCCCCEEEEEec
Confidence 55679999998 88876655443
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.52 E-value=3.3e-11 Score=114.27 Aligned_cols=307 Identities=9% Similarity=0.019 Sum_probs=189.1
Q ss_pred CCCEEEEEecCCeEEEEEccCCceeEEEeccC---------CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhh
Q psy14906 173 VVDIIGVGLSNKKIILHNILTDESLMEFIQTW---------GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI 243 (583)
Q Consensus 173 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 243 (583)
++..|.+++.++.|..+|.++|+.+..+.... ..+.+.-...++ .++.++.++.|..+|..+++.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG--HVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC--EEEEEcCCCEEEEEECCCCCEEEEE
Confidence 46678888888999999999999988876531 233332222334 5778888999999999999887655
Q ss_pred hhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCC-----eeEEEeeCCCCEEEEeeCCCc
Q psy14906 244 KKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPP-----NYIQFYGNSSDNILSAAGDST 318 (583)
Q Consensus 244 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~ 318 (583)
............. +..++.++.++.+..+|.. +++.+.......... ...... +..++.+..++.
T Consensus 130 -~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~ 199 (376)
T 3q7m_A 130 -KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEA----DGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGR 199 (376)
T ss_dssp -ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETT----TCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTTTE
T ss_pred -eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECC----CCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCE
Confidence 2222111112222 3467778889988888543 334443333221110 222222 457888888999
Q ss_pred EEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCccccc
Q psy14906 319 LRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMD 398 (583)
Q Consensus 319 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 398 (583)
+..+|..+++..-.........
T Consensus 200 l~~~d~~tG~~~w~~~~~~~~~---------------------------------------------------------- 221 (376)
T 3q7m_A 200 VSAVLMEQGQMIWQQRISQATG---------------------------------------------------------- 221 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-------------------------------------------------------------
T ss_pred EEEEECCCCcEEEEEecccCCC----------------------------------------------------------
Confidence 9999998876543321100000
Q ss_pred ceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEee
Q psy14906 399 DMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG 478 (583)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 478 (583)
. ............+ .. .+..+++++.++.+..+|..+++....... .....+.. ++..++.++
T Consensus 222 ~--~~~~~~~~~~~~p----~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-------~~~~~~~~--~~~~l~~~~ 284 (376)
T 3q7m_A 222 S--TEIDRLSDVDTTP----VV--VNGVVFALAYNGNLTALDLRSGQIMWKREL-------GSVNDFIV--DGNRIYLVD 284 (376)
T ss_dssp ----------CCCCCC----EE--ETTEEEEECTTSCEEEEETTTCCEEEEECC-------CCEEEEEE--ETTEEEEEE
T ss_pred C--cccccccccCCCc----EE--ECCEEEEEecCcEEEEEECCCCcEEeeccC-------CCCCCceE--ECCEEEEEc
Confidence 0 0000000000000 01 246777788899999999999988766521 22344444 356677788
Q ss_pred cCCcEEEEEccCCCCCceEEeec-c-CCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceee-EEecCC
Q psy14906 479 NDQTVKVWHFKQTGKPPLRSIKL-D-NGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTD-ADFSPD 555 (583)
Q Consensus 479 ~dg~i~iwd~~~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~-l~~s~d 555 (583)
.++.|..+|..++ +.+..... . ........ .+..|++++.+|.++.+|..+++.+.........+.. ... .
T Consensus 285 ~~g~l~~~d~~tG--~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~ 358 (376)
T 3q7m_A 285 QNDRVMALTIDGG--VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--A 358 (376)
T ss_dssp TTCCEEEEETTTC--CEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--E
T ss_pred CCCeEEEEECCCC--cEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--E
Confidence 8999999999988 76665542 1 12222232 3567888999999999999999998777653444333 222 2
Q ss_pred CcEEEEEeCCCeEEEEe
Q psy14906 556 SRWLITASMDCTIRVWD 572 (583)
Q Consensus 556 ~~~l~s~~~d~~i~vw~ 572 (583)
+..|+.++.+|.|..|+
T Consensus 359 ~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 359 DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCEEEEEe
Confidence 45677788999999987
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.51 E-value=1.2e-11 Score=112.76 Aligned_cols=223 Identities=10% Similarity=-0.010 Sum_probs=151.2
Q ss_pred cCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eCeEEEEEcCCeEEEEeccceeeeee
Q psy14906 30 NHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DFFHIYTSANNIIYAWRRGIDIVGTY 107 (583)
Q Consensus 30 ~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~i~vw~~~~~~~~~~ 107 (583)
...+....|+|+...++++-..++.|..||.++++... + .....+.++++ +++++++. ++.|.+||........+
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEE
Confidence 45668889998877776666678999999998876532 2 23467888887 56766665 67899999754333333
Q ss_pred cc-----cCccEEEE--ccCCCEEEEEeCC---------CcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeC
Q psy14906 108 KG-----HTSPVHLI--LPFGPHLISVDEE---------SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPS 171 (583)
Q Consensus 108 ~~-----h~~~v~~i--s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 171 (583)
.. ....+..+ +|+|+++++...+ ..-.||.+.....+..+. ........++|+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-----------~~~~~pngi~~s 157 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-----------DQVDISNGLDWS 157 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-----------EEESBEEEEEEC
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-----------eccccccceEEc
Confidence 21 12335555 8999977654321 234566554322222222 223456789999
Q ss_pred CCCCEEEE-EecCCeEEEEEc--cCCce-----eEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhh
Q psy14906 172 PVVDIIGV-GLSNKKIILHNI--LTDES-----LMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI 243 (583)
Q Consensus 172 ~~~~~l~~-~~~d~~i~iw~~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 243 (583)
||++.|.+ .+.++.|.+|++ .++.. ...+..+......+++.++|. +.++....+.|.+||.++++.+..+
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEEEE
Confidence 99987754 456789999987 45543 222333346788999999997 7777777788999999989888877
Q ss_pred hhccccceEEEEEe-cCCCEEEEEeC
Q psy14906 244 KKAHRKVVTGAHFL-YNEPLLVTSSP 268 (583)
Q Consensus 244 ~~~~~~~v~~~~~~-~~~~~l~s~~~ 268 (583)
..+...+++++|. |+++.|+.++.
T Consensus 237 -~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 -KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred -ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 4566789999998 88876665543
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=2.2e-11 Score=115.82 Aligned_cols=247 Identities=9% Similarity=0.026 Sum_probs=159.0
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCC--eEEEEEccCCCC
Q psy14906 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDN--TLKLWIFDKADG 282 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--~i~~w~~~~~~~ 282 (583)
.....++|+++++ ++++...++.|++||..+++..... .. ..... ++|+++++.|+.+..++ .|.+++.+. .
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~-~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~--~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVH-PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS--G 204 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEE-ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG--T
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEee-cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC--C
Confidence 4678999999998 8888888899999999987765544 22 22333 89999999998888766 676675432 1
Q ss_pred Cc-eeeEEecc-CCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCc
Q psy14906 283 NG-RLLRIREG-HSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPP 360 (583)
Q Consensus 283 ~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (583)
.. ..+..... ....+.+++++|. +..|+.+..++.|+.||..++........
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~-~g~lyv~d~~~~I~~~d~~~~~~~~~~~~------------------------- 258 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDET-EEWLYFVDSNKNFGRFNVKTQEVTLIKQL------------------------- 258 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTT-SSEEEEECTTCEEEEEETTTCCEEEEEEC-------------------------
T ss_pred ceeEEeeeccchhcCCcEEEEEeCC-CCeEEEEECCCcEEEEECCCCCEEEEecc-------------------------
Confidence 11 11212222 4566789999974 44566677788999999876532110000
Q ss_pred cceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCce-EEEEccC-CcEEEEEecCceEEE
Q psy14906 361 VSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPT-CVYITHC-GNFVLIGYSSGHVDR 438 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~-~~~l~~~~~dg~i~i 438 (583)
.. ......... .++++|+ +.++++...++.|+.
T Consensus 259 ------------------------------~~---------------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~ 293 (409)
T 3hrp_A 259 ------------------------------EL---------------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYK 293 (409)
T ss_dssp ------------------------------CC---------------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred ------------------------------cc---------------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEE
Confidence 00 000001123 8999995 556666667888999
Q ss_pred EEcccCccccccCCCCCC---------CcccCeeEEEEeCCCcEEEEee-cCCcEEEEEccCCCCCceEEeec-------
Q psy14906 439 FNIQSGAHRGSYGHDNQP---------GHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQTGKPPLRSIKL------- 501 (583)
Q Consensus 439 ~d~~~~~~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~------- 501 (583)
|+.... ........... ..-.....++++|+|+++++-. .++.|+.|++.++ ........
T Consensus 294 ~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--~v~~~~g~~~~~g~~ 370 (409)
T 3hrp_A 294 ITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--YVSTVAGQVDVASQI 370 (409)
T ss_dssp ECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT--EEEEEEECTTCBSCC
T ss_pred EecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--EEEEEeCCCCCCCcC
Confidence 987543 11111000000 1124578999999999888877 7899999997665 43322222
Q ss_pred --------cCCeeeEEeccCCcEEEEEeCCceEEEEEc
Q psy14906 502 --------DNGISFFRTHQESSMLAVCLDDFTVNIIDI 531 (583)
Q Consensus 502 --------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 531 (583)
-.....++++++|.++++-..++.|+.+++
T Consensus 371 ~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 371 DGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 135788999999888888888888888765
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.50 E-value=2.3e-12 Score=120.17 Aligned_cols=263 Identities=10% Similarity=0.040 Sum_probs=168.4
Q ss_pred cceEEEeeCCCCCEEEEEe--cCCeEEEEEccCCceeEEEe-------ccCCCeEEEEEecCCCCEEEEEcC-----CCc
Q psy14906 163 SCVNVLEPSPVVDIIGVGL--SNKKIILHNILTDESLMEFI-------QTWGPVTALSFRTDGPPMMVSGSN-----TGH 228 (583)
Q Consensus 163 ~~i~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~-----dg~ 228 (583)
.....++++++|+++++.. .++.++||.+.+++. ..+. .+...+..++++++++ ++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCe
Confidence 5788999999999988864 234356666555543 3222 2346799999999987 6555433 578
Q ss_pred EEEEeCCCCeehhhhhh-----ccccceEEEEEecCCCEE-EEEe---CCCeEEEEEccCCCCCceeeEEeccCCCCCe-
Q psy14906 229 LTVWNLEDRQVENQIKK-----AHRKVVTGAHFLYNEPLL-VTSS---PDNTLKLWIFDKADGNGRLLRIREGHSAPPN- 298 (583)
Q Consensus 229 i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l-~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~- 298 (583)
|.+||+.+++.+..+.. .+...+..+++++++..+ ++.. .++.|.+|+++ .++..+.+.+|.....
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~----~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ----TGLAARVLQGYPGIAPE 170 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT----TCCEEEECTTCTTTSCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC----CCCEEEEecCCCccccc
Confidence 99999998886655421 123456899999865444 4444 57889999664 3445555555432111
Q ss_pred eEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEE
Q psy14906 299 YIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIA 378 (583)
Q Consensus 299 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (583)
...+.+ ++..+.+.+.++.+..|.
T Consensus 171 ~~~~~~-~g~~~~~~~~~g~~~~~~------------------------------------------------------- 194 (343)
T 2qe8_A 171 DIDLVI-DGVPVQIGQPDGTVIRPH------------------------------------------------------- 194 (343)
T ss_dssp SCCCEE-TTEECBEECTTSCEECCC-------------------------------------------------------
T ss_pred ccceeE-CCEEEEeccCCCceecee-------------------------------------------------------
Confidence 133343 565666666666655442
Q ss_pred EEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCc-eEEEEEccc---Cc-----cccc
Q psy14906 379 AIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSG-HVDRFNIQS---GA-----HRGS 449 (583)
Q Consensus 379 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~---~~-----~~~~ 449 (583)
..+..++++|+|+.|+++...+ .++.++... +. ....
T Consensus 195 ----------------------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 195 ----------------------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp ----------------------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred ----------------------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 1356799999999888887665 565555421 11 0011
Q ss_pred cCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeec--cCCeeeEEeccCCcEEEEEeCCceE
Q psy14906 450 YGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL--DNGISFFRTHQESSMLAVCLDDFTV 526 (583)
Q Consensus 450 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i 526 (583)
+.. .++......++++++|+++++...++.|.+||..++ +....... ...+..+++.++++++++....+.+
T Consensus 241 ~~~---~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G--~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 241 IER---YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR--AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CEE---EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT--EEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred eEe---cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC--CEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 100 134446678999999999999888999999998444 33333322 2458899999998887777655444
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.49 E-value=1.4e-12 Score=120.73 Aligned_cols=130 Identities=11% Similarity=0.098 Sum_probs=106.8
Q ss_pred ceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCC
Q psy14906 415 PTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKP 494 (583)
Q Consensus 415 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 494 (583)
++.++| |+++|+++ .++.|++||+.+....... ..|...+.++.+.+.. ++++..||.|.+||+..+ .
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-----~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~--~ 157 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-----TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTK--S 157 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-----EECSSCEEEEEECSSE--EEEEETTSEEEEEETTTC--C
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-----ceeecceeeEEecCCC--EEEEECCCCEEEEEccCC--c
Confidence 889999 99999999 8899999999876654444 4666778888776543 888899999999999977 4
Q ss_pred ceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccce--EEee------c---ccccceeeEEecCCCcEEEE
Q psy14906 495 PLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI--IRKL------S---GHMGQLTDADFSPDSRWLIT 561 (583)
Q Consensus 495 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~------~---~h~~~v~~l~~s~d~~~l~s 561 (583)
... ....|++++|||+| +++|..||.+++|+.+.++. ..++ . +|...|.+|.|.+++.+|++
T Consensus 158 ~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 158 TKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 432 45689999999999 78899999999999887775 4555 2 47788999999999999886
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.49 E-value=1.1e-11 Score=113.58 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=152.7
Q ss_pred CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEE
Q psy14906 194 DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLK 273 (583)
Q Consensus 194 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 273 (583)
+..+..+...........|+|+++.++++...++.|..|+.. ++. ..+ ..+...+..++++++|+++++...++.|.
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVL-LDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEE-EESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEE-eCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 344455555557788999999998678888889999999984 442 333 34566789999999999777666667888
Q ss_pred EEEccCCCCCceeeE-Eecc-CCCCCeeEEEeeCCCCEEEE----eeC-------------CCcEEEEEccccccceeec
Q psy14906 274 LWIFDKADGNGRLLR-IREG-HSAPPNYIQFYGNSSDNILS----AAG-------------DSTLRIFNTKSETSNKNLG 334 (583)
Q Consensus 274 ~w~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~ 334 (583)
+|+.+ +....+. ...+ ....+..+++.| +|...++ +.. .+.|..+|..+++.
T Consensus 111 ~~~~~---g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----- 181 (305)
T 3dr2_A 111 RSDAD---GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----- 181 (305)
T ss_dssp EECTT---SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-----
T ss_pred EECCC---CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-----
Confidence 88543 2222221 1111 123466788876 6766665 221 12233333322211
Q ss_pred cchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCC
Q psy14906 335 IASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSK 414 (583)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (583)
.... . ...
T Consensus 182 ---------------------------------------------------------------~~~~----~-----~~~ 189 (305)
T 3dr2_A 182 ---------------------------------------------------------------QRMA----D-----LDH 189 (305)
T ss_dssp ---------------------------------------------------------------EEEE----E-----ESS
T ss_pred ---------------------------------------------------------------EEEe----c-----CCC
Confidence 0000 0 034
Q ss_pred ceEEEEccCCcEEEEEecC------ceEEEEEcccCccc--cccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEE
Q psy14906 415 PTCVYITHCGNFVLIGYSS------GHVDRFNIQSGAHR--GSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVW 486 (583)
Q Consensus 415 i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 486 (583)
...++|+||++.|+++... +.|++|++..+... ..+. .........++++++|++.++. .+ .|.+|
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~----~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~ 263 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA----SVPDGLPDGFCVDRGGWLWSSS-GT-GVCVF 263 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE----CCSSSCCCSEEECTTSCEEECC-SS-EEEEE
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE----ECCCCCCCeEEECCCCCEEEec-CC-cEEEE
Confidence 5689999999988887665 78999998754311 1111 1123445678999999955444 44 49999
Q ss_pred EccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCc
Q psy14906 487 HFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDF 524 (583)
Q Consensus 487 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 524 (583)
+.+ + +.+..+..+..+..++|+|+++.|.+++.++
T Consensus 264 ~~~-g--~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 264 DSD-G--QLLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CTT-S--CEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred CCC-C--CEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 984 4 6677777666799999999999888888764
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.46 E-value=2.8e-12 Score=119.42 Aligned_cols=253 Identities=15% Similarity=0.023 Sum_probs=167.4
Q ss_pred CCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe--eCeEEEEEcCCeEEEEeccceeeeeecccCccEEEEc
Q psy14906 41 RRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS--DFFHIYTSANNIIYAWRRGIDIVGTYKGHTSPVHLIL 118 (583)
Q Consensus 41 ~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~i~vw~~~~~~~~~~~~h~~~v~~is 118 (583)
+.+..+.+.+.++.|..|| .+++.+.....+...+.++.. ++.+.+++.+ |..+|.+++.+..+...........
T Consensus 28 d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 28 AKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp CTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEE
T ss_pred ccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCce
Confidence 4455556666688899999 888887766655555566666 4455555444 8888876655444443332222221
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeE
Q psy14906 119 PFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLM 198 (583)
Q Consensus 119 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~ 198 (583)
-.+..|..++.++.|..+|.. ++...... .....+.++...+++. |.+++.++.|..+|.. ++.+.
T Consensus 105 ~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~-----------~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 105 IFEDILYVTSMDGHLYAINTD-GTEKWRFK-----------TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp EETTEEEEECTTSEEEEECTT-SCEEEEEE-----------CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE
T ss_pred EECCEEEEEecCCEEEEEcCC-CCEEEEEc-----------CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE
Confidence 226677788889999999998 88777665 3344455666777776 5557778899999998 88887
Q ss_pred EEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy14906 199 EFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFD 278 (583)
Q Consensus 199 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 278 (583)
.+......+.++...+++. +..++ +.+..+| .+++..... ......+.++...++|. |..++.++.+..+ +
T Consensus 171 ~~~~~~~~~~~~~~d~~g~--l~v~t--~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~--~ 241 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGT--IYFGS--DKVYAIN-PDGTEKWNF-YAGYWTVTRPAISEDGT-IYVTSLDGHLYAI--N 241 (330)
T ss_dssp EEECSSCCCSCCEECTTCC--EEEES--SSEEEEC-TTSCEEEEE-CCSSCCCSCCEECTTSC-EEEEETTTEEEEE--C
T ss_pred EEecCCCceeeeEEcCCCE--EEEEe--CEEEEEC-CCCcEEEEE-ccCCcceeceEECCCCe-EEEEcCCCeEEEE--C
Confidence 7776666778888878886 45555 7899999 667666555 33445677888888876 4556667777777 4
Q ss_pred CCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEc
Q psy14906 279 KADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324 (583)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 324 (583)
. .+..+.........+..+... .+..|..++.+|.+..+|.
T Consensus 242 ~---~g~~~~~~~~~~~~~~~~~~~--~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 242 P---DGTEKWRFKTGKRIESSPVIG--NTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp T---TSCEEEEEECSSCCCSCCEEC--TTSCEEEECTTCEEEEECT
T ss_pred C---CCCEeEEeeCCCCccccceEc--CCCeEEEecCCCCEEEECC
Confidence 2 233444444333444455554 3457778888888998885
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.46 E-value=1.1e-11 Score=118.96 Aligned_cols=310 Identities=11% Similarity=0.065 Sum_probs=195.2
Q ss_pred EEEEecCCeEEEEEccCCceeEEEec---------------------------------c------CCCeEEEEEec---
Q psy14906 177 IGVGLSNKKIILHNILTDESLMEFIQ---------------------------------T------WGPVTALSFRT--- 214 (583)
Q Consensus 177 l~~~~~d~~i~iw~~~~~~~~~~~~~---------------------------------~------~~~v~~~~~~~--- 214 (583)
+.+|+..|+++|+-+.+++.++.+.- + .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 55678889999998888777766520 0 01122244444
Q ss_pred --CCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEE-e-cCCCEEEEEeC------------------CCeE
Q psy14906 215 --DGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHF-L-YNEPLLVTSSP------------------DNTL 272 (583)
Q Consensus 215 --~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~s~~~------------------d~~i 272 (583)
||++++++...+..|.+.|+.+.++...+.......+..+++ + |+++++++++. ++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 888666666677889999999999777442123356788888 5 99999988852 3567
Q ss_pred EEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcE-EEEEccccccceeeccchhhhhhhhhhcchhc
Q psy14906 273 KLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTL-RIFNTKSETSNKNLGIASANRNNLKRKNRLEK 351 (583)
Q Consensus 273 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
.+.|.+ ..+....+.-.. ....++++| +++++++.+.+..- ...+..+...
T Consensus 178 tvID~~----t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~---------------------- 229 (595)
T 1fwx_A 178 TAVDAD----KWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAE---------------------- 229 (595)
T ss_dssp EEEETT----TTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCS----------------------
T ss_pred EEEECC----CCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccc----------------------
Confidence 777554 345555544322 456788887 79999888875321 0001000000
Q ss_pred cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe
Q psy14906 352 MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY 431 (583)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 431 (583)
...+.+.+..... .+.++|++...
T Consensus 230 --------------------------------~d~v~V~~~~~~~----------------------~~v~~Gk~~~i-- 253 (595)
T 1fwx_A 230 --------------------------------MDHIVVFNIAEIE----------------------KAIAAGDYQEL-- 253 (595)
T ss_dssp --------------------------------EEEEEEEEHHHHH----------------------HHHHHTCSEEE--
T ss_pred --------------------------------cceEEEeecccee----------------------EeccCCCeeEE--
Confidence 0012222211110 12233444333
Q ss_pred cCceEEEEEccc--Ccc-ccccCCCCCCCcccCeeEEEEeCCCcEEEEee-cCCcEEEEEccCCC----------CCceE
Q psy14906 432 SSGHVDRFNIQS--GAH-RGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQTG----------KPPLR 497 (583)
Q Consensus 432 ~dg~i~i~d~~~--~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~----------~~~~~ 497 (583)
+.|.+.|..+ ++. +..+ .-.....++.++|||++++.++ .+.+|.++|+.+.. .....
T Consensus 254 --~~V~VID~~~~~~~~~~~~I------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 254 --NGVKVVDGRKEASSLFTRYI------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp --TTEEEEECSGGGCCSSEEEE------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred --CcEEEEeCcccCCceeEEEE------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 4499999987 444 3333 2234567899999999776554 67899999998541 01234
Q ss_pred EeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccc----------cceEEeecccccc-----eeeEEecCCCcEEEEE
Q psy14906 498 SIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT----------CTIIRKLSGHMGQ-----LTDADFSPDSRWLITA 562 (583)
Q Consensus 498 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~h~~~-----v~~l~~s~d~~~l~s~ 562 (583)
..........++|+|+|....+..-|++|.+||+++ .+.+.++..|-.+ -..+.++|||++|+++
T Consensus 326 ~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 326 EPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp CCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred EcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 555567899999999995555667799999999987 5567777655433 2345678999999987
Q ss_pred eC---CCe----------EEEEeCCCccc
Q psy14906 563 SM---DCT----------IRVWDIPSSQL 578 (583)
Q Consensus 563 ~~---d~~----------i~vw~~~~~~~ 578 (583)
.. |.. -.++|+..+++
T Consensus 406 Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 406 SKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp ESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 53 432 28899965553
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.46 E-value=1.3e-11 Score=115.04 Aligned_cols=264 Identities=13% Similarity=0.057 Sum_probs=161.8
Q ss_pred CCeEEEEEecCCCCEEEEEc--CCCcEEEEeCCCCeehhhh------hhccccceEEEEEecCCCEEEEEeC-----CCe
Q psy14906 205 GPVTALSFRTDGPPMMVSGS--NTGHLTVWNLEDRQVENQI------KKAHRKVVTGAHFLYNEPLLVTSSP-----DNT 271 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~ 271 (583)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+ ...+-..+..++++++++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 6889999999998 777753 2343555555455533 11 1234568999999999876665433 478
Q ss_pred EEEEEccCCCCCceeeEEecc------CCCCCeeEEEeeCCCCEEEEee---CCCcEEEEEccccccceeeccchhhhhh
Q psy14906 272 LKLWIFDKADGNGRLLRIREG------HSAPPNYIQFYGNSSDNILSAA---GDSTLRIFNTKSETSNKNLGIASANRNN 342 (583)
Q Consensus 272 i~~w~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 342 (583)
|.+||++ .++.+..+.. +...+..+++.+.++..+++-. .++.|.+||+.+++..+.+.....
T Consensus 95 i~~~d~~----tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~---- 166 (343)
T 2qe8_A 95 LVAWDTL----NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG---- 166 (343)
T ss_dssp EEEEETT----TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT----
T ss_pred EEEEECC----CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc----
Confidence 8888654 3444444332 2235688999864344445544 578899999887654332210000
Q ss_pred hhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc
Q psy14906 343 LKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH 422 (583)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 422 (583)
.......+.+
T Consensus 167 ----------------------------------------------------------------------~~~~~~~~~~ 176 (343)
T 2qe8_A 167 ----------------------------------------------------------------------IAPEDIDLVI 176 (343)
T ss_dssp ----------------------------------------------------------------------TSCCSCCCEE
T ss_pred ----------------------------------------------------------------------ccccccceeE
Confidence 0000023344
Q ss_pred CCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCC-cEEEEEccCCCC-C------
Q psy14906 423 CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQ-TVKVWHFKQTGK-P------ 494 (583)
Q Consensus 423 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~-~------ 494 (583)
+|..+.+...+|.+..|. ..+..++|+|+++.|+.+..++ .+..++...... .
T Consensus 177 ~g~~~~~~~~~g~~~~~~-------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPH-------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp TTEECBEECTTSCEECCC-------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred CCEEEEeccCCCceecee-------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 566666666666554331 2367899999999888887666 444444321100 0
Q ss_pred --ceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecc-cccceeeEEecCCCcEEEEEeCCCe
Q psy14906 495 --PLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSG-HMGQLTDADFSPDSRWLITASMDCT 567 (583)
Q Consensus 495 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~s~~~d~~ 567 (583)
.+...........++++++|.++++...++.|.+||.++++....... +...+.+++|.++++++++.+..+.
T Consensus 238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 238 GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence 011222234567899999999999988899999999856654333322 2456889999999988887764443
No 231
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=5.1e-13 Score=123.56 Aligned_cols=179 Identities=12% Similarity=0.113 Sum_probs=131.5
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe---------ehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy14906 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ---------VENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w 275 (583)
.+++.+++++... ++++|+.+ .+.+|++.+.+ ........+.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 3789999999998 88888887 56679876433 11111134566 999999 89999998 88999999
Q ss_pred EccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccc
Q psy14906 276 IFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEK 355 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (583)
+++... .......|..++.++.+.++ .++++..||.+.+||+.++.....
T Consensus 112 dv~sl~----~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~~----------------------- 161 (388)
T 1xip_A 112 DLEELS----EFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQL----------------------- 161 (388)
T ss_dssp ESSSTT----CEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE-----------------------
T ss_pred Echhhh----ccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCccccc-----------------------
Confidence 775432 23344556677888877653 388889999999999986643210
Q ss_pred cCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCce
Q psy14906 356 FILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGH 435 (583)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 435 (583)
...++|++|+|+| +++|..||.
T Consensus 162 --------------------------------------------------------~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 162 --------------------------------------------------------AQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp --------------------------------------------------------EESEEEEEECSSE--EEEEETTSC
T ss_pred --------------------------------------------------------cCCceEEEEcCCc--eEEEEcCCc
Confidence 0469999999999 788999999
Q ss_pred EEEEEcccCcc--ccccCCCC-C---CCcccCeeEEEEeCCCcEEEEe
Q psy14906 436 VDRFNIQSGAH--RGSYGHDN-Q---PGHVGGVRGVVSDNLNQIVISG 477 (583)
Q Consensus 436 i~i~d~~~~~~--~~~~~~~~-~---~~h~~~v~~~~~s~~~~~l~s~ 477 (583)
+++|+...++. ...+..+. . .+|...|.++.|.+++.++++-
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99998887764 33442210 0 1478899999999999988864
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.45 E-value=4e-12 Score=118.40 Aligned_cols=300 Identities=14% Similarity=0.008 Sum_probs=188.5
Q ss_pred EeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhcc
Q psy14906 168 LEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAH 247 (583)
Q Consensus 168 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 247 (583)
+....++. |.+++.++.|..|| .+++.+..+..+...+.++...+++. +..++.+ +..+|. +++....+ ...
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~-~~~ 96 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRF-DTK 96 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGS-CC-
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEE-ECC
Confidence 34444554 55567788899999 88888776665545567777777775 5666655 888886 66666555 222
Q ss_pred ccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEcccc
Q psy14906 248 RKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSE 327 (583)
Q Consensus 248 ~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 327 (583)
........+. +..+..++.++.+..++. . ++.......+...+.++...+ ++ .++.++.++.+..+|.. +
T Consensus 97 ~~~~~~~~~~--~~~l~v~t~~~~l~~~d~--~---g~~~~~~~~~~~~~~~~~~~~-~g-~l~vgt~~~~l~~~d~~-g 166 (330)
T 3hxj_A 97 KAIVSDFTIF--EDILYVTSMDGHLYAINT--D---GTEKWRFKTKKAIYATPIVSE-DG-TIYVGSNDNYLYAINPD-G 166 (330)
T ss_dssp ----CCEEEE--TTEEEEECTTSEEEEECT--T---SCEEEEEECSSCCCSCCEECT-TS-CEEEECTTSEEEEECTT-S
T ss_pred CCcccCceEE--CCEEEEEecCCEEEEEcC--C---CCEEEEEcCCCceeeeeEEcC-CC-EEEEEcCCCEEEEECCC-C
Confidence 2223333333 445777778888888843 2 233333333444556666653 34 57777788899999977 4
Q ss_pred ccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccc
Q psy14906 328 TSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERC 407 (583)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 407 (583)
+....+.. .
T Consensus 167 ~~~~~~~~---------------------------------------------------------~-------------- 175 (330)
T 3hxj_A 167 TEKWRFKT---------------------------------------------------------N-------------- 175 (330)
T ss_dssp CEEEEEEC---------------------------------------------------------S--------------
T ss_pred CEeEEEec---------------------------------------------------------C--------------
Confidence 43221100 0
Q ss_pred cccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEE
Q psy14906 408 KQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWH 487 (583)
Q Consensus 408 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 487 (583)
...+.++...+++...+ ++ +.|..+| .+++....+ ......+.++...+++.+ ..++.++.+..+|
T Consensus 176 ----~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~-----~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 176 ----DAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF-----YAGYWTVTRPAISEDGTI-YVTSLDGHLYAIN 241 (330)
T ss_dssp ----SCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE-----CCSSCCCSCCEECTTSCE-EEEETTTEEEEEC
T ss_pred ----CCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE-----ccCCcceeceEECCCCeE-EEEcCCCeEEEEC
Confidence 02345556666776444 44 7799999 777766655 334466888888888764 4456677888887
Q ss_pred ccCCCCCceEEeeccCC-eeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCC
Q psy14906 488 FKQTGKPPLRSIKLDNG-ISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDC 566 (583)
Q Consensus 488 ~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~ 566 (583)
. ++ ..+..+..... +..+.+.+++ .|.+++.+|.+..+|. +++.+..+......+.++...+++++ ..++.+|
T Consensus 242 ~-~g--~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G 315 (330)
T 3hxj_A 242 P-DG--TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNG 315 (330)
T ss_dssp T-TS--CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTS
T ss_pred C-CC--CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCC
Confidence 4 33 45555544433 3445555455 5667888889999996 67777766655667888888888874 5588899
Q ss_pred eEEEEeCCCc
Q psy14906 567 TIRVWDIPSS 576 (583)
Q Consensus 567 ~i~vw~~~~~ 576 (583)
.+++...+..
T Consensus 316 ~~~~~~~~~~ 325 (330)
T 3hxj_A 316 KFYALFNLEH 325 (330)
T ss_dssp CEEEEEC---
T ss_pred eEEEEecccc
Confidence 9998876543
No 233
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=7.2e-11 Score=107.65 Aligned_cols=233 Identities=11% Similarity=0.091 Sum_probs=153.7
Q ss_pred CCcceEEEeeCCCCC-EEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee
Q psy14906 161 WNSCVNVLEPSPVVD-IIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239 (583)
Q Consensus 161 ~~~~i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 239 (583)
...-..+..|++++. ++++...++.|..||..+++. ..+.. ...+.+++++++|+ ++++. ++.|.+||.++++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~-~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM-DAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC-SSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC-CCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcE
Confidence 344566889999654 556666788999999987765 33433 37899999999998 55554 46799999988765
Q ss_pred hhhhh--h-ccccceEEEEEecCCCEEEEEeC---------CCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCC
Q psy14906 240 ENQIK--K-AHRKVVTGAHFLYNEPLLVTSSP---------DNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSS 307 (583)
Q Consensus 240 ~~~~~--~-~~~~~v~~~~~~~~~~~l~s~~~---------d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 307 (583)
..... . .....+..++++|+|+++++... ...-.+|.++.. +.... +..+....+.++|+| ++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~---g~~~~-~~~~~~~pngi~~sp-dg 160 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD---HHVKK-YFDQVDISNGLDWSL-DH 160 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT---SCEEE-EEEEESBEEEEEECT-TS
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC---CCEEE-EeeccccccceEEcC-CC
Confidence 33221 0 11245788999999997765432 234577766643 22222 222233457899997 77
Q ss_pred CEEE-EeeCCCcEEEEEcc--ccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCC
Q psy14906 308 DNIL-SAAGDSTLRIFNTK--SETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGK 384 (583)
Q Consensus 308 ~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (583)
+.|+ +.+.++.|.+|++. ++.....
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~---------------------------------------------------- 188 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNR---------------------------------------------------- 188 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEE----------------------------------------------------
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCc----------------------------------------------------
Confidence 7664 45567889999873 3321100
Q ss_pred ceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeE
Q psy14906 385 NKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRG 464 (583)
Q Consensus 385 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~ 464 (583)
-.+.+... ....+..++++++|++.++....+.|..||..+++.+..+ ..+...+++
T Consensus 189 --~~~~~~~~----------------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i-----~~p~~~~t~ 245 (297)
T 3g4e_A 189 --RSVYKLEK----------------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV-----KLPVDKTTS 245 (297)
T ss_dssp --EEEEECCG----------------GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE-----ECSSSBEEE
T ss_pred --EEEEECCC----------------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE-----ECCCCCceE
Confidence 00000000 0034678999999988888778889999999989888877 455577999
Q ss_pred EEEe-CCCcEEEEee
Q psy14906 465 VVSD-NLNQIVISGG 478 (583)
Q Consensus 465 ~~~s-~~~~~l~s~~ 478 (583)
++|. |+++.|+.++
T Consensus 246 ~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 246 CCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEESGGGCEEEEEE
T ss_pred EEEeCCCCCEEEEEc
Confidence 9998 8877665444
No 234
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.43 E-value=1.1e-11 Score=127.32 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=70.3
Q ss_pred EeCCCcEEE-Eeec---CCcEEEEEccCCCCCc-eEEeeccCCeeeEEeccCCcEEEEEeCCc---eEEEEEccccceEE
Q psy14906 467 SDNLNQIVI-SGGN---DQTVKVWHFKQTGKPP-LRSIKLDNGISFFRTHQESSMLAVCLDDF---TVNIIDIDTCTIIR 538 (583)
Q Consensus 467 ~s~~~~~l~-s~~~---dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~ 538 (583)
+++++..|+ .... .+.|..+++.+..... .....+...+. .|+++++.|+....++ .|++||++.+. ..
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~ 363 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VR 363 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eE
Confidence 455555443 3333 3578899998762111 23334444443 8999999887766543 78999988554 34
Q ss_pred eec-ccccceeeEEecCCCcEEEEEeCC----CeEEEEeCCCccc
Q psy14906 539 KLS-GHMGQLTDADFSPDSRWLITASMD----CTIRVWDIPSSQL 578 (583)
Q Consensus 539 ~~~-~h~~~v~~l~~s~d~~~l~s~~~d----~~i~vw~~~~~~~ 578 (583)
.+. .+...+..+.++++++.|+....+ ++++.||+.+++.
T Consensus 364 ~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 364 EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 443 244567788888888877655444 7899999988764
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=8.1e-11 Score=107.83 Aligned_cols=229 Identities=10% Similarity=0.103 Sum_probs=150.6
Q ss_pred ccceEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccc
Q psy14906 248 RKVVTGAHFLYNEP-LLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 248 ~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
........|+|+++ ++++...++.|..|+.+ +. ...+..+...+..+++.+ +++++++...++.|..|+..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~---g~---~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED---GT---VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT---SC---EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC---CC---EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-
Confidence 34567889999998 56666678889888542 12 233444556788999997 78766665566789999875
Q ss_pred cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccc
Q psy14906 327 ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPER 406 (583)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 406 (583)
++. ..+...
T Consensus 116 g~~-~~~~~~---------------------------------------------------------------------- 124 (305)
T 3dr2_A 116 GQA-HLLVGR---------------------------------------------------------------------- 124 (305)
T ss_dssp SCE-EEEECE----------------------------------------------------------------------
T ss_pred CCE-EEEEec----------------------------------------------------------------------
Confidence 321 111000
Q ss_pred ccccCCCCceEEEEccCCcEEEE----Eec-------------CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC
Q psy14906 407 CKQAKQSKPTCVYITHCGNFVLI----GYS-------------SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN 469 (583)
Q Consensus 407 ~~~~~~~~i~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 469 (583)
........+..++++|+|++.++ |.. .+.|+.+|..+++.... . .......++|+|
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~------~-~~~~p~gl~~sp 197 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM------A-DLDHPNGLAFSP 197 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE------E-EESSEEEEEECT
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE------e-cCCCCcceEEcC
Confidence 00000134677899999988776 332 35688888766654332 2 334567899999
Q ss_pred CCcEEEEeecC------CcEEEEEccCCCCCce--EEee--ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEe
Q psy14906 470 LNQIVISGGND------QTVKVWHFKQTGKPPL--RSIK--LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRK 539 (583)
Q Consensus 470 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 539 (583)
|++.|+.+... +.|.+|++... ... ..+. ....+..+++.++|++.++ ..+ .|.+|+. +++.+..
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~--~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDG--ALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGH 272 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETT--EEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCC--CccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEE
Confidence 99977776654 68999998765 211 1111 1234667999999995444 444 4999998 5777777
Q ss_pred ecccccceeeEEecCCCcEEEEEeCCCeE
Q psy14906 540 LSGHMGQLTDADFSPDSRWLITASMDCTI 568 (583)
Q Consensus 540 ~~~h~~~v~~l~~s~d~~~l~s~~~d~~i 568 (583)
+..+. .+.+++|+++++.|..++.++..
T Consensus 273 ~~~~~-~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 273 IPTPG-TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp EECSS-CCCEEEECTTSCEEEEEETTEEE
T ss_pred EECCC-ceeEEEEeCCCCEEEEEcCCeEE
Confidence 76554 58999999999888887776533
No 236
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.43 E-value=5.8e-12 Score=129.24 Aligned_cols=198 Identities=11% Similarity=0.014 Sum_probs=124.4
Q ss_pred ccCccEEE--EccCCCEEEEEe-----CCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe
Q psy14906 109 GHTSPVHL--ILPFGPHLISVD-----EESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL 181 (583)
Q Consensus 109 ~h~~~v~~--is~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 181 (583)
+|...+.. +||||++||.+. ....|++||+.+|+.+.... .......++|+ |++.|+.++
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~------------~~~k~~~~~Ws-Dg~~l~y~~ 192 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL------------KDVKFSGISWL-GNEGFFYSS 192 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE------------EEEESCCCEEE-TTTEEEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc------------CCceeccEEEe-CCCEEEEEE
Confidence 34445554 499999998532 23579999999998654321 11123568899 999999988
Q ss_pred cCC-------------eEEEEEccCCce--eEEEe--c-cCCCeEEEEEecCCCCEEEEEcC---CCcEEEEeCCCCe-e
Q psy14906 182 SNK-------------KIILHNILTDES--LMEFI--Q-TWGPVTALSFRTDGPPMMVSGSN---TGHLTVWNLEDRQ-V 239 (583)
Q Consensus 182 ~d~-------------~i~iw~~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~-~ 239 (583)
.+. .|++|++.++.. ...+. . +......+.|+|||++++++... +..|.++|+.++. .
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 774 399999987643 22232 3 44457889999999955555443 3579999998763 3
Q ss_pred hhhhhhccccceEEEEEecCCCEEEEEe-CC---CeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeC
Q psy14906 240 ENQIKKAHRKVVTGAHFLYNEPLLVTSS-PD---NTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAG 315 (583)
Q Consensus 240 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 315 (583)
...+ ..+....... +++++..|+..+ .+ +.|..++++. +.......+..|...+. .|++ +++.|+....
T Consensus 273 ~~~l-~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~--~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~ 345 (693)
T 3iuj_A 273 LLTV-QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN--PGPAHWRDLIPERQQVL--TVHS-GSGYLFAEYM 345 (693)
T ss_dssp CEEE-ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS--CCGGGCEEEECCCSSCE--EEEE-ETTEEEEEEE
T ss_pred eEEE-eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC--CCccccEEEecCCCCEE--EEEE-ECCEEEEEEE
Confidence 3334 3455555554 666666555444 33 5677775543 22222334555655555 7887 5777766554
Q ss_pred -CC--cEEEEEccc
Q psy14906 316 -DS--TLRIFNTKS 326 (583)
Q Consensus 316 -dg--~i~iwd~~~ 326 (583)
++ .|++||+..
T Consensus 346 ~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 346 VDATARVEQFDYEG 359 (693)
T ss_dssp ETTEEEEEEECTTS
T ss_pred ECCeeEEEEEECCC
Confidence 43 577787764
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.38 E-value=5.9e-11 Score=113.87 Aligned_cols=318 Identities=9% Similarity=0.027 Sum_probs=194.9
Q ss_pred EEEEeCCCcEEEEEcCCCcEEEEeec-cCCceEEec----------c-------------c----CCcceEEEeeCC---
Q psy14906 124 LISVDEESNVKVWDIKAEETYLELSF-DNDTFKIMG----------K-------------R----WNSCVNVLEPSP--- 172 (583)
Q Consensus 124 l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~----------~-------------~----~~~~i~~~~~s~--- 172 (583)
+.||+..|.++|+-+.+++.+..+.. .+....-.| . + ..+.....++|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 55778889999999999998888752 222111111 0 1 012223344554
Q ss_pred --CCCEEEEEec-CCeEEEEEccCCceeEEEecc-CCCeEEEEE-e-cCCCCEEEEE------------------cCCCc
Q psy14906 173 --VVDIIGVGLS-NKKIILHNILTDESLMEFIQT-WGPVTALSF-R-TDGPPMMVSG------------------SNTGH 228 (583)
Q Consensus 173 --~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~l~s~------------------~~dg~ 228 (583)
||++|.+... ++.|.+.|+.+.+....+.-. ......+++ + |+++ +++++ -.++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCce
Confidence 8888877655 457999999999988855422 245788888 5 8999 55555 23567
Q ss_pred EEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCC-CceeeEEeccCCCCCeeEEEeeCCC
Q psy14906 229 LTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADG-NGRLLRIREGHSAPPNYIQFYGNSS 307 (583)
Q Consensus 229 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 307 (583)
+.+.|.++.+...++..+ +....++++|+|+++++.+.+..--.+ ++.... ....+..+... ....+.+ +|
T Consensus 177 vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~-i~~~~~~~~d~v~V~~~~----~~~~~v~-~G 248 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMT-LPEMTAAEMDHIVVFNIA----EIEKAIA-AG 248 (595)
T ss_dssp EEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSS-HHHHTCCSEEEEEEEEHH----HHHHHHH-HT
T ss_pred EEEEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcc-hhhccccccceEEEeecc----ceeEecc-CC
Confidence 999999999988887432 245667899999999998865411000 000000 00000000000 0001122 34
Q ss_pred CEEEEeeCCCcEEEEEccc--ccc-ceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCC
Q psy14906 308 DNILSAAGDSTLRIFNTKS--ETS-NKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGK 384 (583)
Q Consensus 308 ~~l~~~~~dg~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (583)
++... +.+.+.|..+ ++. ...+..
T Consensus 249 k~~~i----~~V~VID~~~~~~~~~~~~Ipv------------------------------------------------- 275 (595)
T 1fwx_A 249 DYQEL----NGVKVVDGRKEASSLFTRYIPI------------------------------------------------- 275 (595)
T ss_dssp CSEEE----TTEEEEECSGGGCCSSEEEEEE-------------------------------------------------
T ss_pred CeeEE----CcEEEEeCcccCCceeEEEEec-------------------------------------------------
Confidence 33332 4477777765 221 111100
Q ss_pred ceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe-cCceEEEEEcccCcc------------ccccC
Q psy14906 385 NKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY-SSGHVDRFNIQSGAH------------RGSYG 451 (583)
Q Consensus 385 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~~ 451 (583)
. ....++.++|||+++++++ .+.+|.++|+.+.+. ...
T Consensus 276 ---------------------g------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~-- 326 (595)
T 1fwx_A 276 ---------------------A------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-- 326 (595)
T ss_dssp ---------------------E------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--
T ss_pred ---------------------C------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE--
Confidence 0 3577899999999887765 578999999986531 111
Q ss_pred CCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC--------CCCceEEeeccCCe------eeEEeccCCcEE
Q psy14906 452 HDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT--------GKPPLRSIKLDNGI------SFFRTHQESSML 517 (583)
Q Consensus 452 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~v------~~~~~s~~~~~l 517 (583)
..-......++|+|+|...++.-.|++|.+||++.. ..+.+..+..+..+ ..+.++|||++|
T Consensus 327 ----v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 327 ----PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp ----CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred ----cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 133456889999999955566778999999999871 11566666665443 233568999999
Q ss_pred EEEeC---Cce----------EEEEEccccce
Q psy14906 518 AVCLD---DFT----------VNIIDIDTCTI 536 (583)
Q Consensus 518 ~~~~~---dg~----------i~i~d~~~~~~ 536 (583)
++... |+- -.++|+..+++
T Consensus 403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred EEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 98764 321 28899965553
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.35 E-value=7.3e-10 Score=102.49 Aligned_cols=229 Identities=10% Similarity=0.057 Sum_probs=147.5
Q ss_pred cCCCEEEE-EeCCCeEEEEEccCCCCCceeeEEec-------cCCCCCeeEEEeeCCCCEEEEeeCC------CcEEEEE
Q psy14906 258 YNEPLLVT-SSPDNTLKLWIFDKADGNGRLLRIRE-------GHSAPPNYIQFYGNSSDNILSAAGD------STLRIFN 323 (583)
Q Consensus 258 ~~~~~l~s-~~~d~~i~~w~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd 323 (583)
+++++|+. +..++.|.++|+.......+..++++ ........+...| ++ .++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 77776665 55678899997754444556666663 0111345567776 67 66665554 6788888
Q ss_pred ccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeee
Q psy14906 324 TKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLV 403 (583)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 403 (583)
..+.+.+........
T Consensus 171 ~~T~~v~~~~~~~~~----------------------------------------------------------------- 185 (462)
T 2ece_A 171 HYSFEPLGKWEIDRG----------------------------------------------------------------- 185 (462)
T ss_dssp TTTCCEEEECCSBCT-----------------------------------------------------------------
T ss_pred CCCCeEEEEEccCCC-----------------------------------------------------------------
Confidence 887766554321100
Q ss_pred cccccccCCCCceEEEEccCCcEEEEEe-------------------cCceEEEEEcccCccccccCCCCCCCcccCeeE
Q psy14906 404 PERCKQAKQSKPTCVYITHCGNFVLIGY-------------------SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRG 464 (583)
Q Consensus 404 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~ 464 (583)
.......+-|+|+++.+++.. ...+|.+||+.+++...++... ........
T Consensus 186 -------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg---~~g~~P~~ 255 (462)
T 2ece_A 186 -------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG---EENRMALE 255 (462)
T ss_dssp -------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC---TTEEEEEE
T ss_pred -------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC---CCCCccce
Confidence 001233577899999888874 3688999999988777776421 12234455
Q ss_pred EEE--eCCCcEEEEee------cCCcEEEEEccCCCCCceEEee--c-----------------cCCeeeEEeccCCcEE
Q psy14906 465 VVS--DNLNQIVISGG------NDQTVKVWHFKQTGKPPLRSIK--L-----------------DNGISFFRTHQESSML 517 (583)
Q Consensus 465 ~~~--s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~--~-----------------~~~v~~~~~s~~~~~l 517 (583)
+.| +|++++++.++ .+++|.+|..+.+.....+.+. . ......+.+||||++|
T Consensus 256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 555 99999887766 4568887766543111111110 0 2457889999999998
Q ss_pred EEEeC-CceEEEEEccc---cceEEeecccc--------------cceeeEEecCCCcEEEEEe
Q psy14906 518 AVCLD-DFTVNIIDIDT---CTIIRKLSGHM--------------GQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 518 ~~~~~-dg~i~i~d~~~---~~~~~~~~~h~--------------~~v~~l~~s~d~~~l~s~~ 563 (583)
.++.. .+.|.+||+.. .+++..+.... ..-..++++|||++|+++.
T Consensus 336 YVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 336 YLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 88776 58999999853 34554443220 1368899999999999887
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.35 E-value=1.1e-14 Score=136.98 Aligned_cols=259 Identities=10% Similarity=0.008 Sum_probs=141.3
Q ss_pred CCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccc-cce
Q psy14906 173 VVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHR-KVV 251 (583)
Q Consensus 173 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v 251 (583)
++..|++++.|+.|+.||..+|+.+.++.. +.+.+..+..++. ++++++.||.|+.||.++++.+..+ ..+. ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEEC-SCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeee-eccCcccc
Confidence 578899999999999999999999998876 4566666667776 6778889999999999988776544 2221 111
Q ss_pred E-EEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccc
Q psy14906 252 T-GAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSN 330 (583)
Q Consensus 252 ~-~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 330 (583)
. +..+. ++..+++++.++.+..||.. +++.+..+..+. ...++| ++..+++++.|+.|+.||..+++..
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEE
Confidence 0 01111 34467778889999999543 344444444332 234555 6788999999999999999888654
Q ss_pred eeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccccccc
Q psy14906 331 KNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQA 410 (583)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 410 (583)
-.+....
T Consensus 154 W~~~~~~------------------------------------------------------------------------- 160 (369)
T 2hz6_A 154 WNATYFD------------------------------------------------------------------------- 160 (369)
T ss_dssp CEEEEEE-------------------------------------------------------------------------
T ss_pred EeEeccc-------------------------------------------------------------------------
Confidence 3321000
Q ss_pred CCCCceEEEEccC---CcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCee-EEEEeCCCcEEEE--eecCCcEE
Q psy14906 411 KQSKPTCVYITHC---GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVR-GVVSDNLNQIVIS--GGNDQTVK 484 (583)
Q Consensus 411 ~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s--~~~dg~i~ 484 (583)
.....++++ +..+++++.+|.|+.||..+|+.+..+. ...++. ...+++++...+. ...++.++
T Consensus 161 ----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~------~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~ 230 (369)
T 2hz6_A 161 ----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN------YASPVVAFYVWQREGLRKVMHINVAVETLR 230 (369)
T ss_dssp ----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE------CSSCEEEEEECTTSSCEEECCEEEEHHHHH
T ss_pred ----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec------CCCceEEEEEecCCceEeccceeeccccee
Confidence 000111222 1456778889999999999998877652 233443 3344555543210 00134566
Q ss_pred EEEccCCCCC----ceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEcc
Q psy14906 485 VWHFKQTGKP----PLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDID 532 (583)
Q Consensus 485 iwd~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 532 (583)
.+|..++ + .+..+.....+. ...-.+..|++++.+|.++.++..
T Consensus 231 ~ld~~tG--~~~~~~~W~~~~~~~~~--sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 231 YLTFMSG--EVGRITKWKYPFPKETE--AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHH--HHHHHHTSCCCCCCHHH--HHHHSEEEECBEECSSCEECCEEE
T ss_pred eeehhcC--CcccceeeeeccCcccc--ccccccceEEEecccCCEEecCcc
Confidence 6666555 4 333333333221 111134578888889999998876
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.34 E-value=6.8e-10 Score=112.64 Aligned_cols=312 Identities=9% Similarity=0.091 Sum_probs=182.2
Q ss_pred CCEEEEEecCCeEEEEEccCCceeEEEeccCCC----------e-EEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh
Q psy14906 174 VDIIGVGLSNKKIILHNILTDESLMEFIQTWGP----------V-TALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242 (583)
Q Consensus 174 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 242 (583)
+..|.+++.++.|.-+|..+|+.+.++...... + ..+++. +. .++.++.|+.|..+|..+|+.+.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD-KVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CC-EEEEEcCCCEEEEEECCCCCEeee
Confidence 567777888899999999999999988643211 0 122332 33 688888899999999999988776
Q ss_pred hhhccc---cceEE-EEEecCCCEEEEEeC------CCeEEEEEccCCCCCceeeEEeccC-------------------
Q psy14906 243 IKKAHR---KVVTG-AHFLYNEPLLVTSSP------DNTLKLWIFDKADGNGRLLRIREGH------------------- 293 (583)
Q Consensus 243 ~~~~~~---~~v~~-~~~~~~~~~l~s~~~------d~~i~~w~~~~~~~~~~~~~~~~~~------------------- 293 (583)
...... ..+.+ ... .++ .++.+.. ++.|..+|.. +++.+-.+...
T Consensus 143 ~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~----tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDAD----TGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp EECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETT----TCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECC----CCcEEEEecccCCCCCcccccccccccccc
Confidence 622111 11111 111 144 4444432 5778888553 33444333210
Q ss_pred ------------CCCCeeEEEeeCCCCEEEEeeCCCc-------------------EEEEEccccccceeeccchhhhhh
Q psy14906 294 ------------SAPPNYIQFYGNSSDNILSAAGDST-------------------LRIFNTKSETSNKNLGIASANRNN 342 (583)
Q Consensus 294 ------------~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~ 342 (583)
......+++.| +...++.+..++. |..+|..+++.
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~------------- 282 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL------------- 282 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-------------
T ss_pred CCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-------------
Confidence 11112467775 4567777766653 33333333322
Q ss_pred hhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc
Q psy14906 343 LKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH 422 (583)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 422 (583)
+|......... .......+.....+..
T Consensus 283 ----------------------------------------------~W~~~~~~~~~-------wd~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 283 ----------------------------------------------AWHYQVTPGDS-------WDFTATQQITLAELNI 309 (668)
T ss_dssp ----------------------------------------------EEEEESSTTCC-------SCCCCCSCEEEEEEEE
T ss_pred ----------------------------------------------eeEeecCCCcc-------ccccCCCCcEEEEecc
Confidence 22222110000 0000001222233334
Q ss_pred CCc---EEEEEecCceEEEEEcccCccccccCCCCC------C-Cccc------------------------CeeEEEEe
Q psy14906 423 CGN---FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQ------P-GHVG------------------------GVRGVVSD 468 (583)
Q Consensus 423 ~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~-~h~~------------------------~v~~~~~s 468 (583)
+|+ .++.++.+|.++++|..+|+.+........ . .... .-..++++
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~d 389 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN 389 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE
T ss_pred CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceEC
Confidence 665 688899999999999999987733211000 0 0000 01126778
Q ss_pred CCCcEEEEe------------------------------------ecCCcEEEEEccCCCCCceEEeeccCCeeeEEecc
Q psy14906 469 NLNQIVISG------------------------------------GNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQ 512 (583)
Q Consensus 469 ~~~~~l~s~------------------------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 512 (583)
|+..+++.. ..+|.|..||+.++ +.+.......+.....+..
T Consensus 390 p~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG--~~~W~~~~~~~~~~~~~~t 467 (668)
T 1kv9_A 390 PGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ--KAAWKVPYPTHWNGGTLST 467 (668)
T ss_dssp TTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT--EEEEEEEESSSCCCCEEEE
T ss_pred CCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC--cEEEEccCCCCCcCceeEe
Confidence 876655431 13478999999998 8887777766666666667
Q ss_pred CCcEEEEEeCCceEEEEEccccceEEeecccccce-eeEEecCCCc-EEEEEe
Q psy14906 513 ESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQL-TDADFSPDSR-WLITAS 563 (583)
Q Consensus 513 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v-~~l~~s~d~~-~l~s~~ 563 (583)
.+.++++++.|+.++.||.++++.+..++...... .-+.+..+|+ +++.++
T Consensus 468 ~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 88899999999999999999999998887543221 2344556776 455443
No 241
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.33 E-value=1.7e-09 Score=99.92 Aligned_cols=213 Identities=9% Similarity=0.020 Sum_probs=135.8
Q ss_pred eEEEEE-cCCeEEEEeccceeeeeecccCccEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEeccc
Q psy14906 84 FHIYTS-ANNIIYAWRRGIDIVGTYKGHTSPVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKR 160 (583)
Q Consensus 84 ~~~~~~-~~~~i~vw~~~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 160 (583)
.++.++ .++.|..||..+.....+. +...+.++ +++|+++++. . ..|.+||..+++.......... .
T Consensus 62 ~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~-------~ 131 (326)
T 2ghs_A 62 TAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESD-------L 131 (326)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTT-------C
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCC-------C
Confidence 344443 5678999997654344333 24567776 7888877764 3 4499999988875433221100 1
Q ss_pred CCcceEEEeeCCCCCEEEEEec------CCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q psy14906 161 WNSCVNVLEPSPVVDIIGVGLS------NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL 234 (583)
Q Consensus 161 ~~~~i~~~~~s~~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 234 (583)
....+..++++|+|+++++... .+.|..++ +++.. .+..+......++|+|+++.++++.+.++.|.+||+
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~ 208 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 208 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEc
Confidence 1346889999999997765543 23455555 45433 333333567899999999845566666789999998
Q ss_pred C--CC-ee-----hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC
Q psy14906 235 E--DR-QV-----ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS 306 (583)
Q Consensus 235 ~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 306 (583)
. ++ +. ...+ ......+..+++.++|++.++...++.|..|+. .++.+..+..+...+.+++|..++
T Consensus 209 ~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-----~g~~~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 209 DARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-----DGNHIARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp CTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-----TCCEEEEEECSCSBEEEEEEESTT
T ss_pred ccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-----CCCEEEEEECCCCCcEEEEEecCC
Confidence 6 55 32 1112 123345678999999988777766788888843 234555555566678999998326
Q ss_pred CCEEEEeeC
Q psy14906 307 SDNILSAAG 315 (583)
Q Consensus 307 ~~~l~~~~~ 315 (583)
++.|+.++.
T Consensus 283 ~~~L~vt~~ 291 (326)
T 2ghs_A 283 ASRLLVTSA 291 (326)
T ss_dssp SCEEEEEEB
T ss_pred CCEEEEEec
Confidence 666655443
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.31 E-value=1.4e-09 Score=100.63 Aligned_cols=199 Identities=13% Similarity=0.127 Sum_probs=133.9
Q ss_pred cCCCEEEEE-eCCCcEEEEEcCCC----cEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC------CeEE
Q psy14906 119 PFGPHLISV-DEESNVKVWDIKAE----ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN------KKII 187 (583)
Q Consensus 119 ~~~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~ 187 (583)
+++++|+.. ..+++|.+.|+.+. +...+++...-. . +.....-..+..+|+| +++++..+ +.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~-~---~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVK-K---VSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHH-H---HHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcc-c---ccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 677877764 45789999999765 555555200000 0 0112245667888999 77776665 7899
Q ss_pred EEEccCCceeEEEeccCC---CeEEEEEecCCCCEEEEEc-------------------CCCcEEEEeCCCCeehhhhhh
Q psy14906 188 LHNILTDESLMEFIQTWG---PVTALSFRTDGPPMMVSGS-------------------NTGHLTVWNLEDRQVENQIKK 245 (583)
Q Consensus 188 iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~-------------------~dg~i~vwd~~~~~~~~~~~~ 245 (583)
++|.++++.+.++..... .-+.+.|+|+++ .+++.. ...+|.+||+.+++.+.++..
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 999999999998873322 244588899999 777764 367899999999888877743
Q ss_pred c-cccceEEEEE--ecCCCEEEEEe------CCCeEEEEEccCCCCCceeeEEe--ccC----------------CCCCe
Q psy14906 246 A-HRKVVTGAHF--LYNEPLLVTSS------PDNTLKLWIFDKADGNGRLLRIR--EGH----------------SAPPN 298 (583)
Q Consensus 246 ~-~~~~v~~~~~--~~~~~~l~s~~------~d~~i~~w~~~~~~~~~~~~~~~--~~~----------------~~~v~ 298 (583)
+ .......+.| +|++++++.+. .+++|.+|..+. +.......+ ... ...+.
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 3 2234455656 99999887776 466888876653 222222221 110 24578
Q ss_pred eEEEeeCCCCEEEEeeC-CCcEEEEEccc
Q psy14906 299 YIQFYGNSSDNILSAAG-DSTLRIFNTKS 326 (583)
Q Consensus 299 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 326 (583)
.+.+++ |+++|+++.. .+.|.+||+..
T Consensus 325 ~I~lS~-DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 325 DIDISL-DDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CEEECT-TSCEEEEEETTTTEEEEEECSS
T ss_pred EEEECC-CCCEEEEEeCCCCEEEEEEecC
Confidence 899997 7888887765 68999999864
No 243
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.27 E-value=3.7e-09 Score=104.98 Aligned_cols=384 Identities=11% Similarity=0.042 Sum_probs=190.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEE
Q psy14906 121 GPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEF 200 (583)
Q Consensus 121 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 200 (583)
+..|+.++.++.|.-+|..+|+.+.+........... .....-..+++ .+..|++++.++.|..+|.++|+.+.++
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~--~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRP--CCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCC--SSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCccccc--ccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 4455555554459999999999998886432110000 00000011122 3567888889999999999999999887
Q ss_pred eccCC----CeE-EEEEecC---CCCEEEEEc------CCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEE
Q psy14906 201 IQTWG----PVT-ALSFRTD---GPPMMVSGS------NTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTS 266 (583)
Q Consensus 201 ~~~~~----~v~-~~~~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 266 (583)
..... .+. ......+ ++..+++++ .++.|..+|..+++.+... +... ..+.|++......
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~---~~~~---~~~~p~~~~~~~~ 217 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR---PFVE---GHMGRLNGKDSTV 217 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE---ESST---TCEEEETTEEEEE
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec---CCCc---cccccccCccccc
Confidence 64321 111 1111222 321455554 3789999999999887754 1111 1222333333333
Q ss_pred eCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhh
Q psy14906 267 SPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRK 346 (583)
Q Consensus 267 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 346 (583)
..+.....|..+......+......+....-..+++.| +..+++.+..+..- |+..... ..
T Consensus 218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~--~~~~~r~----~~------------ 278 (582)
T 1flg_A 218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGP--WNTWART----AK------------ 278 (582)
T ss_dssp SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSS--SCGGGGS----CT------------
T ss_pred ccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCc--ccCcccc----cC------------
Confidence 21222334422100001111000011111123566776 45566666543211 2110000 00
Q ss_pred cchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEc-cCC-
Q psy14906 347 NRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYIT-HCG- 424 (583)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~- 424 (583)
+ ..+.. . .......+.+.....+.+ +|......... ..........-+... .+|
T Consensus 279 g----------g~~~~---~---d~~~~~~v~AlD~~TG~~-~W~~q~~~~d~-------wd~~~~~~p~l~~~~~~~G~ 334 (582)
T 1flg_A 279 G----------GNPHD---Y---DSLYTSGQVGVDPSSGEV-KWFYQHTPNDA-------WDFSGNNELVLFDYKAKDGK 334 (582)
T ss_dssp T----------SCSTT---C---CCTTCSEEEEECTTTCCE-EEEEESSTTCC-------SCCCCCCCCEEEEEECSSSC
T ss_pred C----------Ccccc---c---CCcccceEEEEeCCCCCE-EEEEeCCCCCc-------ccccCCCCcEEEeeecCCCC
Confidence 0 00000 0 000001112222222222 13221110000 000000112222222 466
Q ss_pred --cEEEEEecCceEEEEEcccCccccccCCCC-C-------------------C---------Cccc-----------Ce
Q psy14906 425 --NFVLIGYSSGHVDRFNIQSGAHRGSYGHDN-Q-------------------P---------GHVG-----------GV 462 (583)
Q Consensus 425 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~-------------------~---------~h~~-----------~v 462 (583)
+.++.++.+|.++++|..+|+.+..+.... . . .... .-
T Consensus 335 ~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w 414 (582)
T 1flg_A 335 IVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNW 414 (582)
T ss_dssp EEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCS
T ss_pred EEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCC
Confidence 378889999999999999998775542210 0 0 0000 00
Q ss_pred eEEEEeCCCcEEEEee---------------------------------cCCcEEEEEccCCCCCceEEeeccCCeeeEE
Q psy14906 463 RGVVSDNLNQIVISGG---------------------------------NDQTVKVWHFKQTGKPPLRSIKLDNGISFFR 509 (583)
Q Consensus 463 ~~~~~s~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 509 (583)
..++++|+..+++... .+|.|..||+.++ +.+.......+...-.
T Consensus 415 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG--~~~W~~~~~~~~~~g~ 492 (582)
T 1flg_A 415 NPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG--KVVWEHKEHLPLWAGV 492 (582)
T ss_dssp SCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC--CEEEEEEESSCCCSCC
T ss_pred CCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC--CEEEEecCCCCCcccc
Confidence 1356677655554432 3578999999998 8877776655544433
Q ss_pred eccCCcEEEEEeCCceEEEEEccccceEEeecccccce-eeEEecCCCcEE
Q psy14906 510 THQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQL-TDADFSPDSRWL 559 (583)
Q Consensus 510 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v-~~l~~s~d~~~l 559 (583)
....+.++++++.|+.++.||.++|+.+.+++.....+ .-+.|..+|+..
T Consensus 493 ~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 44457788889999999999999999998887543322 226677788743
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.26 E-value=5.9e-09 Score=90.68 Aligned_cols=210 Identities=10% Similarity=-0.025 Sum_probs=147.9
Q ss_pred eeeeeeeeee-c--CcccEEEEEeCCCceEEEEee--CCeEEEEecCCcEEEeecCC-CCCCeEEEEeeCeEE-EEE-cC
Q psy14906 20 LRHRALGYVS-N--HLPVVARFIRRRKETLFVTCV--GKAFHVYGCNHFKLLSVSPQ-HEDDITCLSSDFFHI-YTS-AN 91 (583)
Q Consensus 20 ~~~~~~g~~~-~--~~~~~~~~~p~~~~~~i~~~~--~~~i~v~d~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~~~-~~ 91 (583)
..++++..+. + ..|+-+.|+|+ ..++++.+. ++.|.++|+++++.+..+.- .......+++++..+ .+. .+
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~ 85 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC
T ss_pred cCceEEEEEECCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC
Confidence 3466777665 2 23578999876 344444432 68999999999999987642 112223566766433 333 57
Q ss_pred CeEEEEec-cceeeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEee
Q psy14906 92 NIIYAWRR-GIDIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEP 170 (583)
Q Consensus 92 ~~i~vw~~-~~~~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 170 (583)
+.+.++|. ..+.+.++..-...=..+++||+.|+++..+++|.++|.++.+.+.++...... ..-..++.+.|
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~------~p~~~~nele~ 159 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG------HRVIRLNELEY 159 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT------EECCCEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC------cccccceeEEE
Confidence 89999996 456677775321122447889998888777899999999999988888743110 01124677888
Q ss_pred CCCCCEEEEEecCCeEEEEEccCCceeEEEecc-------------CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q psy14906 171 SPVVDIIGVGLSNKKIILHNILTDESLMEFIQT-------------WGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR 237 (583)
Q Consensus 171 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 237 (583)
. ++...+....++.|.+.|..+++.+..+... ....+.|+|+|+++.+++++...+.+.+.++...
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 8 7766666656789999999999999888632 1356899999999878888888899998887643
No 245
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.25 E-value=3e-06 Score=84.81 Aligned_cols=504 Identities=10% Similarity=-0.016 Sum_probs=254.9
Q ss_pred ceEEEEeeCCeEEEEecCCcEEEeecC-CCCCCeEEEEeeC---eEEEEE-cCCeEEEEeccceeeeee-cccCccEEE-
Q psy14906 44 ETLFVTCVGKAFHVYGCNHFKLLSVSP-QHEDDITCLSSDF---FHIYTS-ANNIIYAWRRGIDIVGTY-KGHTSPVHL- 116 (583)
Q Consensus 44 ~~~i~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~~~~~~---~~~~~~-~~~~i~vw~~~~~~~~~~-~~h~~~v~~- 116 (583)
+.+++++..+.|+..|+++......++ ..-..+..+++|. ++..+. .++.|..+++++.....+ .........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 345666789999999998754333332 2234577888864 444443 567899998866433322 211122223
Q ss_pred -EccCCCEEEEE-eCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec--CCeEEEEEcc
Q psy14906 117 -ILPFGPHLISV-DEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS--NKKIILHNIL 192 (583)
Q Consensus 117 -is~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iw~~~ 192 (583)
+.+.++.|+.+ ...+.|.+.+++.......+. ..-.....|++.|....|..... .+.|...++.
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-----------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d 154 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-----------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD 154 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-----------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-----------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence 45555655554 345788888887544322222 22345689999996666655542 5678888876
Q ss_pred CCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeE
Q psy14906 193 TDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTL 272 (583)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 272 (583)
... ...+...-.....|++.+++..+.++-...+.|..+|+..... ..+ .........+++.. +.++++-...+.|
T Consensus 155 G~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~-~~~l~~P~glav~~-~~ly~tD~~~~~I 230 (628)
T 4a0p_A 155 GSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSI 230 (628)
T ss_dssp SCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-EECCSCEEEEEEET-TEEEEEETTTTEE
T ss_pred CCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe-eccCCCceEEEEEC-CEEEEecCCCCEE
Confidence 433 3333334467899999998774556666678899999875433 223 23334556777765 4444444456766
Q ss_pred EEEEccCCCCCceeeEEeccCCCCCee------------------------EEEeeCCCCEEEEeeCCCcEEEEEccccc
Q psy14906 273 KLWIFDKADGNGRLLRIREGHSAPPNY------------------------IQFYGNSSDNILSAAGDSTLRIFNTKSET 328 (583)
Q Consensus 273 ~~w~~~~~~~~~~~~~~~~~~~~~v~~------------------------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 328 (583)
...| ..++... ..+......+.. ++.....+. ..+.+.+|...-.|-.+-.
T Consensus 231 ~~~d--k~tg~~~--~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~-~~C~C~~g~~l~~d~~~C~ 305 (628)
T 4a0p_A 231 ERAN--KTSGQNR--TIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG-FVCGCPAHYSLNADNRTCS 305 (628)
T ss_dssp EEEE--TTTCCSC--EEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTE-EEEECSTTCEECTTSSCEE
T ss_pred EEEE--CCCCCce--EEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCC-eeEEcCCCcEecccCCcCc
Confidence 6664 3222211 111111111222 222211111 1111222211100100000
Q ss_pred cceee---ccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecc
Q psy14906 329 SNKNL---GIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPE 405 (583)
Q Consensus 329 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 405 (583)
....+ ........... .........+..+... ...........+.+..+....+.|..++.............
T Consensus 306 ~~~~~Ll~s~~~~i~~i~l--~~~~~~~~~l~~~~~~-~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~- 381 (628)
T 4a0p_A 306 APTTFLLFSQKSAINRMVI--DEQQSPDIILPIHSLR-NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS- 381 (628)
T ss_dssp CCSSEEEEEETTEEEEECC--CTTCCCCEECCCTTCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---
T ss_pred cccceeeeeccceEEEEec--ccccCceEEEEehhcC-CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcc-
Confidence 00000 00000000000 0000000000011100 01111112222345555555666666655432211111000
Q ss_pred cccccCCCCceEEEEccCCcEEE-EEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeC-CCcEEEEeecCC--
Q psy14906 406 RCKQAKQSKPTCVYITHCGNFVL-IGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDN-LNQIVISGGNDQ-- 481 (583)
Q Consensus 406 ~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg-- 481 (583)
.........+..+++...++.|+ +-+..+.|.+.++. |+....+. .......++|++.| +|.++++-....
T Consensus 382 ~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~----~~~l~~Pr~iavdp~~g~ly~tD~g~~~~ 456 (628)
T 4a0p_A 382 VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVL----KGEQDRPRAVVVNPEKGYMYFTNLQERSP 456 (628)
T ss_dssp ------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEE----ECTTCCEEEEEEETTTTEEEEEEEETTEE
T ss_pred cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEE----eCCCCceeeEEEecCCCeEEEeecCCCCC
Confidence 00000124678999999876555 55567889999886 44333331 23345689999999 555555543333
Q ss_pred cEEEEEccCCCCCceEEeec-cCCeeeEEeccCCcEEEEEeC-CceEEEEEccccceEEeec-ccccceeeEEecCCCcE
Q psy14906 482 TVKVWHFKQTGKPPLRSIKL-DNGISFFRTHQESSMLAVCLD-DFTVNIIDIDTCTIIRKLS-GHMGQLTDADFSPDSRW 558 (583)
Q Consensus 482 ~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~d~~~ 558 (583)
.|...+++.. ........ -...+.+++.++++.|..+.. .+.|..++++... ...+. ........|+... +..
T Consensus 457 ~I~r~~~dG~--~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~l 532 (628)
T 4a0p_A 457 KIERAALDGT--EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWL 532 (628)
T ss_dssp EEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEE
T ss_pred eEEEEeCCCC--CcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEE
Confidence 4555555543 33323322 246789999998777776654 5789999986433 33332 3334567777754 444
Q ss_pred EEEEeCCCeEEEEeCCCccccc
Q psy14906 559 LITASMDCTIRVWDIPSSQLID 580 (583)
Q Consensus 559 l~s~~~d~~i~vw~~~~~~~~~ 580 (583)
..+=.....|...|..+|+...
T Consensus 533 y~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 533 YWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp EEEETTTTEEEEEETTSSSCCE
T ss_pred EEEECCCCeEEEEECcCCCCcE
Confidence 4555556788888887776543
No 246
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.24 E-value=3.1e-06 Score=84.57 Aligned_cols=476 Identities=9% Similarity=-0.005 Sum_probs=238.5
Q ss_pred eEEEEeeCCeEEEEecCCcE-EEeecCCCCCCeEEEEeeC---eEEEEE-cCCeEEEEecccee--eeeecccCccEEEE
Q psy14906 45 TLFVTCVGKAFHVYGCNHFK-LLSVSPQHEDDITCLSSDF---FHIYTS-ANNIIYAWRRGIDI--VGTYKGHTSPVHLI 117 (583)
Q Consensus 45 ~~i~~~~~~~i~v~d~~~~~-~~~~~~~h~~~v~~~~~~~---~~~~~~-~~~~i~vw~~~~~~--~~~~~~h~~~v~~i 117 (583)
.++..+..+.|+..|++... ....+...-....+++++. ++..+. ..+.|..+++++.. ...+...-.....+
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 35667789999999998653 2222223344567888753 444444 45688888876542 22233222334444
Q ss_pred --ccCCCEEEEE-eCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec--CCeEEEEEcc
Q psy14906 118 --LPFGPHLISV-DEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS--NKKIILHNIL 192 (583)
Q Consensus 118 --s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iw~~~ 192 (583)
.+.++.|+.+ ...+.|.+.+++.......+. ..-.....|++.|.+..|..... .+.|...++.
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~-----------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe-----------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 6656655555 446889999987644332222 23345678999997666655543 3577777775
Q ss_pred CCceeEEE-eccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCe
Q psy14906 193 TDESLMEF-IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNT 271 (583)
Q Consensus 193 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 271 (583)
|.....+ ...-.....|++.+++..+.++-...+.|...|+......... .+.......+++..+ ..+++-...+.
T Consensus 159 -G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~-~~~~~~P~gi~~~~~-~ly~td~~~~~ 235 (619)
T 3s94_A 159 -GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFED-ILYWTDWSTHS 235 (619)
T ss_dssp -SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCS
T ss_pred -CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE-eCCCCCceEEEEeCC-EEEEecCCCCE
Confidence 4333333 3334578999999976646666666788999999754433332 222223346666554 34444444566
Q ss_pred EEEEEccCCCCCceeeEEeccCCCCCeeEEEe-------------------------eCCCCEEEEeeCCC---------
Q psy14906 272 LKLWIFDKADGNGRLLRIREGHSAPPNYIQFY-------------------------GNSSDNILSAAGDS--------- 317 (583)
Q Consensus 272 i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------------~~~~~~l~~~~~dg--------- 317 (583)
|...|. .++ +....+.........+.+. .+.....-+.+.+|
T Consensus 236 V~~~d~--~tg--~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~ 311 (619)
T 3s94_A 236 ILACNK--YTG--EGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT 311 (619)
T ss_dssp EEEEES--SSC--CCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSC
T ss_pred EEEEEC--CCC--cccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcc
Confidence 666643 221 1112221111112222221 00000011111111
Q ss_pred ---------------cEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEec
Q psy14906 318 ---------------TLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHT 382 (583)
Q Consensus 318 ---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (583)
.|+..++...... ...+..+... ...........+.+..+..
T Consensus 312 C~~~~~~~Ll~~~~~~i~~i~l~~~~~~----------------------~~~~~~~~l~-~~~~ld~d~~~~~ly~sD~ 368 (619)
T 3s94_A 312 CKDGATELLLLARRTDLRRISLDTPDFT----------------------DIVLQLEDIR-HAIAIDYDPVEGYIYWTDD 368 (619)
T ss_dssp BCSSCSEEEEEEESSCEEEEESSSTTCC----------------------CEECCCSCCS-SEEEEEEETTTTEEEEEET
T ss_pred cCCCCceEEEEEcccceEEEecCCCccc----------------------eeEEeccccC-ccEEEEEEcCCCeEEEEeC
Confidence 1111111111000 0000000000 0111111122344555555
Q ss_pred CCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCc-EEEEEecCceEEEEEcccCccccccCCCCCCCcccC
Q psy14906 383 GKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGN-FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGG 461 (583)
Q Consensus 383 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~ 461 (583)
..+.|..++......... .......+..+++...++ +..+-...+.|.+.++......... ...-..
T Consensus 369 ~~~~I~r~~~~g~~~~~v-------~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~-----~~~l~~ 436 (619)
T 3s94_A 369 EVRAIRRSFIDGSGSQFV-------VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI-----SEDLEE 436 (619)
T ss_dssp TTTEEEEEETTSCSCEEE-------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CTTCCS
T ss_pred CCCeEEEEEcCCCccEEE-------EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEE-----ECCCCC
Confidence 666777776654321111 111114577899997555 4455556788999998754332222 233456
Q ss_pred eeEEEEeCC-CcEEEEe-ecCCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeC-CceEEEEEccccceE
Q psy14906 462 VRGVVSDNL-NQIVISG-GNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLD-DFTVNIIDIDTCTII 537 (583)
Q Consensus 462 v~~~~~s~~-~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~ 537 (583)
..+|++.|. |.++++- +....|...+++.. ....... .-.....+++.+++..|..+.. .+.|..++++.....
T Consensus 437 P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~--~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~ 514 (619)
T 3s94_A 437 PRAIVLDPMVGYMYWTDWGEIPKIERAALDGS--DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR 514 (619)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred eeeEEEEcCCCcEEEecCCCCCEEEEEccCCC--ccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE
Confidence 899999997 4444443 22356666666554 3322222 2346789999987776666654 578999998644332
Q ss_pred EeecccccceeeEEecCCCcEEEEEeCCCeEEEEeCCCc
Q psy14906 538 RKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 538 ~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~ 576 (583)
..+...-.....|+...+ ...++-...+.|..-+..+|
T Consensus 515 ~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 515 VLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 222222233456666433 33333334456766666665
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=8.1e-09 Score=104.76 Aligned_cols=344 Identities=10% Similarity=0.062 Sum_probs=189.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCC-cce-EEEeeCCCCCEEEEEecCCeEEEEEccCCcee
Q psy14906 120 FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWN-SCV-NVLEPSPVVDIIGVGLSNKKIILHNILTDESL 197 (583)
Q Consensus 120 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~i-~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 197 (583)
.+..|+.++.++.|.-+|..+|+.+.+.......... .... ..+ ..+++ ++..|++++.++.|..+|.++|+.+
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKA--RTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGG--GGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCcccc--ccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence 3566777778899999999999999888643211000 0000 000 11122 3567888889999999999999999
Q ss_pred EEEeccC----CCeEEEEEecCCCCEEEEEcC------CCcEEEEeCCCCeehhhhhhc---------------------
Q psy14906 198 MEFIQTW----GPVTALSFRTDGPPMMVSGSN------TGHLTVWNLEDRQVENQIKKA--------------------- 246 (583)
Q Consensus 198 ~~~~~~~----~~v~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~--------------------- 246 (583)
.++.... ..+.+--.-.++ .++.+.. +|.|..+|..+|+.+..+...
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEEECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 8876531 111111011244 4555543 588999999999877655210
Q ss_pred ---------cccceEEEEEecCCCEEEEEeCCCe-------------------EEEEEccCCCCCceeeEEec--cCC--
Q psy14906 247 ---------HRKVVTGAHFLYNEPLLVTSSPDNT-------------------LKLWIFDKADGNGRLLRIRE--GHS-- 294 (583)
Q Consensus 247 ---------~~~~v~~~~~~~~~~~l~s~~~d~~-------------------i~~w~~~~~~~~~~~~~~~~--~~~-- 294 (583)
+......+++.|+..+++.+..++. |..+ |..+ ++.+-.++ .|.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al--D~~t--G~~~W~~~~~~~~~w 294 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI--RPDT--GKLAWHYQVTPGDSW 294 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE--CTTT--CCEEEEEESSTTCCS
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE--cCCC--CceeeEeecCCCccc
Confidence 0111224688888888888876653 6666 5443 34443333 232
Q ss_pred -----CCCeeEEEeeCCCC---EEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeee
Q psy14906 295 -----APPNYIQFYGNSSD---NILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSF 366 (583)
Q Consensus 295 -----~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (583)
.+.....+.. +++ .++.++.+|.++++|..+++.+.........-.. . .+.....++ ..
T Consensus 295 d~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~-----~----~d~~~g~p~---~~ 361 (668)
T 1kv9_A 295 DFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE-----K----VDLATGRPV---EA 361 (668)
T ss_dssp CCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE-----E----ECTTTCCEE---EC
T ss_pred cccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc-----c----cccccCCcc---cc
Confidence 1222222222 454 6889999999999999999876543221100000 0 000000000 00
Q ss_pred ecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEE-----------------
Q psy14906 367 GLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLI----------------- 429 (583)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~----------------- 429 (583)
. .........+.+....+ . ..-..++++|+..++++
T Consensus 362 ~-~~~~~~~~~~~~p~~~G------------------------~--~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 362 P-GVRYEKEPIVMWPSPFG------------------------A--HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp T-TTTCSSSCEEESSCTTC------------------------S--SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCC
T ss_pred c-cccccCCeeEECCCCcc------------------------c--cCCCcceECCCCCEEEEeccccceEeeeeccccc
Confidence 0 00000000011000000 0 01112344444333332
Q ss_pred -------------------EecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccC
Q psy14906 430 -------------------GYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 430 -------------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 490 (583)
...+|.|..||+.+++...... +........+...+.+++.++.|+.++.||.++
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~------~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP------YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc------CCCCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 1235889999999999877652 222333334445677888899999999999999
Q ss_pred CCCCceEEeeccCCe--eeEEeccCCc-EEEEEe
Q psy14906 491 TGKPPLRSIKLDNGI--SFFRTHQESS-MLAVCL 521 (583)
Q Consensus 491 ~~~~~~~~~~~~~~v--~~~~~s~~~~-~l~~~~ 521 (583)
+ +.+..++....+ .-+.+..+|+ +++++.
T Consensus 489 G--~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 489 G--EALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp C--CEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred C--hhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 9 888888776543 2345556777 555554
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.23 E-value=2.3e-08 Score=89.42 Aligned_cols=188 Identities=15% Similarity=0.106 Sum_probs=115.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEE-----EEeeccCCceEEecccCCcceEEEeeCCCCCEEEEE-ecCCeEEEEEccCC
Q psy14906 121 GPHLISVDEESNVKVWDIKAEETY-----LELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVG-LSNKKIILHNILTD 194 (583)
Q Consensus 121 ~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~ 194 (583)
|++|+.+. .+.|+.+++...... ..+. .....+..+++++++..|..+ ..++.|..++....
T Consensus 1 ~~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~ 68 (267)
T 1npe_A 1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLH-----------IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG 68 (267)
T ss_dssp CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEE-----------EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CcEEEEEc-CCeEEEEEecCcccccccceeeec-----------CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC
Confidence 34555555 347888888764321 1111 113467899999976666554 45689999998765
Q ss_pred ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeC---CCe
Q psy14906 195 ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP---DNT 271 (583)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~ 271 (583)
.....+.........+++.+++..++++-...+.|.+++++... ...+..........++++|++..|+.+.. .+.
T Consensus 69 ~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~ 147 (267)
T 1npe_A 69 EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK 147 (267)
T ss_dssp CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE
Confidence 44333333335789999999766466666677899999987432 22221112245789999997666555544 367
Q ss_pred EEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEE-EeeCCCcEEEEEccc
Q psy14906 272 LKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNIL-SAAGDSTLRIFNTKS 326 (583)
Q Consensus 272 i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~ 326 (583)
|..++++.. ..+.+ ..........+++++ ++..|+ +-...+.|..+|+..
T Consensus 148 I~~~~~dg~--~~~~~--~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 148 IETSHMDGT--NRRIL--AQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EEEEETTSC--CCEEE--ECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE
T ss_pred EEEEecCCC--CcEEE--EECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCC
Confidence 777766532 11211 112234568899997 555555 444567888888764
No 249
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.22 E-value=2.2e-11 Score=114.36 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=121.3
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchh
Q psy14906 259 NEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASA 338 (583)
Q Consensus 259 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 338 (583)
++..+++++.|+.+..||.. +++.+..+.. ..+.+..+.. ++..+++++.||.++.||..+++..........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~----tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR----TGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT----TCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECC----CCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 56788999999999999654 4555555554 4455554553 566788888999999999988765433211100
Q ss_pred hhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEE
Q psy14906 339 NRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCV 418 (583)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 418 (583)
.. . . ..++
T Consensus 81 ~~------------------------------------------------------------------~-~--~sp~--- 88 (369)
T 2hz6_A 81 EL------------------------------------------------------------------V-Q--ASPC--- 88 (369)
T ss_dssp HH------------------------------------------------------------------H-T--TCSC---
T ss_pred cc------------------------------------------------------------------c-c--cCce---
Confidence 00 0 0 0011
Q ss_pred EEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEE
Q psy14906 419 YITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRS 498 (583)
Q Consensus 419 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 498 (583)
+. ++..+++++.++.|+.||..+|+....+ ..+. ...++|++..+++++.|+.|+.||..++ +.+..
T Consensus 89 -~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG--~~~W~ 155 (369)
T 2hz6_A 89 -RS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTR--ELRWN 155 (369)
T ss_dssp -C------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSS--SCCCE
T ss_pred -Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCCC----cccccccCCEEEEEecCCEEEEEECCCC--CEEEe
Confidence 01 2446777888999999999999988776 2332 2345678888999999999999999988 66655
Q ss_pred eeccCCeeeEEeccCC---cEEEEEeCCceEEEEEccccceEEeeccccccee-eEEecCCCcEEEE--EeCCCeEEEEe
Q psy14906 499 IKLDNGISFFRTHQES---SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLT-DADFSPDSRWLIT--ASMDCTIRVWD 572 (583)
Q Consensus 499 ~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~-~l~~s~d~~~l~s--~~~d~~i~vw~ 572 (583)
+.... .....+.++. ..+++++.+|.++.||..+|+.+..... ..++. ...+++++...+. ...++.++.+|
T Consensus 156 ~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld 233 (369)
T 2hz6_A 156 ATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVAVETLRYLT 233 (369)
T ss_dssp EEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEEHHHHHHHH
T ss_pred Eeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeecccceeeee
Confidence 54322 2233344432 5677889999999999999999887763 34443 3455666643210 00133455555
Q ss_pred CCCcc
Q psy14906 573 IPSSQ 577 (583)
Q Consensus 573 ~~~~~ 577 (583)
..+|+
T Consensus 234 ~~tG~ 238 (369)
T 2hz6_A 234 FMSGE 238 (369)
T ss_dssp HHHHH
T ss_pred hhcCC
Confidence 55554
No 250
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.22 E-value=3.8e-06 Score=83.96 Aligned_cols=460 Identities=8% Similarity=-0.016 Sum_probs=237.7
Q ss_pred EEEEEcCCeEEEEecccee--eeeecccCccEEEE--ccCCCEEEEEeC-CCcEEEEEcCCCcEEEEeeccCCceEEecc
Q psy14906 85 HIYTSANNIIYAWRRGIDI--VGTYKGHTSPVHLI--LPFGPHLISVDE-ESNVKVWDIKAEETYLELSFDNDTFKIMGK 159 (583)
Q Consensus 85 ~~~~~~~~~i~vw~~~~~~--~~~~~~h~~~v~~i--s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (583)
++.-+..+.|+..++++.. ...+...-.....+ ++.+..|..+.. .+.|..++++.......+..
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~---------- 80 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV---------- 80 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC----------
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe----------
Confidence 3444567788888876531 22222222334444 676666665544 57788888876532122210
Q ss_pred cCCcceEEEeeCCCCCEEEEE-ecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEc-CCCcEEEEeCCCC
Q psy14906 160 RWNSCVNVLEPSPVVDIIGVG-LSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGS-NTGHLTVWNLEDR 237 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~ 237 (583)
........+++.+.++.|..+ ...+.|.+.++........+...-.....|++.|.+..++++-. ..+.|...+++.
T Consensus 81 ~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG- 159 (619)
T 3s94_A 81 SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG- 159 (619)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-
Confidence 223568899999966655554 55689999998744333333344466789999997653445442 246777777763
Q ss_pred eehhhhhhccccceEEEEEecCCCEEEEEeC-CCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCC
Q psy14906 238 QVENQIKKAHRKVVTGAHFLYNEPLLVTSSP-DNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGD 316 (583)
Q Consensus 238 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 316 (583)
.....+....-.....+++++++..|+.+.. .+.|...+++. ...+.+ ..+.......+++.. +...++-...
T Consensus 160 ~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--~~~~~~--~~~~~~~P~gi~~~~--~~ly~td~~~ 233 (619)
T 3s94_A 160 SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAV--VKGSLPHPFALTLFE--DILYWTDWST 233 (619)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--CEEC-----------CCCEEESS--SEEEEECTTT
T ss_pred CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--CccEEE--EeCCCCCceEEEEeC--CEEEEecCCC
Confidence 3222221223456789999997776666643 45666665432 111111 121222345777752 3444444567
Q ss_pred CcEEEEEccccccceeeccchhhhhh------hhhh-cchhc-----cccccC--CC---ccceeeeeccccc-c-----
Q psy14906 317 STLRIFNTKSETSNKNLGIASANRNN------LKRK-NRLEK-----MNEKFI--LP---PVSQFSFGLAREK-D----- 373 (583)
Q Consensus 317 g~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~-----~~~~~~--~~---~~~~~~~~~~~~~-~----- 373 (583)
+.|...|..+++....+......+.. ..+. +...- .-..+. .+ ...+.+....... +
T Consensus 234 ~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~ 313 (619)
T 3s94_A 234 HSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK 313 (619)
T ss_dssp CSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBC
T ss_pred CEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccC
Confidence 88999998877655443221100000 0000 00000 000000 00 0111111110000 0
Q ss_pred --cccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEE-ecCceEEEEEcccCcccccc
Q psy14906 374 --WNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIG-YSSGHVDRFNIQSGAHRGSY 450 (583)
Q Consensus 374 --~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~ 450 (583)
...++... ....++..++............ ..-..+..+++++.+..|+.. ...+.|+.+++........+
T Consensus 314 ~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~-----~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~ 387 (619)
T 3s94_A 314 DGATELLLLA-RRTDLRRISLDTPDFTDIVLQL-----EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV 387 (619)
T ss_dssp SSCSEEEEEE-ESSCEEEEESSSTTCCCEECCC-----SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCCceEEEEE-cccceEEEecCCCccceeEEec-----cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE
Confidence 11222222 2334555555433221111111 111457789999866555554 45788999988754433222
Q ss_pred CCCCCCCcccCeeEEEEeCC-CcEEEEeecCCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeC--CceE
Q psy14906 451 GHDNQPGHVGGVRGVVSDNL-NQIVISGGNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLD--DFTV 526 (583)
Q Consensus 451 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~--dg~i 526 (583)
.........+++.+. +++.++-...+.|.+.+++.. ....... .-.....+++.|....|..... ...|
T Consensus 388 -----~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~--~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I 460 (619)
T 3s94_A 388 -----TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT--MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKI 460 (619)
T ss_dssp -----CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEE
T ss_pred -----ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC--eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEE
Confidence 223356778999874 455556566788999998765 3222222 2357899999997555555443 3577
Q ss_pred EEEEccccceEEeecccccceeeEEecCCCcEEEEEe-CCCeEEEEeCC
Q psy14906 527 NIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITAS-MDCTIRVWDIP 574 (583)
Q Consensus 527 ~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~d~~i~vw~~~ 574 (583)
...+++...........-...+.|++++++..|..+. ..+.|...+++
T Consensus 461 ~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 461 ERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred EEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 7777653332222233345678899998776666554 44678888875
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.22 E-value=6.8e-08 Score=95.84 Aligned_cols=387 Identities=9% Similarity=-0.042 Sum_probs=201.5
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeE
Q psy14906 121 GPHLISVDE-ESNVKVWDI-KAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLM 198 (583)
Q Consensus 121 ~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~ 198 (583)
+..|+.++. ++.|.-+|. .+|+.+.+..................-..++. ++..|++++.++.+..+|.++|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 556666676 789999999 89999988764321000000000000011122 35678888889999999999999998
Q ss_pred EEeccCC----CeEEEEEecCCCCEEEEEcC------CCcEEEEeCCCCeehhhhhhcccc-------------------
Q psy14906 199 EFIQTWG----PVTALSFRTDGPPMMVSGSN------TGHLTVWNLEDRQVENQIKKAHRK------------------- 249 (583)
Q Consensus 199 ~~~~~~~----~v~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~------------------- 249 (583)
++..... .+.+--.-.++ .++.++. ++.|..+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAKD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEECC--EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 8763310 12111111244 4555554 789999999999876544211000
Q ss_pred ------------------ceEEEEEecCCCEEEEEeCC----------------CeEEEEEccCCCCCceeeEEeccCCC
Q psy14906 250 ------------------VVTGAHFLYNEPLLVTSSPD----------------NTLKLWIFDKADGNGRLLRIREGHSA 295 (583)
Q Consensus 250 ------------------~v~~~~~~~~~~~l~s~~~d----------------~~i~~w~~~~~~~~~~~~~~~~~~~~ 295 (583)
....+++.++...++.+..+ +.|..+ +..+++..-......|..
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Al--d~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGR--DLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEE--ETTTCCEEEEEESSTTCS
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEE--ecCCCcEEEEecCCCCcc
Confidence 00235667766666665532 246666 444333222222222211
Q ss_pred ----CCeeEEEee--CCCC---EEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeee
Q psy14906 296 ----PPNYIQFYG--NSSD---NILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSF 366 (583)
Q Consensus 296 ----~v~~~~~~~--~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (583)
.+....... .+++ .++.++.+|.+.++|..+++.+-......... ...
T Consensus 296 ~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~-----------------------w~~ 352 (571)
T 2ad6_A 296 WDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN-----------------------VFK 352 (571)
T ss_dssp SCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC-----------------------SEE
T ss_pred cccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc-----------------------ccc
Confidence 111212211 1563 57788889999999999988765432211000 000
Q ss_pred ecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcc
Q psy14906 367 GLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAH 446 (583)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 446 (583)
..... ....+... +................... ..-..++++|+..++++...+....++.....
T Consensus 353 ~~d~~--~g~p~~~~---------~~~~~~~~~~~~~~P~~~Gg--~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~-- 417 (571)
T 2ad6_A 353 KVDLK--TGTPVRDP---------EFATRMDHKGTNICPSAMGF--HNQGVDSYDPESRTLYAGLNHICMDWEPFMLP-- 417 (571)
T ss_dssp EECTT--TCSEEECG---------GGCCCTTCCEEEESSCTTCS--SCSCBCEEETTTTEEEEEEECEEEEEEECCCC--
T ss_pred ccccc--CCceeccc---------ccCCCCCCCceEECCCCccc--cCCCCceECCCCCEEEEEchhccccccccccc--
Confidence 00000 00000000 00000000000000000000 12246789999999999887766655543321
Q ss_pred ccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceE
Q psy14906 447 RGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTV 526 (583)
Q Consensus 447 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 526 (583)
+..- ...-+.-..+..+|.+. + ...+|.|..||+.++ +.+........+....+...+..+++++.|+.+
T Consensus 418 ---~~~g--~~~~g~~~~~~~~~~~~-~--~~~~g~l~a~D~~tG--~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l 487 (571)
T 2ad6_A 418 ---YRAG--QFFVGATLAMYPGPNGP-T--KKEMGQIRAFDLTTG--KAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYL 487 (571)
T ss_dssp ---CCTT--SCCCCEEEEEEECTTST-T--SCCCEEEEEECTTTC--CEEEEEEESSCCCSBCEEETTTEEEEECTTSEE
T ss_pred ---cccC--CccccccceeccCcccc-C--CCCCCeEEEEECCCC--CEEEEecCCCCccceeEEECCCEEEEEcCCCeE
Confidence 1000 00011111222233221 0 024688999999988 888777766555554455567778889999999
Q ss_pred EEEEccccceEEeecccccc-eeeEEecCCCcEEEE
Q psy14906 527 NIIDIDTCTIIRKLSGHMGQ-LTDADFSPDSRWLIT 561 (583)
Q Consensus 527 ~i~d~~~~~~~~~~~~h~~~-v~~l~~s~d~~~l~s 561 (583)
+.+|.++|+++.+++..... -.-+.+..+|+.++.
T Consensus 488 ~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 488 KALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 99999999999887743321 122445577875543
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.19 E-value=2.6e-08 Score=98.67 Aligned_cols=80 Identities=9% Similarity=-0.062 Sum_probs=56.4
Q ss_pred CCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecccccce-eeEEecCCCcE
Q psy14906 480 DQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQL-TDADFSPDSRW 558 (583)
Q Consensus 480 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v-~~l~~s~d~~~ 558 (583)
+|.|..||+.++ +.+.......+...-.+...+.++++++.|+.++.||.++|+++.+++.....+ .-+.|..+|+.
T Consensus 452 ~G~l~A~D~~tG--~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 452 LGQIKAYNAITG--DYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CEEEEEECTTTC--CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cCeEEEEECCCC--CEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 478999999988 777777655444333344467788889999999999999999998876443222 23556678864
Q ss_pred -EEE
Q psy14906 559 -LIT 561 (583)
Q Consensus 559 -l~s 561 (583)
+++
T Consensus 530 yv~~ 533 (599)
T 1w6s_A 530 YVAI 533 (599)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 443
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.15 E-value=7e-08 Score=86.24 Aligned_cols=243 Identities=9% Similarity=0.064 Sum_probs=145.5
Q ss_pred CcEEEEeCCCCeehh----hhhhccccceEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCceeeEEeccCCCCCeeEE
Q psy14906 227 GHLTVWNLEDRQVEN----QIKKAHRKVVTGAHFLYNEPLLVTSS-PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQ 301 (583)
Q Consensus 227 g~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 301 (583)
+.|+.+++....... .+.......+..++|++++..|+.+. ..+.|..++.+.. . ..............++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--~--~~~~~~~~~~~p~~ia 85 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG--E--PTTIIRQDLGSPEGIA 85 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC--C--CEEEECTTCCCEEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC--C--cEEEEECCCCCccEEE
Confidence 478888887544321 11011234567999999766555544 5678888866422 1 1222222224668899
Q ss_pred EeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEe
Q psy14906 302 FYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIH 381 (583)
Q Consensus 302 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (583)
+.+..+...++-...+.|.++++..... ..+
T Consensus 86 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~------------------------------------------------ 116 (267)
T 1npe_A 86 LDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVL------------------------------------------------ 116 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC-EEE------------------------------------------------
T ss_pred EEecCCeEEEEECCCCEEEEEEcCCCCE-EEE------------------------------------------------
Confidence 9873344444445567888888753211 000
Q ss_pred cCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec---CceEEEEEcccCccccccCCCCCCCc
Q psy14906 382 TGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS---SGHVDRFNIQSGAHRGSYGHDNQPGH 458 (583)
Q Consensus 382 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~h 458 (583)
.. ........++++|++..|+++.. .+.|..+++.... ...+. ...
T Consensus 117 --------~~------------------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~----~~~ 165 (267)
T 1npe_A 117 --------FD------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA----QDN 165 (267)
T ss_dssp --------EC------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE----CTT
T ss_pred --------EE------------------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE----ECC
Confidence 00 00034678999997666655553 4688888875432 22221 122
Q ss_pred ccCeeEEEEeCCCcEE-EEeecCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEe-CCceEEEEEccccce
Q psy14906 459 VGGVRGVVSDNLNQIV-ISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCL-DDFTVNIIDIDTCTI 536 (583)
Q Consensus 459 ~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~ 536 (583)
......+++++++..| ++-...+.|.++|+... ..............++. ++..|.++. ..+.|..+|..+++.
T Consensus 166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~--~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP--GRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE--EEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC--ceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCc
Confidence 3467899999987655 44456678999998764 33333333334456655 345555544 568999999999998
Q ss_pred EEeecccc-cceeeEEecCCCc
Q psy14906 537 IRKLSGHM-GQLTDADFSPDSR 557 (583)
Q Consensus 537 ~~~~~~h~-~~v~~l~~s~d~~ 557 (583)
+..+.... .....+++.|++.
T Consensus 242 ~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 242 MDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEECCSSCCCCCCEEEECSCC
T ss_pred eEEEccccccccceeeecCccC
Confidence 88876433 2478888888865
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.15 E-value=8.4e-09 Score=88.25 Aligned_cols=196 Identities=9% Similarity=-0.022 Sum_probs=138.2
Q ss_pred ceeeeeeeeeee-cCcc--cEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeE--EEEeeCe--EEEEEc
Q psy14906 18 IFLRHRALGYVS-NHLP--VVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDIT--CLSSDFF--HIYTSA 90 (583)
Q Consensus 18 ~~~~~~~~g~~~-~~~~--~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~--~~~~~~~--~~~~~~ 90 (583)
+-.+.+++..+. ...+ +-+.| +++.++++.+.++.|+++|+++++.+..+ -..... .+++++. +++.-.
T Consensus 39 ~~~~~~Vv~~~phd~~~ftqGL~~--~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~ 114 (268)
T 3nok_A 39 VRRVAHIIREYPHATNAFTQGLVF--HQGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWT 114 (268)
T ss_dssp EEEEEEEEEEEECCTTCCEEEEEE--ETTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESS
T ss_pred cccceEEEEEEcCCCccccceEEE--ECCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEcc
Confidence 334456777664 3333 46677 46777777778888999999999888776 222332 3677663 333336
Q ss_pred CCeEEEEec-cceeeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEe
Q psy14906 91 NNIIYAWRR-GIDIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLE 169 (583)
Q Consensus 91 ~~~i~vw~~-~~~~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 169 (583)
++.+.++|. +.+.+.++.--... ..+++|++.|+.+..++.|.++|.++.+.+.++...... ..-..++.+.
T Consensus 115 ~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g------~~v~~lNeLe 187 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTTRYSGEG-WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG------QPVELINELE 187 (268)
T ss_dssp SCEEEEEETTTTEEEEEEECSSCC-CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETT------EECCCEEEEE
T ss_pred CCEEEEEECCcCcEEEEEeCCCce-eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC------cccccccccE
Confidence 889999996 45777777643222 456789999888877899999999999999988754211 1123456677
Q ss_pred eCCCCCEEEEEecCCeEEEEEccCCceeEEEecc-------------CCCeEEEEEecCCCCEEEEEcC
Q psy14906 170 PSPVVDIIGVGLSNKKIILHNILTDESLMEFIQT-------------WGPVTALSFRTDGPPMMVSGSN 225 (583)
Q Consensus 170 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~s~~~ 225 (583)
|. +|+..|....+..|.+.|.++++.+..+... ....+.|+|+|+++.++++|-.
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 77 7776666666889999999999998887632 1356899999998878887754
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.11 E-value=9.5e-08 Score=94.60 Aligned_cols=208 Identities=9% Similarity=-0.022 Sum_probs=120.3
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCE----EEEEecCCeEEEEEccCC
Q psy14906 121 GPHLISVDE-ESNVKVWDI-KAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDI----IGVGLSNKKIILHNILTD 194 (583)
Q Consensus 121 ~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~d~~i~iw~~~~~ 194 (583)
+..|+.++. ++.|.-+|. .+|+.+.+.....................++++|.+.. |++++.|+.+..+|.++|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 556777777 889999999 89999988864321100000000000122445443444 888889999999999999
Q ss_pred ceeEEEeccCC----CeEE-EEEecCCCCEEEEEc------CCCcEEEEeCCCCeehhhhhhcccc--------------
Q psy14906 195 ESLMEFIQTWG----PVTA-LSFRTDGPPMMVSGS------NTGHLTVWNLEDRQVENQIKKAHRK-------------- 249 (583)
Q Consensus 195 ~~~~~~~~~~~----~v~~-~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~-------------- 249 (583)
+.+.+...... .+.+ ... .++ .++.++ .+|.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC--EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 99988764310 1221 111 244 455554 3789999999999876544211100
Q ss_pred ----------------------ce-EEEEEecCCCEEEEEeCCC----------------eEEEEEccCCCCCceeeEEe
Q psy14906 250 ----------------------VV-TGAHFLYNEPLLVTSSPDN----------------TLKLWIFDKADGNGRLLRIR 290 (583)
Q Consensus 250 ----------------------~v-~~~~~~~~~~~l~s~~~d~----------------~i~~w~~~~~~~~~~~~~~~ 290 (583)
.+ ..+++.++..+++.+..++ .|..+ +..+++..-....
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al--d~~TG~~~W~~q~ 296 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR--DADTGEAKFGYQK 296 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE--ETTTCCEEEEEES
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE--eCCCCceeeEeec
Confidence 00 1345667777777766543 56666 4443333333333
Q ss_pred ccCCC----CCee-EEEee--CCC---CEEEEeeCCCcEEEEEccccccceee
Q psy14906 291 EGHSA----PPNY-IQFYG--NSS---DNILSAAGDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 291 ~~~~~----~v~~-~~~~~--~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 333 (583)
..|.. .... +.+.. .++ ..++.++.+|.+.++|..+++.+-..
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 33321 1111 11211 246 46777889999999999999876554
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.09 E-value=4.3e-08 Score=97.30 Aligned_cols=162 Identities=11% Similarity=0.011 Sum_probs=107.7
Q ss_pred EEEEccCCcEEEEEecC----------------ceEEEEEcccCccccccCCCCC-----CCcccCeeEEEEeCCCc---
Q psy14906 417 CVYITHCGNFVLIGYSS----------------GHVDRFNIQSGAHRGSYGHDNQ-----PGHVGGVRGVVSDNLNQ--- 472 (583)
Q Consensus 417 ~~~~s~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~--- 472 (583)
.+++.++...+++++.+ +.|..+|..+|+.+..+..... .....++. +...++|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 35566666666666532 3589999999988776632100 01112221 22234674
Q ss_pred EEEEeecCCcEEEEEccCCCCCceEEeeccC--------------Ce--------------------------eeEEecc
Q psy14906 473 IVISGGNDQTVKVWHFKQTGKPPLRSIKLDN--------------GI--------------------------SFFRTHQ 512 (583)
Q Consensus 473 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------~v--------------------------~~~~~s~ 512 (583)
.++.++.+|.+.++|..++ +.+...+... ++ ..++++|
T Consensus 318 ~v~~~~~~G~l~~lD~~tG--~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 395 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENG--NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP 395 (571)
T ss_dssp EEEEECTTSEEEEEETTTC--CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEeCCCcEEEEEECCCC--CEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC
Confidence 5778888999999999988 7665554321 11 2457888
Q ss_pred CCcEEEEEe-------------------------------------CCceEEEEEccccceEEeecccccceeeEEecCC
Q psy14906 513 ESSMLAVCL-------------------------------------DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPD 555 (583)
Q Consensus 513 ~~~~l~~~~-------------------------------------~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 555 (583)
+..++++.. .+|.|..||..+++.+.++.. ...+....+...
T Consensus 396 ~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~ 474 (571)
T 2ad6_A 396 ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTK 474 (571)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEET
T ss_pred CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEEC
Confidence 877776653 357899999999998877763 333444334445
Q ss_pred CcEEEEEeCCCeEEEEeCCCccccccc
Q psy14906 556 SRWLITASMDCTIRVWDIPSSQLIDCF 582 (583)
Q Consensus 556 ~~~l~s~~~d~~i~vw~~~~~~~~~~~ 582 (583)
+..++.++.|+.|+.||.++|+++-++
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 667777999999999999999988655
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.09 E-value=8.7e-08 Score=82.10 Aligned_cols=196 Identities=11% Similarity=-0.007 Sum_probs=134.3
Q ss_pred eeeeeeeeee-cCcc--cEEEEEeCCCceEEEEeeCC--eEEEEecCCcEEEeecCCCCCCe-EEEEeeCeEEEE--EcC
Q psy14906 20 LRHRALGYVS-NHLP--VVARFIRRRKETLFVTCVGK--AFHVYGCNHFKLLSVSPQHEDDI-TCLSSDFFHIYT--SAN 91 (583)
Q Consensus 20 ~~~~~~g~~~-~~~~--~~~~~~p~~~~~~i~~~~~~--~i~v~d~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~--~~~ 91 (583)
..++++..+. ...+ +-+.|+ + ..++++++..+ .|+++|+++++.+..+.-..... -.+++++..+.. -.+
T Consensus 29 ~~~~vv~~~phd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 29 YDYQIVHSYPHDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEEEEECCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS
T ss_pred cceEEEEEecCCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC
Confidence 3467777654 3333 667786 3 46666666544 89999999999988775433221 246666643333 358
Q ss_pred CeEEEEec-cceeeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEee
Q psy14906 92 NIIYAWRR-GIDIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEP 170 (583)
Q Consensus 92 ~~i~vw~~-~~~~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 170 (583)
+.+.++|. +.+.+.++.-.... ..+++|++.|+....++.|.++|.++.+.+.++...... ..-..++.+.|
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG-~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g------~~~~~lNELe~ 179 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEG-WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG------EELPELNELEW 179 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC-CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT------EECCCEEEEEE
T ss_pred CEEEEEECccCcEEEEEECCCCc-eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC------ccccccceeEE
Confidence 89999997 45667776643222 356788888887766788999999999999888753110 01134456777
Q ss_pred CCCCCEEEEEecCCeEEEEEccCCceeEEEecc------------CCCeEEEEEecCCCCEEEEEcC
Q psy14906 171 SPVVDIIGVGLSNKKIILHNILTDESLMEFIQT------------WGPVTALSFRTDGPPMMVSGSN 225 (583)
Q Consensus 171 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~s~~~ 225 (583)
. +|+..+....+..|.+.|.++++.+..+... ....+.|+|+|+++.++++|-.
T Consensus 180 ~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 180 V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 6 7776666667889999999999998887632 1356899999998856666643
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.08 E-value=3.4e-07 Score=90.94 Aligned_cols=241 Identities=11% Similarity=0.030 Sum_probs=127.1
Q ss_pred eeCeEEEEEcCCeEEEEec-cceeeeeecccCcc--------E-EEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeecc
Q psy14906 81 SDFFHIYTSANNIIYAWRR-GIDIVGTYKGHTSP--------V-HLILPFGPHLISVDEESNVKVWDIKAEETYLELSFD 150 (583)
Q Consensus 81 ~~~~~~~~~~~~~i~vw~~-~~~~~~~~~~h~~~--------v-~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 150 (583)
.++++.+++.++.|.-+|. +++.+-.+...... + ..+...+..|+.++.|+.|.-+|.++|+.+.+....
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4666666666455777785 45554444332211 0 111235667888888999999999999999887643
Q ss_pred CCceEEecccCCcceEEEeeCCCCC-EEEEEec------CCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEE
Q psy14906 151 NDTFKIMGKRWNSCVNVLEPSPVVD-IIGVGLS------NKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSG 223 (583)
Q Consensus 151 ~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 223 (583)
...... .....++.. .=..+++ .++++.. ++.|..+|.++|+.+....... +.+.|++. .....
T Consensus 147 ~~~~~~--~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~-----~~~~p~~~-~~~~~ 217 (582)
T 1flg_A 147 DHGAGY--TMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVE-----GHMGRLNG-KDSTV 217 (582)
T ss_dssp CGGGTC--BCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESST-----TCEEEETT-EEEEE
T ss_pred CCCcCc--ccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCc-----cccccccC-ccccc
Confidence 110000 000111110 0001233 5656543 7899999999999998754321 12234333 33333
Q ss_pred cCCCcEEEEeCC----CCeehhhhhhccccceEEEEEecCCCEEEEEeC--------------------C----CeEEEE
Q psy14906 224 SNTGHLTVWNLE----DRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP--------------------D----NTLKLW 275 (583)
Q Consensus 224 ~~dg~i~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--------------------d----~~i~~w 275 (583)
..+.....|..+ +++...-. .+....-..+++.|+..+++.+.. | +.|..+
T Consensus 218 ~g~~g~~~w~~~~~~~~g~~~~~~-~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~Al 296 (582)
T 1flg_A 218 TGDVKAPSWPDDRNSPTGKVESWS-HGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGV 296 (582)
T ss_dssp SSCTTCTTSCBCTTSTTSBCGGGG-GCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEE
T ss_pred ccccccccCCCccccccccccccc-cCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEE
Confidence 222233444432 23321111 111122235677777777776553 2 466666
Q ss_pred EccCCCCCceeeEEeccCCC----CCee-EEEee--CCC---CEEEEeeCCCcEEEEEccccccceee
Q psy14906 276 IFDKADGNGRLLRIREGHSA----PPNY-IQFYG--NSS---DNILSAAGDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~----~v~~-~~~~~--~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 333 (583)
|..+++..-......|.. .+.. +.+.. .++ ..++.++.+|.++++|..+++.+-..
T Consensus 297 --D~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 362 (582)
T 1flg_A 297 --DPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF 362 (582)
T ss_dssp --CTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred --eCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence 444333333232333321 1111 22221 256 37888999999999999999876554
No 259
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=7.7e-08 Score=83.69 Aligned_cols=160 Identities=8% Similarity=-0.102 Sum_probs=108.0
Q ss_pred ceEEEeeCCCCCEEEEEec--CCeEEEEEccCCceeEEEeccC-CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeeh
Q psy14906 164 CVNVLEPSPVVDIIGVGLS--NKKIILHNILTDESLMEFIQTW-GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVE 240 (583)
Q Consensus 164 ~i~~~~~s~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 240 (583)
....++|++|+.+.++.+. ++.|.++|+.+++.+..+.... .....+++. +..+.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4678999998755554433 5799999999999998876332 223345554 4436666677899999999999998
Q ss_pred hhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccC--C---CCCeeEEEeeCCCCEEEEeeC
Q psy14906 241 NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGH--S---APPNYIQFYGNSSDNILSAAG 315 (583)
Q Consensus 241 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~l~~~~~ 315 (583)
.++..+ ... ...+++||+.++++..++.+.++| .. ..+....+.-. . ..++.+.|. ++...+....
T Consensus 100 ~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD--~~--t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~ 170 (266)
T 2iwa_A 100 KNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEID--PH--TFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ 170 (266)
T ss_dssp EEEECC-SSS--CCEEEECSSSEEEECSSSEEEEEC--TT--TCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT
T ss_pred EEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEE--CC--CCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCC
Confidence 888433 122 234667888777777788888884 43 33444443321 1 235677876 5654445546
Q ss_pred CCcEEEEEccccccceeec
Q psy14906 316 DSTLRIFNTKSETSNKNLG 334 (583)
Q Consensus 316 dg~i~iwd~~~~~~~~~~~ 334 (583)
++.|.+.|..+++....+.
T Consensus 171 ~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp SSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEE
Confidence 7899999999998777664
No 260
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.03 E-value=5.5e-05 Score=80.98 Aligned_cols=471 Identities=11% Similarity=0.069 Sum_probs=235.7
Q ss_pred CCeEEEEecCCcEEEeecC-CCCCCeEEEEeeCeEEEEEcCCeEEEEeccceeeeee--cccCccEEEE--c--cC----
Q psy14906 52 GKAFHVYGCNHFKLLSVSP-QHEDDITCLSSDFFHIYTSANNIIYAWRRGIDIVGTY--KGHTSPVHLI--L--PF---- 120 (583)
Q Consensus 52 ~~~i~v~d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~--~~h~~~v~~i--s--~~---- 120 (583)
.+.|++.+.+....+.... +....|.+.+.++..++.+.++.+.++.++...+... ..-...|.|+ . ++
T Consensus 491 ~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~ 570 (1158)
T 3ei3_A 491 SASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL 570 (1158)
T ss_dssp SSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence 4456777766555554444 3455687777755444444578888887642111111 1235678887 2 22
Q ss_pred CCEEEEEeC-CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEc--cCCcee
Q psy14906 121 GPHLISVDE-ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNI--LTDESL 197 (583)
Q Consensus 121 ~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~--~~~~~~ 197 (583)
++++|.|.. |++++|+++.+.+.+....+... .....+.-+.+ ....+|.+|..||.+.-+.+ .+|+..
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-------~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~ 642 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGE-------IIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLS 642 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-------CCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-------CCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence 479999996 99999999998777765543210 01122333333 23457889999998766555 345443
Q ss_pred EE---EeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccce-EEEEEecC--CCEEEEEeCCCe
Q psy14906 198 ME---FIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVV-TGAHFLYN--EPLLVTSSPDNT 271 (583)
Q Consensus 198 ~~---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-~~~~~~~~--~~~l~s~~~d~~ 271 (583)
.. +-+ ..++.-..|...+..-+++.+ +.-..++.-+ ++....- -....+ ....|+.. ..-++..+ ++.
T Consensus 643 d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~--l~~~~v~~~~~F~se~~~~g~v~~~-~~~ 716 (1158)
T 3ei3_A 643 DRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSN--VNLKEVNYMCPLNSDGYPDSLALAN-NST 716 (1158)
T ss_dssp EEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEE--BSSSCCCEEEEECCSSSTTEEEEEC-SSC
T ss_pred cceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEec--cChHHhceEeccCcccCCCcEEEEc-CCc
Confidence 22 223 356655556555543344444 3344444433 3322111 111223 23345332 12344443 456
Q ss_pred EEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhc
Q psy14906 272 LKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEK 351 (583)
Q Consensus 272 i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
++|..++.. ..-.++.+.- ...+..++++|. .+.++.+..+. ..++...... ..... ..............
T Consensus 717 LrI~~i~~~--~~~~~~~ipL-~~Tprri~y~~~-~~~~~v~~~~~--~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 717 LTIGTIDEI--QKLHIRTVPL-YESPRKICYQEV-SQCFGVLSSRI--EVQDTSGGTT--ALRPS-ASTQALSSSVSSSK 787 (1158)
T ss_dssp EEEEEECCS--SSEEEEEEEC-SSEEEEEEEEGG-GTEEEEEEEEE--EEECSSSSEE--ESSCC-HHHHCSEEEECCCC
T ss_pred eEEEEeccc--CCeeEEEEeC-CCCceEEEEcCC-CCEEEEEEEec--cccccccccc--hhhhh-hhhhhhhhcccccc
Confidence 999977543 2223333332 356789999984 55555443322 1222211000 00000 00000000000000
Q ss_pred cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEE---EccC-CcEE
Q psy14906 352 MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVY---ITHC-GNFV 427 (583)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~-~~~l 427 (583)
........+... +... ...+.+++.|..+......... .....+.+++ |..+ ..++
T Consensus 788 ~~~~~~~~~~~~--~g~~------------~~~s~i~lidp~t~~~i~~~~l------~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 788 LFSSSTAPHETS--FGEE------------VEVHNLLIIDQHTFEVLHAHQF------LQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp CC------------CCCE------------EEEEEEEEEETTTCCEEEEEEC------CTTEEEEEEEEECCTTCCCCEE
T ss_pred cccccccCchhh--cCCc------------eeeEEEEEEeCCCCeEEEEEeC------CCCcceEEEEEEEEccCCCEEE
Confidence 000000000000 0000 0122345555443322111000 0012233433 3322 4688
Q ss_pred EEEe----------cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceE
Q psy14906 428 LIGY----------SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLR 497 (583)
Q Consensus 428 ~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 497 (583)
++|+ ..|.|++|++..++...... ....+.|++++-- +|++++.. ...|++|++... +.++
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~----~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~--~~L~ 918 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE----KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTE--KELR 918 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE----EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTT--SCEE
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE----EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCC--ceEE
Confidence 8887 35899999998543332221 2456788888754 45555544 368999999876 4444
Q ss_pred -EeeccCCeeeEEeccCCcEEEEEeCCceEEEEEcc--ccceEEee-cccccceeeEEecCCCcEEEEEeCCCeEEEEeC
Q psy14906 498 -SIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDID--TCTIIRKL-SGHMGQLTDADFSPDSRWLITASMDCTIRVWDI 573 (583)
Q Consensus 498 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~-~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~ 573 (583)
.......+..+.....+.++++|+.-..+.++..+ .++..... ..+...++++.|-.++ .++.+..+|.+.+...
T Consensus 919 ~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 919 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQK 997 (1158)
T ss_dssp EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEE
T ss_pred EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEec
Confidence 11122234444444568899999988888776554 33333222 2245568888886554 5677899999999877
Q ss_pred CC
Q psy14906 574 PS 575 (583)
Q Consensus 574 ~~ 575 (583)
..
T Consensus 998 ~~ 999 (1158)
T 3ei3_A 998 DS 999 (1158)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 261
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.03 E-value=2.9e-05 Score=77.68 Aligned_cols=452 Identities=8% Similarity=-0.031 Sum_probs=239.1
Q ss_pred cccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEee---CeEEEEE-cCCeEEEEeccceeeeee
Q psy14906 32 LPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSD---FFHIYTS-ANNIIYAWRRGIDIVGTY 107 (583)
Q Consensus 32 ~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~-~~~~i~vw~~~~~~~~~~ 107 (583)
.|..+.|.+.....+++-...+.|..++++.......+.........+|+| +++..+. ..+.|.+.++++.....+
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l 117 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL 117 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence 467888988777766665578899999987643333333222345567775 3454444 457899999876544333
Q ss_pred c-ccCccEEEE--ccCCCEEEEEeC--CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe-
Q psy14906 108 K-GHTSPVHLI--LPFGPHLISVDE--ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL- 181 (583)
Q Consensus 108 ~-~h~~~v~~i--s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 181 (583)
. ..-..-..| .|...+|..... .+.|...+++..... .+. ..-.....|+++++++.|..+.
T Consensus 118 ~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~-----------~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 118 VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLV-----------PNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE-----------CSCSSEEEEEEETTTTEEEEEET
T ss_pred EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEE-----------CCCCCcceEEEccccCEEEEEEC
Confidence 2 222223444 665556665542 467777777654332 222 2345678999999877776664
Q ss_pred cCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhh----------ccc---
Q psy14906 182 SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKK----------AHR--- 248 (583)
Q Consensus 182 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------~~~--- 248 (583)
..+.|...|+..... ..+.........+++.. +. ++++-...+.|...|..+++....+.. .|.
T Consensus 186 ~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~-ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q 262 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DY-IYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQ 262 (628)
T ss_dssp TTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TE-EEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGS
T ss_pred CCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CE-EEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeeccc
Confidence 457899999865433 33443334567888865 33 666666678888888766542221100 000
Q ss_pred ----------cceEEEEEe-c----------------CC-------CEEEEEeCCCeEEEEEccCCCCCceeeEEec-cC
Q psy14906 249 ----------KVVTGAHFL-Y----------------NE-------PLLVTSSPDNTLKLWIFDKADGNGRLLRIRE-GH 293 (583)
Q Consensus 249 ----------~~v~~~~~~-~----------------~~-------~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~-~~ 293 (583)
+....++.. | |+ .+|+.+. ...|+-..++... ... ..+. ..
T Consensus 263 ~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~-~~~--~~l~~~~ 338 (628)
T 4a0p_A 263 SGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQ-SPD--IILPIHS 338 (628)
T ss_dssp CCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTC-CCC--EECCCTT
T ss_pred ccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEeccccc-Cce--EEEEehh
Confidence 001011111 1 11 1222221 2233333222110 001 1111 11
Q ss_pred CCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccc
Q psy14906 294 SAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKD 373 (583)
Q Consensus 294 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (583)
-..+..+.|.+.++..+++=...+.|+.+++........+.... ........ +...+....
T Consensus 339 ~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~---------------~~~~~~~~----p~glAvD~~ 399 (628)
T 4a0p_A 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSV---------------PSQNLEIQ----PYDLSIDIY 399 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------------------CCC----EEEEEEETT
T ss_pred cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEccc---------------ccccccCC----cceEEeecc
Confidence 23467788887444444444456778777765432211110000 00000011 112222222
Q ss_pred cccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe-cCc--eEEEEEcccCcccccc
Q psy14906 374 WNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY-SSG--HVDRFNIQSGAHRGSY 450 (583)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~ 450 (583)
..++..+....+.|.+.+.......... .........+++.|...+|+... ... .|...++.........
T Consensus 400 ~~nLY~td~~~~~I~v~~~~G~~~~~l~-------~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~ 472 (628)
T 4a0p_A 400 SRYIYWTCEATNVINVTRLDGRSVGVVL-------KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF 472 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCEEEEEE-------ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE
T ss_pred CCeEEEEcCCCCEEEEEECCCCeEEEEE-------eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE
Confidence 3456666677778888777653221111 11125688999999544444433 222 6777776533332222
Q ss_pred CCCCCCCcccCeeEEEEeCCCcEEEEee-cCCcEEEEEccCCCCCceEEee--ccCCeeeEEeccCCcEEEEEeCCceEE
Q psy14906 451 GHDNQPGHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQTGKPPLRSIK--LDNGISFFRTHQESSMLAVCLDDFTVN 527 (583)
Q Consensus 451 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~ 527 (583)
...-...+.|+++++++.|+.+. ..+.|...+++.. . .+.+. .......+++.. +.++.+-...+.|.
T Consensus 473 -----~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~--~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~ 543 (628)
T 4a0p_A 473 -----FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA--N-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIE 543 (628)
T ss_dssp -----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--S-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred -----eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC--c-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEE
Confidence 22345678999999876666554 4578999998664 2 23332 223456677654 44444444567888
Q ss_pred EEEccccceE
Q psy14906 528 IIDIDTCTII 537 (583)
Q Consensus 528 i~d~~~~~~~ 537 (583)
..|..+|+..
T Consensus 544 ~~~k~~G~~~ 553 (628)
T 4a0p_A 544 KIDMTGREGR 553 (628)
T ss_dssp EEETTSSSCC
T ss_pred EEECcCCCCc
Confidence 8887766543
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.02 E-value=7.1e-08 Score=82.67 Aligned_cols=131 Identities=14% Similarity=0.181 Sum_probs=94.1
Q ss_pred CCcEEEE-EecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeec
Q psy14906 423 CGNFVLI-GYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL 501 (583)
Q Consensus 423 ~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 501 (583)
+++.|.. ...++.+.+||..+.+.+.++... + ....+++|++.|+.+..++.|.++|..+. +.+..+..
T Consensus 95 ~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~---~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~--~v~~~I~V 164 (262)
T 3nol_A 95 WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD---G-----EGWGLTHNDQYLIMSDGTPVLRFLDPESL--TPVRTITV 164 (262)
T ss_dssp ETTEEEEEESSSSEEEEEETTTCCEEEEEECS---S-----CCCCEEECSSCEEECCSSSEEEEECTTTC--SEEEEEEC
T ss_pred eCCEEEEEEeeCCEEEEEECccCcEEEEEECC---C-----CceEEecCCCEEEEECCCCeEEEEcCCCC--eEEEEEEe
Confidence 3444444 445889999999999999888532 1 22333457777777766788999999988 77777654
Q ss_pred c------CCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeeccc------------ccceeeEEecCCCcEEEEEe
Q psy14906 502 D------NGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGH------------MGQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 502 ~------~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h------------~~~v~~l~~s~d~~~l~s~~ 563 (583)
. ..++.+.|. +|+..|..-.++.|.+.|.++++.+..+... ....+.|+|+|+++.|...+
T Consensus 165 ~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 165 TAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 3 234457776 7876666667889999999999998776532 13458899999888877666
Q ss_pred C
Q psy14906 564 M 564 (583)
Q Consensus 564 ~ 564 (583)
.
T Consensus 244 K 244 (262)
T 3nol_A 244 K 244 (262)
T ss_dssp T
T ss_pred C
Confidence 4
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.99 E-value=3.9e-07 Score=77.46 Aligned_cols=195 Identities=9% Similarity=-0.002 Sum_probs=132.3
Q ss_pred eeeeeeeee---cCcccEEEEEeCCCceEEEEeeC--CeEEEEecCCcEEEeecCCCCCCe-EEEEeeCe-EE-EEEcCC
Q psy14906 21 RHRALGYVS---NHLPVVARFIRRRKETLFVTCVG--KAFHVYGCNHFKLLSVSPQHEDDI-TCLSSDFF-HI-YTSANN 92 (583)
Q Consensus 21 ~~~~~g~~~---~~~~~~~~~~p~~~~~~i~~~~~--~~i~v~d~~~~~~~~~~~~h~~~v-~~~~~~~~-~~-~~~~~~ 92 (583)
.++++..+. ....+-+.|+ +..++..++.. +.|+++|+++++.+....-..... -.+++++. +. +.-.++
T Consensus 8 ~~~v~~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 8 GYRVVKRYPHDTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp CEEEEEEEECCTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSS
T ss_pred ceEEEEEcCCCCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCC
Confidence 356666553 2233466785 35655555543 589999999999988765332221 34566553 33 333688
Q ss_pred eEEEEec-cceeeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeC
Q psy14906 93 IIYAWRR-GIDIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPS 171 (583)
Q Consensus 93 ~i~vw~~-~~~~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 171 (583)
.+.++|. +.+.+.++.-.... ..+.++++.|+.+..++.|.++|.++.+.+.++....... .-..++.+.+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~G-wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~------~~~~lNeLe~~ 158 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEG-WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR------PLDNLNELEWV 158 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCC-CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE------ECCCEEEEEEE
T ss_pred EEEEEECCcCcEEEEEeCCCCc-eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc------ccccceeeEEe
Confidence 9999997 45777777643332 4667888888877778999999999999998887532111 11345566665
Q ss_pred CCCCEEEEEecCCeEEEEEccCCceeEEEecc-------------CCCeEEEEEecCCCCEEEEEcC
Q psy14906 172 PVVDIIGVGLSNKKIILHNILTDESLMEFIQT-------------WGPVTALSFRTDGPPMMVSGSN 225 (583)
Q Consensus 172 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~s~~~ 225 (583)
+|+..|....+..|.+.|.++++.+..+... ....+.|+++|+++.++++|-.
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 6776666666789999999999998887622 1356899999998867777754
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.97 E-value=6.3e-07 Score=82.52 Aligned_cols=154 Identities=9% Similarity=0.044 Sum_probs=98.2
Q ss_pred CceEEEEcc-CCcEEEEEec-----------------CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEE
Q psy14906 414 KPTCVYITH-CGNFVLIGYS-----------------SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVI 475 (583)
Q Consensus 414 ~i~~~~~s~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 475 (583)
.+..+++.+ +|++.++... +|.|..||..+++..... ........++++|+++.|+
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~------~~~~~p~gia~~~dg~~ly 200 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL------KELHVPGGAEVSADSSFVL 200 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE------EEESCCCEEEECTTSSEEE
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec------cCCccCcceEECCCCCEEE
Confidence 356677888 7765555322 367888887666543221 1123456799999998655
Q ss_pred Ee-ecCCcEEEEEccCCCCCceEEe-eccCCeeeEEeccCCcEEEEEeC----------CceEEEEEccccceEEeeccc
Q psy14906 476 SG-GNDQTVKVWHFKQTGKPPLRSI-KLDNGISFFRTHQESSMLAVCLD----------DFTVNIIDIDTCTIIRKLSGH 543 (583)
Q Consensus 476 s~-~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~h 543 (583)
.+ ..++.|.+|++..........+ ...+ ...+++.++|++.++... .+.|..+|.+ ++.+..+...
T Consensus 201 v~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~ 278 (322)
T 2fp8_A 201 VAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP 278 (322)
T ss_dssp EEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC
T ss_pred EEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC
Confidence 44 5568899999875311122222 2223 788999999987666544 4678888874 7777666543
Q ss_pred c----cceeeEEecCCCcEEEEEeCCCeEEEEeCCCc
Q psy14906 544 M----GQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576 (583)
Q Consensus 544 ~----~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~ 576 (583)
. ..++.+++ .++++.++....+.|..+++...
T Consensus 279 ~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 279 PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 2 34677777 46776666667889999998643
No 265
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.96 E-value=9.7e-05 Score=79.10 Aligned_cols=494 Identities=11% Similarity=0.060 Sum_probs=243.6
Q ss_pred cCcccEEEEEeCCCceEEEEeeCCeEEEEecCCc--------EEEeecCCCCCCeEEEEe-e------CeEEEEE---cC
Q psy14906 30 NHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHF--------KLLSVSPQHEDDITCLSS-D------FFHIYTS---AN 91 (583)
Q Consensus 30 ~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~--------~~~~~~~~h~~~v~~~~~-~------~~~~~~~---~~ 91 (583)
...|.++++. +++.+++++.-+.=.+|-++.. +.+..+. .-++|..++. | +++++++ .+
T Consensus 326 ~~~~ssl~~l--~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~ 402 (1158)
T 3ei3_A 326 TSIAECLTYL--DNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKE 402 (1158)
T ss_dssp CSCCSEEEEC--STTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGG
T ss_pred ccCccEEEEE--CCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCC
Confidence 4466777774 5566777774443344443321 4455555 4467887775 2 3666665 45
Q ss_pred CeEEEEecc--ceeeeeec-ccCccEEEEc-----cCCCEEEEEeCCCcEEEEEcCCCcEEEEee---cc----------
Q psy14906 92 NIIYAWRRG--IDIVGTYK-GHTSPVHLIL-----PFGPHLISVDEESNVKVWDIKAEETYLELS---FD---------- 150 (583)
Q Consensus 92 ~~i~vw~~~--~~~~~~~~-~h~~~v~~is-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~---------- 150 (583)
|.+++...+ .+....++ ..-..++.+. ....||+.+..+.+ .|+.+.. +.+.... |.
T Consensus 403 gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~ 480 (1158)
T 3ei3_A 403 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGN 480 (1158)
T ss_dssp CEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEE
T ss_pred CeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEE
Confidence 689888742 22222221 1224555551 23456666554444 3444321 1111110 00
Q ss_pred ----------CCceEEec-----------ccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCcee--EEEeccCCCe
Q psy14906 151 ----------NDTFKIMG-----------KRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESL--MEFIQTWGPV 207 (583)
Q Consensus 151 ----------~~~~~~~~-----------~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~v 207 (583)
+....... ......|.+.+.+ +.+++.++ ++.+.++.+..++.. ..... ...|
T Consensus 481 l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l-~~ev 556 (1158)
T 3ei3_A 481 VAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEM-EHEV 556 (1158)
T ss_dssp ETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEEC-SSCE
T ss_pred cCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCC-CCce
Confidence 00000000 0112234443333 34565554 577888887755322 22222 3689
Q ss_pred EEEEEecCC-----CCEEEEEcC-CCcEEEEeCCCCeehhhhhhccccceEEEEEe--cCCCEEEEEeCCCeEEEEEccC
Q psy14906 208 TALSFRTDG-----PPMMVSGSN-TGHLTVWNLEDRQVENQIKKAHRKVVTGAHFL--YNEPLLVTSSPDNTLKLWIFDK 279 (583)
Q Consensus 208 ~~~~~~~~~-----~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~~w~~~~ 279 (583)
.|+++.|.. ..+++.|.. |++++|+++.+.+.+.....+......++.+. ....+|..|-.||.+.-+.++.
T Consensus 557 scl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 557 ACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp EEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred EEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence 999998642 138888886 99999999987655433211112234444443 2345788898999998887776
Q ss_pred CCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCC
Q psy14906 280 ADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILP 359 (583)
Q Consensus 280 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (583)
.++.....+...-...++.-..+. ..+..-+.+..+....++.-.. +.. + ......
T Consensus 637 ~tg~l~d~r~~~LG~~pv~L~~~~-~~~~~~V~a~s~rp~liy~~~~-~l~--~--------------------s~l~~~ 692 (1158)
T 3ei3_A 637 ETGLLSDRKKVTLGTQPTVLRTFR-SLSTTNVFACSDRPTVIYSSNH-KLV--F--------------------SNVNLK 692 (1158)
T ss_dssp TTCCEEEEEEEECCSSCCEEEEEE-SSSCEEEEEESSSCEEEEESSS-SEE--E--------------------EEBSSS
T ss_pred CCCccccceeEEcCCCceEEEEEe-eCCceeEEEECCCCEEEEEcCC-ceE--E--------------------eccChH
Confidence 543333222222223455444443 2333333333344444444322 110 0 011111
Q ss_pred ccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecC------
Q psy14906 360 PVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSS------ 433 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------ 433 (583)
++..++.-.. +...+.++. ..+ +.+++..+.... . +........ ..+..++++|+.+.++++..+
T Consensus 693 ~v~~~~~F~s-e~~~~g~v~-~~~-~~LrI~~i~~~~--~--~~~~~ipL~--~Tprri~y~~~~~~~~v~~~~~~~~~~ 763 (1158)
T 3ei3_A 693 EVNYMCPLNS-DGYPDSLAL-ANN-STLTIGTIDEIQ--K--LHIRTVPLY--ESPRKICYQEVSQCFGVLSSRIEVQDT 763 (1158)
T ss_dssp CCCEEEEECC-SSSTTEEEE-ECS-SCEEEEEECCSS--S--EEEEEEECS--SEEEEEEEEGGGTEEEEEEEEEEEECS
T ss_pred HhceEeccCc-ccCCCcEEE-EcC-CceEEEEecccC--C--eeEEEEeCC--CCceEEEEcCCCCEEEEEEEecccccc
Confidence 1111111111 111123333 332 336666654321 1 111111111 456777777776655544321
Q ss_pred -------------------------------------------ceEEEEEcccCccccccCCCCCCCcccCeeEEE---E
Q psy14906 434 -------------------------------------------GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVV---S 467 (583)
Q Consensus 434 -------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~---~ 467 (583)
+.|+++|..+.+.+..+.. .....+.+++ |
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l----~~nE~~~sv~~v~~ 839 (1158)
T 3ei3_A 764 SGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQF----LQNEYALSLVSCKL 839 (1158)
T ss_dssp SSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEEC----CTTEEEEEEEEECC
T ss_pred ccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeC----CCCcceEEEEEEEE
Confidence 3466666666665544432 2233444444 3
Q ss_pred eCC-CcEEEEee----------cCCcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccce
Q psy14906 468 DNL-NQIVISGG----------NDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI 536 (583)
Q Consensus 468 s~~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 536 (583)
..+ ..+++.|. ..|.|.++++.....+.+...+..+++++++-- +|++|| |- .+.+++|++...+.
T Consensus 840 ~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla-~i-g~~l~vy~l~~~~~ 916 (1158)
T 3ei3_A 840 GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLA-SI-NSTVRLYEWTTEKE 916 (1158)
T ss_dssp TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEE-EE-TTEEEEEEECTTSC
T ss_pred ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEE-Ec-CCEEEEEECCCCce
Confidence 322 36777765 347899999985422333444556788887644 454444 33 46899999986654
Q ss_pred EEeecccccceeeEEecCCCcEEEEEeCCCeEEEEe
Q psy14906 537 IRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572 (583)
Q Consensus 537 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~ 572 (583)
+..-..+-..|..+.....+++++.|..-..|.+..
T Consensus 917 L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~ 952 (1158)
T 3ei3_A 917 LRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLA 952 (1158)
T ss_dssp EEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEE
T ss_pred EEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEE
Confidence 431111112233333333567888888776666543
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.92 E-value=2.2e-07 Score=79.55 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=92.2
Q ss_pred cEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCceEEeeccC-
Q psy14906 425 NFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDN- 503 (583)
Q Consensus 425 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~- 503 (583)
+..++...++.+.+||..+.+.+.++... ..-..++ +|++.|+.+..++.|.++|..+. +.+..+....
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~--~v~~~I~V~~~ 176 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRERTTRYS------GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF--ALVGAVQVKLR 176 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEEEEEECS------SCCCCEE--EETTEEEEECSSSEEEEECTTTC--CEEEEEECEET
T ss_pred EEEEEEccCCEEEEEECCcCcEEEEEeCC------CceeEEe--cCCCEEEEECCCCEEEEEcCCCC--eEEEEEEeCCC
Confidence 34444556889999999999999888531 1223444 56777777767889999999988 7777765432
Q ss_pred -----CeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeeccc-------------ccceeeEEecCCCcEEEEEe
Q psy14906 504 -----GISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGH-------------MGQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 504 -----~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h-------------~~~v~~l~~s~d~~~l~s~~ 563 (583)
.++.+.|. +|+..|....+..|.+.|.++++.+..+... .+-.+.|+|+|+++.|...+
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 34566776 7876666657889999999999998776532 13468899999876666555
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.87 E-value=3e-06 Score=77.20 Aligned_cols=232 Identities=8% Similarity=-0.013 Sum_probs=131.6
Q ss_pred cceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCC--cEEEEEccc
Q psy14906 249 KVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDS--TLRIFNTKS 326 (583)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 326 (583)
.....++|+++++++++-..++.|..|+. .. ....... ....+..+++.+ +++++++..... .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~--~g---~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITP--DG---NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT--TC---CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECC--CC---ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCC
Confidence 45678999999997777667888877743 22 2222222 234578899986 677555543322 365666555
Q ss_pred cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeeccc
Q psy14906 327 ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPER 406 (583)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 406 (583)
++..... +...
T Consensus 105 g~~~~~~---------------------------------------------------------~~~~------------ 115 (306)
T 2p4o_A 105 GTVETLL---------------------------------------------------------TLPD------------ 115 (306)
T ss_dssp SCEEEEE---------------------------------------------------------ECTT------------
T ss_pred CeEEEEE---------------------------------------------------------eCCC------------
Confidence 4321110 0000
Q ss_pred ccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCc--cc---cccCCCCCCCcccCeeEEEEeCCCcEEE-EeecC
Q psy14906 407 CKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGA--HR---GSYGHDNQPGHVGGVRGVVSDNLNQIVI-SGGND 480 (583)
Q Consensus 407 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d 480 (583)
......++..+++..+++...++.|+.+|..+++ .. ..+..............+ +|+++.|+ +-...
T Consensus 116 -----~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 116 -----AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp -----CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred -----ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 0112233334444444444457788888876432 11 000000001122234555 78887554 44567
Q ss_pred CcEEEEEccC-CCCCceEEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceE--EeecccccceeeEEec---C
Q psy14906 481 QTVKVWHFKQ-TGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTII--RKLSGHMGQLTDADFS---P 554 (583)
Q Consensus 481 g~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~h~~~v~~l~~s---~ 554 (583)
+.|..+++.. +.......+........+++.++|+++++....+.|.++|.. ++.. ..+.......++++|. |
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~ 267 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEG 267 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTT
T ss_pred CEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccC
Confidence 8899999875 211112223223467889999999887777778899999975 6553 2344333568999998 8
Q ss_pred CCcEEEEEeC
Q psy14906 555 DSRWLITASM 564 (583)
Q Consensus 555 d~~~l~s~~~ 564 (583)
|++.|..++.
T Consensus 268 d~~~LyVt~~ 277 (306)
T 2p4o_A 268 DCTAIYVVTN 277 (306)
T ss_dssp TTTEEEEEEC
T ss_pred CCCEEEEECC
Confidence 8777765543
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.82 E-value=3.9e-06 Score=76.47 Aligned_cols=230 Identities=15% Similarity=0.087 Sum_probs=132.2
Q ss_pred cceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC--CcEEEEeCCCCeeh
Q psy14906 163 SCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT--GHLTVWNLEDRQVE 240 (583)
Q Consensus 163 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~ 240 (583)
.....++|+++++++++-..++.|..||... +....+.. ...+..+++.++|+ ++++.... ..|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEE
Confidence 5677899999999777766789999999864 44433333 35789999999998 65555332 24777787777643
Q ss_pred hhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEe--------ccCCCCCeeEEEeeCCCCEEEE
Q psy14906 241 NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIR--------EGHSAPPNYIQFYGNSSDNILS 312 (583)
Q Consensus 241 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~ 312 (583)
.............++..+++..+++-..++.|..+ +...+..+..... ...-.....+ +| +++.|+.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~--d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLI--DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEE--ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEE--eCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEE
Confidence 22211112233445555555445544457766666 4322111111100 0111123444 55 5655544
Q ss_pred -eeCCCcEEEEEccc-cccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEe
Q psy14906 313 -AAGDSTLRIFNTKS-ETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLW 390 (583)
Q Consensus 313 -~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 390 (583)
-...+.|..+++.. +.... ..++
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~-------------------------------------------------------~~~~ 208 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGE-------------------------------------------------------PEIF 208 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCC-------------------------------------------------------CEEE
T ss_pred EeCCCCEEEEEEeCCCCCCCc-------------------------------------------------------cEEE
Confidence 44567888888754 21100 0000
Q ss_pred ecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcccc--ccCCCCCCCcccCeeEEEEe
Q psy14906 391 SFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG--SYGHDNQPGHVGGVRGVVSD 468 (583)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~h~~~v~~~~~s 468 (583)
- . ......++++++|++.++....+.|.+++.. ++... .+ .......++++|.
T Consensus 209 ~-----------------~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~-----~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 209 V-----------------E--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA-----EQGVIGSTAVAFG 263 (306)
T ss_dssp E-----------------E--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG-----GGTCTTEEEEEEC
T ss_pred e-----------------c--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec-----ccccCCceEEEEe
Confidence 0 0 0235678999999887777778899999975 54422 22 1223568899998
Q ss_pred ---CCCcEEEEeecC
Q psy14906 469 ---NLNQIVISGGND 480 (583)
Q Consensus 469 ---~~~~~l~s~~~d 480 (583)
|+++.|+.+...
T Consensus 264 g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNG 278 (306)
T ss_dssp CSTTTTTEEEEEECT
T ss_pred cccCCCCEEEEECCC
Confidence 887766655543
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.80 E-value=2.5e-06 Score=78.50 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=70.9
Q ss_pred CceEEEEccCCcEEEEE-ecCceEEEEEcccCcc--ccccCCCCCCCcccCeeEEEEeCCCcEEEEeec----------C
Q psy14906 414 KPTCVYITHCGNFVLIG-YSSGHVDRFNIQSGAH--RGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN----------D 480 (583)
Q Consensus 414 ~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d 480 (583)
....++++|+++.|+++ +.++.|.+|++..... ...+. ...+ ...++++++|++.++... .
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-----~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~ 259 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-----KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVD 259 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-----ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-----eCCC-CCCeEECCCCCEEEEecCcccccccCCCc
Confidence 46679999999877666 5568999999875321 11111 1112 778999999987766544 4
Q ss_pred CcEEEEEccCCCCCceEEeecc-----CCeeeEEeccCCcEEEEEeCCceEEEEEccc
Q psy14906 481 QTVKVWHFKQTGKPPLRSIKLD-----NGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533 (583)
Q Consensus 481 g~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 533 (583)
+.|..+|.. + +.+..+... ..++.+++ .+++++++....+.|..+++..
T Consensus 260 ~~v~~~d~~-G--~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 260 PKGIKFDEF-G--NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEECTT-S--CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cEEEEECCC-C--CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 567777764 3 556555543 24566666 4666666666678888888753
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.79 E-value=3.2e-06 Score=71.86 Aligned_cols=161 Identities=7% Similarity=-0.057 Sum_probs=107.3
Q ss_pred CcceEEEeeCCCCCEEEEEecC--CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee
Q psy14906 162 NSCVNVLEPSPVVDIIGVGLSN--KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV 239 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 239 (583)
......+.|++ +.+..+.+.+ ..|+.+|+++++.+.+.... .........+++..+....-.++.+.+||.++.+.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE
Confidence 45567889986 5555665554 48999999999999988755 33333333344453666667789999999999999
Q ss_pred hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEecc--CC---CCCeeEEEeeCCCCEEEEee
Q psy14906 240 ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREG--HS---APPNYIQFYGNSSDNILSAA 314 (583)
Q Consensus 240 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~ 314 (583)
+.++..+ ..-..+ .+++..|+.+..++.|.++ |.. ..+.+..+.- +. ..++.+.+. ++...+..-
T Consensus 98 ~~ti~~~--~~Gwgl--t~dg~~L~vSdgs~~l~~i--Dp~--t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw 167 (243)
T 3mbr_X 98 RARFRYP--GEGWAL--TSDDSHLYMSDGTAVIRKL--DPD--TLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVW 167 (243)
T ss_dssp EEEEECS--SCCCEE--EECSSCEEEECSSSEEEEE--CTT--TCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEET
T ss_pred EEEEeCC--CCceEE--eeCCCEEEEECCCCeEEEE--eCC--CCeEEEEEEEccCCcccccceeeEEe--CCEEEEEEC
Confidence 9988322 222344 4577777777667888888 544 3344444332 21 234566765 666555554
Q ss_pred CCCcEEEEEccccccceeec
Q psy14906 315 GDSTLRIFNTKSETSNKNLG 334 (583)
Q Consensus 315 ~dg~i~iwd~~~~~~~~~~~ 334 (583)
.+..|.+.|..+++....+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEE
Confidence 67899999999998776653
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.77 E-value=2.1e-07 Score=94.70 Aligned_cols=116 Identities=11% Similarity=0.063 Sum_probs=69.7
Q ss_pred EEEEEec-CCCCEEEEEcCCC-----------cEEEEeCCCCeehhh--hhhccccceEEEEEecCCCEEEEEeC-CCeE
Q psy14906 208 TALSFRT-DGPPMMVSGSNTG-----------HLTVWNLEDRQVENQ--IKKAHRKVVTGAHFLYNEPLLVTSSP-DNTL 272 (583)
Q Consensus 208 ~~~~~~~-~~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i 272 (583)
..+++.+ +++ +++.|+.+. .+.+||..+++.... +...+.....++++..++++++.|+. +..+
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 3667777 777 777776532 588999988764322 21122333345677889999999984 4578
Q ss_pred EEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee-CC-----CcEEEEEccccc
Q psy14906 273 KLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA-GD-----STLRIFNTKSET 328 (583)
Q Consensus 273 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~ 328 (583)
.+||... .....+..+.... .-.+++..+ +++.++.|+ .+ ..+.+||..+.+
T Consensus 268 ~~yd~~t--~~W~~~~~~~~~R-~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSS--DSWIPGPDMQVAR-GYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGG--TEEEECCCCSSCC-SSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcC--CceeECCCCCccc-cccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 8886542 2233222222111 112344444 788888888 34 467888877654
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=2.5e-05 Score=67.52 Aligned_cols=164 Identities=9% Similarity=0.045 Sum_probs=112.8
Q ss_pred cCCcceEEEeeCCCCCEE-EEEecCCeEEEEEccCCceeEEEec-cCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q psy14906 160 RWNSCVNVLEPSPVVDII-GVGLSNKKIILHNILTDESLMEFIQ-TWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDR 237 (583)
Q Consensus 160 ~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 237 (583)
+-...+..++|+|+++.| ++...++.|...|.. ++.+..+.. .......+++.+++. ++++.-.++.+.++++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCCC
Confidence 555679999999987655 456778889999997 888887752 226788999999887 6666666788999887654
Q ss_pred ee---hhhhh-----hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEe-------ccCCCCCeeEEE
Q psy14906 238 QV---ENQIK-----KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIR-------EGHSAPPNYIQF 302 (583)
Q Consensus 238 ~~---~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-------~~~~~~v~~~~~ 302 (583)
.. +.... .........++|+|+++.|+++.......+|.++... ....+... ..+...+.++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~-~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL-SSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT-CSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc-cCCceeeecchhhccccccCCceeEEE
Confidence 32 11110 1234457899999999888877766666777665211 11112221 113346789999
Q ss_pred eeCCCCEEEEeeCCCcEEEEEccc
Q psy14906 303 YGNSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 303 ~~~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
.|..+.+++....++.+..+|...
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTC
T ss_pred cCCCCeEEEEECCCCeEEEEcCCC
Confidence 998777777777788888888654
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.67 E-value=3.4e-05 Score=66.68 Aligned_cols=209 Identities=9% Similarity=0.039 Sum_probs=130.7
Q ss_pred EeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeec
Q psy14906 289 IREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGL 368 (583)
Q Consensus 289 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (583)
.+.+-...+..++|.|.++.++++...++.|...|.. ++..+.+....
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g------------------------------- 68 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF------------------------------- 68 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-------------------------------
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-------------------------------
Confidence 4556667899999998444445556778888888886 54443321100
Q ss_pred ccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCccc-
Q psy14906 369 AREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHR- 447 (583)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~- 447 (583)
......+++.+++.++++.-.++.+.++++.....+
T Consensus 69 -------------------------------------------~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 69 -------------------------------------------VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp -------------------------------------------CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred -------------------------------------------CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 034567788888887777666778888887654421
Q ss_pred --cccCCC-CCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCC-CceEEeec--------cCCeeeEEeccCCc
Q psy14906 448 --GSYGHD-NQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGK-PPLRSIKL--------DNGISFFRTHQESS 515 (583)
Q Consensus 448 --~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~--------~~~v~~~~~s~~~~ 515 (583)
...... ...........++|+|+++.|+++.......+|.+..... ..+..... -..+..+++.|...
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 111111 0123456689999999998777777666666776652100 11222211 13578899998654
Q ss_pred -EEEEEeCCceEEEEEccccceEEeecccc---------cceeeEEecCCCcEEEEEeCCCeEEEEeCC
Q psy14906 516 -MLAVCLDDFTVNIIDIDTCTIIRKLSGHM---------GQLTDADFSPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 516 -~l~~~~~dg~i~i~d~~~~~~~~~~~~h~---------~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
+++.....+.+.++|.+ ++.+..+.-.. ..-..|+|.++|+..+ .++.+.++++.-.
T Consensus 186 ~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~~ 252 (255)
T 3qqz_A 186 TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTPQ 252 (255)
T ss_dssp EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC-
T ss_pred eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEec
Confidence 56666677889999976 55554433211 2467899999998544 5778877777543
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.66 E-value=9.7e-05 Score=67.37 Aligned_cols=201 Identities=9% Similarity=-0.045 Sum_probs=115.1
Q ss_pred ccCCCEEEEEe-CCCcEEEEEcCCC---cEEEEeeccCCceEEecccCCcceEEEeeCCCCCEE-EEEecCCeEEEEEcc
Q psy14906 118 LPFGPHLISVD-EESNVKVWDIKAE---ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDII-GVGLSNKKIILHNIL 192 (583)
Q Consensus 118 s~~~~~l~s~~-~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iw~~~ 192 (583)
.+.++.|+.+. .++.|..+++.+. .....+. . ..-.....+++.+.+..| ++-...+.|.+.++.
T Consensus 38 d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~---------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 38 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-S---------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp ETTTTEEEEEETTTTEEEEEEC--------CEEEE-C---------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-e---------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence 44444444443 3467777776641 1111111 0 122345678888755555 444567899999987
Q ss_pred CCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-CcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEe-CCC
Q psy14906 193 TDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS-PDN 270 (583)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~ 270 (583)
.......+.........+++.|.+..++++.... +.|...++.. +....+....-.....+++++++..|+.+. ..+
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence 4433333333346789999999766355554433 6888888763 322222122234678999998877666555 456
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceee
Q psy14906 271 TLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 271 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 333 (583)
.|..++++.. ..+.+............+++. .+..+++-...+.|..++..+++....+
T Consensus 187 ~I~~~d~dg~--~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 187 SISSIDVNGG--NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTSC--SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred eEEEEecCCC--ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 8888876532 223332222222345678875 4556666666788999998777655544
No 275
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.66 E-value=0.00069 Score=70.39 Aligned_cols=445 Identities=8% Similarity=0.044 Sum_probs=236.1
Q ss_pred eCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe-eCeEEEEEcCCeEEEEeccceeeeeec-----ccCcc
Q psy14906 40 RRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS-DFFHIYTSANNIIYAWRRGIDIVGTYK-----GHTSP 113 (583)
Q Consensus 40 p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~~~~i~vw~~~~~~~~~~~-----~h~~~ 113 (583)
.+.+..+-+++ .+-+..||..+.+...........|.++.. ++.+.+++.+ .+..+|........+. -....
T Consensus 70 ~d~~g~lWigT-~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~ 147 (758)
T 3ott_A 70 IIDNTYLYMGT-DNGILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNT 147 (758)
T ss_dssp EETTTEEEEEE-TTEEEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSC
T ss_pred EcCCCcEEEEe-CCCeEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCe
Confidence 35556555554 445789998887654322222345777654 5566666655 7888887544444441 12345
Q ss_pred EEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEc
Q psy14906 114 VHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNI 191 (583)
Q Consensus 114 v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~ 191 (583)
|.++ ..+|...+ +..+ -|..++..+++.. .+...... ......|.++...+++..|-+|+. +-+..+|.
T Consensus 148 i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~-----~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~ 218 (758)
T 3ott_A 148 IYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLPVHS-----SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFP 218 (758)
T ss_dssp EEEEEECTTCCEEE-EETT-EEEEEETTTTEEE-EECCCCCT-----TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEET
T ss_pred EEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE-EecCCCcc-----ccccceeEEEEEECCCCEEEEEEC-CCCeEEcC
Confidence 7777 34555444 4444 4778887776533 22211000 011335888888887776666665 45888998
Q ss_pred cCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhh------hccccceEEEEEecCCCEEEE
Q psy14906 192 LTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIK------KAHRKVVTGAHFLYNEPLLVT 265 (583)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s 265 (583)
.+++...........|.++...++|. |..|+.+ -+.+++..+++...... .-....|.++....+|.+- .
T Consensus 219 ~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-i 294 (758)
T 3ott_A 219 STGQIKQTEAFHNNSIKSLALDGNGD--LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-L 294 (758)
T ss_dssp TTTEEEEEEEEEEEEEEEEEECTTCC--EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-E
T ss_pred CCCeEEeccCCCCCeEEEEEEcCCCC--EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-E
Confidence 76654322112224688888888887 4445544 58888887654321110 0123468888887777644 4
Q ss_pred EeCCCeEEEEEccCCCCCceeeEEec----cCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhh
Q psy14906 266 SSPDNTLKLWIFDKADGNGRLLRIRE----GHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRN 341 (583)
Q Consensus 266 ~~~d~~i~~w~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 341 (583)
|...| +.+... . ...+...... .....|.++.... ++ .|..|+.+| +..++..++.....
T Consensus 295 GT~~G-l~~~~~--~-~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g-~lWiGt~~G-l~~~~~~~~~~~~~--------- 358 (758)
T 3ott_A 295 GTDYG-ISLSRY--N-SALQFIPISQITGTGDGNQFYSLFRDS-KG-FYWFGGANG-LIRFTDPAGERHDA--------- 358 (758)
T ss_dssp EESSS-EEEECC--C-C-CEEEEHHHHSCSCCCCBEEEEEECT-TC-CEEEEETTE-EEEESCTTSSCCCC---------
T ss_pred EeCCc-cccccc--C-CceeEEecccCCCCCCCceEEEEEEcC-CC-CEEEeeCCc-ceeeccccccccee---------
Confidence 55556 444421 1 1111111000 1123466665542 34 455555554 55565443211000
Q ss_pred hhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEc
Q psy14906 342 NLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYIT 421 (583)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 421 (583)
..+..... ........|.++.-.
T Consensus 359 ----------------------------------------------~~~~~~~~-----------~~~l~~~~v~~i~~d 381 (758)
T 3ott_A 359 ----------------------------------------------IWYRMGDK-----------TYPLSHNRIRHIYED 381 (758)
T ss_dssp ----------------------------------------------EEECTTCS-----------SSCCSCSCEEEEEEC
T ss_pred ----------------------------------------------EEeccCCc-----------CCCCCCCceEEEEEC
Confidence 00000000 000001457788877
Q ss_pred cCCcEEEEEecCceEEEEEcccCccccccC-CCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC---CCCce-
Q psy14906 422 HCGNFVLIGYSSGHVDRFNIQSGAHRGSYG-HDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT---GKPPL- 496 (583)
Q Consensus 422 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~- 496 (583)
++|++-+ |+. +.+..||..+++...... ..........|.++...+++++.+ |+..+-|.++|..+. .....
T Consensus 382 ~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~ 458 (758)
T 3ott_A 382 KEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYI 458 (758)
T ss_dssp TTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEE
T ss_pred CCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCccee
Confidence 7776554 444 469999987765433210 000001235688888888777544 555556888886531 00111
Q ss_pred --EEeec-----cCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeecc---cccceeeEEecCCCcEEEEEeCCC
Q psy14906 497 --RSIKL-----DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSG---HMGQLTDADFSPDSRWLITASMDC 566 (583)
Q Consensus 497 --~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---h~~~v~~l~~s~d~~~l~s~~~d~ 566 (583)
..+.. ...|.++...++|.+.+.++..+-+..+|.++++....... ....+.++....+|.+.+. +..|
T Consensus 459 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G 537 (758)
T 3ott_A 459 AEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG 537 (758)
T ss_dssp CSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE
T ss_pred cccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc
Confidence 11111 12488888888888776444445588899887654432111 1245778888888876654 4455
Q ss_pred eEEEEeCCCcc
Q psy14906 567 TIRVWDIPSSQ 577 (583)
Q Consensus 567 ~i~vw~~~~~~ 577 (583)
+..++..+++
T Consensus 538 -l~~~~~~~~~ 547 (758)
T 3ott_A 538 -VMRINPKDES 547 (758)
T ss_dssp -EEEECC--CC
T ss_pred -eEEEecCCCc
Confidence 7788876654
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.66 E-value=2.7e-05 Score=73.27 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=114.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEE-ecCCeEEEEEccCCceeEEE
Q psy14906 122 PHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVG-LSNKKIILHNILTDESLMEF 200 (583)
Q Consensus 122 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~ 200 (583)
.+|+.+. ...|+..++..+.....+ ........++|++.+..|... ...+.|..+++........+
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~------------~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLL------------NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEE------------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred ceeEeec-CccceeeccCCCcEEEEe------------cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 4455443 467888888776544333 234557899999866655544 45688999998765544434
Q ss_pred eccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCC--CeEEEEEcc
Q psy14906 201 IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPD--NTLKLWIFD 278 (583)
Q Consensus 201 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--~~i~~w~~~ 278 (583)
.........+++.+.+..++++-...+.|.+.+++.......+ ...-.....+++.|.+..|+..... +.|...+++
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3333456789999866536667677788999988744322222 2333567899999877666655443 556655443
Q ss_pred CCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccc
Q psy14906 279 KADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
. ..... .....-.....++++|.++.+.++-...+.|..+|+..
T Consensus 234 G--~~~~~--~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 234 G--SGRRI--IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp S--CSCEE--EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred C--CCcEE--EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2 11111 12222345688999974444444445567788888654
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.65 E-value=9e-05 Score=68.57 Aligned_cols=242 Identities=8% Similarity=-0.021 Sum_probs=143.5
Q ss_pred CCeEEEEeeC-eEEEEEcCCeEEEEeccceeeeeecccCccEEEE--ccCCCEEEEEe-CCCcEEEEEcCCCcEEEEeec
Q psy14906 74 DDITCLSSDF-FHIYTSANNIIYAWRRGIDIVGTYKGHTSPVHLI--LPFGPHLISVD-EESNVKVWDIKAEETYLELSF 149 (583)
Q Consensus 74 ~~v~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 149 (583)
+..+|.+.++ -++..+....|+..++.+.....+.........+ .+.++.|..+. ..+.|..++...+.....+.
T Consensus 34 d~~~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~- 112 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS- 112 (349)
T ss_dssp TSSCEEESSSCCEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-
T ss_pred CCCcccccccCceeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-
Confidence 3345655432 2444445566888887664443333223334555 55556665544 46788889988765433332
Q ss_pred cCCceEEecccCCcceEEEeeCCCCCEE-EEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-C
Q psy14906 150 DNDTFKIMGKRWNSCVNVLEPSPVVDII-GVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-G 227 (583)
Q Consensus 150 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g 227 (583)
........+++.+.+..| ++-...+.|.+.++........+.........+++.|.+..++++-... +
T Consensus 113 ----------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 113 ----------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp ----------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred ----------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence 223445678998765555 4445567899999874443333333446789999999766455565555 7
Q ss_pred cEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCC
Q psy14906 228 HLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS-PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNS 306 (583)
Q Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 306 (583)
.|..+++.... ...+....-.....++++|++..|+.+. ..+.|..++++.. ..+. ...........+++. +
T Consensus 183 ~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~--~~~~--~~~~~~~~P~giav~--~ 255 (349)
T 3v64_C 183 RIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKA--VISQGLPHPFAITVF--E 255 (349)
T ss_dssp EEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEE--EECSSCSSEEEEEEE--T
T ss_pred EEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC--ceEE--EEeCCCCCceEEEEE--C
Confidence 89999887432 2222122234578999998776666554 4567887866531 1121 222223455778874 4
Q ss_pred CCEEEEeeCCCcEEEEEccccccceee
Q psy14906 307 SDNILSAAGDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 307 ~~~l~~~~~dg~i~iwd~~~~~~~~~~ 333 (583)
+...++-...+.|..++..+++....+
T Consensus 256 ~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 256 DSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CEEEEecCCCCeEEEEEccCCCccEEe
Confidence 555566666788888886666655444
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.5e-05 Score=76.18 Aligned_cols=148 Identities=11% Similarity=0.034 Sum_probs=94.8
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec-CC----eEEEEE
Q psy14906 117 ILP-FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS-NK----KIILHN 190 (583)
Q Consensus 117 is~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~----~i~iw~ 190 (583)
++| ++..|..+...+.|+.+|.+++...... ........++|++++++|.++.. ++ .+...+
T Consensus 144 vdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~------------~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 144 FDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY------------SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp EETTEEEEEEEEEBTEEEEEEETTTTEEEEEE------------CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred ECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe------------cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 466 4566666665578888998876543332 33456789999999996666554 22 344344
Q ss_pred ccCCcee--EEEeccCCCeEEEEEec-CCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEE-E
Q psy14906 191 ILTDESL--MEFIQTWGPVTALSFRT-DGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVT-S 266 (583)
Q Consensus 191 ~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~ 266 (583)
. .+... ..+.. ......++++| ++. ++++-..++.|..++...+........+.......++|+|++++|+. -
T Consensus 212 ~-~g~~~~~~~l~~-~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 R-ESGFKVITELTK-GQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp G-GGTSCSEEEEEE-CSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred C-CCceeeeeeecc-CCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 3 33322 23332 24567889999 565 77777778899999998765422221122245678999999995544 4
Q ss_pred eCCCeEEEEEccC
Q psy14906 267 SPDNTLKLWIFDK 279 (583)
Q Consensus 267 ~~d~~i~~w~~~~ 279 (583)
...+.|..++.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 4578888887764
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.64 E-value=6.7e-05 Score=69.44 Aligned_cols=186 Identities=12% Similarity=0.005 Sum_probs=113.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEE-ecCCeEEEEEccCCceeEEE
Q psy14906 122 PHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVG-LSNKKIILHNILTDESLMEF 200 (583)
Q Consensus 122 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~ 200 (583)
.+|+.+. ...|+..++........+ ........++|++....|... ...+.|..+++........+
T Consensus 45 ~~ll~~~-~~~I~~i~~~g~~~~~~~------------~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 45 PVLLFAN-RIDIRQVLPHRSEYTLLL------------NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp CEEEEEC-BSCEEEECTTSCCEEEEE------------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ceeEeec-ccceEEEeCCCCeeEEee------------cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 3444433 456888887765443333 233457899999866666544 45688999998765544433
Q ss_pred eccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeC-C-CeEEEEEcc
Q psy14906 201 IQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP-D-NTLKLWIFD 278 (583)
Q Consensus 201 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-~~i~~w~~~ 278 (583)
.........+++.+.+..++++-...+.|.+.+++... ...+....-.....+++.|.+..|+.... . +.|...+++
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 33335668899998655366777777899999987543 22221223356789999986665555543 3 566666544
Q ss_pred CCCCCceeeEEe-ccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccc
Q psy14906 279 KADGNGRLLRIR-EGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 279 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
. .....+ ...-.....++++|.++.+.++-...+.|..+|+..
T Consensus 191 G-----~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 191 G-----SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp S-----CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred C-----CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2 222222 222345688999974444444444567788888754
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.63 E-value=0.00015 Score=66.20 Aligned_cols=184 Identities=10% Similarity=-0.030 Sum_probs=112.3
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEE-ecCCeEEEEEccC---CceeE
Q psy14906 123 HLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVG-LSNKKIILHNILT---DESLM 198 (583)
Q Consensus 123 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iw~~~~---~~~~~ 198 (583)
+|+.+. ...|+..|+.+.+....+ ........++|+++++.|..+ ..++.|..+++.. +....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~------------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLI------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEE------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred EEEEEC-CCeEEEEECCCcceEehh------------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 444443 457899999887655544 234567899999876655554 4568899999875 12222
Q ss_pred -EEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCC--CeEEEE
Q psy14906 199 -EFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPD--NTLKLW 275 (583)
Q Consensus 199 -~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--~~i~~w 275 (583)
.+.........+++.+.+..++++-...+.|.++++........+ .........+++.|.+..|+.+... +.|...
T Consensus 70 ~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~ 148 (316)
T 1ijq_A 70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 148 (316)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEE
Confidence 233222456899999765536666677889999998754322222 2233567899999876666555543 566666
Q ss_pred EccCCCCCceeeEEe-ccCCCCCeeEEEeeCCCCEEEEe-eCCCcEEEEEccc
Q psy14906 276 IFDKADGNGRLLRIR-EGHSAPPNYIQFYGNSSDNILSA-AGDSTLRIFNTKS 326 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 326 (583)
+++. .....+ ...-.....+++++ ++..|+.+ ...+.|..+|+..
T Consensus 149 ~~dG-----~~~~~~~~~~~~~P~gla~d~-~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 149 GLNG-----VDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ETTS-----CCEEEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS
T ss_pred cCCC-----CCeEEEEECCCCCceEEEEec-cCCEEEEEECCCCeEEEEecCC
Confidence 5532 222222 22234568999997 45555544 4567888888764
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.62 E-value=2.3e-06 Score=87.08 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=72.9
Q ss_pred Ecc-CCCEEEEEeCCC-----------cEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec-C
Q psy14906 117 ILP-FGPHLISVDEES-----------NVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS-N 183 (583)
Q Consensus 117 is~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d 183 (583)
+.+ +++.++.|+.+. .+.+||..+++-....... ..+.....++++..+++++++|+. +
T Consensus 193 v~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--------~~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 193 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--------TKHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE--------CSCCCSSCEEEECTTSCEEEECSSST
T ss_pred EEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC--------CCCCCccccccCCCCCCEEEeCCCCC
Confidence 456 888888887543 5889999887532211110 023334445777889999999884 4
Q ss_pred CeEEEEEccCCceeEEEeccCC-CeEEEEEecCCCCEEEEEc-CC-----CcEEEEeCCCCee
Q psy14906 184 KKIILHNILTDESLMEFIQTWG-PVTALSFRTDGPPMMVSGS-NT-----GHLTVWNLEDRQV 239 (583)
Q Consensus 184 ~~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~-~d-----g~i~vwd~~~~~~ 239 (583)
..+.+||..+++-...-..+.. .-.+++..++++ +++.|+ .+ ..+.+||..+++.
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcc
Confidence 5899999987654332221211 223456667888 888887 34 5699999987653
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.62 E-value=4.1e-06 Score=86.54 Aligned_cols=191 Identities=11% Similarity=0.053 Sum_probs=106.2
Q ss_pred EEc-cCCCEEEEEeC-CC----cEEEEEcCCC-cEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC-----
Q psy14906 116 LIL-PFGPHLISVDE-ES----NVKVWDIKAE-ETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN----- 183 (583)
Q Consensus 116 ~is-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----- 183 (583)
.+| |||++||.+.. +| +|+++|+.++ +.+.. ........++|+|||+.|+....+
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------------~~~~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------------KVSGTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------------CEEEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------------cccCceeeEEEecCCCEEEEEEECCCCCC
Confidence 359 99999886533 33 5999999998 63211 001123468899999988887765
Q ss_pred CeEEEEEccCCce--eEEEe-ccCCCeEEEEEecCCCCEEEEEcC--CCcEEEEeCCCCe-eh--hhhhhccccceEEEE
Q psy14906 184 KKIILHNILTDES--LMEFI-QTWGPVTALSFRTDGPPMMVSGSN--TGHLTVWNLEDRQ-VE--NQIKKAHRKVVTGAH 255 (583)
Q Consensus 184 ~~i~iw~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~-~~--~~~~~~~~~~v~~~~ 255 (583)
..|.++++.+++. ...+. ........+.|+|||++++++... ...|.++|+.++. .. ..+.........++.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 3688888877642 23333 222456788999999955554432 3458888988652 12 223233444555666
Q ss_pred EecCCCEEEEEeCC--CeEEEEEccCCC-CCceeeEEeccCCC--CCeeEEEeeCCCCEEEEeeCCCcEEEEE
Q psy14906 256 FLYNEPLLVTSSPD--NTLKLWIFDKAD-GNGRLLRIREGHSA--PPNYIQFYGNSSDNILSAAGDSTLRIFN 323 (583)
Q Consensus 256 ~~~~~~~l~s~~~d--~~i~~w~~~~~~-~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd 323 (583)
|+.++.+++....+ +..+||.++... ...+.. +..+.. .+..+.+. .+..+++...++..++|-
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 55444444444443 444555545432 121220 112222 23334432 344555666667554443
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.62 E-value=2.3e-05 Score=74.83 Aligned_cols=150 Identities=6% Similarity=-0.017 Sum_probs=90.5
Q ss_pred EccC--CCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC---C-eEEEEE
Q psy14906 117 ILPF--GPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN---K-KIILHN 190 (583)
Q Consensus 117 is~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~-~i~iw~ 190 (583)
+.|+ +..|..+...+.|+.+|..+++..... ........++++++|+++++.... . .+...+
T Consensus 146 vd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~------------~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 146 FDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT------------TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp ECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC------------CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEEC
T ss_pred EccccCCCEEEEEeCCCCEEEEECCCCEEEEee------------cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEE
Confidence 3663 455666554488999998877655433 334568899999999944443321 1 233344
Q ss_pred ccCCcee-EEEeccCCCeEEEEEec-CCCCEEEEEcCCCcEEEEeCCCCeehhhh-hhccccceEEEEEecCCCEEEEE-
Q psy14906 191 ILTDESL-MEFIQTWGPVTALSFRT-DGPPMMVSGSNTGHLTVWNLEDRQVENQI-KKAHRKVVTGAHFLYNEPLLVTS- 266 (583)
Q Consensus 191 ~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~- 266 (583)
...+... ..+. .......+++.| ++. ++++-..++.|+.+|..+++....+ ..+....-..++|+|+++.|+.+
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 3322111 1222 224567789999 665 6666667788999999877552222 11122233469999999955544
Q ss_pred eCCCeEEEEEccCC
Q psy14906 267 SPDNTLKLWIFDKA 280 (583)
Q Consensus 267 ~~d~~i~~w~~~~~ 280 (583)
...+.|..++++..
T Consensus 292 ~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 292 NGKHCIYRVDYNRE 305 (433)
T ss_dssp TTTTEEEEEEBCTT
T ss_pred CCCCEEEEEeCCCC
Confidence 45678888876643
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.56 E-value=0.00018 Score=67.85 Aligned_cols=246 Identities=9% Similarity=0.006 Sum_probs=141.6
Q ss_pred EEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCceeeEEeccCCCCC
Q psy14906 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS-PDNTLKLWIFDKADGNGRLLRIREGHSAPP 297 (583)
Q Consensus 219 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v 297 (583)
+|+.+. ...|+..++........+ .....+..++|++.+..|+.+. ..+.|..++++..................+
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 344433 357888888765443333 3446788999998766555554 467777776543210011222233233456
Q ss_pred eeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccE
Q psy14906 298 NYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNI 377 (583)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (583)
..+++.+..+.+.++-...+.|.+.++........+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-------------------------------------------- 197 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------------------------------------------- 197 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------------------------------------------
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------------------------------------------
Confidence 788887644444455555677777776543211100
Q ss_pred EEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec--CceEEEEEcccCccccccCCCCC
Q psy14906 378 AAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS--SGHVDRFNIQSGAHRGSYGHDNQ 455 (583)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~ 455 (583)
. ........++++|.+.+|+.... .+.|...++.........
T Consensus 198 -------------~------------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~----- 241 (400)
T 3p5b_L 198 -------------R------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----- 241 (400)
T ss_dssp -------------E------------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-----
T ss_pred -------------e------------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-----
Confidence 0 00035778999997766666553 377888888654333322
Q ss_pred CCcccCeeEEEEeCCCcEEEEee-cCCcEEEEEccCCCCCceEEeec---cCCeeeEEeccCCcEEEEEeCCceEEEEEc
Q psy14906 456 PGHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQTGKPPLRSIKL---DNGISFFRTHQESSMLAVCLDDFTVNIIDI 531 (583)
Q Consensus 456 ~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 531 (583)
...-.....|++++++..|+.+. ..+.|...|++.. ........ -.....+++ ..+.++.+-...+.|..+|.
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--CCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEES
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC--ccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEc
Confidence 23335678999998777666554 5678999998765 33333332 134556666 23445555566788999997
Q ss_pred cccceEEeecccccceeeE
Q psy14906 532 DTCTIIRKLSGHMGQLTDA 550 (583)
Q Consensus 532 ~~~~~~~~~~~h~~~v~~l 550 (583)
.+|+.+..+.........+
T Consensus 319 ~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 319 LTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp SSCCCCEEEECSCSCEEEE
T ss_pred CCCCceEEEecCCCCCceE
Confidence 7776665554333333444
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=2.9e-05 Score=80.22 Aligned_cols=116 Identities=8% Similarity=0.050 Sum_probs=69.0
Q ss_pred CeEEEEEe-cCCCCEEEEEcCCC----cEEEEeCCCC-eehhhhhhccccceEEEEEecCCCEEEEEeCC-----CeEEE
Q psy14906 206 PVTALSFR-TDGPPMMVSGSNTG----HLTVWNLEDR-QVENQIKKAHRKVVTGAHFLYNEPLLVTSSPD-----NTLKL 274 (583)
Q Consensus 206 ~v~~~~~~-~~~~~~l~s~~~dg----~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~ 274 (583)
.+...+|| |||+.++++...+| .|+++|+.++ +.+... -......++|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 99994444444433 4999999988 643211 11223568899999888777654 24555
Q ss_pred EEccCCCCCceeeEEec-cCCCCCeeEEEeeCCCCEEEEeeC---CCcEEEEEcccc
Q psy14906 275 WIFDKADGNGRLLRIRE-GHSAPPNYIQFYGNSSDNILSAAG---DSTLRIFNTKSE 327 (583)
Q Consensus 275 w~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~ 327 (583)
+++ .++.......+. ........+.|+| |+++|+..+. ...|.++|+.++
T Consensus 252 ~~l--gt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVM--GKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EET--TSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEC--CCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCC
Confidence 544 332222122222 2223456778997 7888776553 234666666543
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.53 E-value=0.00014 Score=66.12 Aligned_cols=246 Identities=9% Similarity=0.054 Sum_probs=139.4
Q ss_pred EEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEE-EEeCCCeEEEEEccCCCCCceeeEEeccCCCCC
Q psy14906 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLV-TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPP 297 (583)
Q Consensus 219 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v 297 (583)
+|+.+. ...|+..++........+.........+++|.+.+..|+ +-...+.|..++++.. .... ......-...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~--~~~~-~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--ESVQ-NVVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSS--SCCC-EEEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCC--CceE-EEEcCCCCCc
Confidence 333333 357999999865321211122234567899998655554 4445677877765432 1111 1112222356
Q ss_pred eeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccE
Q psy14906 298 NYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNI 377 (583)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (583)
..+++.+.++...++-...+.|.++++..... ..+.
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~------------------------------------------- 117 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLF------------------------------------------- 117 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------------------------------------------
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEE-------------------------------------------
Confidence 78888864455555555667888888754321 1100
Q ss_pred EEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec--CceEEEEEcccCccccccCCCCC
Q psy14906 378 AAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS--SGHVDRFNIQSGAHRGSYGHDNQ 455 (583)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~ 455 (583)
. ........++++|.+..|+.... .+.|..+++.........
T Consensus 118 -------------~------------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----- 161 (318)
T 3sov_A 118 -------------W------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII----- 161 (318)
T ss_dssp -------------C------------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-----
T ss_pred -------------e------------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-----
Confidence 0 00145678999987766666653 578888887643322222
Q ss_pred CCcccCeeEEEEeCCCcEEEEe-ecCCcEEEEEccCCCCCceEEee-ccCCeeeEEeccCCcEEEEEeCCceEEEEEccc
Q psy14906 456 PGHVGGVRGVVSDNLNQIVISG-GNDQTVKVWHFKQTGKPPLRSIK-LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDT 533 (583)
Q Consensus 456 ~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 533 (583)
...-.....++++|++..|+.+ ...+.|..+|++.. ....... .......+++. .+.++.+-...+.|..++..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT--NRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC--ceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCC
Confidence 1223456899999966655544 45678999998764 3322222 22456667774 344555555678999999887
Q ss_pred cceEEeecccccceeeEE
Q psy14906 534 CTIIRKLSGHMGQLTDAD 551 (583)
Q Consensus 534 ~~~~~~~~~h~~~v~~l~ 551 (583)
|+....+........+++
T Consensus 239 G~~~~~i~~~~~~P~~i~ 256 (318)
T 3sov_A 239 GEGLREIHSDIFSPMDIH 256 (318)
T ss_dssp CCSCEEEECCCSSCCCEE
T ss_pred CCceEEEeCCCCCCcEEE
Confidence 776555543323333443
No 287
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.53 E-value=0.0001 Score=69.34 Aligned_cols=240 Identities=8% Similarity=-0.037 Sum_probs=142.1
Q ss_pred eEEEEeeC-eEEEEEcCCeEEEEeccceeeeeecccCccEEEE--ccCCCEEEEE-eCCCcEEEEEcCCCcEEEEeeccC
Q psy14906 76 ITCLSSDF-FHIYTSANNIIYAWRRGIDIVGTYKGHTSPVHLI--LPFGPHLISV-DEESNVKVWDIKAEETYLELSFDN 151 (583)
Q Consensus 76 v~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~h~~~v~~i--s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~ 151 (583)
-+|.+.++ -++..+....|+..++.+.....+.........+ .+.++.|+.+ ...+.|..++.+.+.....+.
T Consensus 79 ~~C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--- 155 (386)
T 3v65_B 79 RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--- 155 (386)
T ss_dssp SCEEECSSCCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC---
T ss_pred CeECCccccceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe---
Confidence 34555432 3455556677888887654433333333334555 5555555554 456789999988765433332
Q ss_pred CceEEecccCCcceEEEeeCCCCCEE-EEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-CcE
Q psy14906 152 DTFKIMGKRWNSCVNVLEPSPVVDII-GVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-GHL 229 (583)
Q Consensus 152 ~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i 229 (583)
........+++.+.+..| ++-...+.|.+.++........+.........+++.|.+..++++-... +.|
T Consensus 156 --------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I 227 (386)
T 3v65_B 156 --------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 227 (386)
T ss_dssp --------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred --------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEE
Confidence 223345678888765555 4445567888888864443333333446789999999776455555445 788
Q ss_pred EEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCC
Q psy14906 230 TVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS-PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSD 308 (583)
Q Consensus 230 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 308 (583)
..+++.... ...+....-.....++++|++..|+.+. ..+.|..++++.. ..+ ..+.........+++. .+.
T Consensus 228 ~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~--~~~~~~~~~P~giav~--~~~ 300 (386)
T 3v65_B 228 EASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRK--AVISQGLPHPFAITVF--EDS 300 (386)
T ss_dssp EEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC--SCE--EEECSSCSSEEEEEEE--TTE
T ss_pred EEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC--eeE--EEEECCCCCceEEEEE--CCE
Confidence 888886432 2222122234578999998766665554 4567777755421 112 1222223455778884 455
Q ss_pred EEEEeeCCCcEEEEEccccccceee
Q psy14906 309 NILSAAGDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 309 ~l~~~~~dg~i~iwd~~~~~~~~~~ 333 (583)
.+++-...+.|..++..+++....+
T Consensus 301 ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 301 LYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEeeCCCCeEEEEECCCCcceEEE
Confidence 6666667788988887676655544
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=6.3e-05 Score=71.76 Aligned_cols=157 Identities=9% Similarity=0.040 Sum_probs=93.2
Q ss_pred CCceEEEEcc-CCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEE-EEeecCCcEEEEEccC
Q psy14906 413 SKPTCVYITH-CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIV-ISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 413 ~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~ 490 (583)
.....++++| ++.++++-..++.|+.++...+....... .........++|+|++++| ++-...+.|..++.+.
T Consensus 226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~----~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT----IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE----cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 3467889999 66766666678899999988665422221 1223457799999999954 4555678899988764
Q ss_pred CCCCc--eEEeecc----------------CCee-eEEec--------cCCcEEEEEeCCceEEEEEccccceEEeec--
Q psy14906 491 TGKPP--LRSIKLD----------------NGIS-FFRTH--------QESSMLAVCLDDFTVNIIDIDTCTIIRKLS-- 541 (583)
Q Consensus 491 ~~~~~--~~~~~~~----------------~~v~-~~~~s--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 541 (583)
..... ...+... .... .++.. ++|.++++-...+.|+.++ .+|+.....-
T Consensus 302 ~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g 380 (430)
T 3tc9_A 302 KTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRG 380 (430)
T ss_dssp TTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECC
T ss_pred ccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCC
Confidence 21011 1111110 1122 34443 3355555555667888888 3454332221
Q ss_pred -----c--c--------ccceeeEEecCC-CcEEEEEeCCCeEEEEeCC
Q psy14906 542 -----G--H--------MGQLTDADFSPD-SRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 542 -----~--h--------~~~v~~l~~s~d-~~~l~s~~~d~~i~vw~~~ 574 (583)
+ . -.....|+++|+ +.++++-...+.|+..+++
T Consensus 381 ~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 381 SNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 1 0 124778999994 6655655566788887754
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.51 E-value=0.00026 Score=64.84 Aligned_cols=148 Identities=5% Similarity=-0.069 Sum_probs=87.9
Q ss_pred CCceEEEEccCCcEEEEEecCceEEE-EEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 413 SKPTCVYITHCGNFVLIGYSSGHVDR-FNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
..+..+.+.+++++++++.. |.++. .|- .+..-..+. ......+..+++.++++.++ ++.+|.+++.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~-gG~tW~~~~----~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSR-GSFYSTWEP-GQTAWEPHN----RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS 235 (327)
T ss_dssp CCEEEEEECTTSCEEEEETT-SSEEEEECT-TCSSCEEEE----CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE
T ss_pred cceEEEEEcCCCcEEEEECC-CcEEEEeCC-CCCceeECC----CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC
Confidence 34678889998888877654 44433 331 122222221 23456788999999887654 455788777642212
Q ss_pred CCCceEEee-----ccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEEeec---ccccceeeEEecCCCcEEEEEe
Q psy14906 492 GKPPLRSIK-----LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLS---GHMGQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 492 ~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~h~~~v~~l~~s~d~~~l~s~~ 563 (583)
+.-..+. ....+..+.+.+++.+++++. ++.+ .+..+.|+.-..+. .+...+.++.|.+++. ++.++
T Consensus 236 --~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G 310 (327)
T 2xbg_A 236 --ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG 310 (327)
T ss_dssp --EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEEC
T ss_pred --CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEc
Confidence 1111111 123578888988887777654 6666 44555555444343 2345688899986665 55667
Q ss_pred CCCeEEEEe
Q psy14906 564 MDCTIRVWD 572 (583)
Q Consensus 564 ~d~~i~vw~ 572 (583)
.+|.|.-++
T Consensus 311 ~~G~i~~~~ 319 (327)
T 2xbg_A 311 QKGILLRYV 319 (327)
T ss_dssp STTEEEEEC
T ss_pred CCceEEEEc
Confidence 789877665
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.49 E-value=4.6e-05 Score=68.38 Aligned_cols=149 Identities=14% Similarity=0.301 Sum_probs=100.4
Q ss_pred CceEEEEEcc--cCccccccCCCCCC--CcccCeeEEEE--eCC-Cc-EEEEeecCCcEEEEEccCC-----CCCceEEe
Q psy14906 433 SGHVDRFNIQ--SGAHRGSYGHDNQP--GHVGGVRGVVS--DNL-NQ-IVISGGNDQTVKVWHFKQT-----GKPPLRSI 499 (583)
Q Consensus 433 dg~i~i~d~~--~~~~~~~~~~~~~~--~h~~~v~~~~~--s~~-~~-~l~s~~~dg~i~iwd~~~~-----~~~~~~~~ 499 (583)
+++|.+|++. ++. +..+...... .....+..+++ +|. ++ +++....+|.+..|++... ..++++.+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5789999773 333 3333110000 11156777887 774 43 6777888899999998432 11567888
Q ss_pred eccCCeeeEEeccCCcEEEEEeCCceEEEEEcc-----ccceEEeec-cc-ccceeeEEe--cCCCc-EEEEEe-CCCeE
Q psy14906 500 KLDNGISFFRTHQESSMLAVCLDDFTVNIIDID-----TCTIIRKLS-GH-MGQLTDADF--SPDSR-WLITAS-MDCTI 568 (583)
Q Consensus 500 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~-~h-~~~v~~l~~--s~d~~-~l~s~~-~d~~i 568 (583)
...+.+..+...+....|+++-++.-|..++.+ +++.+..+. ++ ...+..|++ .++++ +|++++ .++++
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 888899999999999999999999777777754 345565542 22 236888887 45555 666555 56799
Q ss_pred EEEeCC-Cccccccc
Q psy14906 569 RVWDIP-SSQLIDCF 582 (583)
Q Consensus 569 ~vw~~~-~~~~~~~~ 582 (583)
.+||.+ +.+.+..|
T Consensus 257 ~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 257 AIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEESSTTCCEEEEE
T ss_pred EEEECCCCCcEEEEE
Confidence 999996 67777665
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.49 E-value=0.00014 Score=66.08 Aligned_cols=160 Identities=8% Similarity=-0.021 Sum_probs=101.4
Q ss_pred CceEEEEccCCc-EEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEee--cCCcEEEEEccC
Q psy14906 414 KPTCVYITHCGN-FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGG--NDQTVKVWHFKQ 490 (583)
Q Consensus 414 ~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~ 490 (583)
.+..+++.+.+. +.++-...+.|.++++......... .........+++.|.+..|+.+. ..+.|...+++.
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE-----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 466788887554 4455556788999998654332222 23445678999998765555444 357788887765
Q ss_pred CCCCceEEee-ccCCeeeEEeccCCcEEEEEe-CCceEEEEEccccceEEeecccccceeeEEecCCCcEEEEEeCCCeE
Q psy14906 491 TGKPPLRSIK-LDNGISFFRTHQESSMLAVCL-DDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTI 568 (583)
Q Consensus 491 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i 568 (583)
. ....... .-.....++++|++..|..+. ..+.|..+|++.......+.+.......+++. .+..+.+-...+.|
T Consensus 155 ~--~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V 231 (318)
T 3sov_A 155 S--SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSI 231 (318)
T ss_dssp C--SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEE
T ss_pred C--CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeE
Confidence 4 2222222 224678999999777666554 46789999987443322233334456677775 34455566667889
Q ss_pred EEEeCCCcccccc
Q psy14906 569 RVWDIPSSQLIDC 581 (583)
Q Consensus 569 ~vw~~~~~~~~~~ 581 (583)
..++..+|+.++.
T Consensus 232 ~~~~~~~G~~~~~ 244 (318)
T 3sov_A 232 LACNKYTGEGLRE 244 (318)
T ss_dssp EEEETTTCCSCEE
T ss_pred EEEECCCCCceEE
Confidence 9999888876554
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.49 E-value=0.00035 Score=65.95 Aligned_cols=233 Identities=8% Similarity=-0.056 Sum_probs=140.3
Q ss_pred EEEEEcCCeEEEEeccceeeeeecccCccEEEE--ccCCCEEEEEe-CCCcEEEEEcCCCc----EEEEeeccCCceEEe
Q psy14906 85 HIYTSANNIIYAWRRGIDIVGTYKGHTSPVHLI--LPFGPHLISVD-EESNVKVWDIKAEE----TYLELSFDNDTFKIM 157 (583)
Q Consensus 85 ~~~~~~~~~i~vw~~~~~~~~~~~~h~~~v~~i--s~~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~ 157 (583)
++..+....|+..++.+.....+......+..+ .+.+..|..+. ..+.|+.+++.... ....+.
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--------- 155 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--------- 155 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---------
T ss_pred eeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---------
Confidence 555666788988888665443343344455555 56566665554 45778888876522 222221
Q ss_pred cccCCcceEEEeeCCCCCEE-EEEecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcC-CCcEEEEeCC
Q psy14906 158 GKRWNSCVNVLEPSPVVDII-GVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSN-TGHLTVWNLE 235 (583)
Q Consensus 158 ~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~ 235 (583)
........+++.+.+..| ++-...+.|.+.++........+.........|++.|.+..++++-.. .+.|...++.
T Consensus 156 --~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 156 --RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp --SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred --CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 234567889999855544 444567889999987554444444444568999999976634444422 4789999987
Q ss_pred CCeehhhhhhccccceEEEEEecCCCEEEEEeC-CCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee
Q psy14906 236 DRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP-DNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA 314 (583)
Q Consensus 236 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 314 (583)
... ...+....-.....|++++++..|+.+.. .+.|..++++.. ..+.+......-.....+++. .+..+++-.
T Consensus 234 G~~-~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~ 308 (400)
T 3p5b_L 234 GVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVF--EDKVFWTDI 308 (400)
T ss_dssp SCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--CCEEEEECSSTTSSEEEEEEE--TTEEEEEES
T ss_pred CCc-cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC--ccEEEEeCCCCCCCCEEEEEe--CCEEEEecC
Confidence 433 22221223356789999988777766654 567777766432 233333222223345677764 455666666
Q ss_pred CCCcEEEEEccccccceee
Q psy14906 315 GDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 315 ~dg~i~iwd~~~~~~~~~~ 333 (583)
..+.|..+|..+++....+
T Consensus 309 ~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SSCSEEEEESSSCCCCEEE
T ss_pred CCCeEEEEEcCCCCceEEE
Confidence 6788999997777665554
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.40 E-value=0.00021 Score=68.09 Aligned_cols=157 Identities=10% Similarity=0.039 Sum_probs=96.5
Q ss_pred CCceEEEEcc-CCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEE-EEeecCCcEEEEEccC
Q psy14906 413 SKPTCVYITH-CGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIV-ISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 413 ~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~ 490 (583)
.....++++| +|.+.++-..++.|+.++..++.....+.. .+....-..++|+|+++.| ++-...+.|+.+++..
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~---~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM---MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE---CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec---cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 3466788999 566666666778899999887765222211 1122233479999999855 4445567899988763
Q ss_pred CCCCc--eEEeec----------------cCCeeeEEe---------ccCCcEEEEEeCCceEEEEEccccceEEeeccc
Q psy14906 491 TGKPP--LRSIKL----------------DNGISFFRT---------HQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGH 543 (583)
Q Consensus 491 ~~~~~--~~~~~~----------------~~~v~~~~~---------s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~h 543 (583)
..... ...+.. -.....+++ .++|.++++-...+.|+.++. +|... .+.+.
T Consensus 305 ~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~ 382 (433)
T 4hw6_A 305 ETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGR 382 (433)
T ss_dssp TTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECC
T ss_pred CCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeC
Confidence 21121 111111 123566888 677777777667789999985 45433 22211
Q ss_pred ------------------ccceeeEEec-CCCcEEEEEeCCCeEEEEeCC
Q psy14906 544 ------------------MGQLTDADFS-PDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 544 ------------------~~~v~~l~~s-~d~~~l~s~~~d~~i~vw~~~ 574 (583)
-.....|+++ +++.++++=...+.|+..+++
T Consensus 383 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 383 GNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1236678998 667666665666788887764
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.39 E-value=7.2e-05 Score=67.13 Aligned_cols=198 Identities=10% Similarity=0.192 Sum_probs=122.4
Q ss_pred EEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecC----CC---EEEEEe-C--CCeEEEEEccCCCCCceeeE
Q psy14906 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYN----EP---LLVTSS-P--DNTLKLWIFDKADGNGRLLR 288 (583)
Q Consensus 219 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~s~~-~--d~~i~~w~~~~~~~~~~~~~ 288 (583)
+++.....+-+.+||+ +++.++.+ . .+.++.+..-|+ |+ ++++.. . +++|.+|+++..... +.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~-~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l~ 114 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSY-N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQ 114 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEE-C--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---EE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEc-c--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---ee
Confidence 6666667788999999 68888777 2 255666666553 22 233333 3 589999988754332 33
Q ss_pred Eecc------CC-CCCeeEEE--eeCCCC-EEEEeeCCCcEEEEEccccc---cceeeccchhhhhhhhhhcchhccccc
Q psy14906 289 IREG------HS-APPNYIQF--YGNSSD-NILSAAGDSTLRIFNTKSET---SNKNLGIASANRNNLKRKNRLEKMNEK 355 (583)
Q Consensus 289 ~~~~------~~-~~v~~~~~--~~~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (583)
.... .. ..+..+++ +|.++. +++....+|.+..|++.... ....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~----------------------- 171 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK----------------------- 171 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE-----------------------
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce-----------------------
Confidence 3311 11 56677887 553454 67888888999999884321 1000
Q ss_pred cCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEecCce
Q psy14906 356 FILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGH 435 (583)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 435 (583)
.++-+.+. ..+..+...+....|+++-++..
T Consensus 172 ------------------------------lVR~f~lg-------------------sq~EgcvvDd~~g~Lyv~eEd~G 202 (355)
T 3amr_A 172 ------------------------------KVRAFKMN-------------------SQTEGMAADDEYGRLYIAEEDEA 202 (355)
T ss_dssp ------------------------------EEEEEECS-------------------SCEEEEEEETTTTEEEEEETTTE
T ss_pred ------------------------------EEEEecCC-------------------CCcceEEEcCCCCeEEEecccce
Confidence 11111111 45778888998999999999877
Q ss_pred EEEEEcc-----cCccccccCCCCCCCcccCeeEEEEe--CCCc-EEEEee-cCCcEEEEEcc-CCCCCceEEee
Q psy14906 436 VDRFNIQ-----SGAHRGSYGHDNQPGHVGGVRGVVSD--NLNQ-IVISGG-NDQTVKVWHFK-QTGKPPLRSIK 500 (583)
Q Consensus 436 i~i~d~~-----~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~-~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~ 500 (583)
|..|+.. +++.+..+.. ..-...+..|++- ++++ +|+.++ .+.++.+||.. +. +.+..+.
T Consensus 203 Iw~~da~p~~~~~~~~v~~~~~---g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~--~~vg~f~ 272 (355)
T 3amr_A 203 IWKFSAEPDGGSNGTVIDRADG---RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN--KYVADFR 272 (355)
T ss_dssp EEEEECSTTSCSCCEEEEEBSS---SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC--CEEEEEE
T ss_pred EEEEeCCcCCCCCceEEEEecC---CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC--cEEEEEE
Confidence 8888855 2333433311 1223468888884 4555 555544 67899999996 44 5666654
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.37 E-value=0.00099 Score=58.54 Aligned_cols=268 Identities=15% Similarity=0.172 Sum_probs=161.2
Q ss_pred CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEE
Q psy14906 130 ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTA 209 (583)
Q Consensus 130 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~ 209 (583)
+..|.|-|+.++....+.+. ..+ +.-.+|..+.||.-. ..++.++|+++.+.++.+.-. ..|.-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi----------~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~Vvf 111 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI----------SAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTF 111 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC----------CCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEE
T ss_pred CCEEEEEECCCCCCcccccc----------ccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEE
Confidence 34788889888665544432 112 234588888888765 678999999999999988877 67777
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEeCCCC-eehhhhhhcc----ccceEEEEEecCCCEEEEEeC-------CCeEEEEEc
Q psy14906 210 LSFRTDGPPMMVSGSNTGHLTVWNLEDR-QVENQIKKAH----RKVVTGAHFLYNEPLLVTSSP-------DNTLKLWIF 277 (583)
Q Consensus 210 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~-------d~~i~~w~~ 277 (583)
=.|-.+.. |+-.+ +..|.-|+++.. .+.+.+ .-| ...|..-..+++.++++..+- .|.+.+|..
T Consensus 112 WkWis~~~--L~lVT-~taVyHWs~~~~s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 187 (365)
T 2xzh_A 112 WKWISLNT--VALVT-DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 187 (365)
T ss_dssp EEECSSSE--EEEEE-SSEEEEEESSTTCCCEEEE-ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET
T ss_pred EEecCCCe--EEEEc-CCcEEEEcccCCCCCceee-ecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEee
Confidence 78877765 44443 347999999753 333333 222 356777778888898776542 377889966
Q ss_pred cCCCCCceeeEEeccCCCCCeeEEEe--eCCCCEEEEeeC---CCcEEEEEcccc-ccceeeccchhhhhhhhhhcchhc
Q psy14906 278 DKADGNGRLLRIREGHSAPPNYIQFY--GNSSDNILSAAG---DSTLRIFNTKSE-TSNKNLGIASANRNNLKRKNRLEK 351 (583)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
+.+..+.+++|.+....+... +.....+..+.. .+.+++.++... .....+.
T Consensus 188 -----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~----------------- 245 (365)
T 2xzh_A 188 -----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----------------- 245 (365)
T ss_dssp -----TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-----------------
T ss_pred -----cccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-----------------
Confidence 345667778885433222221 101112232222 145666665332 0000000
Q ss_pred cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe
Q psy14906 352 MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY 431 (583)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 431 (583)
.-. + +..+.++ ....-..++..++.-..++.-+
T Consensus 246 -----------kk~---------------------v-----------di~fppe----a~~DFPVamqvs~kygviyviT 278 (365)
T 2xzh_A 246 -----------KKA---------------------V-----------DVFFPPE----AQNDFPVAMQISEKHDVVFLIT 278 (365)
T ss_dssp -----------CEE---------------------E-----------EECCCTT----CTTCCEEEEEEETTTTEEEEEE
T ss_pred -----------ccc---------------------c-----------eeeCCcc----ccCCceEEEEecccCCEEEEEe
Confidence 000 0 0000010 1114466888899888999999
Q ss_pred cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 432 SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 432 ~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
.-|.|++||++++.++..- +-....|..-+.+....-++.....|.|.--.++..
T Consensus 279 K~G~ihlyDleTgt~i~~n-----rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCIYMN-----RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CCcEEEEEEcccCcEEEEe-----ccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 9999999999999988765 344555555555444444555556676665555544
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.30 E-value=0.0021 Score=58.86 Aligned_cols=259 Identities=11% Similarity=0.041 Sum_probs=140.1
Q ss_pred CCCceEEEEeeCCeEEEEecCCc---EEEeec-CCCCCCeEEEEeeC-eEEEEEcCCeEEEEeccceeeeeec---ccCc
Q psy14906 41 RRKETLFVTCVGKAFHVYGCNHF---KLLSVS-PQHEDDITCLSSDF-FHIYTSANNIIYAWRRGIDIVGTYK---GHTS 112 (583)
Q Consensus 41 ~~~~~~i~~~~~~~i~v~d~~~~---~~~~~~-~~h~~~v~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~---~h~~ 112 (583)
......++.+..+.|.. ..+.+ +.+..- ......+.++++++ .+.+++..+.|..-.-.++.-.... .+.+
T Consensus 44 ~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~ 122 (327)
T 2xbg_A 44 IDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPG 122 (327)
T ss_dssp SSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTTCSS
T ss_pred CCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccCCCC
Confidence 33333444556665533 33323 444321 22345678888865 5555666776655332333222222 2334
Q ss_pred cEEEE--ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEE
Q psy14906 113 PVHLI--LPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHN 190 (583)
Q Consensus 113 ~v~~i--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~ 190 (583)
.+..+ .+++..++.+ .+|.|.. ..+.|+.-..... .....+..+++.+++.+++++...+..+-+|
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQ----------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEEC----------SCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeec----------CCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 45665 4555555554 4564422 2233544443331 3456788999999998887765443333333
Q ss_pred c--cCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhc---cccceEEEEEecCCCEEEE
Q psy14906 191 I--LTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKA---HRKVVTGAHFLYNEPLLVT 265 (583)
Q Consensus 191 ~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s 265 (583)
- .+.+.+. ......+..+.+.+++. ++ ..+.+|.+++.+...++.-..+... +...+.++.+.+++..++.
T Consensus 191 ~gG~tW~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (327)
T 2xbg_A 191 PGQTAWEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA 266 (327)
T ss_dssp TTCSSCEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred CCCCceeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence 2 2223331 23346788999999987 44 4455788877753334332222111 2345889999988877666
Q ss_pred EeCCCeEEEEEccCCCCCceeeEEec---cCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEc
Q psy14906 266 SSPDNTLKLWIFDKADGNGRLLRIRE---GHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNT 324 (583)
Q Consensus 266 ~~~d~~i~~w~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 324 (583)
+. ++.+ .+..|. ++.-..+. .....+..+.|.+ +..++.++.+|.|.-++-
T Consensus 267 g~-~g~i-~~S~Dg----G~tW~~~~~~~~~~~~~~~v~~~~--~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 267 GG-AGAL-LCSQDG----GQTWQQDVDVKKVPSNFYKILFFS--PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp ES-TTCE-EEESST----TSSCEECGGGTTSSSCCCEEEEEE--TTEEEEECSTTEEEEECC
T ss_pred eC-CCeE-EEeCCC----CcccEEcCccCCCCCCeEEEEEEC--CCceEEEcCCceEEEEcC
Confidence 54 6655 332231 22222222 2345678899874 445777778898776653
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.29 E-value=0.0012 Score=67.70 Aligned_cols=236 Identities=9% Similarity=0.015 Sum_probs=135.2
Q ss_pred EEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEE-EEeCCCeEEEEEccCCCCCceeeEEeccCCCCC
Q psy14906 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLV-TSSPDNTLKLWIFDKADGNGRLLRIREGHSAPP 297 (583)
Q Consensus 219 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v 297 (583)
+|+... ...|+..++...+....+ .....+..++|.+.+..|+ +-...+.|+.++++...........+......+
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred cccccc-ccceeEeeccCCcceeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 344333 356888888765433323 2345678999998655554 444567788786653211112223333344566
Q ss_pred eeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccE
Q psy14906 298 NYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNI 377 (583)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (583)
..|++.+..+++.++-...+.|.+.++..... ..+.
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~------------------------------------------- 509 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF------------------------------------------- 509 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEE-------------------------------------------
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEE-------------------------------------------
Confidence 78999864444555555677888888764321 1110
Q ss_pred EEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec--CceEEEEEcccCccccccCCCCC
Q psy14906 378 AAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS--SGHVDRFNIQSGAHRGSYGHDNQ 455 (583)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~ 455 (583)
. ........|+++|.+.+|+.... .+.|...++........+
T Consensus 510 -------------~------------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv----- 553 (791)
T 3m0c_C 510 -------------R------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----- 553 (791)
T ss_dssp -------------E------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-----
T ss_pred -------------e------------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-----
Confidence 0 00035778999998666666553 267888888654443333
Q ss_pred CCcccCeeEEEEeCCCcEEEEee-cCCcEEEEEccCCCCCceEEeecc---CCeeeEEeccCCcEEEEE-eCCceEEEEE
Q psy14906 456 PGHVGGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQTGKPPLRSIKLD---NGISFFRTHQESSMLAVC-LDDFTVNIID 530 (583)
Q Consensus 456 ~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~-~~dg~i~i~d 530 (583)
...-.....|++++.+..|+.+. ....|...++... .....+... .....|++. +..|+.. ...+.|...|
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~--~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC--ceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 23345788999997766665554 4567888888765 333333321 234456653 3344444 4567888888
Q ss_pred ccccceEEeec
Q psy14906 531 IDTCTIIRKLS 541 (583)
Q Consensus 531 ~~~~~~~~~~~ 541 (583)
..+|+.+..+.
T Consensus 630 k~tG~~~~~l~ 640 (791)
T 3m0c_C 630 RLTGSDVNLLA 640 (791)
T ss_dssp TTTCCCCEEEE
T ss_pred CCCCcceEEee
Confidence 77776555543
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.0011 Score=63.16 Aligned_cols=161 Identities=11% Similarity=0.070 Sum_probs=95.6
Q ss_pred CceEEEEccCC-cEEEEEecCceEEEEEcc-------cCcc-----------ccccCCCCCCCcccCeeEEEEeCCCcEE
Q psy14906 414 KPTCVYITHCG-NFVLIGYSSGHVDRFNIQ-------SGAH-----------RGSYGHDNQPGHVGGVRGVVSDNLNQIV 474 (583)
Q Consensus 414 ~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~-------~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l 474 (583)
....++++|++ .++++-..++.|+.+|+. ++.. ...+.. .+.......++|+|++++|
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~---~~~~~~p~~ia~~p~G~~l 324 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT---IADPSWEFQIFIHPTGKYA 324 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE---CSSSSCCEEEEECTTSSEE
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe---cCCCCCceEEEEcCCCCEE
Confidence 45678899954 555566678889999998 5543 011100 1233456899999999954
Q ss_pred -EEeecCCcEEEEEccCCCCCc--eEEeecc----------------CCee-eEEec-------cCCcEEEEEeCCceEE
Q psy14906 475 -ISGGNDQTVKVWHFKQTGKPP--LRSIKLD----------------NGIS-FFRTH-------QESSMLAVCLDDFTVN 527 (583)
Q Consensus 475 -~s~~~dg~i~iwd~~~~~~~~--~~~~~~~----------------~~v~-~~~~s-------~~~~~l~~~~~dg~i~ 527 (583)
++-.....|+.++........ ...+... .... .++.. ++|.++++-...++|+
T Consensus 325 YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr 404 (496)
T 3kya_A 325 YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVR 404 (496)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEE
T ss_pred EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEE
Confidence 444566788887765431111 0122111 1233 34443 4566666666678899
Q ss_pred EEEccccceEEeeccc------------------------ccceeeEEecCC-CcEEEEEeCCCeEEEEeCCCcccc
Q psy14906 528 IIDIDTCTIIRKLSGH------------------------MGQLTDADFSPD-SRWLITASMDCTIRVWDIPSSQLI 579 (583)
Q Consensus 528 i~d~~~~~~~~~~~~h------------------------~~~v~~l~~s~d-~~~l~s~~~d~~i~vw~~~~~~~~ 579 (583)
.++ .+|.. .++.+. -.....|+++++ +.+.++=.....|+.++++.....
T Consensus 405 ~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 405 KVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 998 45543 333221 123668999997 766666666789999998765544
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.0016 Score=62.11 Aligned_cols=233 Identities=12% Similarity=0.041 Sum_probs=134.8
Q ss_pred cccEEEEEe-CCCceEEEEeeCCeEEEEecCCcEEEeecCC---CCCCeEEEEe---------eCe-EEEEEcCC-----
Q psy14906 32 LPVVARFIR-RRKETLFVTCVGKAFHVYGCNHFKLLSVSPQ---HEDDITCLSS---------DFF-HIYTSANN----- 92 (583)
Q Consensus 32 ~~~~~~~~p-~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~---h~~~v~~~~~---------~~~-~~~~~~~~----- 92 (583)
.|..+++.| +...++++....+.|++.|++++.+...... .......+++ +++ ++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899988 4556555555567899999999877765543 2234677777 455 55555443
Q ss_pred --eEEEEeccc--eee-----eeec--ccCccEEEEccCCCEEE-EEeCCCcEEEEEcC-------CCcE----------
Q psy14906 93 --IIYAWRRGI--DIV-----GTYK--GHTSPVHLILPFGPHLI-SVDEESNVKVWDIK-------AEET---------- 143 (583)
Q Consensus 93 --~i~vw~~~~--~~~-----~~~~--~h~~~v~~is~~~~~l~-s~~~dg~i~iwd~~-------~~~~---------- 143 (583)
.|.+.+... ... +.+. .|...+ +++|++.+|+ +-..++.|..+|++ ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~gi-avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGA-TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCE-EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEE-EEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366665432 221 1222 233333 4578555555 44567789999987 5543
Q ss_pred -EEEe-eccCCceEEecccCCcceEEEeeCCCCCEEEEE-ecCCeEEEEEccC--Cce--eEEEecc---C---------
Q psy14906 144 -YLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVG-LSNKKIILHNILT--DES--LMEFIQT---W--------- 204 (583)
Q Consensus 144 -~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iw~~~~--~~~--~~~~~~~---~--------- 204 (583)
...+ .. ........|+|+|+|+.|.++ +..+.|+.++... +.. ...+.+. .
T Consensus 299 ~~~~l~~~----------~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~ 368 (496)
T 3kya_A 299 TFKQLFTI----------ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTE 368 (496)
T ss_dssp TEEEEEEC----------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred ccceeEec----------CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccc
Confidence 1121 11 223456899999999965444 5567888866542 221 1222221 0
Q ss_pred ---CCeE-EEEEe-------cCCCCEEEEEcCCCcEEEEeCCCCeehhhhhh-------------c----------cccc
Q psy14906 205 ---GPVT-ALSFR-------TDGPPMMVSGSNTGHLTVWNLEDRQVENQIKK-------------A----------HRKV 250 (583)
Q Consensus 205 ---~~v~-~~~~~-------~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------~----------~~~~ 250 (583)
.... .+... +++. ++++-..+..|+.++. ++.. .++.. + .-..
T Consensus 369 a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~ 445 (496)
T 3kya_A 369 ARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRD 445 (496)
T ss_dssp CBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSS
T ss_pred cccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCCCCchhhhhcCC
Confidence 1234 34444 4555 6666677888999984 4432 22200 1 1124
Q ss_pred eEEEEEecC-CCEEEEEeCCCeEEEEEcc
Q psy14906 251 VTGAHFLYN-EPLLVTSSPDNTLKLWIFD 278 (583)
Q Consensus 251 v~~~~~~~~-~~~l~s~~~d~~i~~w~~~ 278 (583)
...|++.++ +.++++=...+.|+.++++
T Consensus 446 P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 446 VSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 678999986 6665555566788888664
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.22 E-value=2.4e-05 Score=79.58 Aligned_cols=243 Identities=9% Similarity=0.010 Sum_probs=133.9
Q ss_pred CCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEee
Q psy14906 226 TGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS-PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYG 304 (583)
Q Consensus 226 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 304 (583)
...|+..++...+....+ . ....+..++|.+.+..|+.+. ..+.|+.++++...........+......+..+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~-~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLI-P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCS-C-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeee-c-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 357888888876554444 2 234567889998776666554 4577888866531000111111111122345677765
Q ss_pred CCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCC
Q psy14906 305 NSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGK 384 (583)
Q Consensus 305 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (583)
..+.++++-...+.|.++++........+.
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-------------------------------------------------- 492 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------------------------------------------- 492 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECC--------------------------------------------------
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEe--------------------------------------------------
Confidence 344455554556778887765432111000
Q ss_pred ceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEec--CceEEEEEcccCccccccCCCCCCCcccCe
Q psy14906 385 NKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYS--SGHVDRFNIQSGAHRGSYGHDNQPGHVGGV 462 (583)
Q Consensus 385 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v 462 (583)
........++++|.+.+|+.... .+.|.++++......... ...-...
T Consensus 493 -------------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~-----~~~l~~P 542 (699)
T 1n7d_A 493 -------------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----TENIQWP 542 (699)
T ss_dssp -------------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-----CSSCSSC
T ss_pred -------------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-----eCCCCCc
Confidence 00034567888887666665543 267887776533222211 1223456
Q ss_pred eEEEEeCCCcEE-EEeecCCcEEEEEccCCCCCceEEeec---cCCeeeEEeccCCcEEEEEeCCceEEEEEccccceEE
Q psy14906 463 RGVVSDNLNQIV-ISGGNDQTVKVWHFKQTGKPPLRSIKL---DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIR 538 (583)
Q Consensus 463 ~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 538 (583)
..|+++|++..| ++-...+.|..+++... .....+.. ......+++..+ .++++....+.|..++..+++.+.
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~--~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSS--CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCC--ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 789999876544 44456678999998754 33322221 123445566443 444455566899999998888877
Q ss_pred eecccccceeeEEec
Q psy14906 539 KLSGHMGQLTDADFS 553 (583)
Q Consensus 539 ~~~~h~~~v~~l~~s 553 (583)
.+.........|++.
T Consensus 620 ~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 620 LLAENLLSPEDMVLF 634 (699)
T ss_dssp CCCTTCSSCCCCCBC
T ss_pred EeecCCCCCcEEEEe
Confidence 765433345555543
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.21 E-value=0.0027 Score=58.30 Aligned_cols=268 Identities=14% Similarity=0.177 Sum_probs=164.3
Q ss_pred CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEE
Q psy14906 130 ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTA 209 (583)
Q Consensus 130 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~ 209 (583)
+..|.|-|+.++..+.+.+.. . -+.-.+|..+.||.-. ..++.|+|+++.+.++.+.-. ..|.-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----------A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~Vvf 110 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----------A----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTF 110 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----------C----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCE
T ss_pred CCeEEEEECCCCCcceecccc----------c----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceE
Confidence 447888888886655444321 1 2344678888777765 679999999999999988877 46777
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEeCCCC-eehhhhhhcc----ccceEEEEEecCCCEEEEEeC-------CCeEEEEEc
Q psy14906 210 LSFRTDGPPMMVSGSNTGHLTVWNLEDR-QVENQIKKAH----RKVVTGAHFLYNEPLLVTSSP-------DNTLKLWIF 277 (583)
Q Consensus 210 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~-------d~~i~~w~~ 277 (583)
=.|-.+.. |+-.+ +..|.-|+++.. .+.+.+ .-| ...|..-..+++.++++..|- .|.+.+|..
T Consensus 111 WkWis~~~--l~lVT-~taVyHWsi~~~s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 111 WKWISLNT--VALVT-DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (494)
T ss_dssp EEEEETTE--EEEEC-SSEEEEEESSSSCCCEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEecCCCe--EEEEc-CCeeEEecccCCCCchhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence 77877664 44444 357999999753 333333 222 356777788899998775542 377889966
Q ss_pred cCCCCCceeeEEeccCCCCCeeEEEee--CCCCEEEEeeC---CCcEEEEEccccc-cceeeccchhhhhhhhhhcchhc
Q psy14906 278 DKADGNGRLLRIREGHSAPPNYIQFYG--NSSDNILSAAG---DSTLRIFNTKSET-SNKNLGIASANRNNLKRKNRLEK 351 (583)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
+ .+..+.+.||.+....+.... .....+..+.. .+.+++.++.... ....+
T Consensus 187 e-----r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f------------------ 243 (494)
T 1bpo_A 187 D-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF------------------ 243 (494)
T ss_dssp T-----TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC------------------
T ss_pred c-----ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc------------------
Confidence 3 455677788865443333221 00123333332 2566666664320 00000
Q ss_pred cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe
Q psy14906 352 MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY 431 (583)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 431 (583)
..-.. +..+.+ .....-..++..++.-..++.-+
T Consensus 244 ----------~kk~v--------------------------------dv~fpp----e~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 244 ----------PKKAV--------------------------------DVFFPP----EAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp ----------CCEEE--------------------------------ECCCCT----TSTTCCEEEEEEETTTTEEEEEE
T ss_pred ----------cceee--------------------------------eeeCCc----ccccCceeEEEecccCCEEEEEe
Confidence 00000 000000 01113466888999989999999
Q ss_pred cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC
Q psy14906 432 SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT 491 (583)
Q Consensus 432 ~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 491 (583)
.-|.|++||++++.++..- +-....|..-+......-++.....|.|.--.++..
T Consensus 278 K~G~i~lyDleTgt~i~~n-----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMN-----RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred cCceEEEEecccceeeeee-----cccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 9999999999999988766 344555665555555555666667777766666554
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.20 E-value=0.0016 Score=66.81 Aligned_cols=233 Identities=8% Similarity=-0.061 Sum_probs=132.1
Q ss_pred EEEEEcCCeEEEEeccceeeeeecccCccEEEE--ccCCCEEEEE-eCCCcEEEEEcCCCc----EEEEeeccCCceEEe
Q psy14906 85 HIYTSANNIIYAWRRGIDIVGTYKGHTSPVHLI--LPFGPHLISV-DEESNVKVWDIKAEE----TYLELSFDNDTFKIM 157 (583)
Q Consensus 85 ~~~~~~~~~i~vw~~~~~~~~~~~~h~~~v~~i--s~~~~~l~s~-~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~ 157 (583)
++..+....|+..++.+.....+......+..| .+.+..|+.+ ...+.|+.+++.... ....+.
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--------- 467 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--------- 467 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---------
T ss_pred ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe---------
Confidence 444555567777776543333333333444555 5544555544 445778888877531 122221
Q ss_pred cccCCcceEEEeeCCCCCEEEE-EecCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-CcEEEEeCC
Q psy14906 158 GKRWNSCVNVLEPSPVVDIIGV-GLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-GHLTVWNLE 235 (583)
Q Consensus 158 ~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~vwd~~ 235 (583)
........|++.+.++.|.. -...+.|.+.++........+.........|++.|.+.+++++-... +.|...++.
T Consensus 468 --~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 468 --RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp --SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred --cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 23455678999887765554 45568999999874443333334445689999999866344444333 679999987
Q ss_pred CCeehhhhhhccccceEEEEEecCCCEEEEEeC-CCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee
Q psy14906 236 DRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP-DNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA 314 (583)
Q Consensus 236 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 314 (583)
.... ..+....-.....|++.+.+..|+.+.. .+.|...+++.. ....+......-.....|++. .+.++++-.
T Consensus 546 G~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~--~~~~v~~~~~~l~~P~glav~--~~~lYwtD~ 620 (791)
T 3m0c_C 546 GVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVF--EDKVFWTDI 620 (791)
T ss_dssp SCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTTTTSSEEEEEEE--TTEEEEEET
T ss_pred CCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC--ceEEEecCCCccCCCCEEEEe--CCEEEEEEC
Confidence 4433 3331233357889999987776666653 456777755422 222222211122234566664 344444545
Q ss_pred CCCcEEEEEccccccceee
Q psy14906 315 GDSTLRIFNTKSETSNKNL 333 (583)
Q Consensus 315 ~dg~i~iwd~~~~~~~~~~ 333 (583)
..+.|...|..+++....+
T Consensus 621 ~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 621 INEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTTCCCCEEE
T ss_pred CCCEEEEEeCCCCcceEEe
Confidence 6678888887777655444
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.16 E-value=0.0033 Score=55.35 Aligned_cols=224 Identities=8% Similarity=0.090 Sum_probs=147.6
Q ss_pred EEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe-eCeEEEEEcCCeEEEEeccc--eeeeeecccC---
Q psy14906 38 FIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS-DFFHIYTSANNIIYAWRRGI--DIVGTYKGHT--- 111 (583)
Q Consensus 38 ~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~~~~i~vw~~~~--~~~~~~~~h~--- 111 (583)
.+|. ..+|+.-.+..+.|+|+++.+.++...- .+.|.--.+ +.+.+.--.+..|+-|++.+ .+.+.+..|.
T Consensus 74 MnP~--~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 74 MNPA--SKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp ECSS--SSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred eCCC--ccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcc
Confidence 4555 3456666799999999999999877664 456666666 77777777899999999853 6677777653
Q ss_pred -ccEEEE--ccCCCEEEEEeC-------CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCC---CCEEE
Q psy14906 112 -SPVHLI--LPFGPHLISVDE-------ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPV---VDIIG 178 (583)
Q Consensus 112 -~~v~~i--s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~ 178 (583)
..|... +++.++++..+- .|.+.+|..+.+ .-+.++ +|......+.+..+ .++++
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie-----------Ghaa~F~~~~~~g~~~~~~lf~ 218 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-----------GHAASFAQFKMEGNAEESTLFC 218 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC-----------CSEEEEEEECCTTCSSCEEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceee-----------eeeeeeEEEecCCCCCCceEEE
Confidence 334443 888898876432 377889988764 334444 66555544444321 22444
Q ss_pred EEecC---CeEEEEEccCC---ce-----eEEEe----ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhh
Q psy14906 179 VGLSN---KKIILHNILTD---ES-----LMEFI----QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI 243 (583)
Q Consensus 179 ~~~~d---~~i~iw~~~~~---~~-----~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 243 (583)
.+... +.++|.++... .. ...+. ...+-.-++..++.-. +++.-+.-|.+++||++++.++..-
T Consensus 219 fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 219 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEEEe
Confidence 44332 57888888432 11 11111 1234556778887766 8888899999999999999988776
Q ss_pred hhccccceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy14906 244 KKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFD 278 (583)
Q Consensus 244 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 278 (583)
+-..+.|...+...+..-++.....|.|.--.++
T Consensus 298 -rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 298 -RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp -ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred -ccCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 4556666665655555556666677876666554
No 304
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.09 E-value=0.015 Score=60.41 Aligned_cols=461 Identities=10% Similarity=0.026 Sum_probs=237.4
Q ss_pred ccceeeeeeeee-eecCcccEEEEEeCCCceEEEEeeCCeEEEEecCCcEEEeecC-CCCCCeEEEEee--CeEEEEEcC
Q psy14906 16 SKIFLRHRALGY-VSNHLPVVARFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSP-QHEDDITCLSSD--FFHIYTSAN 91 (583)
Q Consensus 16 ~~~~~~~~~~g~-~~~~~~~~~~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~~~~~ 91 (583)
.+-++.|+-+.. .++.... +...|.+..+-+++.++ +..||-.+.+...... .....|.++..| +.+-+++.
T Consensus 6 ~~~~~~f~~~~~gl~~n~V~--~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~- 81 (758)
T 3ott_A 6 KVNYQQFDNIYLGAEASVVS--CFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTD- 81 (758)
T ss_dssp ---CCCCEEECCCSSCCCEE--EEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEET-
T ss_pred CcchhhhhccccccccceEE--EEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeC-
Confidence 344555554431 2233333 33447777766666555 6677854433222111 134568888764 45666654
Q ss_pred CeEEEEeccceeeeee-cccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEee
Q psy14906 92 NIIYAWRRGIDIVGTY-KGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEP 170 (583)
Q Consensus 92 ~~i~vw~~~~~~~~~~-~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 170 (583)
+.+..+|......... ......|.++..++..|..++.+ -|..+|..+++... +..... ......|.++..
T Consensus 82 ~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~-~~~~~~------~l~~~~i~~i~~ 153 (758)
T 3ott_A 82 NGILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTS-FDTRRN------GLPNNTIYSIIR 153 (758)
T ss_dssp TEEEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEE-ECHHHH------CCSCSCEEEEEE
T ss_pred CCeEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEE-eccCCC------CcCCCeEEEEEE
Confidence 4578899654322221 11233576663233456666655 68888987765432 210000 012456888888
Q ss_pred CCCCCEEEEEecCCeEEEEEccCCceeEEEecc------CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhh
Q psy14906 171 SPVVDIIGVGLSNKKIILHNILTDESLMEFIQT------WGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIK 244 (583)
Q Consensus 171 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 244 (583)
..++.+.+ |+.+ -+..++..+++.. .+... ...|.++...+++. .|..|+. +-+..+|..+++.....
T Consensus 154 d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~-~lWigt~-~Gl~~~~~~~~~~~~~~- 227 (758)
T 3ott_A 154 TKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQ-CVWIGTE-GYLFQYFPSTGQIKQTE- 227 (758)
T ss_dssp CTTCCEEE-EETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTT-EEEEEEE-EEEEEEETTTTEEEEEE-
T ss_pred cCCCCEEE-EeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCC-EEEEEEC-CCCeEEcCCCCeEEecc-
Confidence 88887665 4444 4778887765432 22211 12488888877765 4455554 45888998776543211
Q ss_pred hccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEec-----cCCCCCeeEEEeeCCCCEEEEeeCCCcE
Q psy14906 245 KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIRE-----GHSAPPNYIQFYGNSSDNILSAAGDSTL 319 (583)
Q Consensus 245 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i 319 (583)
.-....|.++....+|.+.+ |..+| +.++ +............. -....|.++.... ++ .|..|+..| +
T Consensus 228 ~l~~~~i~~i~~d~~g~lWi-gT~~G-l~~~--~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g-~lWiGT~~G-l 300 (758)
T 3ott_A 228 AFHNNSIKSLALDGNGDLLA-GTDNG-LYVY--HNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-EH-NIWLGTDYG-I 300 (758)
T ss_dssp EEEEEEEEEEEECTTCCEEE-EETTE-EEEE--CCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-TC-CEEEEESSS-E
T ss_pred CCCCCeEEEEEEcCCCCEEE-EeCCc-eeEE--ecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-CC-CEEEEeCCc-c
Confidence 12234688888877777554 44444 6666 43222211111000 0123466665542 33 455555555 4
Q ss_pred EEEEccccccceeeccchhhhhhhhhhcchhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccc
Q psy14906 320 RIFNTKSETSNKNLGIASANRNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDD 399 (583)
Q Consensus 320 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (583)
.++... . ..+.+. ...
T Consensus 301 ~~~~~~-~-~~~~~~---------------------------------------------------------~~~----- 316 (758)
T 3ott_A 301 SLSRYN-S-ALQFIP---------------------------------------------------------ISQ----- 316 (758)
T ss_dssp EEECCC-C--CEEEE---------------------------------------------------------HHH-----
T ss_pred cccccC-C-ceeEEe---------------------------------------------------------ccc-----
Confidence 433221 1 000000 000
Q ss_pred eeeecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEcccCcc--ccccCCC--CCCCcccCeeEEEEeCCCcEEE
Q psy14906 400 MFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAH--RGSYGHD--NQPGHVGGVRGVVSDNLNQIVI 475 (583)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~ 475 (583)
.........+.++....+|.+-+. +.+| +..++..++.. ...+... ........|.++.-.+++++.+
T Consensus 317 ------~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi 388 (758)
T 3ott_A 317 ------ITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI 388 (758)
T ss_dssp ------HSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE
T ss_pred ------CCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE
Confidence 000000135777777777765554 4555 66676554321 1111100 0011234688998888887554
Q ss_pred EeecCCcEEEEEccCCCCCceEEe--e-----ccCCeeeEEeccCCcEEEEEeCCceEEEEEcccc-----ceE---Eee
Q psy14906 476 SGGNDQTVKVWHFKQTGKPPLRSI--K-----LDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTC-----TII---RKL 540 (583)
Q Consensus 476 s~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~ 540 (583)
|. ++-+..||..++ +..... . ....|.++...++|.+ .+|+..+-+..+|.++. ... ..+
T Consensus 389 -gt-~~GL~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 463 (758)
T 3ott_A 389 -AT-DGSINRYDYATR--QFIHYNIVDNTGTYNTNWTYYIFEDTAGQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNY 463 (758)
T ss_dssp -EE-TTEEEEEETTTT--EEEEEEEECCC--CBSSSEEEEEECTTSEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEE
T ss_pred -Ee-CCcHhhcCcCCC--cEEEeecCCCcCCCCCceEEEEEEcCCCCE-EEEECCCceEEEccccccccCCcceeccccc
Confidence 34 356888998765 332211 1 1234677777666654 44666666888886531 111 111
Q ss_pred c---c-cccceeeEEecCCCcEEEEEeCCCeEEEEeCCCccc
Q psy14906 541 S---G-HMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQL 578 (583)
Q Consensus 541 ~---~-h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~~ 578 (583)
. + ....|.++...++|++.+.++..+-|..+|..+++.
T Consensus 464 ~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 464 SVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV 505 (758)
T ss_dssp CGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred ccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence 1 1 123588898888888766333334477888876654
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.03 E-value=0.0012 Score=58.66 Aligned_cols=157 Identities=10% Similarity=-0.002 Sum_probs=96.0
Q ss_pred ceEEEE---ccCCcEEEEEec-------------CceEEEEEcc---cCccccccCCCCC-CC-------cccCeeEEEE
Q psy14906 415 PTCVYI---THCGNFVLIGYS-------------SGHVDRFNIQ---SGAHRGSYGHDNQ-PG-------HVGGVRGVVS 467 (583)
Q Consensus 415 i~~~~~---s~~~~~l~~~~~-------------dg~i~i~d~~---~~~~~~~~~~~~~-~~-------h~~~v~~~~~ 467 (583)
+..+.+ .|+++++++... +..|..||+. +++.......... .+ -......++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 467888 688777776442 5779999998 7776644321000 00 1134889999
Q ss_pred eCCCcEEEEeecC-CcEEEEEccCCCCCceEEe-ecc-----CCeeeEEeccCCcEEEEEeCCceEEEEEccccce--EE
Q psy14906 468 DNLNQIVISGGND-QTVKVWHFKQTGKPPLRSI-KLD-----NGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI--IR 538 (583)
Q Consensus 468 s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~-~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~ 538 (583)
.++|+..++++.. +.|...+.+.. ...... ... ...+.++++|+|+.|++....|.+..+|+.+... +.
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~ 222 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP 222 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE
T ss_pred CCCCCEEEeCCCCCCeEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec
Confidence 9999999988877 77666665543 222111 111 1367899999999888887799999999885432 21
Q ss_pred eec-ccc---cceeeE-EecCCCcE-EEEEeCCCeEEEEeC
Q psy14906 539 KLS-GHM---GQLTDA-DFSPDSRW-LITASMDCTIRVWDI 573 (583)
Q Consensus 539 ~~~-~h~---~~v~~l-~~s~d~~~-l~s~~~d~~i~vw~~ 573 (583)
.-. +.. .....| .--.+|+. |++.+..+.+.+.+-
T Consensus 223 ~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 223 VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECS
T ss_pred ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECC
Confidence 110 211 112332 33347777 555556666555543
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.98 E-value=0.0013 Score=58.49 Aligned_cols=159 Identities=13% Similarity=0.218 Sum_probs=109.0
Q ss_pred CCceEEEEccCCcEEEEEe-cCceEEEEEcccCccccccCCCCCC--C-cccCeeEEEE---eCCCcEEEEee-------
Q psy14906 413 SKPTCVYITHCGNFVLIGY-SSGHVDRFNIQSGAHRGSYGHDNQP--G-HVGGVRGVVS---DNLNQIVISGG------- 478 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~--~-h~~~v~~~~~---s~~~~~l~s~~------- 478 (583)
....++.|++....+.+++ ..|.|..|+...+...... .+... + ....+..+.+ .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~-~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV-IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC-CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe-cCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 4567889988655555555 7899999998755433221 11001 1 1224689999 68888877543
Q ss_pred ------cCCcEEEEEcc---CCCCCceEEeecc--------------CCeeeEEeccCCcEEEEEeCC-ceEEEEEcccc
Q psy14906 479 ------NDQTVKVWHFK---QTGKPPLRSIKLD--------------NGISFFRTHQESSMLAVCLDD-FTVNIIDIDTC 534 (583)
Q Consensus 479 ------~dg~i~iwd~~---~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~ 534 (583)
.+..|..+|+. ++ +.+...... .....++..++|+..++++.. +.|...+.+..
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg--~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENS--KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTC--CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccCCCCEEEEEcCCcCCCC--CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26779999998 66 565554421 247889999999999988888 88777776643
Q ss_pred ceEEee--c----ccccceeeEEecCCCcEEEEEeCCCeEEEEeCCC
Q psy14906 535 TIIRKL--S----GHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575 (583)
Q Consensus 535 ~~~~~~--~----~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~ 575 (583)
. +..+ . ......+.|+++|||+.|+....++.|..+|+.+
T Consensus 170 ~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 T-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp C-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred E-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2 2221 1 1122367999999999988887799999999874
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.98 E-value=0.00013 Score=74.21 Aligned_cols=160 Identities=9% Similarity=-0.005 Sum_probs=96.2
Q ss_pred ceEEEEccCCc-EEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec--CCcEEEEEccCC
Q psy14906 415 PTCVYITHCGN-FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN--DQTVKVWHFKQT 491 (583)
Q Consensus 415 i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~ 491 (583)
+..+++.+.+. ++++-...+.|.++++........+ .........++++|.+.+|+.+.. .+.|...++...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 45677775544 4444455678988887654433332 222345678899997655554432 267887777654
Q ss_pred CCCceEEee-ccCCeeeEEeccCCcEEEEEe-CCceEEEEEccccceEEeec--ccccceeeEEecCCCcEEEEEeCCCe
Q psy14906 492 GKPPLRSIK-LDNGISFFRTHQESSMLAVCL-DDFTVNIIDIDTCTIIRKLS--GHMGQLTDADFSPDSRWLITASMDCT 567 (583)
Q Consensus 492 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~s~~~d~~ 567 (583)
....... .-.....|+++|++..|+.+. ..+.|..+++........+. ........|++..+ .++++....+.
T Consensus 530 --~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~ 606 (699)
T 1n7d_A 530 --DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA 606 (699)
T ss_dssp --CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred --CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence 2222221 224577899999876555554 56789999987543322222 12233456666544 45555566789
Q ss_pred EEEEeCCCccccccc
Q psy14906 568 IRVWDIPSSQLIDCF 582 (583)
Q Consensus 568 i~vw~~~~~~~~~~~ 582 (583)
|..++..+|+.+..+
T Consensus 607 V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 607 IFSANRLTGSDVNLL 621 (699)
T ss_dssp EEEEETTTEEEEECC
T ss_pred EEEEEccCCCceEEe
Confidence 999998888776654
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.94 E-value=0.003 Score=58.39 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=61.9
Q ss_pred cceEEEeeCCCCCEEEEEecCCeEEEEEccCCce--eEEEe---ccCCCeEEEEEecC---CCCEEEEEcCC-----CcE
Q psy14906 163 SCVNVLEPSPVVDIIGVGLSNKKIILHNILTDES--LMEFI---QTWGPVTALSFRTD---GPPMMVSGSNT-----GHL 229 (583)
Q Consensus 163 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~d-----g~i 229 (583)
.....|+|.|+|+++++ ...|.|.+++ +++. +..+. ........|+|+|+ +..+.++-... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45679999999985554 5669999998 4432 22111 12356889999998 44244444332 568
Q ss_pred EEEeCCCCe-----e-hhhhh--hccccceEEEEEecCCCEEEEEe
Q psy14906 230 TVWNLEDRQ-----V-ENQIK--KAHRKVVTGAHFLYNEPLLVTSS 267 (583)
Q Consensus 230 ~vwd~~~~~-----~-~~~~~--~~~~~~v~~~~~~~~~~~l~s~~ 267 (583)
..|+...++ . +..+. .+.......++|.|||.+.++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 888876431 1 11121 01112336899999998777654
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.93 E-value=0.007 Score=55.88 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=39.9
Q ss_pred cCCeeeEEeccCCcEEEEEeCCceEEEEEccccce------EEeecccccceeeEEecCCCcEEEEEe
Q psy14906 502 DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI------IRKLSGHMGQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 502 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~h~~~v~~l~~s~d~~~l~s~~ 563 (583)
+.....++| .+|.++++....+.|...+++.... ...+-.-...+..+++.|||.++++..
T Consensus 267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 345667777 5677777666677888888764431 122212235789999999998776654
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.90 E-value=0.014 Score=53.63 Aligned_cols=225 Identities=8% Similarity=0.083 Sum_probs=149.1
Q ss_pred EEEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe-eCeEEEEEcCCeEEEEeccc--eeeeeecccC--
Q psy14906 37 RFIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS-DFFHIYTSANNIIYAWRRGI--DIVGTYKGHT-- 111 (583)
Q Consensus 37 ~~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~~~~i~vw~~~~--~~~~~~~~h~-- 111 (583)
-.+|.. .+|+.-.+..+.|+|+++.+.++...-. +.|.--.+ +.+.+.--.+..|+-|++.+ .+.+.+..|.
T Consensus 72 IMnP~~--~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L 148 (494)
T 1bpo_A 72 IMNPAS--KVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL 148 (494)
T ss_dssp EECSSS--SCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGG
T ss_pred eeCCCC--cEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhc
Confidence 355554 3466667999999999999998776643 35555555 78888888899999999853 6777777653
Q ss_pred --ccEEEE--ccCCCEEEEEeC-------CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCC---CCEE
Q psy14906 112 --SPVHLI--LPFGPHLISVDE-------ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPV---VDII 177 (583)
Q Consensus 112 --~~v~~i--s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l 177 (583)
..|... +++.++++..|- .|.+.+|+.+.+. -+.++ +|......+.+..+ .+++
T Consensus 149 ~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie-----------Ghaa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE-----------GHAASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC-----------CSEEEEEEEECTTCSSEEEEE
T ss_pred ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhe-----------eeeeeeEEEecCCCCCCceEE
Confidence 334443 889998885432 3678899887643 33444 66555544444322 1244
Q ss_pred EEEecC---CeEEEEEccCC--------ceeEEEe----ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh
Q psy14906 178 GVGLSN---KKIILHNILTD--------ESLMEFI----QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ 242 (583)
Q Consensus 178 ~~~~~d---~~i~iw~~~~~--------~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 242 (583)
+.+... +.++|.++... +....+. ...+-..++..++.-. +++.-+.-|.+++||++++.++..
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeee
Confidence 444432 68899888532 1111111 1234566788888776 888899999999999999998876
Q ss_pred hhhccccceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy14906 243 IKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFD 278 (583)
Q Consensus 243 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 278 (583)
- +-..+.|...+......-++.....|.|.--.++
T Consensus 296 n-rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 296 N-RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp E-ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred e-cccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 6 4556667666665555566666677776666554
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.88 E-value=0.0017 Score=59.24 Aligned_cols=111 Identities=10% Similarity=0.091 Sum_probs=69.4
Q ss_pred CCceEEEEccCCcEEEEEe-----------------cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEE
Q psy14906 413 SKPTCVYITHCGNFVLIGY-----------------SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVI 475 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 475 (583)
.....+.+.++|++.++.. ..|.|+.+|. ++. ..+ ...-...+.++|+||++.|+
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~-----~~~l~~pNGia~spDg~~lY 236 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVV-----AEGFDFANGINISPDGKYVY 236 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEE-----EEEESSEEEEEECTTSSEEE
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEe-----ecCCcccCcceECCCCCEEE
Confidence 4577888888888777653 1255666654 222 122 23345578999999998776
Q ss_pred Eee-cCCcEEEEEccCCC-CCceEEeeccCCeeeEEecc-CCcEEEEEeCC-ceEEEEEc
Q psy14906 476 SGG-NDQTVKVWHFKQTG-KPPLRSIKLDNGISFFRTHQ-ESSMLAVCLDD-FTVNIIDI 531 (583)
Q Consensus 476 s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d-g~i~i~d~ 531 (583)
.+. ..+.|..|++.... ....+.+......-.+++.+ +|++.+++..+ +.|..|+.
T Consensus 237 vadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 237 IAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 554 56889999987431 11223444456677889998 59887766544 34444443
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.87 E-value=0.014 Score=53.84 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=62.1
Q ss_pred CcceEEEeeCCCCCEEEEEecCCeEEEEEccCCc-eeEEEe---ccCCCeEEEEEecC---CCCEEEEEcC---C----C
Q psy14906 162 NSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDE-SLMEFI---QTWGPVTALSFRTD---GPPMMVSGSN---T----G 227 (583)
Q Consensus 162 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~---d----g 227 (583)
-.....|+|.|+|++++ +..+|.|++++ .+++ .+..+. ........|+|+|+ +..+.++-.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34568899999998555 45669999997 3454 222221 12256889999997 4424444332 3 5
Q ss_pred cEEEEeCCCC-------eeh-hhhhhccccceEEEEEecCCCEEEEEe
Q psy14906 228 HLTVWNLEDR-------QVE-NQIKKAHRKVVTGAHFLYNEPLLVTSS 267 (583)
Q Consensus 228 ~i~vwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~ 267 (583)
.|..|+.... +.+ ..+..........++|.|||.++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 6777877643 111 112111112346799999998777754
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.74 E-value=0.027 Score=51.97 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=42.3
Q ss_pred cCCeeeEEec-------cCCcEEEEEeCCceEEEEEcccc-ceE--Ee-ecccccceeeEEecCCCcEEEEEe
Q psy14906 502 DNGISFFRTH-------QESSMLAVCLDDFTVNIIDIDTC-TII--RK-LSGHMGQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 502 ~~~v~~~~~s-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~-~~~h~~~v~~l~~s~d~~~l~s~~ 563 (583)
+.....++|. .+|.++++....+.|...+++.. +.. .. +.+....+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 3457777773 56777777777788999888753 322 22 223345789999999998776654
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.67 E-value=0.0051 Score=55.53 Aligned_cols=146 Identities=10% Similarity=0.028 Sum_probs=70.4
Q ss_pred CCCEEEEEe-cC-----CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-----CcEEEEeCCCCe---
Q psy14906 173 VVDIIGVGL-SN-----KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-----GHLTVWNLEDRQ--- 238 (583)
Q Consensus 173 ~~~~l~~~~-~d-----~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~--- 238 (583)
++.+++.|+ .+ ..+.+||+.+.+-...-..............++. +++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDR-IYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCE-EEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 455666666 32 3688999877643221111111111112223555 77777754 468999988765
Q ss_pred e--hhhhhhccccceEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEE
Q psy14906 239 V--ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDN-----TLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNIL 311 (583)
Q Consensus 239 ~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 311 (583)
- +..+.. .......+. .++++++.|+.++ .+.+| +..+.....+..+...... .+++.. +++.++
T Consensus 93 W~~~~~~p~-~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~--d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv 164 (301)
T 2vpj_A 93 WYSVAPMNV-RRGLAGATT--LGDMIYVSGGFDGSRRHTSMERY--DPNIDQWSMLGDMQTAREG-AGLVVA--SGVIYC 164 (301)
T ss_dssp CEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEE--ETTTTEEEEEEECSSCCBS-CEEEEE--TTEEEE
T ss_pred eEECCCCCC-CccceeEEE--ECCEEEEEcccCCCcccceEEEE--cCCCCeEEECCCCCCCccc-ceEEEE--CCEEEE
Confidence 2 222211 111111222 2677777776543 45566 4444344444443322111 222222 566666
Q ss_pred EeeCC-----CcEEEEEcccc
Q psy14906 312 SAAGD-----STLRIFNTKSE 327 (583)
Q Consensus 312 ~~~~d-----g~i~iwd~~~~ 327 (583)
.|+.+ ..+.+||+.+.
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTT
T ss_pred ECCCCCCcccceEEEEeCCCC
Confidence 66654 23555555443
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.64 E-value=0.0036 Score=56.72 Aligned_cols=147 Identities=12% Similarity=0.015 Sum_probs=78.1
Q ss_pred CCcEEEEEecC------ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec---------CCcEEEEE
Q psy14906 423 CGNFVLIGYSS------GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN---------DQTVKVWH 487 (583)
Q Consensus 423 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---------dg~i~iwd 487 (583)
+++.++.|+.+ ..+.+||..+.+-...-.. ......-..+. -++++++.|+. -..+.+||
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd 175 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM---LTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYD 175 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC---cCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeC
Confidence 56666776654 4588899887654332211 11111112222 26677777764 34588888
Q ss_pred ccCCCCCceEEeeccC-CeeeEEeccCCcEEEEEeCC-----ceEEEEEccccceE--EeecccccceeeEEecCCCcEE
Q psy14906 488 FKQTGKPPLRSIKLDN-GISFFRTHQESSMLAVCLDD-----FTVNIIDIDTCTII--RKLSGHMGQLTDADFSPDSRWL 559 (583)
Q Consensus 488 ~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~h~~~v~~l~~s~d~~~l 559 (583)
+.+. +-...-.... .....+..-++++++.|+.+ ..+.+||..+.+-. ..+.........+.+ +++++
T Consensus 176 ~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~ 251 (306)
T 3ii7_A 176 PATE--TWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVY 251 (306)
T ss_dssp TTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEE
T ss_pred CCCC--eEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEE
Confidence 8775 2222211111 11111222267777777653 46889998876432 222221222222233 67788
Q ss_pred EEEeCC-----CeEEEEeCCCccc
Q psy14906 560 ITASMD-----CTIRVWDIPSSQL 578 (583)
Q Consensus 560 ~s~~~d-----~~i~vw~~~~~~~ 578 (583)
+.|+.+ ..+.+||+.+.+.
T Consensus 252 v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 252 VLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEeCcCCCeeeeeEEEEcCCCCeE
Confidence 888754 5688999887654
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.62 E-value=0.0036 Score=51.68 Aligned_cols=142 Identities=10% Similarity=0.032 Sum_probs=85.9
Q ss_pred CCceEEEEccCCcEEEEEecCceEEEEEcccCccccccCCCCCCCcccC--------eeEEEEeCCCcEEEEeecCCcEE
Q psy14906 413 SKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGG--------VRGVVSDNLNQIVISGGNDQTVK 484 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~--------v~~~~~s~~~~~l~s~~~dg~i~ 484 (583)
..+..++|+|+|.+.++ .+|.++-.+..+.....-+ +.... -.++.|.|+|.+.++ .||.|+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~------~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM------GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH------HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccc------ccccEecccccccceEEEECCCCCEEEe--CCCEEE
Confidence 46789999999997777 7787777776543221111 11222 378999999987777 569888
Q ss_pred EEEccCCCCCc-e---EEeec--cCCeeeEEeccCCcEEEEEeCCceEEEEEccccce------EEeec-ccccceeeEE
Q psy14906 485 VWHFKQTGKPP-L---RSIKL--DNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI------IRKLS-GHMGQLTDAD 551 (583)
Q Consensus 485 iwd~~~~~~~~-~---~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~-~h~~~v~~l~ 551 (583)
-++..+..... + ..+.. -..+..+.+.|+|.+.|+. |+.++-....++.. ...+- ..-..-+.+.
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 77764431111 1 11111 1468999999999988887 77654433321110 01111 2223345577
Q ss_pred ecCCCcEEEEEeCCCeE
Q psy14906 552 FSPDSRWLITASMDCTI 568 (583)
Q Consensus 552 ~s~d~~~l~s~~~d~~i 568 (583)
|++++.+.+.. ++.+
T Consensus 189 f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 189 FSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp ECTTSCEEEEE--TTEE
T ss_pred ECCCCcEEEEe--CCeE
Confidence 99999877765 6733
No 317
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.60 E-value=0.036 Score=49.60 Aligned_cols=210 Identities=9% Similarity=0.004 Sum_probs=117.4
Q ss_pred EeeCeEEEEE---cCCeEEEEeccceeeeeecccCccEEEEccCCCEEEEEeCC--------------CcEEEEEcCCCc
Q psy14906 80 SSDFFHIYTS---ANNIIYAWRRGIDIVGTYKGHTSPVHLILPFGPHLISVDEE--------------SNVKVWDIKAEE 142 (583)
Q Consensus 80 ~~~~~~~~~~---~~~~i~vw~~~~~~~~~~~~h~~~v~~is~~~~~l~s~~~d--------------g~i~iwd~~~~~ 142 (583)
++++..|.-+ .++.|...+.++...+.+... .+..|+++|++|+-+... ..|+..+++.++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~ 99 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG 99 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence 3455444443 256777777766545555432 345679999998876543 357777777665
Q ss_pred EEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEe----cCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCC
Q psy14906 143 TYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGL----SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPP 218 (583)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 218 (583)
...... .. +..|+++++.|+... .+..|...++. +.....+..+.. .+|+++++.
T Consensus 100 ~~~l~~--------------~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 100 STVLDP--------------DP--CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp CEEEEC--------------SC--EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEETTE
T ss_pred ceEeec--------------CC--ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEECCE
Confidence 332221 11 236778999998776 23456666665 444455554422 457888885
Q ss_pred EEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCe
Q psy14906 219 MMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPN 298 (583)
Q Consensus 219 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~ 298 (583)
+..+......|.+-++..+.....+ . +... ..+.|++.+|+-......-+|+.++...... ..+.. ..+
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l~-~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~---~~Lt~--~~~- 227 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALFY-D---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP---VVLTE--ANI- 227 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEEE-C---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC---EECSC--SCE-
T ss_pred EEEEeCCCceEEEEECCCCCEEEEe-C---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe---EEEeC--CCc-
Confidence 5555554678888888766543323 2 2222 3456888888876544324566555433222 22321 222
Q ss_pred eEEEeeCCCCEEEEeeC--CCcEEEEEcc
Q psy14906 299 YIQFYGNSSDNILSAAG--DSTLRIFNTK 325 (583)
Q Consensus 299 ~~~~~~~~~~~l~~~~~--dg~i~iwd~~ 325 (583)
..+.| ++++|+.+.. .+.|..-++.
T Consensus 228 -~~~~~-~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 228 -EHYNV-YGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp -EEEEE-ETTEEEEEECSSSCEEEEEETT
T ss_pred -ceEEE-CCCEEEEEECCCCcEEEEEECC
Confidence 33666 5667765532 2344444443
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.57 E-value=0.048 Score=50.28 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=45.8
Q ss_pred cCCeeeEEecc-------CCcEEEEEeCCceEEEEEccccceEEe---ecccccceeeEEecCCCcEEEEEe-CCCeEEE
Q psy14906 502 DNGISFFRTHQ-------ESSMLAVCLDDFTVNIIDIDTCTIIRK---LSGHMGQLTDADFSPDSRWLITAS-MDCTIRV 570 (583)
Q Consensus 502 ~~~v~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~h~~~v~~l~~s~d~~~l~s~~-~d~~i~v 570 (583)
+..+..++|.. +|.++++....+.|...+++.++.... +......+..+++.|||.+.++.. .+| +|
T Consensus 270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I 347 (353)
T 2g8s_A 270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--EL 347 (353)
T ss_dssp CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EE
T ss_pred CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EE
Confidence 34566777753 577777777788888888886654322 222335789999999998766543 345 44
Q ss_pred EeC
Q psy14906 571 WDI 573 (583)
Q Consensus 571 w~~ 573 (583)
|.+
T Consensus 348 ~ri 350 (353)
T 2g8s_A 348 LKV 350 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.57 E-value=0.022 Score=52.04 Aligned_cols=180 Identities=9% Similarity=0.028 Sum_probs=102.6
Q ss_pred CCceEEEeecCcccccceeeecccc-cccCCCCceEEEEcc--CCc--EEEEEec--CceEEEEEcccCccccccCCCCC
Q psy14906 383 GKNKVSLWSFYKSKMDDMFLVPERC-KQAKQSKPTCVYITH--CGN--FVLIGYS--SGHVDRFNIQSGAHRGSYGHDNQ 455 (583)
Q Consensus 383 ~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~--~~~--~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~ 455 (583)
.++.|.++|..........+..... ..........+.+.+ +++ ++++-.. +..|.+|++..+.....+.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6888999998743222222222211 111224667777766 353 4444333 56788888765432211110000
Q ss_pred CCcccCeeEEEEeCCCcEEEEeec---C------------CcEEEEEccCCCCCceEEeeccCCeeeEEeccCCcEEEEE
Q psy14906 456 PGHVGGVRGVVSDNLNQIVISGGN---D------------QTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVC 520 (583)
Q Consensus 456 ~~h~~~v~~~~~s~~~~~l~s~~~---d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 520 (583)
...-...+.+.+.++|.+.++... | ..=++|.+..+ +.......-...+.++|+||++.|+++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYva 238 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA 238 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEE
Confidence 122346889999999998877541 1 22344444433 443344444678899999999977776
Q ss_pred e-CCceEEEEEccc-cce--EEeecccccceeeEEecC-CCcEEEEEeCC
Q psy14906 521 L-DDFTVNIIDIDT-CTI--IRKLSGHMGQLTDADFSP-DSRWLITASMD 565 (583)
Q Consensus 521 ~-~dg~i~i~d~~~-~~~--~~~~~~h~~~v~~l~~s~-d~~~l~s~~~d 565 (583)
. ..+.|+.|+++. ++. ...+. .....-.+++.+ +|++.+++..+
T Consensus 239 dt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 239 ELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred eCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 5 468999999863 332 12332 235567788888 58877766544
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.53 E-value=0.025 Score=51.05 Aligned_cols=223 Identities=9% Similarity=-0.018 Sum_probs=113.6
Q ss_pred CCeEEEEecCCcEEE--eecCCCCCCeEEEEeeCeEE-EEEcC----CeEEEEeccceeeeee---cccCccEEEEccCC
Q psy14906 52 GKAFHVYGCNHFKLL--SVSPQHEDDITCLSSDFFHI-YTSAN----NIIYAWRRGIDIVGTY---KGHTSPVHLILPFG 121 (583)
Q Consensus 52 ~~~i~v~d~~~~~~~--~~~~~h~~~v~~~~~~~~~~-~~~~~----~~i~vw~~~~~~~~~~---~~h~~~v~~is~~~ 121 (583)
.+.+.+||..+.+=. ..++.....-.++..+++++ .++.+ ..+.++|........+ ......-.....++
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~ 102 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEG 102 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETT
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECC
Confidence 568999999885533 33333333334445667654 44433 5788899754332222 21111122224467
Q ss_pred CEEEEEeCC------CcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEec---------CCeE
Q psy14906 122 PHLISVDEE------SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLS---------NKKI 186 (583)
Q Consensus 122 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------d~~i 186 (583)
+.++.|+.+ ..+.+||..+.+-...-... .....-.++.+ ++++++.|+. ...+
T Consensus 103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p---------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 171 (306)
T 3ii7_A 103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML---------TQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSC 171 (306)
T ss_dssp EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS---------SCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCE
T ss_pred EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc---------CCcceeEEEEE--CCEEEEECCCCCCCCcccccceE
Confidence 777777655 46889998887543322211 11111122222 5667777654 3458
Q ss_pred EEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-----CcEEEEeCCCCeeh--hhhhhccccceEEEEEecC
Q psy14906 187 ILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-----GHLTVWNLEDRQVE--NQIKKAHRKVVTGAHFLYN 259 (583)
Q Consensus 187 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~ 259 (583)
.+||+.+.+-...-..........+..-+++ +++.|+.+ ..+.+||+.+.+-. ..+. .......++.+ +
T Consensus 172 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~--~ 247 (306)
T 3ii7_A 172 EVYDPATETWTELCPMIEARKNHGLVFVKDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP-WKGVTVKCAAV--G 247 (306)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEETTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCS-CCBSCCEEEEE--T
T ss_pred EEeCCCCCeEEECCCccchhhcceEEEECCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC-CCccceeEEEE--C
Confidence 8999887643322111111111111222555 77777653 35889999876432 2221 11112222222 6
Q ss_pred CCEEEEEeCC-----CeEEEEEccCCCCCceeeEEec
Q psy14906 260 EPLLVTSSPD-----NTLKLWIFDKADGNGRLLRIRE 291 (583)
Q Consensus 260 ~~~l~s~~~d-----~~i~~w~~~~~~~~~~~~~~~~ 291 (583)
+.+++.|+.+ ..+.+| +........+..+.
T Consensus 248 ~~i~v~GG~~~~~~~~~~~~y--d~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 248 SIVYVLAGFQGVGRLGHILEY--NTETDKWVANSKVR 282 (306)
T ss_dssp TEEEEEECBCSSSBCCEEEEE--ETTTTEEEEEEEEE
T ss_pred CEEEEEeCcCCCeeeeeEEEE--cCCCCeEEeCCCcc
Confidence 7778888754 455666 44443455554443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.50 E-value=0.011 Score=53.30 Aligned_cols=147 Identities=14% Similarity=0.068 Sum_probs=77.2
Q ss_pred CCcEEEEEecC-----ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecC-------CcEEEEEccC
Q psy14906 423 CGNFVLIGYSS-----GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGND-------QTVKVWHFKQ 490 (583)
Q Consensus 423 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-------g~i~iwd~~~ 490 (583)
+++.++.|+.+ ..+.+||..+.+-...-.. .........+. -++++++.|+.+ ..+.+||+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM---NTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC---CCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 55666666644 3578888876654332211 11111112222 267777777643 3488888876
Q ss_pred CCCCceEEeeccCC-eeeEEeccCCcEEEEEeCC-----ceEEEEEccccceEE--eecccccceeeEEecCCCcEEEEE
Q psy14906 491 TGKPPLRSIKLDNG-ISFFRTHQESSMLAVCLDD-----FTVNIIDIDTCTIIR--KLSGHMGQLTDADFSPDSRWLITA 562 (583)
Q Consensus 491 ~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~h~~~v~~l~~s~d~~~l~s~ 562 (583)
. +-...-....+ ....+..-++++++.|+.+ ..+.+||..+.+-.. .+..... ..-....++++++.|
T Consensus 183 ~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~~~i~v~G 258 (302)
T 2xn4_A 183 N--EWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR--NAGVCAVNGLLYVVG 258 (302)
T ss_dssp T--EEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB--SCEEEEETTEEEEEC
T ss_pred C--cEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc--cCeEEEECCEEEEEC
Confidence 5 22221111111 1111222367788887764 478999998764322 2221111 111222367788888
Q ss_pred eCCC-----eEEEEeCCCccc
Q psy14906 563 SMDC-----TIRVWDIPSSQL 578 (583)
Q Consensus 563 ~~d~-----~i~vw~~~~~~~ 578 (583)
+.++ .+.+||+.+.+.
T Consensus 259 G~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 259 GDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CBCSSSBCCCEEEEETTTTEE
T ss_pred CcCCCcccccEEEEcCCCCeE
Confidence 7653 489999887654
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.50 E-value=0.046 Score=49.13 Aligned_cols=202 Identities=8% Similarity=-0.055 Sum_probs=102.0
Q ss_pred CeEEEEecCCcEEEe--ecCCCCCCeEEEEeeCeEE-EEEcC-----CeEEEEecccee---eeee---cccCccEEEEc
Q psy14906 53 KAFHVYGCNHFKLLS--VSPQHEDDITCLSSDFFHI-YTSAN-----NIIYAWRRGIDI---VGTY---KGHTSPVHLIL 118 (583)
Q Consensus 53 ~~i~v~d~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~~~~~-----~~i~vw~~~~~~---~~~~---~~h~~~v~~is 118 (583)
+.+.+||+.+.+-.. .++.....-.++..+++++ .++.+ +.+.+||..... ...+ ......-.++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 478999988765433 2332222333444566544 44433 368889864332 2222 22112222234
Q ss_pred cCCCEEEEEeCC-----CcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC-----CeEEE
Q psy14906 119 PFGPHLISVDEE-----SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN-----KKIIL 188 (583)
Q Consensus 119 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~i 188 (583)
.+++.++.|+.+ ..+.++|..+.+-...-... .....-.++.+ ++++++.|+.+ ..+.+
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ---------TAREGAGLVVA--SGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS---------SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC---------CCcccceEEEE--CCEEEEECCCCCCcccceEEE
Confidence 466666676643 36888998876543322211 11111122222 67777777654 46889
Q ss_pred EEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-----CcEEEEeCCCCeehh--hhhhccccceEEEEEecCCC
Q psy14906 189 HNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-----GHLTVWNLEDRQVEN--QIKKAHRKVVTGAHFLYNEP 261 (583)
Q Consensus 189 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ 261 (583)
||+.+.+-...-..........+..-++. +++.|+.+ ..+.+||+.+.+-.. .+... ......+ .-+++
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~--~~~~~ 255 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGAGVALLNDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGAT--VLRGR 255 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEE--EETTE
T ss_pred EeCCCCcEEeCCCCCcccccceEEEECCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEE--EECCE
Confidence 99877644332111111111111222555 77777764 468999998775322 22111 1111222 23677
Q ss_pred EEEEEeCC
Q psy14906 262 LLVTSSPD 269 (583)
Q Consensus 262 ~l~s~~~d 269 (583)
+++.|+.+
T Consensus 256 i~v~GG~~ 263 (301)
T 2vpj_A 256 LYAIAGYD 263 (301)
T ss_dssp EEEECCBC
T ss_pred EEEEcCcC
Confidence 77777765
No 323
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.45 E-value=0.023 Score=60.71 Aligned_cols=267 Identities=15% Similarity=0.178 Sum_probs=156.2
Q ss_pred CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEeccCCCeEE
Q psy14906 130 ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTA 209 (583)
Q Consensus 130 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~ 209 (583)
+.+|.|-|+.++..+.+.+. .--+.-.+|..+.||.-. ..++.|+|+++.+.++.+... .+|.-
T Consensus 47 ~~~vvIidl~~~~~~~rrpi--------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~Vvf 110 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI--------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTF 110 (1630)
T ss_pred CceEEEEECCCCCCcccccc--------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceE
Confidence 44788888888665533322 122344678888777664 678999999999888888776 56777
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEeCCCC-eehhhhhhcc----ccceEEEEEecCCCEEEEEe-------CCCeEEEEEc
Q psy14906 210 LSFRTDGPPMMVSGSNTGHLTVWNLEDR-QVENQIKKAH----RKVVTGAHFLYNEPLLVTSS-------PDNTLKLWIF 277 (583)
Q Consensus 210 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~-------~d~~i~~w~~ 277 (583)
=.|-.+.. |+-.+ +..|..|++... .+.+.+ .-| ...|..-..+++.++++..| -.|.+.+|..
T Consensus 111 WkWis~~~--l~lVT-~~aVyHW~~~~~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 111 WKWISLNT--VALVT-DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred EEecCCCe--eEEEc-CCeEEEeccCCCCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 77876665 33333 347999999743 455544 344 45677777888888877544 3488899966
Q ss_pred cCCCCCceeeEEeccCCCCCeeEEEee--CCCCEEEEeeC---CCcEEEEEcccc-ccceeeccchhhhhhhhhhcchhc
Q psy14906 278 DKADGNGRLLRIREGHSAPPNYIQFYG--NSSDNILSAAG---DSTLRIFNTKSE-TSNKNLGIASANRNNLKRKNRLEK 351 (583)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
+ .+..+.+.||.+....+.... .....+..+.. .+.+++-++... .....+...
T Consensus 187 e-----r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk--------------- 246 (1630)
T 1xi4_A 187 D-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK--------------- 246 (1630)
T ss_pred c-----cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc---------------
Confidence 3 344556677766554444321 11122222221 256777666432 000000000
Q ss_pred cccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCCcEEEEEe
Q psy14906 352 MNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGY 431 (583)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 431 (583)
.....+| ++ ....-..++..++.-..+..-+
T Consensus 247 -~~~~~~~--------------------------------------------~~----~~~Dfpv~~~vs~k~g~iy~it 277 (1630)
T 1xi4_A 247 -AVDVFFP--------------------------------------------PE----AQNDFPVAMQISEKHDVVFLIT 277 (1630)
T ss_pred -cccccCC--------------------------------------------cc----cccCcceEEEeccccCEEEEEe
Confidence 0000000 00 0013456788888888888999
Q ss_pred cCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccC
Q psy14906 432 SSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 432 ~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 490 (583)
.-|.|++||+.++.++..- +-....|...+......-++.....|.|.--.+..
T Consensus 278 k~G~~~~~d~~t~~~i~~~-----ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIYMN-----RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred cCceEEEEecccchhhhhc-----cccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 9999999999999987665 33344444444433333344444555554444443
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.40 E-value=0.02 Score=51.53 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=35.9
Q ss_pred CCcEEEEEecC-----ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCC-----cEEEEEccCC
Q psy14906 423 CGNFVLIGYSS-----GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQ-----TVKVWHFKQT 491 (583)
Q Consensus 423 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~ 491 (583)
+++.++.|+.+ ..+.+||..+.+-...-..+ ........+. -++++++.|+.++ .+.+||+.+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN---MCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS---SCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC---CccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 56677777654 36889998776543322111 1111111222 2677888887654 4788887765
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.38 E-value=0.022 Score=52.47 Aligned_cols=114 Identities=11% Similarity=0.168 Sum_probs=78.7
Q ss_pred CceEEEEccCCcEEEEEecCceEEEEEcccCcccc------------ccCCCC-CCCcccCeeEEEEeCCC---cEEEEe
Q psy14906 414 KPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG------------SYGHDN-QPGHVGGVRGVVSDNLN---QIVISG 477 (583)
Q Consensus 414 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~------------~~~~~~-~~~h~~~v~~~~~s~~~---~~l~s~ 477 (583)
.+..+..+|+|++||+.+.. .|.|..+..+.... .+.... ......+|..+.|+|-+ ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 57789999999999998655 58888887332111 111000 01135789999999954 589999
Q ss_pred ecCCcEEEEEccCCCCCceEEeec----------cCCeeeEEeccCCcEEEEEe--CCceEEEE
Q psy14906 478 GNDQTVKVWHFKQTGKPPLRSIKL----------DNGISFFRTHQESSMLAVCL--DDFTVNII 529 (583)
Q Consensus 478 ~~dg~i~iwd~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~--~dg~i~i~ 529 (583)
..|+.|++||+.....++. .++. ...+.+++|.+++-.|.+.+ +.|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999987433444 2221 14688999999888777755 77887654
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.30 E-value=0.13 Score=49.11 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=70.8
Q ss_pred cCeeEEEEeCCCcEEEEee-cCCcEEEEEccCCC----CCc-------eEEeeccCCeeeEEeccCCcEEEEEeCCceEE
Q psy14906 460 GGVRGVVSDNLNQIVISGG-NDQTVKVWHFKQTG----KPP-------LRSIKLDNGISFFRTHQESSMLAVCLDDFTVN 527 (583)
Q Consensus 460 ~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~----~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 527 (583)
.....+..+|||++++.++ .+.++.++|++... .+. ....+..-.....+|.++|....+-.-|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 4455788999999887665 67899999998420 011 23344455788899999996666677899999
Q ss_pred EEEcccc----------ceEEeecccccceeeE-----EecCCCcEEEEEe
Q psy14906 528 IIDIDTC----------TIIRKLSGHMGQLTDA-----DFSPDSRWLITAS 563 (583)
Q Consensus 528 i~d~~~~----------~~~~~~~~h~~~v~~l-----~~s~d~~~l~s~~ 563 (583)
.|++... ..+.++.-|-.+-.-. .-.+||++|++..
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999764 3555565554322211 1257889988874
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.28 E-value=0.023 Score=51.31 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=77.4
Q ss_pred CCcEEEEEecC-----ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecC-----CcEEEEEccCCC
Q psy14906 423 CGNFVLIGYSS-----GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGND-----QTVKVWHFKQTG 492 (583)
Q Consensus 423 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 492 (583)
+++.++.|+.+ ..+.+||..+.+-...-.. ......-..+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM---LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC---SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC---CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 55666666543 3588888876654332211 111111122222 67777777754 358888887652
Q ss_pred CCceEEeeccCCeeeEEeccCCcEEEEEeCC-----ceEEEEEccccceEE--eecccccceeeEEecCCCcEEEEEeCC
Q psy14906 493 KPPLRSIKLDNGISFFRTHQESSMLAVCLDD-----FTVNIIDIDTCTIIR--KLSGHMGQLTDADFSPDSRWLITASMD 565 (583)
Q Consensus 493 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~h~~~v~~l~~s~d~~~l~s~~~d 565 (583)
-..+..+.....-.+++. -++++++.|+.+ ..+.+||+.+.+-.. .+......-..+. -++++++.|+.+
T Consensus 196 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~ 272 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYD 272 (308)
T ss_dssp EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred EeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcC
Confidence 111111111111112222 267777777664 568999998764332 1221111112222 367777887754
Q ss_pred -----CeEEEEeCCCccc
Q psy14906 566 -----CTIRVWDIPSSQL 578 (583)
Q Consensus 566 -----~~i~vw~~~~~~~ 578 (583)
..+.+||+.+.+.
T Consensus 273 ~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 273 GHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp SSCBCCEEEEEETTTTEE
T ss_pred CCcccceEEEEcCCCCEE
Confidence 4688999887654
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.19 E-value=0.043 Score=49.76 Aligned_cols=107 Identities=8% Similarity=-0.013 Sum_probs=55.6
Q ss_pred cCCcEEEEEec------CceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCC-----cEEEEEccC
Q psy14906 422 HCGNFVLIGYS------SGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQ-----TVKVWHFKQ 490 (583)
Q Consensus 422 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~ 490 (583)
-+++.++.|+. -..+.+||..+.+-...-.. ......-.++.+ ++++++.|+.++ .+.+||+.+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 35566666665 24688899877653332211 111111122222 677888887654 477888876
Q ss_pred CCCCceEEeeccC-CeeeEEeccCCcEEEEEeCC--------------ceEEEEEccccc
Q psy14906 491 TGKPPLRSIKLDN-GISFFRTHQESSMLAVCLDD--------------FTVNIIDIDTCT 535 (583)
Q Consensus 491 ~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d--------------g~i~i~d~~~~~ 535 (583)
. +-...-.... .....+..-++++++.|+.+ ..+.+||+++.+
T Consensus 222 ~--~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 222 N--KWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp T--EEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred C--eEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 5 2222211111 11111222367777777653 247788887654
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.14 E-value=0.074 Score=48.16 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=76.1
Q ss_pred CCcEEEEEecC--------ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec-C-----CcEEEEEc
Q psy14906 423 CGNFVLIGYSS--------GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN-D-----QTVKVWHF 488 (583)
Q Consensus 423 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d-----g~i~iwd~ 488 (583)
+++.++.|+.+ ..+.+||..+.+-...-.. ......-..+. -++++++.|+. + ..+.+||+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL---PYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC---CCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeC
Confidence 45566666532 4588899877653322111 11111111222 36677777776 2 35888888
Q ss_pred cCCCCCceEEeeccC-CeeeEEeccCCcEEEEEeCCc-----eEEEEEccccceEE--eecccccceeeEEecCCCcEEE
Q psy14906 489 KQTGKPPLRSIKLDN-GISFFRTHQESSMLAVCLDDF-----TVNIIDIDTCTIIR--KLSGHMGQLTDADFSPDSRWLI 560 (583)
Q Consensus 489 ~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~h~~~v~~l~~s~d~~~l~ 560 (583)
.+. +-...-..+. .....+..-++++++.|+.++ .+.+||..+.+-.. .+......-..+. -++++++
T Consensus 173 ~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v 248 (315)
T 4asc_A 173 KKF--EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYA 248 (315)
T ss_dssp TTT--EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred CCC--eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEE
Confidence 765 2211111111 111122223678888877653 68899988764322 2221111112222 3677777
Q ss_pred EEeCC--------------CeEEEEeCCCccc
Q psy14906 561 TASMD--------------CTIRVWDIPSSQL 578 (583)
Q Consensus 561 s~~~d--------------~~i~vw~~~~~~~ 578 (583)
.|+.+ ..+.+||+.+.+.
T Consensus 249 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 249 IGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred ECCccccCcCCccccccccCcEEEecCCCChh
Confidence 77764 2477889887654
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.13 E-value=0.16 Score=46.80 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=41.8
Q ss_pred cCeeEEEEeC-------CCcEEEEeecCCcEEEEEccCCCCCceEEee----ccCCeeeEEeccCCcEEEEEe-CCceE
Q psy14906 460 GGVRGVVSDN-------LNQIVISGGNDQTVKVWHFKQTGKPPLRSIK----LDNGISFFRTHQESSMLAVCL-DDFTV 526 (583)
Q Consensus 460 ~~v~~~~~s~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~dg~i 526 (583)
.....++|.. +++++++.-..+.|...+++.+ ....... ....+..+++.|||.++++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD--KVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT--EEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC--eEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 4577788864 4677777667788888888754 3332211 124788999999998666543 34433
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.09 E-value=0.15 Score=45.64 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=75.9
Q ss_pred CCCCCEEEEEe--cCCeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcCC-------------CcEEEEeCC
Q psy14906 171 SPVVDIIGVGL--SNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNT-------------GHLTVWNLE 235 (583)
Q Consensus 171 s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------------g~i~vwd~~ 235 (583)
++++..|.... .++.|...+.. |.....+... .+--+++++.++..+...+ ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34677776654 24566666654 4344444433 2345688898555555443 357777777
Q ss_pred CCeehhhhhhccccceEEEEEecCCCEEEEEe--CCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEe
Q psy14906 236 DRQVENQIKKAHRKVVTGAHFLYNEPLLVTSS--PDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSA 313 (583)
Q Consensus 236 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 313 (583)
..+.. .+ .... +..|+++++.|+-.. .++.-.|+.++...... ..+..+.. ..+++ +++.|+-.
T Consensus 97 g~~~~-~l---~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~---~~lt~~~~----~~~~~-~g~~iy~t 162 (302)
T 3s25_A 97 GHGST-VL---DPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK---KKIKNHYL----FTCNT-SDRYFYYN 162 (302)
T ss_dssp SCCCE-EE---ECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC---EEEESSCC----CCSEE-ETTEEEEE
T ss_pred CCcce-Ee---ecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe---EEEeCCCc----eEeeE-ECCEEEEE
Confidence 65422 22 1111 236788999888776 45666777666543222 23333322 23455 56666655
Q ss_pred eC-CCcEEEEEcccc
Q psy14906 314 AG-DSTLRIFNTKSE 327 (583)
Q Consensus 314 ~~-dg~i~iwd~~~~ 327 (583)
+. ...|...++..+
T Consensus 163 ~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 163 NPKNGQLYRYDTASQ 177 (302)
T ss_dssp CTTTCCEEEEETTTT
T ss_pred eCCCceEEEEECCCC
Confidence 44 566766666543
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.04 E-value=0.044 Score=50.76 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=46.7
Q ss_pred CCceEEEEe-eCCeEEEEecCC----cEEEeecC-CCCCCeEEEEeeCeEE-EEEc-C---------CeEEEEeccceee
Q psy14906 42 RKETLFVTC-VGKAFHVYGCNH----FKLLSVSP-QHEDDITCLSSDFFHI-YTSA-N---------NIIYAWRRGIDIV 104 (583)
Q Consensus 42 ~~~~~i~~~-~~~~i~v~d~~~----~~~~~~~~-~h~~~v~~~~~~~~~~-~~~~-~---------~~i~vw~~~~~~~ 104 (583)
+...+++.+ .++.+.+||+.+ .+.+..++ .....-.+...++++. .++. + +.+.+||.....-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 344555544 567899999863 44444444 2222333444567644 4444 2 3688888754333
Q ss_pred eeecc----cCccEEEEccCCCEEEEEeCC
Q psy14906 105 GTYKG----HTSPVHLILPFGPHLISVDEE 130 (583)
Q Consensus 105 ~~~~~----h~~~v~~is~~~~~l~s~~~d 130 (583)
..+.. ....-.++..+++.++.|+.+
T Consensus 99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred EECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 33221 112222335677777777754
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.03 E-value=0.1 Score=47.11 Aligned_cols=208 Identities=9% Similarity=0.008 Sum_probs=103.5
Q ss_pred CeEEEEecCCcEEEee--cCCCCCCeEEEEeeCeEEE-EEc----C-----CeEEEEeccceeeeeec---ccCccEEEE
Q psy14906 53 KAFHVYGCNHFKLLSV--SPQHEDDITCLSSDFFHIY-TSA----N-----NIIYAWRRGIDIVGTYK---GHTSPVHLI 117 (583)
Q Consensus 53 ~~i~v~d~~~~~~~~~--~~~h~~~v~~~~~~~~~~~-~~~----~-----~~i~vw~~~~~~~~~~~---~h~~~v~~i 117 (583)
+.+.+||+.+.+-... ++.....-.++..++++++ ++. + +.+.+||........+. .....-...
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 118 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG 118 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE
Confidence 5789999887654432 2222222233445665444 443 2 36888887543333322 111111222
Q ss_pred ccCCCEEEEEeCC-----CcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecC-----CeEE
Q psy14906 118 LPFGPHLISVDEE-----SNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN-----KKII 187 (583)
Q Consensus 118 s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~ 187 (583)
..+++.++.|+.+ ..+.++|..+.+-...-... .....-.++.+ ++++++.|+.+ ..+.
T Consensus 119 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 187 (308)
T 1zgk_A 119 VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML---------TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAE 187 (308)
T ss_dssp EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS---------SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEE
T ss_pred EECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC---------ccccceEEEEE--CCEEEEEeCCCCCCcCceEE
Confidence 3466666666543 46888898876533222211 11112222222 56777777654 4688
Q ss_pred EEEccCCceeEE--EeccCCCeEEEEEecCCCCEEEEEcCC-----CcEEEEeCCCCeehh--hhhhccccceEEEEEec
Q psy14906 188 LHNILTDESLME--FIQTWGPVTALSFRTDGPPMMVSGSNT-----GHLTVWNLEDRQVEN--QIKKAHRKVVTGAHFLY 258 (583)
Q Consensus 188 iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~ 258 (583)
+||+.+.+-... +........++.+ ++. +++.|+.+ ..+.+||+.+.+-.. .+... .... +++. -
T Consensus 188 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~-~~~~-~ 261 (308)
T 1zgk_A 188 CYYPERNEWRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSAL-GITV-H 261 (308)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSC-EEEE-E
T ss_pred EEeCCCCeEeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-ccce-EEEE-E
Confidence 999876643221 1111111222222 555 77777654 469999998765332 22111 1111 2222 2
Q ss_pred CCCEEEEEeCC-----CeEEEEEc
Q psy14906 259 NEPLLVTSSPD-----NTLKLWIF 277 (583)
Q Consensus 259 ~~~~l~s~~~d-----~~i~~w~~ 277 (583)
++++++.|+.+ ..+.+||+
T Consensus 262 ~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 262 QGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEET
T ss_pred CCEEEEEcCcCCCcccceEEEEcC
Confidence 67777777754 34555643
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.02 E-value=0.036 Score=51.33 Aligned_cols=140 Identities=10% Similarity=0.015 Sum_probs=67.9
Q ss_pred ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeec------CCcEEEEEc--cCCCCCceEE--eeccC
Q psy14906 434 GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN------DQTVKVWHF--KQTGKPPLRS--IKLDN 503 (583)
Q Consensus 434 g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~--~~~~~~~~~~--~~~~~ 503 (583)
..+.+||..+.+-...-..+ ...... .+++.. ++++++.|+. ...+.+||+ .+. .-... +....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p--~~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~--~W~~~~~~~~~~ 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESP--WYGTAG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL--KWNKLAPVSSPD 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECS--SCCCBS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C--EEEECCCSSTTT
T ss_pred ccEEEEeCCCCcEEECCCCC--CCCccc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC--cEEecCCCCCCc
Confidence 46888998766543321111 011111 122222 6677777764 235677776 332 11111 11111
Q ss_pred -CeeeEEeccCCcEEEEEeCC----------------------ceEEEEEccccc--eEEeecccccceeeEEecCCCcE
Q psy14906 504 -GISFFRTHQESSMLAVCLDD----------------------FTVNIIDIDTCT--IIRKLSGHMGQLTDADFSPDSRW 558 (583)
Q Consensus 504 -~v~~~~~s~~~~~l~~~~~d----------------------g~i~i~d~~~~~--~~~~~~~h~~~v~~l~~s~d~~~ 558 (583)
.....+...++++++.|+.+ ..+.+||+.+.+ .+..+...... ..+...++++
T Consensus 242 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i 319 (357)
T 2uvk_A 242 GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSL 319 (357)
T ss_dssp CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEE
T ss_pred ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEE
Confidence 11222334467777777632 257889987653 33333322222 2233347888
Q ss_pred EEEEeCCC------eEEEEeCCCcccccc
Q psy14906 559 LITASMDC------TIRVWDIPSSQLIDC 581 (583)
Q Consensus 559 l~s~~~d~------~i~vw~~~~~~~~~~ 581 (583)
++.|+.++ .|.+.++++++.+..
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 88888653 466679888877653
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.99 E-value=0.085 Score=48.61 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=96.5
Q ss_pred eCCCCCEEEEEecCCeEEEEEccCCceeEEEecc----CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee-h----
Q psy14906 170 PSPVVDIIGVGLSNKKIILHNILTDESLMEFIQT----WGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV-E---- 240 (583)
Q Consensus 170 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~---- 240 (583)
.+.+|..++++ .++.||.-++......+.+... -..+..+..+|+|+ +||..+ +..|.|-.+..+.. .
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccc
Confidence 34566666665 3468888888755445555543 23688999999999 777665 45899988873321 0
Q ss_pred -------hhhhhc-----cccceEEEEEecC---CCEEEEEeCCCeEEEEEccCCCCCceee------EEeccCCCCCee
Q psy14906 241 -------NQIKKA-----HRKVVTGAHFLYN---EPLLVTSSPDNTLKLWIFDKADGNGRLL------RIREGHSAPPNY 299 (583)
Q Consensus 241 -------~~~~~~-----~~~~v~~~~~~~~---~~~l~s~~~d~~i~~w~~~~~~~~~~~~------~~~~~~~~~v~~ 299 (583)
+.+..+ ...+|..+.|+|- +..|++-..|+.|++||+.........+ ..+......|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 011111 2467999999985 4589999999999999887532222211 111223357888
Q ss_pred EEEeeCCCCEEEEee--CCCcEEEEE
Q psy14906 300 IQFYGNSSDNILSAA--GDSTLRIFN 323 (583)
Q Consensus 300 ~~~~~~~~~~l~~~~--~dg~i~iwd 323 (583)
++|.+ ++-.|+..+ .+|.|+-.-
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEEES
T ss_pred EEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 99986 676677644 677776543
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.98 E-value=0.051 Score=58.19 Aligned_cols=224 Identities=8% Similarity=0.090 Sum_probs=137.1
Q ss_pred EEeCCCceEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEe-eCeEEEEEcCCeEEEEeccc--eeeeeeccc----
Q psy14906 38 FIRRRKETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSS-DFFHIYTSANNIIYAWRRGI--DIVGTYKGH---- 110 (583)
Q Consensus 38 ~~p~~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~~~~i~vw~~~~--~~~~~~~~h---- 110 (583)
.+|. ..+|+.-.+..+.|+|+++.+.++...- ..+|.--.| +++.+.--.+..|..|++.+ .+.+.|..|
T Consensus 73 MnP~--~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPA--SKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCC--cceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcc
Confidence 4444 3456666799999999999888876653 445655555 77778777899999999853 566667666
Q ss_pred CccEEEE--ccCCCEEEEEeC-------CCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeC--C-CCCEEE
Q psy14906 111 TSPVHLI--LPFGPHLISVDE-------ESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPS--P-VVDIIG 178 (583)
Q Consensus 111 ~~~v~~i--s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~-~~~~l~ 178 (583)
...|... +++.+|++..|- .|.+.+++.+.+. .+.+. +|.+....+... + ....++
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ie-----------gha~~F~~~~~~~~~~~~~l~~ 217 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE-----------GHAASFAQFKMEGNAEESTLFC 217 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhh-----------HhHhhhheeccCCCCCCceEEE
Confidence 3445443 888998885432 4788888877542 22222 444433333332 1 122333
Q ss_pred EEec---CCeEEEEEccCC---ceeE-----E-E-e--ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhh
Q psy14906 179 VGLS---NKKIILHNILTD---ESLM-----E-F-I--QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI 243 (583)
Q Consensus 179 ~~~~---d~~i~iw~~~~~---~~~~-----~-~-~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 243 (583)
.+.. .+.++|.++... .... . + . ...+-..++..++.-. +++.-+.-|.+.++|++++.++..-
T Consensus 218 f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhc
Confidence 3222 267888887532 1111 0 0 1 1123345666677655 7888888999999999999988766
Q ss_pred hhccccceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy14906 244 KKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFD 278 (583)
Q Consensus 244 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 278 (583)
+-....|...+......-++.....|.|.--.++
T Consensus 297 -ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 297 -RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred -cccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 4455555555544443345555566766555444
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.82 E-value=0.049 Score=45.08 Aligned_cols=103 Identities=19% Similarity=0.104 Sum_probs=64.5
Q ss_pred cceEEEeeCCCCCEEEEEecCCeEEEEEccCCcee------EEEe--ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q psy14906 163 SCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESL------MEFI--QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL 234 (583)
Q Consensus 163 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~------~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 234 (583)
..+..++|+|+|.+.++ .+|.+.-.+..+.+.. ..+- +- ..-.++.|.|+|. +.++ .||.|.-++.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw-~~F~a~~fD~~G~-LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGW-NQFQFLFFDPNGY-LYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCG-GGCSEEEECTTSC-EEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccc-ccceEEEECCCCC-EEEe--CCCEEEEeCC
Confidence 47779999999997777 7777666665442111 1111 11 1247899999997 4444 5699988876
Q ss_pred CCCeehhhhhhcc------ccceEEEEEecCCCEEEEEeCCCeEE
Q psy14906 235 EDRQVENQIKKAH------RKVVTGAHFLYNEPLLVTSSPDNTLK 273 (583)
Q Consensus 235 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~d~~i~ 273 (583)
.+...-.-+..+- -..+..|.|.|+|.+.+.. |+.+.
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 4432222111111 1478999999999877666 77643
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.81 E-value=0.28 Score=44.41 Aligned_cols=146 Identities=11% Similarity=0.057 Sum_probs=75.7
Q ss_pred CCcEEEEEecC-------ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecC------CcEEEEEcc
Q psy14906 423 CGNFVLIGYSS-------GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGND------QTVKVWHFK 489 (583)
Q Consensus 423 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~ 489 (583)
+++.++.|+.+ ..+.+||..+.+-...-.. ......- +++. .++++++.|+.+ ..+.+||+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL---PIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC---SSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC---CCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56666666643 3588888876654332111 1111111 1222 467777777642 358889987
Q ss_pred CCCCCceEEeeccC--CeeeEEeccCCcEEEEEeCC-----ceEEEEEccccceEE--eecccccceeeEEecCCCcEEE
Q psy14906 490 QTGKPPLRSIKLDN--GISFFRTHQESSMLAVCLDD-----FTVNIIDIDTCTIIR--KLSGHMGQLTDADFSPDSRWLI 560 (583)
Q Consensus 490 ~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~h~~~v~~l~~s~d~~~l~ 560 (583)
+. +-...-.... .-.+++ .-++++++.|+.+ ..+.+||+.+.+-.. .+......-.. ...++++++
T Consensus 184 ~~--~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v 258 (318)
T 2woz_A 184 KG--DWKDLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL--VSLAGSLYA 258 (318)
T ss_dssp TT--EEEEECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE--EEETTEEEE
T ss_pred CC--EEEECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE--EEECCEEEE
Confidence 75 2222111111 111222 2367777777643 467889987764322 22211111122 223677777
Q ss_pred EEeCC--------------CeEEEEeCCCccc
Q psy14906 561 TASMD--------------CTIRVWDIPSSQL 578 (583)
Q Consensus 561 s~~~d--------------~~i~vw~~~~~~~ 578 (583)
.|+.+ ..+.+||+.+.+.
T Consensus 259 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 259 IGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp ECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred ECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 77654 3578899887654
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.67 E-value=0.35 Score=43.71 Aligned_cols=151 Identities=5% Similarity=0.012 Sum_probs=74.0
Q ss_pred CCCEEEEEecC-------CeEEEEEccCCceeEEEeccCCCeEEEEEecCCCCEEEEEcC------CCcEEEEeCCCCee
Q psy14906 173 VVDIIGVGLSN-------KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSN------TGHLTVWNLEDRQV 239 (583)
Q Consensus 173 ~~~~l~~~~~d-------~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~ 239 (583)
++++++.|+.+ ..+.+||..+.+-...-..........+...++. +++.|+. -..+.+||+.+.+-
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTE-EEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCE-EEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 56777777754 3578888876643322111111111111224565 6677764 24589999987653
Q ss_pred hhhhhhccccceEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEee
Q psy14906 240 ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDN-----TLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAA 314 (583)
Q Consensus 240 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 314 (583)
...-.......-.+++. -++++++.|+.++ .+.+| +..+.....+..+...... .++... +++.++.|+
T Consensus 188 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~y--d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~i~v~GG 261 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAF--DLKTNKWEVMTEFPQERSS-ISLVSL--AGSLYAIGG 261 (318)
T ss_dssp EEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEE--ETTTCCEEECCCCSSCCBS-CEEEEE--TTEEEEECC
T ss_pred EECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEE--ECCCCeEEECCCCCCcccc-eEEEEE--CCEEEEECC
Confidence 22110011111112222 3667777776532 34455 4444344444333221111 223332 567777776
Q ss_pred CC--------------CcEEEEEccccccc
Q psy14906 315 GD--------------STLRIFNTKSETSN 330 (583)
Q Consensus 315 ~d--------------g~i~iwd~~~~~~~ 330 (583)
.+ ..+.+||+.+.+-.
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp BCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred eeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 53 35777888776543
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.63 E-value=0.39 Score=43.63 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=78.7
Q ss_pred CCceEEEEccCCcEEEEEec-------------CceEEEEEcccCcc-------ccccCCCCCCCcccCeeEEEEeCCCc
Q psy14906 413 SKPTCVYITHCGNFVLIGYS-------------SGHVDRFNIQSGAH-------RGSYGHDNQPGHVGGVRGVVSDNLNQ 472 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~~~-------~~~~~~~~~~~h~~~v~~~~~s~~~~ 472 (583)
.....+.|.|||.+.++.+. .|.|.-++....-. ...+. .+|. ....++|+|++.
T Consensus 140 H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a----~G~R-Np~Gla~dp~G~ 214 (347)
T 3das_A 140 HNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS----YGHR-NVQGLAWDDKQR 214 (347)
T ss_dssp CCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE----BCCS-BCCEEEECTTCC
T ss_pred ccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe----eCCC-CcceEEECCCCC
Confidence 34567899999976665332 35565555542200 00110 2332 356899999887
Q ss_pred EEEEe-ecCCcEEEEEccCCC----------------CCceEEeecc-CCeeeEEeccCCcEEEEEeCCceEEEEEcccc
Q psy14906 473 IVISG-GNDQTVKVWHFKQTG----------------KPPLRSIKLD-NGISFFRTHQESSMLAVCLDDFTVNIIDIDTC 534 (583)
Q Consensus 473 ~l~s~-~~dg~i~iwd~~~~~----------------~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 534 (583)
+.++= +.|+.=.|--+..+. ..++..+... .....++|. +|.++...-..+.|....++..
T Consensus 215 L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 215 LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 55543 233322232222221 0122222222 245566666 4666666666667777777654
Q ss_pred ce----EEeecccccceeeEEecCCCcEEEEEe
Q psy14906 535 TI----IRKLSGHMGQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 535 ~~----~~~~~~h~~~v~~l~~s~d~~~l~s~~ 563 (583)
.. ...+.+...++.+|+..|||.++++.+
T Consensus 294 ~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 294 AAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 32 233444457899999999998776654
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0082 Score=54.23 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=60.8
Q ss_pred CCcEEEEeecCCcEEEEEccCCCCCceEEeeccCCee--------eEEec-----cCCcEEEEEeCCceEEEEEccccce
Q psy14906 470 LNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGIS--------FFRTH-----QESSMLAVCLDDFTVNIIDIDTCTI 536 (583)
Q Consensus 470 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--------~~~~s-----~~~~~l~~~~~dg~i~i~d~~~~~~ 536 (583)
.+..+++++.+|.+...|+.++ +.+..+....+.. |.... ..+..++.+..+..+.+.+ ++|+
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~- 185 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNG--EIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA- 185 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTC--CEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-
T ss_pred cCCEEEEEecCCEEEEEECCCC--cEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-
Confidence 4567889999999999999999 8888876553211 11111 1235677777777777766 4453
Q ss_pred EEeec-----cccc--ce-eeEEecCCCcEEEEEeCCCeEEEEeCCCcccc
Q psy14906 537 IRKLS-----GHMG--QL-TDADFSPDSRWLITASMDCTIRVWDIPSSQLI 579 (583)
Q Consensus 537 ~~~~~-----~h~~--~v-~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~~~ 579 (583)
+..++ .+.- .+ ..-..+.|+.++ .++.||.|.-.|..+|+.+
T Consensus 186 ~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 186 SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEE
T ss_pred eEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCcEE
Confidence 22211 1000 00 001112356654 4677888888888877764
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.07 E-value=0.26 Score=47.07 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=62.3
Q ss_pred CCceEEEEccCCcEEEEEecCceEEEEEcccCcccc--ccCCCCC-CCcccCeeEEEEeCC---CcEE-EEeec------
Q psy14906 413 SKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRG--SYGHDNQ-PGHVGGVRGVVSDNL---NQIV-ISGGN------ 479 (583)
Q Consensus 413 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~-~~h~~~v~~~~~s~~---~~~l-~s~~~------ 479 (583)
.....++|.|+|+++++-...+.|++++..++.... .+..... .........|+|+|+ +..| ++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 457899999999977765544578888765554322 2211100 113567889999995 4444 44332
Q ss_pred ------CCcEEEEEccCCCCC------ceEEeec--cCCeeeEEeccCCcEEEEEe
Q psy14906 480 ------DQTVKVWHFKQTGKP------PLRSIKL--DNGISFFRTHQESSMLAVCL 521 (583)
Q Consensus 480 ------dg~i~iwd~~~~~~~------~~~~~~~--~~~v~~~~~s~~~~~l~~~~ 521 (583)
...|.-+++...... .+..+.. ......++|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234666665432101 1111211 13478899999998666644
No 343
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.83 E-value=0.81 Score=40.34 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=110.1
Q ss_pred eEEEEeeCCeEEEEecCCcEEEeecCCCCCCeEEEEeeC-eEEEEEcCCeEEEEeccce-eeeeecccCccEEEEccCCC
Q psy14906 45 TLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSDF-FHIYTSANNIIYAWRRGID-IVGTYKGHTSPVHLILPFGP 122 (583)
Q Consensus 45 ~~i~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~i~vw~~~~~-~~~~~~~h~~~v~~is~~~~ 122 (583)
..++.. ++.|+.|-....-++..-......|..++... ..++.. |+.|..|-.+.. .+-....-...|..++.-..
T Consensus 35 h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~ 112 (282)
T 3qhy_B 35 HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW 112 (282)
T ss_dssp EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT
T ss_pred eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC
Confidence 334444 89999998665322221112344678888743 333344 999999975311 11111111346888866666
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEec
Q psy14906 123 HLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQ 202 (583)
Q Consensus 123 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 202 (583)
..+... ||.|..|-.....++.... .....|..++...+- .++ -. +|.+..|-......+..-..
T Consensus 113 hs~al~-~G~v~~wG~n~~gqlg~~~-----------~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~p~~ 177 (282)
T 3qhy_B 113 ASYALK-DGKVIAWGDDSDGQTTVPA-----------EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTVPAE 177 (282)
T ss_dssp EEEEEE-TTEEEEEECCTTSTTSCCG-----------GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSCCGG
T ss_pred EEEEEe-CCeEEEecCCCCCcCCCCc-----------cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCCcee
Confidence 666667 9999999865522211000 223456666554332 222 23 78888887543222211111
Q ss_pred cCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy14906 203 TWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275 (583)
Q Consensus 203 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w 275 (583)
....|..++...+.. ++. .||.|..|-....-.+..- ......|..++...... ++ -. ||.+..|
T Consensus 178 ~~~~v~~i~~G~~hs--~al--~~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~h~-~a-l~-~g~v~~w 242 (282)
T 3qhy_B 178 AQSGVDDVAGGIFHS--LAL--KDGKVIAWGDNRYKQTTVP-TEALSGVSAIASGEWYS-LA-LK-NGKVIAW 242 (282)
T ss_dssp GGSSEEEEEECSSEE--EEE--ETTEEEEEECCTTSTTCCC-GGGGSSCCEEEECSSCE-EE-EE-TTEEEEE
T ss_pred cCCCeEEEEecCCEE--EEE--ECCeEEEEECCCCCCCCCC-cccCCCceEEEcCCCEE-EE-EE-CCEEEEe
Confidence 124677776655532 333 5899999976543222111 11224566776544333 33 33 8999999
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.034 Score=50.21 Aligned_cols=113 Identities=10% Similarity=0.036 Sum_probs=72.2
Q ss_pred CcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEE---eCCCcEEEEe-ecCCcEEEEEccCCCCCceEEe
Q psy14906 424 GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVS---DNLNQIVISG-GNDQTVKVWHFKQTGKPPLRSI 499 (583)
Q Consensus 424 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~---s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~ 499 (583)
+..+++++.||.|+-+|..+|+....+.. ....++....- ..++..++.. ..||.|..++..++ .....+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~----~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G--~~~~~~ 83 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEP----ENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG--LQKLPL 83 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECG----GGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE--EEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecC----CccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC--cEEeee
Confidence 35789999999999999999998887732 11112211110 0133344443 57999999998776 444333
Q ss_pred eccCCee--eEEec-----------cCCcEEEEEeCCceEEEEEccccceEEeecc
Q psy14906 500 KLDNGIS--FFRTH-----------QESSMLAVCLDDFTVNIIDIDTCTIIRKLSG 542 (583)
Q Consensus 500 ~~~~~v~--~~~~s-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 542 (583)
.....+. -+... ..+..+++|+.+|.+...|+.+|+.+.++..
T Consensus 84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 3322111 12211 1466888999999999999999999988763
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.47 E-value=1.4 Score=39.92 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=64.3
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee--hhh---hhhccccceEEEEEecC----CCEEEEEe--C
Q psy14906 200 FIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV--ENQ---IKKAHRKVVTGAHFLYN----EPLLVTSS--P 268 (583)
Q Consensus 200 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~---~~~~~~~~v~~~~~~~~----~~~l~s~~--~ 268 (583)
+...-...+.|+|.|||. ++++--..|.|++++..+++. +.. +..........|+++|+ +.+.++-+ .
T Consensus 27 va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred eecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 333336778999999998 777766589999998765543 111 11223567889999995 43333322 3
Q ss_pred CCeEEEEEccCCC------CCcee-eEEec-cCCCCCeeEEEeeCCCCEEEEeeC
Q psy14906 269 DNTLKLWIFDKAD------GNGRL-LRIRE-GHSAPPNYIQFYGNSSDNILSAAG 315 (583)
Q Consensus 269 d~~i~~w~~~~~~------~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 315 (583)
++.|.-|.++... ...+. +..+. ........+.|.| |+.+.++.+.
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd 159 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGE 159 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBC
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECC
Confidence 3444445443211 01122 22222 1122346789987 7776666554
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.40 E-value=1.9 Score=41.02 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCee--hhhhhh-----ccccceEEEEEecC---CCEEEEEeC------
Q psy14906 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQV--ENQIKK-----AHRKVVTGAHFLYN---EPLLVTSSP------ 268 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~-----~~~~~v~~~~~~~~---~~~l~s~~~------ 268 (583)
.....|+|.|+|+ ++++-...+.|++++..+++. +..+.. ........|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 5678999999998 666655445788888655432 222211 12456789999995 444444432
Q ss_pred -------CCeEEEEEccCCCCC---ceee-EEecc-CCCCCeeEEEeeCCCCEEEEeeC
Q psy14906 269 -------DNTLKLWIFDKADGN---GRLL-RIREG-HSAPPNYIQFYGNSSDNILSAAG 315 (583)
Q Consensus 269 -------d~~i~~w~~~~~~~~---~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~ 315 (583)
...|.-++++..... .+.+ ..+.. .......++|.| |+.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 123444443322111 1111 11221 123457899987 7776666554
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.49 E-value=4.4 Score=41.17 Aligned_cols=202 Identities=11% Similarity=0.086 Sum_probs=100.9
Q ss_pred cCCCEEEEEeCC----CcEEEEEcCCCcEEEEe-eccCCceEEecccCCcceEEEeeCCCCCEEEEEecC------CeEE
Q psy14906 119 PFGPHLISVDEE----SNVKVWDIKAEETYLEL-SFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN------KKII 187 (583)
Q Consensus 119 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~ 187 (583)
.++..++.||.+ ..+.++|..+++-...- ....... +.....-.++.+..++++++.|+.+ ..+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~----p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEV----PVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCC----CCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCC----CccccceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 456666666643 46888888876543322 1100000 0112222333333267778887654 3578
Q ss_pred EEEccCCceeEE--EeccCCCeEEEEEecCCCCEEEEEcCCC--cEEEEeCCCCeehhhhh----hccccceEEEEEecC
Q psy14906 188 LHNILTDESLME--FIQTWGPVTALSFRTDGPPMMVSGSNTG--HLTVWNLEDRQVENQIK----KAHRKVVTGAHFLYN 259 (583)
Q Consensus 188 iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~ 259 (583)
+||..+.+-... +...... .+++...++. +++.|+.++ .+.+||..+.+-...-. ........++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFR-HSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBS-CEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCccc-ceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 899877533221 2111111 1222223666 788887654 69999998765322110 111112233555555
Q ss_pred -CCEEEEEeC--C-----CeEEEEEccCCCCC------ceeeEEeccCCCCCeeEEEeeCCCCEEEEeeC--------CC
Q psy14906 260 -EPLLVTSSP--D-----NTLKLWIFDKADGN------GRLLRIREGHSAPPNYIQFYGNSSDNILSAAG--------DS 317 (583)
Q Consensus 260 -~~~l~s~~~--d-----~~i~~w~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------dg 317 (583)
+++++.|+. + ..+..||+.. .. ...+.........-.++.... ++..++.|+. ..
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~--~~w~~~~~W~~~~~~p~~~R~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 626 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDA--ENATEPITVIKKLQHPLFQRYGSQIKYIT-PRKLLIVGGTSPSGLFDRTN 626 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECT--TCSSCCEEEEEEEECGGGCCBSCEEEEEE-TTEEEEECCBCSSCCCCTTT
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccC--CccccceEEEEcCCCCCCCcccceEEEeC-CCEEEEECCccCCCCCCCCC
Confidence 667777765 2 3466775543 23 233333211111112233331 3777777774 34
Q ss_pred cEEEEEcccccc
Q psy14906 318 TLRIFNTKSETS 329 (583)
Q Consensus 318 ~i~iwd~~~~~~ 329 (583)
.+.+||+.+...
T Consensus 627 ~v~~yd~~t~~W 638 (695)
T 2zwa_A 627 SIISLDPLSETL 638 (695)
T ss_dssp SEEEEETTTTEE
T ss_pred eEEEEECCCCeE
Confidence 588899887654
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.01 E-value=1.5 Score=44.69 Aligned_cols=150 Identities=12% Similarity=0.050 Sum_probs=82.3
Q ss_pred CCcEEEEEecC------ceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCC--cEEEEEccCCCCC
Q psy14906 423 CGNFVLIGYSS------GHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQ--TVKVWHFKQTGKP 494 (583)
Q Consensus 423 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~ 494 (583)
+++.++.|+.+ ..+.+||..+..-...-.. .. ...-.+++...++++++.|+.++ .+.+||..+. .
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~---p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--~ 524 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL---SH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE--I 524 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC---SB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT--E
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC---CC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC--c
Confidence 77888887754 3588899887543332111 11 11112233324788888888655 6889998875 2
Q ss_pred ceEEee---c--c-CCeeeEEeccC-CcEEEEEeC--C-----ceEEEEEccccce-----EEeecc--cccce-eeEEe
Q psy14906 495 PLRSIK---L--D-NGISFFRTHQE-SSMLAVCLD--D-----FTVNIIDIDTCTI-----IRKLSG--HMGQL-TDADF 552 (583)
Q Consensus 495 ~~~~~~---~--~-~~v~~~~~s~~-~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~--h~~~v-~~l~~ 552 (583)
-..... . . ....++.+..+ +++++.|+. + +.+.+||+.+.+- ...+.. ..... .++..
T Consensus 525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY 604 (695)
T ss_dssp EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence 211111 1 1 12233555554 677777765 2 4689999987761 111211 11111 12223
Q ss_pred cCCCcEEEEEeCC--------CeEEEEeCCCccc
Q psy14906 553 SPDSRWLITASMD--------CTIRVWDIPSSQL 578 (583)
Q Consensus 553 s~d~~~l~s~~~d--------~~i~vw~~~~~~~ 578 (583)
..++++++.|+.+ ..+.+||+.+++.
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 3337777877743 4589999887654
No 349
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.88 E-value=9 Score=38.85 Aligned_cols=94 Identities=10% Similarity=0.074 Sum_probs=55.2
Q ss_pred cCceEEEEEcccCc-------cccc-cCCCCCCCcccCeeEEEEeCCCcEEEEeecCCc--EEEEEccCCCCC-ceEE-e
Q psy14906 432 SSGHVDRFNIQSGA-------HRGS-YGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQT--VKVWHFKQTGKP-PLRS-I 499 (583)
Q Consensus 432 ~dg~i~i~d~~~~~-------~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~--i~iwd~~~~~~~-~~~~-~ 499 (583)
..+.|...++.++. .... +. ......+..+.+..+ .++++...++. +.++++.++ . .... +
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g--~~~~~~~i 390 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFT----PTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENE--QWTKPVVL 390 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEEC----CCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETT--EECCCEEE
T ss_pred CCCeEEEEECCcccccccccccceEEEC----CCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCC--ceEEEecc
Confidence 46678888887642 1111 21 234556788888875 56677777765 667776654 2 1222 3
Q ss_pred ec--cCCeeeEEeccCCcEEEE-EeC---CceEEEEEcc
Q psy14906 500 KL--DNGISFFRTHQESSMLAV-CLD---DFTVNIIDID 532 (583)
Q Consensus 500 ~~--~~~v~~~~~s~~~~~l~~-~~~---dg~i~i~d~~ 532 (583)
.. .+.+.....++++..++. .+. -+.+..+|+.
T Consensus 391 ~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 391 KLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 33 245666666777764443 332 3678888876
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.51 E-value=8.8 Score=35.67 Aligned_cols=136 Identities=9% Similarity=0.012 Sum_probs=62.2
Q ss_pred CceEEEEccC-CcEEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCC-CcEEEEeec-----------C
Q psy14906 414 KPTCVYITHC-GNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNL-NQIVISGGN-----------D 480 (583)
Q Consensus 414 ~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~-----------d 480 (583)
.+.++.++|+ ...++++...+ |...+- .++.-..+...........+.+++++|. ...|..+.. +
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~ 310 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG 310 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence 4678888886 45666666555 444332 2222222210000111134567888763 333333321 3
Q ss_pred CcEEEEEccCCCCCceEEeec--cC-------CeeeEEeccCC-cEEEEEeCCceEEEEEccccceEEeecccccceeeE
Q psy14906 481 QTVKVWHFKQTGKPPLRSIKL--DN-------GISFFRTHQES-SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDA 550 (583)
Q Consensus 481 g~i~iwd~~~~~~~~~~~~~~--~~-------~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l 550 (583)
+...+|....+. +.-..+.. .. ....++++|.. ..|++++.++.|..- .+.++.-..+..+-..+.++
T Consensus 311 ~~~~~~~S~DgG-~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v 388 (394)
T 3b7f_A 311 GKPAVYVTRDAG-ESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAV 388 (394)
T ss_dssp SSCCEEEESSTT-SCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEE
T ss_pred CceeEEEECCCC-CCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEE
Confidence 334566555432 22222211 11 01357888743 456666656554432 23344333444344456676
Q ss_pred Eec
Q psy14906 551 DFS 553 (583)
Q Consensus 551 ~~s 553 (583)
+|.
T Consensus 389 ~~~ 391 (394)
T 3b7f_A 389 QSA 391 (394)
T ss_dssp EEE
T ss_pred EEe
Confidence 663
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.37 E-value=11 Score=36.44 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=58.6
Q ss_pred ceEEeeccCCeeeEEeccCCcEEEEEeC-CceEEEEEccccce-------------EEeecccccceeeEEecCCCcEEE
Q psy14906 495 PLRSIKLDNGISFFRTHQESSMLAVCLD-DFTVNIIDIDTCTI-------------IRKLSGHMGQLTDADFSPDSRWLI 560 (583)
Q Consensus 495 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~-------------~~~~~~h~~~v~~l~~s~d~~~l~ 560 (583)
.++.+........+.++|||+++++++. +.++.++|++.... ..+.+ -.-.....+|.++|.-..
T Consensus 315 ~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYT 393 (638)
T 3sbq_A 315 FTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYT 393 (638)
T ss_dssp SEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEE
T ss_pred eEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEe
Confidence 3444555567778999999998887665 67999999874211 22233 234567889999996666
Q ss_pred EEeCCCeEEEEeCCCc
Q psy14906 561 TASMDCTIRVWDIPSS 576 (583)
Q Consensus 561 s~~~d~~i~vw~~~~~ 576 (583)
|.-.|..|.-|++...
T Consensus 394 tlfidSqvvkWni~~a 409 (638)
T 3sbq_A 394 TLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EETTTTEEEEEEHHHH
T ss_pred eeeecceEEEEeccHH
Confidence 7779999999999653
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.92 E-value=7.8 Score=33.98 Aligned_cols=67 Identities=7% Similarity=-0.072 Sum_probs=35.5
Q ss_pred cceEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccc
Q psy14906 249 KVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
..|..++.... +.+.-. ||.+..|-.+.....+.+ ......|..++.. ....++. . ||.++.|-...
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p----~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMP----AATQSGVDAIAAG--NYHSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCC----GGGGSCCCEEEEC--SSEEEEE-E-TTEEEEEECCT
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCC----ccCCCCEEEEEeC--CCEEEEE-E-CCEEEEeeCCC
Confidence 36777766433 333335 899999954322111111 1122357777764 2333343 4 89999997654
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.39 E-value=10 Score=40.19 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=29.4
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeecc
Q psy14906 118 LPFGPHLISVDEESNVKVWDIKAEETYLELSFD 150 (583)
Q Consensus 118 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 150 (583)
.++..++++.+.|+++|+|++.+++++.+..+.
T Consensus 244 ~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 244 LSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp ETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 667789999999999999999999999987653
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.95 E-value=24 Score=32.62 Aligned_cols=156 Identities=7% Similarity=0.008 Sum_probs=72.3
Q ss_pred cceEEEeeCCC-CCEEEEEecCCeEEEEEccCCceeEEEecc-------------CCCeEEEEEecCCCCEEEEEcCCCc
Q psy14906 163 SCVNVLEPSPV-VDIIGVGLSNKKIILHNILTDESLMEFIQT-------------WGPVTALSFRTDGPPMMVSGSNTGH 228 (583)
Q Consensus 163 ~~i~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~s~~~dg~ 228 (583)
..+.+|.++|. ...|.++..++.|...+ ..++.-..+... ...+.++.+.|+....++.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 46889999983 44555555545444332 223322222110 124889999987433566666544
Q ss_pred EEEEeCCCCeehhhhhhcc-c---cceEEEEEecC-CCEEEEEeC-----------CCeEEEEEccCCCCCceeeEE-ec
Q psy14906 229 LTVWNLEDRQVENQIKKAH-R---KVVTGAHFLYN-EPLLVTSSP-----------DNTLKLWIFDKADGNGRLLRI-RE 291 (583)
Q Consensus 229 i~vwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~-~~~l~s~~~-----------d~~i~~w~~~~~~~~~~~~~~-~~ 291 (583)
|...+-. ++.-..+.... . ..+.++++.|. ...+..+.. ++...+|.-.......+.+.. +.
T Consensus 255 l~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 255 IYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEEeCCC-CCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 4444322 22111111111 1 34567788763 333444421 233445532221112222211 11
Q ss_pred cCCC----CCeeEEEeeCCCCEEEEeeCCCcEEE
Q psy14906 292 GHSA----PPNYIQFYGNSSDNILSAAGDSTLRI 321 (583)
Q Consensus 292 ~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~i 321 (583)
.... ....++++|.+...|+.++.++.|..
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 1000 12457887755566777766665543
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.77 E-value=22 Score=38.56 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=31.1
Q ss_pred ceeeEEecCCCcEEEEEeCCCeEEEEeCCCcccccc
Q psy14906 546 QLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDC 581 (583)
Q Consensus 546 ~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~ 581 (583)
.+.+++..++..+|++-+.|+++|+|++.+++++.+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 455666778889999999999999999999998875
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=83.15 E-value=42 Score=34.01 Aligned_cols=224 Identities=15% Similarity=0.173 Sum_probs=117.3
Q ss_pred EEEeCCCceEEEEeeCC----eEEEEecCCcEEEee-cCC-CCC------CeEEEEe-eC-eEEEEE-----------cC
Q psy14906 37 RFIRRRKETLFVTCVGK----AFHVYGCNHFKLLSV-SPQ-HED------DITCLSS-DF-FHIYTS-----------AN 91 (583)
Q Consensus 37 ~~~p~~~~~~i~~~~~~----~i~v~d~~~~~~~~~-~~~-h~~------~v~~~~~-~~-~~~~~~-----------~~ 91 (583)
+++|+++..++..+.+| .++++|+++++.+.- +.+ -+. ....+++ |. .++++. ..
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 37788888888877555 699999999998742 221 111 0122243 33 333332 22
Q ss_pred CeEEEEeccc---eeeeeecccCccE--EE-EccCCCE-----EEEEeCC---CcEEEEEcCC--CcEEEEeeccCCceE
Q psy14906 92 NIIYAWRRGI---DIVGTYKGHTSPV--HL-ILPFGPH-----LISVDEE---SNVKVWDIKA--EETYLELSFDNDTFK 155 (583)
Q Consensus 92 ~~i~vw~~~~---~~~~~~~~h~~~v--~~-is~~~~~-----l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~ 155 (583)
..|+.|.++. +-...+++....+ .. +++++++ +++.+.+ ..+.+.+... ++ +..+...
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~----- 289 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP----- 289 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC-----
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC-----
Confidence 4799999753 2344555544433 22 2667663 4443322 4466666553 32 3333321
Q ss_pred EecccCCcceEEEeeCCCCCEEEEE----------ecCCeEEEEEccCCc-------eeEE-Ee-ccCCCeEEEEEecCC
Q psy14906 156 IMGKRWNSCVNVLEPSPVVDIIGVG----------LSNKKIILHNILTDE-------SLME-FI-QTWGPVTALSFRTDG 216 (583)
Q Consensus 156 ~~~~~~~~~i~~~~~s~~~~~l~~~----------~~d~~i~iw~~~~~~-------~~~~-~~-~~~~~v~~~~~~~~~ 216 (583)
.... +..+.++.+++.. ...+.|...++.++. .... +. .....+..+.+..+.
T Consensus 290 -----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (711)
T 4hvt_A 290 -----SDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDR 361 (711)
T ss_dssp -----TTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSC
T ss_pred -----Ccce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCE
Confidence 1111 2233455554422 246789999987642 2222 32 223466778887653
Q ss_pred CCEEEEEcCCCc--EEEEeCCCCe-ehhh-hhhccccceEEEEEecCCCE-EEEEeC---CCeEEEEE
Q psy14906 217 PPMMVSGSNTGH--LTVWNLEDRQ-VENQ-IKKAHRKVVTGAHFLYNEPL-LVTSSP---DNTLKLWI 276 (583)
Q Consensus 217 ~~~l~s~~~dg~--i~vwd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~-l~s~~~---d~~i~~w~ 276 (583)
++++...++. +.++|+.+++ .... +.....+.+......+++.. +++.+. -+.+..++
T Consensus 362 --l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d 427 (711)
T 4hvt_A 362 --VFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWV 427 (711)
T ss_dssp --EEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred --EEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEe
Confidence 7888777765 6677776664 2222 21111245665666666653 333332 24455553
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.32 E-value=33 Score=31.47 Aligned_cols=141 Identities=6% Similarity=0.080 Sum_probs=82.7
Q ss_pred CcEEEEEcCCC--cEEEEeeccCCceEEecccCCcceEEEeeC---CC----CCEEEEEe-cCCeEEEEEccCCceeEEE
Q psy14906 131 SNVKVWDIKAE--ETYLELSFDNDTFKIMGKRWNSCVNVLEPS---PV----VDIIGVGL-SNKKIILHNILTDESLMEF 200 (583)
Q Consensus 131 g~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~----~~~l~~~~-~d~~i~iw~~~~~~~~~~~ 200 (583)
-.|.+||+.++ +.++++.+..... .....+..+++. |+ +.++..+. ..+-|.|+|+.+++.-+.+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~-----~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLV-----EKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGC-----CCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCCCCceeEEEEECCHHhc-----ccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 47889999999 9999998764433 224567888877 22 23333332 4578999999988665544
Q ss_pred e--------------cc----CCCeEEEEEecC----CCCEEEEEcCCCcEEEEeCCC-----Ceehhhhh-hccc---c
Q psy14906 201 I--------------QT----WGPVTALSFRTD----GPPMMVSGSNTGHLTVWNLED-----RQVENQIK-KAHR---K 249 (583)
Q Consensus 201 ~--------------~~----~~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~-~~~~---~ 249 (583)
. +. ...+..|+++|+ ++ .|+-....+ -++|.+.+ ......+. .+.. .
T Consensus 198 ~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~-~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s 275 (381)
T 3q6k_A 198 HPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNR-PAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYN 275 (381)
T ss_dssp CGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCC-EEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTC
T ss_pred cCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCe-EEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCC
Confidence 2 00 146788889987 55 344333322 23333321 11111110 1222 2
Q ss_pred ceEEEEEe-cCCCEEEEEeCCCeEEEEEcc
Q psy14906 250 VVTGAHFL-YNEPLLVTSSPDNTLKLWIFD 278 (583)
Q Consensus 250 ~v~~~~~~-~~~~~l~s~~~d~~i~~w~~~ 278 (583)
.-..+++. .+|.++++--....|..|+.+
T Consensus 276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~ 305 (381)
T 3q6k_A 276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQ 305 (381)
T ss_dssp CEEEEEECTTTCEEEEEESSSSEEEEEETT
T ss_pred CcceEEEeCCCCeEEEEeccCCeEEEEeCC
Confidence 23345665 577777777788899999654
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.98 E-value=39 Score=32.11 Aligned_cols=112 Identities=9% Similarity=0.046 Sum_probs=59.4
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCe---ehhh----hhhc----cccceEEEEEecC----CCEEEEEeC-
Q psy14906 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQ---VENQ----IKKA----HRKVVTGAHFLYN----EPLLVTSSP- 268 (583)
Q Consensus 205 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~----~~~~----~~~~v~~~~~~~~----~~~l~s~~~- 268 (583)
...+.|+|.|++...|+++...|.|++++..... .+.. +..+ .......|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 5668999999984224455568999999754321 1111 1011 1457889999996 444343322
Q ss_pred -C----------CeEEEEEccCCC------CCceeeEEec--cCCCCCeeEEEeeCCCCEEEEeeCCC
Q psy14906 269 -D----------NTLKLWIFDKAD------GNGRLLRIRE--GHSAPPNYIQFYGNSSDNILSAAGDS 317 (583)
Q Consensus 269 -d----------~~i~~w~~~~~~------~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg 317 (583)
+ ..|.-|.++... ...+.+..+. .....-..|.|.| |+.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCC
Confidence 1 133335443211 0122332222 1122457899997 787666665533
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.84 E-value=39 Score=32.08 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=21.2
Q ss_pred cceEEEEEecCCC-EEEEEeCCCeEEEEE
Q psy14906 249 KVVTGAHFLYNEP-LLVTSSPDNTLKLWI 276 (583)
Q Consensus 249 ~~v~~~~~~~~~~-~l~s~~~d~~i~~w~ 276 (583)
.....|+|.|+|. .|+.+...|.|++++
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~ 42 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILT 42 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEe
Confidence 3457899999996 455566789888884
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.24 E-value=29 Score=36.70 Aligned_cols=39 Identities=5% Similarity=0.022 Sum_probs=34.2
Q ss_pred cceEEEeeCCCCCEEEEEecCCeEEEEEccCCceeEEEe
Q psy14906 163 SCVNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFI 201 (583)
Q Consensus 163 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 201 (583)
..+.+++..++..++.+-+.|+++++|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 467788888899999999999999999999999888754
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.97 E-value=8.5 Score=41.79 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=29.6
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcEEEEeecc
Q psy14906 118 LPFGPHLISVDEESNVKVWDIKAEETYLELSFD 150 (583)
Q Consensus 118 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 150 (583)
.++..+|++.+.|+++|+|++.+++++.+..+.
T Consensus 246 ~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 246 LSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp ETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred cCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 567789999999999999999999999987753
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=74.71 E-value=4.6 Score=40.31 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=32.8
Q ss_pred cEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeec
Q psy14906 113 PVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSF 149 (583)
Q Consensus 113 ~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 149 (583)
.|.++..+..+|++.+.|.++|+||+.+++++.+...
T Consensus 223 ~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666677889999999999999999999999998875
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=74.07 E-value=49 Score=29.57 Aligned_cols=150 Identities=9% Similarity=0.024 Sum_probs=80.4
Q ss_pred CcEEEEEecCceEEEEEcccCcccc---ccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCC-----CCc
Q psy14906 424 GNFVLIGYSSGHVDRFNIQSGAHRG---SYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTG-----KPP 495 (583)
Q Consensus 424 ~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~ 495 (583)
+.+++..+.+|.++...+..-.... -.....+.. ...+..+........++..+.+|.+..+....-. ..-
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G 184 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG 184 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC
Confidence 5678888999999998875332211 000001122 2555565555555667788888998888775420 011
Q ss_pred eEEe--eccCCeeeEEeccCCc-EEEEEeCCceEEEEEccccce-------EEe---ecccccceeeEEecCCCcEEEEE
Q psy14906 496 LRSI--KLDNGISFFRTHQESS-MLAVCLDDFTVNIIDIDTCTI-------IRK---LSGHMGQLTDADFSPDSRWLITA 562 (583)
Q Consensus 496 ~~~~--~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~-------~~~---~~~h~~~v~~l~~s~d~~~l~s~ 562 (583)
++.+ .....|.++...+++. .+++.+..|..+..++..... +.. ++.....+..+....++..++..
T Consensus 185 V~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~i 264 (323)
T 1wp5_A 185 VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQ 264 (323)
T ss_dssp EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEE
Confidence 1222 2234566665444455 788888898888887754211 111 22112234433222333345555
Q ss_pred eCCCeEEEEeCC
Q psy14906 563 SMDCTIRVWDIP 574 (583)
Q Consensus 563 ~~d~~i~vw~~~ 574 (583)
+..|.+.-..+.
T Consensus 265 t~~g~~ir~~~~ 276 (323)
T 1wp5_A 265 TEKSFIETIKVG 276 (323)
T ss_dssp ETTSCEEEEEGG
T ss_pred eCCCeEEEEEhh
Confidence 666766555554
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.76 E-value=44 Score=28.98 Aligned_cols=158 Identities=14% Similarity=0.086 Sum_probs=94.5
Q ss_pred CCceEEEEcc-CCcEEEEEecCceEEEEEcccCccccc--cCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEcc
Q psy14906 413 SKPTCVYITH-CGNFVLIGYSSGHVDRFNIQSGAHRGS--YGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFK 489 (583)
Q Consensus 413 ~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 489 (583)
..+..+.... ++.+++..+.+|.++...+..-. ... .....+. ....+..+........++..+..|.+..+...
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 5666665422 56789999999999999876543 110 0000012 23456666655566678888889998888765
Q ss_pred CCCCCce---------EEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccce-------EEeecccccceeeEEec
Q psy14906 490 QTGKPPL---------RSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI-------IRKLSGHMGQLTDADFS 553 (583)
Q Consensus 490 ~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~h~~~v~~l~~s 553 (583)
.- +.. ..+.....+..+...+++..++..+..|.++...+..... +..+ ...+.+..+...
T Consensus 146 ei--p~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~ 222 (276)
T 3no0_A 146 EV--PPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI 222 (276)
T ss_dssp GS--CBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE
T ss_pred hC--CCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe
Confidence 42 111 1123335566666666677888999999999988754321 2222 123445444433
Q ss_pred CCCcEEEEEeCCCeEEE--EeCCC
Q psy14906 554 PDSRWLITASMDCTIRV--WDIPS 575 (583)
Q Consensus 554 ~d~~~l~s~~~d~~i~v--w~~~~ 575 (583)
.+...++..+.+|.+.. +++..
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 34445666677787776 76543
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=72.96 E-value=9.7 Score=38.08 Aligned_cols=33 Identities=30% Similarity=0.700 Sum_probs=27.4
Q ss_pred eeeEEecCCCcEEEEEeCCCeEEEEeCCCcccccc
Q psy14906 547 LTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDC 581 (583)
Q Consensus 547 v~~l~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~ 581 (583)
|.++.+ +..+|++-+.|.++|+|++.+++++.+
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t 256 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQD 256 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEe
Confidence 554444 578999999999999999999998765
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=72.43 E-value=54 Score=29.34 Aligned_cols=159 Identities=11% Similarity=0.064 Sum_probs=92.7
Q ss_pred CCceEEEEcc---CCcEEEEEecCceEEEEEcccCccccc--cCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEE
Q psy14906 413 SKPTCVYITH---CGNFVLIGYSSGHVDRFNIQSGAHRGS--YGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWH 487 (583)
Q Consensus 413 ~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 487 (583)
..|..+..-+ +..+++..+.+|.++...+........ .....+.. ...+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 4566554433 578999999999999988765332111 00001123 34555555555566788888889988887
Q ss_pred cc--CCCCCce---------EEeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccceE-------E--eecccccce
Q psy14906 488 FK--QTGKPPL---------RSIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTII-------R--KLSGHMGQL 547 (583)
Q Consensus 488 ~~--~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-------~--~~~~h~~~v 547 (583)
.. .- +.. -.+.....|.++...+++.+++..+..|.++.-.+...... . .+..-.+.+
T Consensus 174 ~~~~ei--p~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 174 ATDEAL--RPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp CCTTTS--CCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred Cccccc--CcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 76 22 111 11233456777766666778999999999998887543221 1 122112334
Q ss_pred eeEEecCCCcEEEEEeCCCeEEEEeCC
Q psy14906 548 TDADFSPDSRWLITASMDCTIRVWDIP 574 (583)
Q Consensus 548 ~~l~~s~d~~~l~s~~~d~~i~vw~~~ 574 (583)
..+....+...++..+.+|.+.-+++.
T Consensus 252 v~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 252 VGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 444443344455556667766666554
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=70.10 E-value=54 Score=28.43 Aligned_cols=160 Identities=8% Similarity=0.072 Sum_probs=95.4
Q ss_pred CCcceEEEeeCC-CCCEEEEEecCCeEEEEEccCCc------eeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q psy14906 161 WNSCVNVLEPSP-VVDIIGVGLSNKKIILHNILTDE------SLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWN 233 (583)
Q Consensus 161 ~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 233 (583)
....|..+.... +...++..+.+|.++-..+..-. ....+... +.+..+....... .++..+..|.+..++
T Consensus 66 ~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~-~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 66 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIASSVDET-HILLFTKKGRVARFS 143 (276)
T ss_dssp TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEECCSSC-EEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEEeCCCC-EEEEEECCCEEEEEE
Confidence 355566654421 56789999999999999876532 12223332 4555555554444 677778889888887
Q ss_pred CCC---------CeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCC---CCceeeEEeccCCCCCeeEE
Q psy14906 234 LED---------RQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKAD---GNGRLLRIREGHSAPPNYIQ 301 (583)
Q Consensus 234 ~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~~~~~v~~~~ 301 (583)
... |.....+ ...+.|.++...+++..++..+..|.++...++.-. ..++-+..+ ...+.+..+.
T Consensus 144 ~~eip~~gR~a~Gv~~i~L--~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~ 220 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKL--EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLI 220 (276)
T ss_dssp GGGSCBCCTTCCCEECCCC--CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEE
T ss_pred hhhCCCcCCCCCCEEEEcc--CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEE
Confidence 542 1222223 223567676666667788889999999888764321 112222223 2334455444
Q ss_pred EeeCCCCEEEEeeCCCcEEE--EEccc
Q psy14906 302 FYGNSSDNILSAAGDSTLRI--FNTKS 326 (583)
Q Consensus 302 ~~~~~~~~l~~~~~dg~i~i--wd~~~ 326 (583)
.. .+.+.++..+.+|.+.. ++...
T Consensus 221 ~~-~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 221 PI-KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EE-SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred Ee-CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 43 24456777788888887 77654
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=68.72 E-value=63 Score=28.65 Aligned_cols=197 Identities=8% Similarity=0.002 Sum_probs=111.6
Q ss_pred ccEEEEecCCceEEEeecCccccccee-eecccccccCCCCceEEEEccCCcEEEEEecCceEEEEEccc---------C
Q psy14906 375 NNIAAIHTGKNKVSLWSFYKSKMDDMF-LVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQS---------G 444 (583)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~---------~ 444 (583)
+.+++..+.+|.++-............ .............+..+........++..+..|.++-+.... |
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 445677788888877665433221110 000000111124455555555666788888899888777642 1
Q ss_pred ccccccCCCCCCCcccCeeEEEEeC---CCcEEEEeecCCcEEEEEccCCCC---CceE--EeeccCCeeeEEeccCCcE
Q psy14906 445 AHRGSYGHDNQPGHVGGVRGVVSDN---LNQIVISGGNDQTVKVWHFKQTGK---PPLR--SIKLDNGISFFRTHQESSM 516 (583)
Q Consensus 445 ~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~~~~~---~~~~--~~~~~~~v~~~~~s~~~~~ 516 (583)
..+..... -.....|.++...+ +..+|+..+..|.++.-.+..... .-+. .+.....+..+....+...
T Consensus 88 ~~i~~~l~---l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 88 QNISELIN---LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEK 164 (312)
T ss_dssp CBGGGTSC---CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCE
T ss_pred cChhhccC---CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCE
Confidence 11111111 12234455554443 456788889999999988764411 1111 1223345666555555667
Q ss_pred EEEEeCCceEEEEEccccc---------eEEeecccccceeeEEecCCCcEEEEEeCCCeEEEEeCCC
Q psy14906 517 LAVCLDDFTVNIIDIDTCT---------IIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPS 575 (583)
Q Consensus 517 l~~~~~dg~i~i~d~~~~~---------~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw~~~~ 575 (583)
++..+.+|.+..++...-. ..-.+.. .+.|..+..-.++..|++.+..|..+..++..
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 8889999999999875421 2222332 34566665555566788888899988887753
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.49 E-value=16 Score=35.95 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=43.2
Q ss_pred CeeeEEeccCCcEEEEEeCC------------ceEEEEEccccceEEeecccc-cceeeEEecCCCcEEEEE
Q psy14906 504 GISFFRTHQESSMLAVCLDD------------FTVNIIDIDTCTIIRKLSGHM-GQLTDADFSPDSRWLITA 562 (583)
Q Consensus 504 ~v~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~h~-~~v~~l~~s~d~~~l~s~ 562 (583)
..--|+|+|.|.++++-..+ ..+.+.+..+++....+.++. .+++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45668999999966664432 346666777787776666654 679999999999988765
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=66.21 E-value=23 Score=34.38 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=44.0
Q ss_pred CCeeeEEeccCCcEEEEEeC------------CceEEEEEccccceEEeeccc-ccceeeEEecCCCcEEEEE
Q psy14906 503 NGISFFRTHQESSMLAVCLD------------DFTVNIIDIDTCTIIRKLSGH-MGQLTDADFSPDSRWLITA 562 (583)
Q Consensus 503 ~~v~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~ 562 (583)
.....|.|.++|.+.++... ...+..++..++++...+.+. ...++.++|+||++.|..+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 35677999999987774332 226777787788876666543 3579999999999988765
No 371
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=64.46 E-value=92 Score=29.01 Aligned_cols=243 Identities=10% Similarity=-0.033 Sum_probs=121.3
Q ss_pred CCeEEEEeeC-eEEEEEcCCeEEEEecc--ce-----------eeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEc-
Q psy14906 74 DDITCLSSDF-FHIYTSANNIIYAWRRG--ID-----------IVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDI- 138 (583)
Q Consensus 74 ~~v~~~~~~~-~~~~~~~~~~i~vw~~~--~~-----------~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~- 138 (583)
..|..++... ..++...+|.|+.|-.+ ++ .....-.....|..|+.-....+....||.|..|-.
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCC
Confidence 3477777744 66777899999999642 11 011111123467777666677777788999999985
Q ss_pred -CCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccCC-----------------------
Q psy14906 139 -KAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILTD----------------------- 194 (583)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~----------------------- 194 (583)
....++-.-... .............|..++.. ....++-..+|.|+.|-....
T Consensus 155 ~n~~GqlG~~~~~-~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 231 (423)
T 3mvd_K 155 RDSHGNMGLTIDG-NKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL 231 (423)
T ss_dssp ECSSSEEESBTTB-CEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTS
T ss_pred CCCCCCcCcCCCC-CCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccccc
Confidence 322111100000 00000000223456565544 334455567888988864321
Q ss_pred ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhh--------h--hhccccceEEEEEecCCCEEE
Q psy14906 195 ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQ--------I--KKAHRKVVTGAHFLYNEPLLV 264 (583)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~--~~~~~~~v~~~~~~~~~~~l~ 264 (583)
.+..........|..++..... .++.-..+|.|..|-......+.. + .......|..++. ...+.+
T Consensus 232 ~p~~v~~~~~~~v~~i~~g~~~--~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht~ 307 (423)
T 3mvd_K 232 RPTQLIITRAKPFEAIWATNYC--TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHTV 307 (423)
T ss_dssp SCEEECCTTCCCEEEEEEETTE--EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEEE
T ss_pred CCeEEeecCCccEEEEEECCcE--EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeEE
Confidence 1111111122345565554332 233336789999996543211111 0 0001234555443 334455
Q ss_pred EEeCCCeEEEEEccCC------CCC--ceeeEEeccCCCCCeeEEEeeCCCCEEEEeeCCCcEEEEEccc
Q psy14906 265 TSSPDNTLKLWIFDKA------DGN--GRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 265 s~~~d~~i~~w~~~~~------~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
.-..+|.|..|=.+.. ... .............|..++.- ...-+....||.++.|=...
T Consensus 308 alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G---~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 308 ILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG---EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE---TTEEEEEETTSCEEEEECCT
T ss_pred EEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC---CCeEEEEcCCCCEEEECCCC
Confidence 5567888888843210 000 11112222223356666654 34555557889999997544
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=64.07 E-value=1.4e+02 Score=30.84 Aligned_cols=248 Identities=8% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhhhhc-----cccceEEEEEec-CCCEEEEEeCCCe----EE
Q psy14906 204 WGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKKA-----HRKVVTGAHFLY-NEPLLVTSSPDNT----LK 273 (583)
Q Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~s~~~d~~----i~ 273 (583)
.+.|.+|+++|..+..+++++..+.|...+=....-....... ....+.++++.| +...++.+..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Q ss_pred EEEccCCCCCceeeEEeccCCC------CCeeEEEeeCCCCEEEEeeCCCcEEEEEccccccceeeccchhhhhhhhhhc
Q psy14906 274 LWIFDKADGNGRLLRIREGHSA------PPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASANRNNLKRKN 347 (583)
Q Consensus 274 ~w~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 347 (583)
||.-.......+.+..-..... .+..+++.|.+.+.++.+...+.|..=+=....-.+...........
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~----- 168 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNG----- 168 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTT-----
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCC-----
Q ss_pred chhccccccCCCccceeeeecccccccccEEEEecCCceEEEeecCcccccceeeecccccccCCCCceEEEEcc-CCcE
Q psy14906 348 RLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITH-CGNF 426 (583)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 426 (583)
..+..+.++| ++..
T Consensus 169 -----------------------------------------------------------------~~~~~i~~~p~~~~~ 183 (789)
T 1sqj_A 169 -----------------------------------------------------------------IGYTSVIFDPERNGT 183 (789)
T ss_dssp -----------------------------------------------------------------TCEEEEEECTTSTTC
T ss_pred -----------------------------------------------------------------CCeEEEEECCCCCCE
Q ss_pred EEEEecCceEEEEEcccCccccccCCCCCCCcccCe------------------eEEEEeCCCcEEEEe---------ec
Q psy14906 427 VLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGV------------------RGVVSDNLNQIVISG---------GN 479 (583)
Q Consensus 427 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v------------------~~~~~s~~~~~l~s~---------~~ 479 (583)
++++..+..-.......|+.-..+ ..-.... ..+++.|....|+.+ +.
T Consensus 184 ~~~~~~~~~~v~~S~DgG~TW~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~ 258 (789)
T 1sqj_A 184 IYASATAPQGMYVTHDGGVSWEPV-----AGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVT 258 (789)
T ss_dssp EEEEESSTTCEEEESSTTSSCEEC-----TTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCC
T ss_pred EEEEEcCCCeEEEEcCCCcCcccC-----CCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCC
Q ss_pred CCcEEEEEccCCCCCceEEeeccC---------------CeeeEEecc-CCcEEEEEeCC-------ceEEE
Q psy14906 480 DQTVKVWHFKQTGKPPLRSIKLDN---------------GISFFRTHQ-ESSMLAVCLDD-------FTVNI 528 (583)
Q Consensus 480 dg~i~iwd~~~~~~~~~~~~~~~~---------------~v~~~~~s~-~~~~l~~~~~d-------g~i~i 528 (583)
.+.|..-+-... .-........ .+..++++| +...++++..+ +.|..
T Consensus 259 ~g~l~~S~DgG~--tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~ 328 (789)
T 1sqj_A 259 FGEVWRQNRTSG--AWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYL 328 (789)
T ss_dssp CCCEEEEETTTC--CEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEE
T ss_pred CceEEEEeCCCC--ceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEE
No 373
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=64.01 E-value=90 Score=28.71 Aligned_cols=268 Identities=11% Similarity=0.007 Sum_probs=125.8
Q ss_pred CceEEEEeeCCeEEEEecCC-cEE----------EeecC-CCCCCeEEEEeeC-eEEEEEcCCeEEEEeccc--e-----
Q psy14906 43 KETLFVTCVGKAFHVYGCNH-FKL----------LSVSP-QHEDDITCLSSDF-FHIYTSANNIIYAWRRGI--D----- 102 (583)
Q Consensus 43 ~~~~i~~~~~~~i~v~d~~~-~~~----------~~~~~-~h~~~v~~~~~~~-~~~~~~~~~~i~vw~~~~--~----- 102 (583)
.+.+++...++.|..|-.+. +++ ...+. .....|..++... ..++...+|.|..|-.+. +
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 34455566888899996543 111 01111 0122455666533 556677899999996321 1
Q ss_pred -----eeeeec---ccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCcE--------EEEe-eccCCceEEecccCCcce
Q psy14906 103 -----IVGTYK---GHTSPVHLILPFGPHLISVDEESNVKVWDIKAEET--------YLEL-SFDNDTFKIMGKRWNSCV 165 (583)
Q Consensus 103 -----~~~~~~---~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~i 165 (583)
....+. .....+..++.-....+....||.|..|-.....+ .... ... ......|
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~--------~l~~~~i 161 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIE--------SLRGIEV 161 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG--------GGTTSCE
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEec--------ccCCCeE
Confidence 111111 12223345566666777778899999997543110 0000 000 0112345
Q ss_pred EEEeeCCCCCEEEEEecCCeEEEEEccC-Cc----------eeEEEe-ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q psy14906 166 NVLEPSPVVDIIGVGLSNKKIILHNILT-DE----------SLMEFI-QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWN 233 (583)
Q Consensus 166 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~-~~----------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 233 (583)
..++.. ....++-..+|.|..|-... ++ ....+. .....|..++...... ..+.-..+|.|..|-
T Consensus 162 ~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~-~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 162 VDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA-QTLCLTDDDTVWSWG 238 (389)
T ss_dssp EEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSC-EEEEEETTTEEEEEE
T ss_pred EEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCc-EEEEEccCCEEEEEe
Confidence 555543 34455556788888886432 11 011111 1223566666544223 556666789999996
Q ss_pred CCCCee-----------hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCC----C--C-ceeeEEecc-CC
Q psy14906 234 LEDRQV-----------ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKAD----G--N-GRLLRIREG-HS 294 (583)
Q Consensus 234 ~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~----~--~-~~~~~~~~~-~~ 294 (583)
....-. ...+.......|..++.. ....+.-..+|.|..|=.+... + . ......... ..
T Consensus 239 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~ 316 (389)
T 3kci_A 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQG 316 (389)
T ss_dssp CCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred CCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCC
Confidence 542111 111101112245555543 3344445678889888432100 0 0 011111111 12
Q ss_pred CCCeeEEEeeCCCCEEEEeeCCCcEEEEEccc
Q psy14906 295 APPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 295 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
..|..++. .....+....||.++.|=...
T Consensus 317 ~~v~~ia~---G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 317 KKVIAIAT---GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CCEEEEEE---CSSEEEEEETTCCEEEEECCT
T ss_pred CCEEEEEe---ccCeEEEECCCCCEEEeeCCC
Confidence 34555554 344566667899999997654
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=60.94 E-value=1e+02 Score=28.32 Aligned_cols=222 Identities=13% Similarity=0.079 Sum_probs=113.6
Q ss_pred CCceEEEEeeCCeEEEEecCCc-----------EEEeecCC-CCCCe--EEEEe-eCeEEEEEcCCeEEEEeccc-----
Q psy14906 42 RKETLFVTCVGKAFHVYGCNHF-----------KLLSVSPQ-HEDDI--TCLSS-DFFHIYTSANNIIYAWRRGI----- 101 (583)
Q Consensus 42 ~~~~~i~~~~~~~i~v~d~~~~-----------~~~~~~~~-h~~~v--~~~~~-~~~~~~~~~~~~i~vw~~~~----- 101 (583)
+....++...++.|..|-.... .....+.. ....+ .+++. ....++...+|.|+.|-.+.
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG 140 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCC
Confidence 4455566678899999964421 11111211 22233 33433 33566778899999996421
Q ss_pred -------eeeeeecc-cCccEEEEccCCCEEEEEeCCCcEEEEEcCC-Cc--------EEEEeeccCCceEEecccCCcc
Q psy14906 102 -------DIVGTYKG-HTSPVHLILPFGPHLISVDEESNVKVWDIKA-EE--------TYLELSFDNDTFKIMGKRWNSC 164 (583)
Q Consensus 102 -------~~~~~~~~-h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~ 164 (583)
.....+.. ....|..|+.-....+....+|.|..|-... |+ ........ ......
T Consensus 141 ~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~--------~~~~~~ 212 (389)
T 3kci_A 141 HGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVE--------ALQGHR 212 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG--------GGTTSC
T ss_pred CCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEec--------ccCCCe
Confidence 11111222 1236777766667777778899999997543 11 00000000 022345
Q ss_pred eEEEeeCCCCCEEEEEecCCeEEEEEccCC-c----------eeEEEec-cCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q psy14906 165 VNVLEPSPVVDIIGVGLSNKKIILHNILTD-E----------SLMEFIQ-TWGPVTALSFRTDGPPMMVSGSNTGHLTVW 232 (583)
Q Consensus 165 i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-~----------~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 232 (583)
|..++........++-..+|.|..|-.... + ....+.. ....|..++...+ ..+.-..+|.|..|
T Consensus 213 v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~---hs~alt~~G~v~~w 289 (389)
T 3kci_A 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ---FSVALTKSGAVYTW 289 (389)
T ss_dssp EEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT---EEEEEETTSCEEEE
T ss_pred EEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC---EEEEEeCCCeEEEE
Confidence 666665543345555678899988864321 1 1111111 1124666665544 34445678899999
Q ss_pred eCCCCee-----------hhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy14906 233 NLEDRQV-----------ENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWI 276 (583)
Q Consensus 233 d~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 276 (583)
=....-. ...+..-....|..++. .....+....||.|..|=
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG 342 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWG 342 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEE
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEee
Confidence 6542110 01110011234555544 333444556788888883
No 375
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=59.37 E-value=1.1e+02 Score=28.09 Aligned_cols=176 Identities=10% Similarity=0.068 Sum_probs=95.7
Q ss_pred eEEEeecCcc--cccceeeecccccccCCCCceEEEEc---cC----CcEEEEEe-cCceEEEEEcccCccccccC---C
Q psy14906 386 KVSLWSFYKS--KMDDMFLVPERCKQAKQSKPTCVYIT---HC----GNFVLIGY-SSGHVDRFNIQSGAHRGSYG---H 452 (583)
Q Consensus 386 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s---~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~ 452 (583)
++..||+.+. +.......+...... ...+..+.+. |+ +.+++++. ..+.|.+||+.+++..+.+. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~-~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEK-PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCC-GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhccc-CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 5666777666 444333333222221 2567777777 22 34555544 46779999999877554431 1
Q ss_pred CCC------CCc----ccCeeEEEEeCC----CcEEEEeecCCcEEEEEccC-----CC-CCceEEeeccC---CeeeEE
Q psy14906 453 DNQ------PGH----VGGVRGVVSDNL----NQIVISGGNDQTVKVWHFKQ-----TG-KPPLRSIKLDN---GISFFR 509 (583)
Q Consensus 453 ~~~------~~h----~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~-----~~-~~~~~~~~~~~---~v~~~~ 509 (583)
+.. .+. ...+..|+++|+ ++.|+.....+ -++|.+.+ .. ...++.+...+ .-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 100 011 247889999998 67777665544 23444332 10 02222232222 233456
Q ss_pred ec-cCCcEEEEEeCCceEEEEEccc-c---ceEEeec-c-cccceeeEEecCCCcEEEEEe
Q psy14906 510 TH-QESSMLAVCLDDFTVNIIDIDT-C---TIIRKLS-G-HMGQLTDADFSPDSRWLITAS 563 (583)
Q Consensus 510 ~s-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~-~-h~~~v~~l~~s~d~~~l~s~~ 563 (583)
+. .+|.++++--+.+.|..|+..+ . +....+. . .-..+..+.+.++|.+.+.++
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 64 6787778778889999999875 1 1122222 1 112366777777776655543
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.50 E-value=98 Score=27.33 Aligned_cols=149 Identities=9% Similarity=0.004 Sum_probs=82.8
Q ss_pred CCcEEEEEecCceEEEEEcccCccccc--cCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCCCCce----
Q psy14906 423 CGNFVLIGYSSGHVDRFNIQSGAHRGS--YGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPL---- 496 (583)
Q Consensus 423 ~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---- 496 (583)
++.+++..+.+|.++...+..-..... .....+..+ ..+..+....+...++..+.+|.+..++...- +..
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v--~~~gr~a 184 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSV--RAMGCNT 184 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGS--CBCCTTC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHc--CccCCCC
Confidence 456788889999999988753222111 000111233 55656555555556777888898888877542 111
Q ss_pred ---E--EeeccCCeeeEEeccCCcEEEEEeCCceEEEEEccccce---------EEeecccccceeeEEecCCCcEEEEE
Q psy14906 497 ---R--SIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTI---------IRKLSGHMGQLTDADFSPDSRWLITA 562 (583)
Q Consensus 497 ---~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~h~~~v~~l~~s~d~~~l~s~ 562 (583)
. .+.....|.++...+++..+++.+..|.++-.++..... ...+..-.+.+..+....+...|+..
T Consensus 185 ~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~ 264 (307)
T 1zi0_A 185 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI 264 (307)
T ss_dssp CCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEE
T ss_pred CCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEE
Confidence 1 122334566665555666788889999988887743221 11122222344444333333444455
Q ss_pred eCCCeEEEEeCC
Q psy14906 563 SMDCTIRVWDIP 574 (583)
Q Consensus 563 ~~d~~i~vw~~~ 574 (583)
+.+|.+.-.++.
T Consensus 265 t~~g~~ir~~~~ 276 (307)
T 1zi0_A 265 TDAGTLVRTRVS 276 (307)
T ss_dssp ESSCCEEEEEGG
T ss_pred cCCCcEEEEecc
Confidence 566665555543
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=56.79 E-value=1e+02 Score=27.14 Aligned_cols=151 Identities=8% Similarity=0.047 Sum_probs=81.0
Q ss_pred CCCCEEEEEecCCeEEEEEccCCceeE---------EEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC---C----
Q psy14906 172 PVVDIIGVGLSNKKIILHNILTDESLM---------EFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL---E---- 235 (583)
Q Consensus 172 ~~~~~l~~~~~d~~i~iw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~---~---- 235 (583)
|+...+++.+.+|.|+--.+.+-+... .+... +.+..+....... .++..+..|.+.-+.. .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~-~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD-HILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC-EEEEEECCCEEEEEEhhHCcCCCC
Confidence 355678888899998877664322111 12223 4444444444444 5666666787655543 2
Q ss_pred --CCeehhhhhh-ccccceEEEEEe---cCCCEEEEEeCCCeEEEEEccCCC---CCceeeEEeccCCCCCeeEEEeeCC
Q psy14906 236 --DRQVENQIKK-AHRKVVTGAHFL---YNEPLLVTSSPDNTLKLWIFDKAD---GNGRLLRIREGHSAPPNYIQFYGNS 306 (583)
Q Consensus 236 --~~~~~~~~~~-~~~~~v~~~~~~---~~~~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~ 306 (583)
.|..+..+.. .....|.++... .++.+++..+..|.++--.+..-. ..+.....+..+ +.+..+.... +
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~-~ 156 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS-G 156 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC-T
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC-C
Confidence 2333332211 234456666443 346678889999999988764211 112222223333 4555555543 4
Q ss_pred CCEEEEeeCCCcEEEEEccc
Q psy14906 307 SDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 307 ~~~l~~~~~dg~i~iwd~~~ 326 (583)
.+.++..+.+|.+..++...
T Consensus 157 ~~~i~l~T~~G~~irf~~~~ 176 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESS 176 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEECCCCcEEEEEHHH
Confidence 56777888888888887653
No 378
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=54.73 E-value=1.1e+02 Score=26.97 Aligned_cols=111 Identities=11% Similarity=0.044 Sum_probs=67.0
Q ss_pred CCcEEEEEecCceEEEEEcccCccccc--cCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCCC---C--Cc
Q psy14906 423 CGNFVLIGYSSGHVDRFNIQSGAHRGS--YGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTG---K--PP 495 (583)
Q Consensus 423 ~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~--~~ 495 (583)
++.+++..+.+|.++...+..-..... .....+.. ...+..+....+...++..+.+|.+..+....-. . .=
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G 191 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG 191 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC
Confidence 356788889999998887753221100 00001123 4566666665556678888889999988876520 0 11
Q ss_pred eEEe--eccCCeeeEEeccCCcEEEEEeCCceEEEEEcccc
Q psy14906 496 LRSI--KLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTC 534 (583)
Q Consensus 496 ~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 534 (583)
+..+ .....+..+....++..+++.+..|..+..++..-
T Consensus 192 v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 192 VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 1222 22345666655556677888899999999988543
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.57 E-value=63 Score=31.49 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=40.9
Q ss_pred cCeeEEEEeCCCcEEEEeec------------CCcEEEEEccCCCCCceEEeecc--CCeeeEEeccCCcEEEEEe
Q psy14906 460 GGVRGVVSDNLNQIVISGGN------------DQTVKVWHFKQTGKPPLRSIKLD--NGISFFRTHQESSMLAVCL 521 (583)
Q Consensus 460 ~~v~~~~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~ 521 (583)
.....|.|+++|.+.+.... ...+..++..++ ++...+... ..++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG--el~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG--EIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC--CEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC--eEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987773321 124555666555 555555433 5789999999999888764
No 380
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.38 E-value=30 Score=33.96 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=40.2
Q ss_pred CeEEEEEecCCCCEEEEEcCC------------CcEEEEeCCCCeehhhhhhccccceEEEEEecCCCEEEEE
Q psy14906 206 PVTALSFRTDGPPMMVSGSNT------------GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTS 266 (583)
Q Consensus 206 ~v~~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 266 (583)
..-.|+|+|.|. +++.-..+ ..+.+.+..+++..+-+......+++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346789999998 65554322 2355666666665554422345689999999999877664
No 381
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=50.19 E-value=1.9e+02 Score=28.12 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred cCCceEEEeecCcccccceeeecccccccCCCCceEEEEccCC-cEEEEEecCce-------------------------
Q psy14906 382 TGKNKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCG-NFVLIGYSSGH------------------------- 435 (583)
Q Consensus 382 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~------------------------- 435 (583)
.+...+..|++....+-............+...+....+.-|| .-+++.+.+|.
T Consensus 148 tg~~~l~aY~ldG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~G 227 (591)
T 2zux_A 148 TGDVLIDAYKLDGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSG 227 (591)
T ss_dssp CCCCEEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSS
T ss_pred CCCcEEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecC
Q ss_pred ---EEEEEcccCccccccCCCCCCCccc-------------CeeEEEEeCCCcEEEEee---cCCcEEEEEccCCCCCce
Q psy14906 436 ---VDRFNIQSGAHRGSYGHDNQPGHVG-------------GVRGVVSDNLNQIVISGG---NDQTVKVWHFKQTGKPPL 496 (583)
Q Consensus 436 ---i~i~d~~~~~~~~~~~~~~~~~h~~-------------~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~ 496 (583)
|.++|-.+|+.+.........+... .+.-..+.-+...++.+- ....|..||...+..+..
T Consensus 228 pEyL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~ 307 (591)
T 2zux_A 228 PEYLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKL 307 (591)
T ss_dssp CCEEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEE
T ss_pred CcEEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEE
Q ss_pred EEeeccC------------CeeeEEeccCCc-EEEEEeCCceEEEEEccccceEEeecccccceeeEEecCC--CcEEEE
Q psy14906 497 RSIKLDN------------GISFFRTHQESS-MLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPD--SRWLIT 561 (583)
Q Consensus 497 ~~~~~~~------------~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~s 561 (583)
..+.... .+....+.-||+ -++.|+. ++|-+...+-..-.+|...+.--.|.|+ |..++.
T Consensus 308 W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~ 382 (591)
T 2zux_A 308 WTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQ 382 (591)
T ss_dssp EEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEE
T ss_pred EEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEE
Q ss_pred EeCC----CeEEEEeCCCcccc
Q psy14906 562 ASMD----CTIRVWDIPSSQLI 579 (583)
Q Consensus 562 ~~~d----~~i~vw~~~~~~~~ 579 (583)
+.++ .-..+.|..+|+.+
T Consensus 383 ~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 383 VHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp ECCCTTSSCSEEEEETTTCCEE
T ss_pred EecCCCCCCccEEEECCCCcEE
No 382
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=46.31 E-value=1.8e+02 Score=26.91 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=62.1
Q ss_pred EEEEEeCCCceEEEEeeCCeEEEEecCC-cEEE-----------eecCCCCCCeEEEEe-eCeEEEEEcCCeEEEEec--
Q psy14906 35 VARFIRRRKETLFVTCVGKAFHVYGCNH-FKLL-----------SVSPQHEDDITCLSS-DFFHIYTSANNIIYAWRR-- 99 (583)
Q Consensus 35 ~~~~~p~~~~~~i~~~~~~~i~v~d~~~-~~~~-----------~~~~~h~~~v~~~~~-~~~~~~~~~~~~i~vw~~-- 99 (583)
+++.. -+....++...++.|+.|-... +++- -..-.....|..++. ....++...+|.|+.|-.
T Consensus 77 v~~va-~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~ 155 (423)
T 3mvd_K 77 AVDIS-AGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFR 155 (423)
T ss_dssp EEEEE-ECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred ceEEe-eCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCC
Confidence 34444 3445566667899999997543 1110 000012346777777 346667788999999974
Q ss_pred c--cee---------eeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy14906 100 G--IDI---------VGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKA 140 (583)
Q Consensus 100 ~--~~~---------~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~ 140 (583)
+ +++ ..........|..|+.-..+.+....+|.|+.|-...
T Consensus 156 n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~ 207 (423)
T 3mvd_K 156 DSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207 (423)
T ss_dssp CSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred CCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCc
Confidence 2 111 1111122345777766666777778899999997543
No 383
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=46.12 E-value=80 Score=22.68 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=16.3
Q ss_pred eEEEEeCCCcEEEEeecCCcEEEEEccC
Q psy14906 463 RGVVSDNLNQIVISGGNDQTVKVWHFKQ 490 (583)
Q Consensus 463 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 490 (583)
..+.+..+|++++... ++.+ +|.-.+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 4567777888776543 3443 787554
No 384
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.71 E-value=2.1e+02 Score=26.03 Aligned_cols=153 Identities=8% Similarity=0.008 Sum_probs=88.8
Q ss_pred eCCCCCEEEEEecCCeEEEEEccC---------CceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEe---CC--
Q psy14906 170 PSPVVDIIGVGLSNKKIILHNILT---------DESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWN---LE-- 235 (583)
Q Consensus 170 ~s~~~~~l~~~~~d~~i~iw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd---~~-- 235 (583)
+-|+...+++.+.+|.|+--.+.+ +..-..++.. +.+..+....... .++..+..|.+.-+. +.
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d-~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHD-TLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTC-EEEEEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCC-EEEEEeCCCeEEEEEHHHCcCC
Confidence 447788999999999999876542 1122223333 5565555555544 566666677766554 32
Q ss_pred ----CCeehhhh-hhccccceEEEEEec---CCCEEEEEeCCCeEEEEEccCCC---CCceeeEEeccCCCCCeeEEEee
Q psy14906 236 ----DRQVENQI-KKAHRKVVTGAHFLY---NEPLLVTSSPDNTLKLWIFDKAD---GNGRLLRIREGHSAPPNYIQFYG 304 (583)
Q Consensus 236 ----~~~~~~~~-~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~ 304 (583)
.|..+..+ .......|.++.... ++.+|+.++..|.++...++.-. ..+.....+.. .+.+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 23333322 112345666655432 45689999999999988764321 12222222332 34455555543
Q ss_pred CCCCEEEEeeCCCcEEEEEccc
Q psy14906 305 NSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 305 ~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
+.+.++..+.+|.+..+....
T Consensus 160 -~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 160 -GDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp -SCCEEEEEETTSEEEEEEGGG
T ss_pred -CCceEEEEeCCCeEEEEEccc
Confidence 456788888889888887643
No 385
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=38.15 E-value=2.4e+02 Score=25.95 Aligned_cols=267 Identities=9% Similarity=0.057 Sum_probs=133.5
Q ss_pred CCceEEEEeeCCeEEEEecCC-c----------EEEeecC-CCCCCeEEEEeeC-eEEEEEcC-CeEEEEecc--ce---
Q psy14906 42 RKETLFVTCVGKAFHVYGCNH-F----------KLLSVSP-QHEDDITCLSSDF-FHIYTSAN-NIIYAWRRG--ID--- 102 (583)
Q Consensus 42 ~~~~~i~~~~~~~i~v~d~~~-~----------~~~~~~~-~h~~~v~~~~~~~-~~~~~~~~-~~i~vw~~~--~~--- 102 (583)
+....++...++.|+.|-... + .....+. .....|..++... ..++...+ +.|+.|-.+ ++
T Consensus 24 G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~ 103 (406)
T 4d9s_A 24 GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGH 103 (406)
T ss_dssp CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCS
T ss_pred CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCC
Confidence 444556666788899886533 1 1111121 1234688888744 44445555 599999531 11
Q ss_pred -------eeeeec-ccCccEEEEccCCCEEEEEeCCCcEEEEEcCC-CcE--------EEEeeccCCceEEecccCCcce
Q psy14906 103 -------IVGTYK-GHTSPVHLILPFGPHLISVDEESNVKVWDIKA-EET--------YLELSFDNDTFKIMGKRWNSCV 165 (583)
Q Consensus 103 -------~~~~~~-~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~i 165 (583)
....+. -....|..|+.-..+.+....+|.|..|-... +++ ....... ......|
T Consensus 104 g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~--------~~~~~~i 175 (406)
T 4d9s_A 104 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ--------AFEGIRI 175 (406)
T ss_dssp SSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG--------GGTTCCE
T ss_pred CCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec--------ccCCCcE
Confidence 111111 12336777876667777778899999997543 210 0000000 0112345
Q ss_pred EEEeeCCCCCEEEEEecCCeEEEEEccCC-c---------ee-EEEe-ccCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q psy14906 166 NVLEPSPVVDIIGVGLSNKKIILHNILTD-E---------SL-MEFI-QTWGPVTALSFRTDGPPMMVSGSNTGHLTVWN 233 (583)
Q Consensus 166 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-~---------~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 233 (583)
..++.. ....++-..+|.|..|-.... + .. ..+. .....|..++.... ..+.-..+|.|..|-
T Consensus 176 ~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 176 KMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR---HTISVSYSGALYTYG 250 (406)
T ss_dssp EEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS---EEEEEETTCCEEEEE
T ss_pred EEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC---cEEEEcCCCCEEEee
Confidence 555543 334555567888888864321 0 01 1111 11134555554433 445556788888886
Q ss_pred CCCCeeh-----------hhhhhccccceEEEEEecCCCEEEEEeCCCeEEEEEccCCCC------Cc--eeeEEeccCC
Q psy14906 234 LEDRQVE-----------NQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADG------NG--RLLRIREGHS 294 (583)
Q Consensus 234 ~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~------~~--~~~~~~~~~~ 294 (583)
....-.+ ..+.......|..++. .....+.-..||.+..|=.+.... .. .+........
T Consensus 251 ~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 328 (406)
T 4d9s_A 251 WSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 328 (406)
T ss_dssp CCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGG
T ss_pred CCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCC
Confidence 5432111 1110111234555544 334455556788888884321100 00 1111111122
Q ss_pred CCCeeEEEeeCCCCEEEEeeCCCcEEEEEccc
Q psy14906 295 APPNYIQFYGNSSDNILSAAGDSTLRIFNTKS 326 (583)
Q Consensus 295 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 326 (583)
..|..++. ...+.+....+|.++.|=...
T Consensus 329 ~~v~~va~---G~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 329 QKVVQVSC---GWRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp CCEEEEEE---CSSEEEEEETTSCEEEEECCT
T ss_pred CcEEEEEe---CCCeEEEEeCCCCEEEecCCC
Confidence 34555554 345666667889999997543
No 386
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=35.83 E-value=3.2e+02 Score=26.66 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=68.0
Q ss_pred eCeEEEEEcCCeEEEEeccceeeeeecccCcc---E--EEEccCCCEEEEEeC--------------CCcEEEEEcCCCc
Q psy14906 82 DFFHIYTSANNIIYAWRRGIDIVGTYKGHTSP---V--HLILPFGPHLISVDE--------------ESNVKVWDIKAEE 142 (583)
Q Consensus 82 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~h~~~---v--~~is~~~~~l~s~~~--------------dg~i~iwd~~~~~ 142 (583)
+|.+..+. ...+...|..++.+..+....+. - ..+.++|+.|+.+.. +..|..-| .+|+
T Consensus 217 nG~l~~g~-G~~i~elD~~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGe 294 (571)
T 3elq_A 217 RGTFTAVQ-GQHWYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGR 294 (571)
T ss_dssp TSCEEEEE-BTEEEEECTTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSC
T ss_pred CCCEEEec-CcEEEEECCCCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCC
Confidence 55665553 34688888877776655422111 0 113788998886532 33566777 7888
Q ss_pred EEEEeecc----CCceE---------------E--ec-------------------ccCCcceEEEeeCCC-CCEEEEEe
Q psy14906 143 TYLELSFD----NDTFK---------------I--MG-------------------KRWNSCVNVLEPSPV-VDIIGVGL 181 (583)
Q Consensus 143 ~~~~~~~~----~~~~~---------------~--~~-------------------~~~~~~i~~~~~s~~-~~~l~~~~ 181 (583)
.+.+.... +.... . .| ...--.|+++.+.+. +++|+++-
T Consensus 295 Vv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~liSsR 374 (571)
T 3elq_A 295 VVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIILSSR 374 (571)
T ss_dssp EEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEEEET
T ss_pred EEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEEECC
Confidence 88776431 11000 0 00 011134888888874 45666665
Q ss_pred cCCeEEEEEccCCceeEEEeccC
Q psy14906 182 SNKKIILHNILTDESLMEFIQTW 204 (583)
Q Consensus 182 ~d~~i~iw~~~~~~~~~~~~~~~ 204 (583)
.- .|...|. +++.+..+.++.
T Consensus 375 ~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 375 HQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp TT-EEEEEET-TSCEEEEESCST
T ss_pred cc-EEEEEcC-CCcEEEEECCCC
Confidence 55 6666674 788888777663
No 387
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=31.92 E-value=3.1e+02 Score=25.28 Aligned_cols=214 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCceEEEEeeCCeEEEEecCCcEEEeecCCC------------CCCeEEEEe-eCeEEEEEcCCeEEEEec---------
Q psy14906 42 RKETLFVTCVGKAFHVYGCNHFKLLSVSPQH------------EDDITCLSS-DFFHIYTSANNIIYAWRR--------- 99 (583)
Q Consensus 42 ~~~~~i~~~~~~~i~v~d~~~~~~~~~~~~h------------~~~v~~~~~-~~~~~~~~~~~~i~vw~~--------- 99 (583)
+....++...++.|+.|-....-++..-... ...|..++. ....++...+|.|+.|-.
T Consensus 67 G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG 146 (413)
T 1a12_A 67 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIG 146 (413)
T ss_dssp CSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEE
T ss_pred CCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccC
Q ss_pred -----cceeeeeecccCccEEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEeccc--------------
Q psy14906 100 -----GIDIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKR-------------- 160 (583)
Q Consensus 100 -----~~~~~~~~~~h~~~v~~is~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------------- 160 (583)
........-.....|..|+.-..+.+....||.|..|-.....++-.-. .
T Consensus 147 ~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~-----------~~~~~~~~~~~~~~~ 215 (413)
T 1a12_A 147 LLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVP-----------ELFANRGGRQGLERL 215 (413)
T ss_dssp SSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCG-----------GGTSSSCGGGGHHHH
T ss_pred cCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCc-----------ccccccccccccccc
Q ss_pred --------------CCcceEEEeeCCCCCEEEEEecCCeEEEEEccC--------------CceeEEEeccCCCeEEEEE
Q psy14906 161 --------------WNSCVNVLEPSPVVDIIGVGLSNKKIILHNILT--------------DESLMEFIQTWGPVTALSF 212 (583)
Q Consensus 161 --------------~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~--------------~~~~~~~~~~~~~v~~~~~ 212 (583)
....|..++.. ...-++-..+|.|+.|=... ...+..+......|..++.
T Consensus 216 ~~P~~v~~~~~g~~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~ 293 (413)
T 1a12_A 216 LVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 293 (413)
T ss_dssp HSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE
T ss_pred ccCceEeeccccccCCccEEEEEeC--CCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEec
Q ss_pred ecCCCCEEEEEcCCCcEEEE------------eCCCCeehhhhhhccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy14906 213 RTDGPPMMVSGSNTGHLTVW------------NLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275 (583)
Q Consensus 213 ~~~~~~~l~s~~~dg~i~vw------------d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~w 275 (583)
..+ ..+.-..+|.|..| +.........+ ..-. .|..++. .....+....||.|..|
T Consensus 294 G~~---hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v-~~l~-~v~~v~~--G~~hs~alt~~G~v~~w 361 (413)
T 1a12_A 294 GQH---HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI-SRLP-AVSSVAC--GASVGYAVTKDGRVFAW 361 (413)
T ss_dssp CSS---EEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEEC-CSSS-SEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred ccc---eEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEe-cccC-ceeEEEE--CcceEEEEeCCCCEEEe
No 388
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=29.96 E-value=1.9e+02 Score=28.09 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=43.1
Q ss_pred CeeeEEeccCC--cEEEEEeCCceEEEEEccccc----eEEee--ccccccee-eEEecCCCcEEEEEeCCCeEEE
Q psy14906 504 GISFFRTHQES--SMLAVCLDDFTVNIIDIDTCT----IIRKL--SGHMGQLT-DADFSPDSRWLITASMDCTIRV 570 (583)
Q Consensus 504 ~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~----~~~~~--~~h~~~v~-~l~~s~d~~~l~s~~~d~~i~v 570 (583)
..++++....+ ..++.|+.+|.|.-..+.... .+..+ .....+|. .|.+++++.+|..++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 35555555433 367788999988766554321 22222 22346785 9999999999999987765554
No 389
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.90 E-value=2.6e+02 Score=23.77 Aligned_cols=144 Identities=9% Similarity=0.034 Sum_probs=79.6
Q ss_pred EEEEEecCceEEEEEcccCccccccCCCCCCCcccCeeEEEEeCCCcEEEEeecCCcEEEEEccCC---CC--Cce---E
Q psy14906 426 FVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQT---GK--PPL---R 497 (583)
Q Consensus 426 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~--~~~---~ 497 (583)
.+++.+.+|.|+--....... ..+. +... ..+..+........|+..+..|.++-.....- .. .++ -
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~-~~~~---lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i 78 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDA-PGLN---YKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKL 78 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCS-TTSC---CCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTC
T ss_pred EEEEEeCCCEEEEeeCCcCCc-eecc---CCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeee
Confidence 455567778777655432211 1110 1233 34444444444455666677888666554321 00 100 1
Q ss_pred EeeccCCeeeEEeccCCcEEEEEeCCceEEEEEcccc-------ceEEeecccccceeeEEec-CCCcEEEEEeCCCeEE
Q psy14906 498 SIKLDNGISFFRTHQESSMLAVCLDDFTVNIIDIDTC-------TIIRKLSGHMGQLTDADFS-PDSRWLITASMDCTIR 569 (583)
Q Consensus 498 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~h~~~v~~l~~s-~d~~~l~s~~~d~~i~ 569 (583)
.+.....|.++....++.+|+.++..|.++...+... .....++. .+.+..+... .++..|+..+.+|.+.
T Consensus 79 ~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~l 157 (256)
T 1zvt_A 79 TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRML 157 (256)
T ss_dssp CCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEE
T ss_pred cCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEE
Confidence 1233445666644445677888999999999987542 22333432 2455555555 3455777888899888
Q ss_pred EEeCCC
Q psy14906 570 VWDIPS 575 (583)
Q Consensus 570 vw~~~~ 575 (583)
.+++..
T Consensus 158 rf~~~e 163 (256)
T 1zvt_A 158 MFPVSD 163 (256)
T ss_dssp EEEGGG
T ss_pred EEEHHH
Confidence 887753
No 390
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=27.25 E-value=3.3e+02 Score=24.19 Aligned_cols=148 Identities=10% Similarity=0.046 Sum_probs=80.7
Q ss_pred CCEEEEEecCCeEEEEEccCCc-------eeEE--EeccCCCeEEEEEecCCCCEEEEEcCCCcEEEE---eCC------
Q psy14906 174 VDIIGVGLSNKKIILHNILTDE-------SLME--FIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVW---NLE------ 235 (583)
Q Consensus 174 ~~~l~~~~~d~~i~iw~~~~~~-------~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vw---d~~------ 235 (583)
...+++.+.+|.|+--.+.+-+ -+.. +... +.+..+.-..... .|+.-+..|.+.-. ++.
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~-D~~~~~~~~~t~d-~ll~fT~~Gr~y~~~~~~lp~~~r~~ 80 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQD-DIVAHFFVCSTHD-LILFFTTQGRVYRAKAYDLPEASRTA 80 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGG-GCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCSSS
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCC-CEEEEEEEeCCCC-EEEEEeCCCeEEEEEHHHCcCCCccC
Confidence 3466777888888866543211 1111 2222 3454444444444 45555556765544 443
Q ss_pred CCeehhhhhh-ccccceEEEEEec---CCCEEEEEeCCCeEEEEEccCCCC---CceeeEEeccCCCCCeeEEEeeCCCC
Q psy14906 236 DRQVENQIKK-AHRKVVTGAHFLY---NEPLLVTSSPDNTLKLWIFDKADG---NGRLLRIREGHSAPPNYIQFYGNSSD 308 (583)
Q Consensus 236 ~~~~~~~~~~-~~~~~v~~~~~~~---~~~~l~s~~~d~~i~~w~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~ 308 (583)
.|..+..+.. .....|.++...+ +..+++..+.+|.++--.++.-.. .+.....+.. .+.+..+.... +.+
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d 158 (327)
T 3uc1_A 81 RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGD 158 (327)
T ss_dssp CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTC
T ss_pred CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCC
Confidence 2444433311 2345666665444 477999999999999887643211 1122222332 34455554443 556
Q ss_pred EEEEeeCCCcEEEEEcc
Q psy14906 309 NILSAAGDSTLRIFNTK 325 (583)
Q Consensus 309 ~l~~~~~dg~i~iwd~~ 325 (583)
.++..+..|.+..+...
T Consensus 159 ~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 159 DLLLVSANGQSIRFSAT 175 (327)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred EEEEEECCCeEEEEECc
Confidence 78888888998888765
No 391
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.47 E-value=92 Score=30.22 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=44.0
Q ss_pred CceEEEEccCC--cEEEEEecCceEEEEEcccCc----cccccCCCCCCCcccCee-EEEEeCCCcEEEEeecCCcEEE
Q psy14906 414 KPTCVYITHCG--NFVLIGYSSGHVDRFNIQSGA----HRGSYGHDNQPGHVGGVR-GVVSDNLNQIVISGGNDQTVKV 485 (583)
Q Consensus 414 ~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~dg~i~i 485 (583)
..++++....+ ..++.|+.+|.|.-..+.... ....+.. .....+|. .+.+++++.+|+.++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v---~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV---FKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEEC---CTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEe---ecCCCccccceEEccCCCeEEEEecccccee
Confidence 46666665543 567889999988766554332 1222211 22345775 8999999999998887665544
No 392
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.38 E-value=2.1e+02 Score=27.38 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=42.0
Q ss_pred CeeeEEecc----CCc--EEEEEeCCceEEEEEcc-cc-------ceEEeec--ccccceeeEEecCCCcEEEEEeCCCe
Q psy14906 504 GISFFRTHQ----ESS--MLAVCLDDFTVNIIDID-TC-------TIIRKLS--GHMGQLTDADFSPDSRWLITASMDCT 567 (583)
Q Consensus 504 ~v~~~~~s~----~~~--~l~~~~~dg~i~i~d~~-~~-------~~~~~~~--~h~~~v~~l~~s~d~~~l~s~~~d~~ 567 (583)
..++++... ++. .+..|+.+|.|.-.-+. .+ ..+.++. ....+|..|.++++..+|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 345555442 243 56778889877554432 11 1222232 23578999999999999999998876
Q ss_pred EEE
Q psy14906 568 IRV 570 (583)
Q Consensus 568 i~v 570 (583)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 393
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.28 E-value=1.7e+02 Score=27.99 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=42.7
Q ss_pred CceEEEEcc----CC--cEEEEEecCceEEEEEcccCc--------cccccCCCCCCCcccCeeEEEEeCCCcEEEEeec
Q psy14906 414 KPTCVYITH----CG--NFVLIGYSSGHVDRFNIQSGA--------HRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGN 479 (583)
Q Consensus 414 ~i~~~~~s~----~~--~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 479 (583)
..++++... ++ ..++.|+.+|.|.-.-+.... .+..+.. .....+|..+.++++..+|+.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v---~~~~~pI~~m~l~~~~~~Lyv~s~ 481 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV---FREPTTISAMELSTKQQQLYIGST 481 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECC---SSSCCCCCEEEEETTTTEEEEEBS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEee---cCCCCccceEEEcCCCCEEEEEEC
Confidence 345655543 23 457789999987654433221 1112211 124578999999999999999988
Q ss_pred CCcEEE
Q psy14906 480 DQTVKV 485 (583)
Q Consensus 480 dg~i~i 485 (583)
++.++|
T Consensus 482 ~~V~~v 487 (495)
T 1q47_A 482 AGVAQL 487 (495)
T ss_dssp SCEEEE
T ss_pred CeEEEE
Confidence 776654
No 394
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.51 E-value=4.3e+02 Score=23.42 Aligned_cols=151 Identities=7% Similarity=-0.017 Sum_probs=85.0
Q ss_pred CCCCEEEEEecCCeEEEEEccCC----ceeEEEeccCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC---C------CCe
Q psy14906 172 PVVDIIGVGLSNKKIILHNILTD----ESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNL---E------DRQ 238 (583)
Q Consensus 172 ~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~---~------~~~ 238 (583)
|+...+++.+.+|.|+--.+..- ..-..+... +.+..+....... .++..+..|.+.-+.. . .|.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d-~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKD-VLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCC-EEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56677888899999987765421 111123333 4454444444444 5666666787655543 2 234
Q ss_pred ehhhhh-hccccceEEEEEecC---CCEEEEEeCCCeEEEEEccCCCC----CceeeEEeccCCCCCeeEEEeeCCCCEE
Q psy14906 239 VENQIK-KAHRKVVTGAHFLYN---EPLLVTSSPDNTLKLWIFDKADG----NGRLLRIREGHSAPPNYIQFYGNSSDNI 310 (583)
Q Consensus 239 ~~~~~~-~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~~w~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l 310 (583)
++..+. -.....|.++...++ +.+++.++..|.++--.++.-.. .+.....+... +.+..+.... +.+.+
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~-~~~~i 158 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTD-GMNEL 158 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEEC-SCSEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeC-CCCEE
Confidence 333321 122345666544333 56788999999999987642211 12221122222 4555555443 45678
Q ss_pred EEeeCCCcEEEEEccc
Q psy14906 311 LSAAGDSTLRIFNTKS 326 (583)
Q Consensus 311 ~~~~~dg~i~iwd~~~ 326 (583)
+..+.+|.+..+....
T Consensus 159 ~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 159 FLVTHNGYALWFDESE 174 (323)
T ss_dssp EEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHH
Confidence 8888889888888754
No 395
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.35 E-value=2.3e+02 Score=20.21 Aligned_cols=62 Identities=5% Similarity=-0.150 Sum_probs=31.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEeeccCCceEEecccCCcceEEEeeCCCCCEEEEEecCCeEEEEEccC
Q psy14906 120 FGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKKIILHNILT 193 (583)
Q Consensus 120 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~ 193 (583)
++.+.+.-..||.+.+++...+..+..-.. .....-..+.+..+|++++... ++.+ +|...+
T Consensus 23 ~g~~~L~~q~dGNLvL~~~~~~~~vWssnt----------~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTKGSKTNIVWESGT----------SGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp ETTEEEEECTTSCEEEEETTTTEEEEECCC----------TTSCSSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred cCCEEEEEcCCCEEEEEECCCCEEEEECCc----------ccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 355555666677777776533444443321 1111223466777777776532 3433 676543
No 396
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.43 E-value=3.3e+02 Score=26.69 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=37.4
Q ss_pred EEEEEeCCceEEEEEccc-c----c-eEEeec--ccccceeeEEecCCCcEEEEEeCCCeEEEE
Q psy14906 516 MLAVCLDDFTVNIIDIDT-C----T-IIRKLS--GHMGQLTDADFSPDSRWLITASMDCTIRVW 571 (583)
Q Consensus 516 ~l~~~~~dg~i~i~d~~~-~----~-~~~~~~--~h~~~v~~l~~s~d~~~l~s~~~d~~i~vw 571 (583)
.+..|+.+|.|.-.-+.. + . .+..+. ....+|..+.++++...|..++.++.++|-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 667788888876443322 2 1 122232 245689999999999999988888766653
No 397
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=20.22 E-value=6.1e+02 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCeehhhh
Q psy14906 207 VTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI 243 (583)
Q Consensus 207 v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 243 (583)
++++.+.+.+..+|+++-.- .|...|. +++.+..+
T Consensus 357 iNsv~~d~~dd~~liSsR~~-~I~~Id~-tG~V~W~L 391 (571)
T 3elq_A 357 VNSIAYDAKDDSIILSSRHQ-GVVKIGR-DKQVKWIL 391 (571)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEET-TSCEEEEE
T ss_pred ecceeEcCCCCEEEEECCcc-EEEEEcC-CCcEEEEE
Confidence 78899888544377777665 6655564 56554444
Done!