RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14906
(583 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 92.4 bits (230), Expect = 8e-21
Identities = 62/270 (22%), Positives = 110/270 (40%), Gaps = 28/270 (10%)
Query: 72 HEDDITCL--SSDFFHIYT-SANNIIYAWR-RGIDIVGTYKGHTSPVHLIL--PFGPHLI 125
H +TC+ S D + T S + I W +++ T KGHT PV + G +L
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 126 SVDEESNVKVWDIKAEETYLELSFDNDTFKIMG--KRWNSCVNVLEPSPVVDIIGVGLSN 183
S + +++WD++ E + G +S SP I+ +
Sbjct: 68 SGSSDKTIRLWDLETGEC---------VRTLTGHTSYVSSVA----FSPDGRILSSSSRD 114
Query: 184 KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI 243
K I + ++ T + L V +++F DG + S S G + +W+L + +
Sbjct: 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATL 173
Query: 244 KKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFY 303
H V F + L++SS D T+KLW G+ L GH N + F
Sbjct: 174 T-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST----GKCLGTLRGHENGVNSVAFS 228
Query: 304 GNSSDNILSAAGDSTLRIFNTKSETSNKNL 333
+ + S + D T+R+++ ++ + L
Sbjct: 229 PD-GYLLASGSEDGTIRVWDLRTGECVQTL 257
Score = 88.2 bits (219), Expect = 2e-19
Identities = 42/201 (20%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 385 NKVSLWSFYKSKMDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSG 444
+ +W + + K G ++ G S + +++++G
Sbjct: 31 GTIKVWDL------ETGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETG 83
Query: 445 AHRGSYGHDNQPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKP--PLRSIKLD 502
+ GH V V +I+ S D+T+KVW +TGK LR
Sbjct: 84 ECVRTLT-----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV-ETGKCLTTLRGHT-- 135
Query: 503 NGISFFRTHQESSMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITA 562
+ ++ + + +A D T+ + D+ T + L+GH G++ FSPD L+++
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195
Query: 563 SMDCTIRVWDIPSSQLIDCFQ 583
S D TI++WD+ + + + +
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLR 216
Score = 84.3 bits (209), Expect = 6e-18
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSM 516
GH GGV V +++ +G D T+KVW +TG+ + + +
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTY 65
Query: 517 LAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576
LA D T+ + D++T +R L+GH ++ FSPD R L ++S D TI+VWD+ +
Sbjct: 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125
Query: 577 QLIDCFQ 583
+ + +
Sbjct: 126 KCLTTLR 132
Score = 80.8 bits (200), Expect = 8e-17
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 22/165 (13%)
Query: 416 TCVYITHCGNFVLIGYSSGHVDR----FNIQSGAHRGSYGHDNQPGHVGGVRGVVSDNLN 471
V + G FV +S D +++++G + GH G V V
Sbjct: 139 NSVAFSPDGTFV----ASSSQDGTIKLWDLRTGKCVATL-----TGHTGEVNSVAFSPDG 189
Query: 472 QIVISGGNDQTVKVWHFKQTGKPPLRSIKL----DNGISFFRTHQESSMLAVCLDDFTVN 527
+ ++S +D T+K+W TGK + +NG++ + +LA +D T+
Sbjct: 190 EKLLSSSSDGTIKLWDL-STGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244
Query: 528 IIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+ D+ T ++ LSGH +T +SPD + L + S D TIR+WD
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 73.1 bits (180), Expect = 3e-14
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKL-DNGISFFRTHQES 514
GH V V V S D T+K+W + TGK + ++ ++ +
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKC-VATLTGHTGEVNSVAFSPDG 189
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIP 574
L D T+ + D+ T + L GH + FSPD L + S D TIRVWD+
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249
Query: 575 SSQLIDCFQ 583
+ + +
Sbjct: 250 TGECVQTLS 258
Score = 69.7 bits (171), Expect = 5e-13
Identities = 60/325 (18%), Positives = 121/325 (37%), Gaps = 51/325 (15%)
Query: 165 VNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGS 224
V + SP ++ G + I + ++ T E L GPV ++ DG + SGS
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT-YLASGS 70
Query: 225 NTGHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNG 284
+ + +W+LE + + H V+ F + +L +SS D T+K+W + G
Sbjct: 71 SDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE----TG 125
Query: 285 RLLRIREGHSAPPNYIQFYGNSSDN--ILSAAGDSTLRIFNTKSETSNKNLGIASANRNN 342
+ L GH+ N + F S D + S++ D T+++++ ++ L
Sbjct: 126 KCLTTLRGHTDWVNSVAF---SPDGTFVASSSQDGTIKLWDLRTGKCVATL--------- 173
Query: 343 LKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDDMFL 402
+ + +A D + + + + LW K
Sbjct: 174 --------TGHTGEV--------NSVAFSPDGEKLLS-SSSDGTIKLWDLSTGKCLGTL- 215
Query: 403 VPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSY-GHDNQPGHVGG 461
+ ++ V + G + G G + +++++G + GH N
Sbjct: 216 ------RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN------S 263
Query: 462 VRGVVSDNLNQIVISGGNDQTVKVW 486
V + + + SG D T+++W
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRIW 288
Score = 67.7 bits (166), Expect = 2e-12
Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 24/258 (9%)
Query: 72 HEDDITCLSSDFFHIY---TSANNIIYAWR-RGIDIVGTYKGHTSPVH--LILPFGPHLI 125
H + +++ Y S++ I W + V T GHTS V P G L
Sbjct: 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS 109
Query: 126 SVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSNKK 185
S + +KVWD++ + L D VN + SP + +
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDW-----------VNSVAFSPDGTFVASSSQDGT 158
Query: 186 IILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIKK 245
I L ++ T + + G V +++F DG + +S S+ G + +W+L + ++
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDGTIKLWDLSTGKCLGTLR- 216
Query: 246 AHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYGN 305
H V F + LL + S D T+++W D G ++ GH+ + + +
Sbjct: 217 GHENGVNSVAFSPDGYLLASGSEDGTIRVW--DLR--TGECVQTLSGHTNSVTSLAWSPD 272
Query: 306 SSDNILSAAGDSTLRIFN 323
+ S + D T+RI++
Sbjct: 273 GKR-LASGSADGTIRIWD 289
Score = 66.6 bits (163), Expect = 4e-12
Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 21/212 (9%)
Query: 71 QHEDDITCLS-SDFFHIYTSANN----IIYAWRRGIDIVGTYKGHTSPVH--LILPFGPH 123
H ++ ++ S I +S++ ++ G + T +GHT V+ P G
Sbjct: 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDGTF 149
Query: 124 LISVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN 183
+ S ++ +K+WD++ + T VN + SP + + S+
Sbjct: 150 VASSSQDGTIKLWDLRTGKC-------VATLTGH----TGEVNSVAFSPDGEKLLSSSSD 198
Query: 184 KKIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQI 243
I L ++ T + L V +++F DG ++ SGS G + VW+L + +
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTL 257
Query: 244 KKAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275
H VT + + L + S D T+++W
Sbjct: 258 S-GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
Score = 59.7 bits (145), Expect = 1e-09
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 245 KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPPNYIQFYG 304
K H VT F + LL T S D T+K+W + G LLR +GH+ P +
Sbjct: 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRDVAASA 61
Query: 305 NSSDNILSAAGDSTLRIFNTKSE 327
+ + S + D T+R+++ ++
Sbjct: 62 D-GTYLASGSSDKTIRLWDLETG 83
Score = 53.9 bits (130), Expect = 7e-08
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 537 IRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDCFQ 583
R L GH G +T FSPD + L T S D TI+VWD+ + +L+ +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK 48
Score = 33.1 bits (76), Expect = 0.33
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 44 ETLFVTCVGKAFHVYGCNHFKLLSVSPQHEDDITCLSSDFFHIY---TSANNIIYAWR-R 99
E L + ++ + K L HE+ + ++ S + I W R
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249
Query: 100 GIDIVGTYKGHTSPVHLIL--PFGPHLISVDEESNVKVWD 137
+ V T GHT+ V + P G L S + +++WD
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 86.7 bits (213), Expect = 5e-18
Identities = 94/423 (22%), Positives = 177/423 (41%), Gaps = 45/423 (10%)
Query: 165 VNVLEPSPVVDIIGVGLSNKKIILHNILTDESLMEFIQT--WGPVTALSFRT-DGPPMMV 221
+ + SP +++ G S+ I L ++ E L++ ++ V+ L+ + DG +++
Sbjct: 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILL 127
Query: 222 SGSNT-GHLTVWNLEDRQVENQIKKAHRKVVTGAHFLYNEPLLVTSSP-DNTLKLWIFDK 279
+ S+ G + +W+L + + H + VT F + LL + S D T+KLW
Sbjct: 128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187
Query: 280 ADGNGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASAN 339
G+ L GH+ P + + F + I S + D T+R+++ +
Sbjct: 188 ----GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST------------- 230
Query: 340 RNNLKRKNRLEKMNEKFILPPVSQFSFGLAREKDWNNIAAIHTGKNKVSLWSFYKSKMDD 399
L VS FS D + +A+ + + LW S
Sbjct: 231 ------GKLLRSTLSGHSDSVVSSFS------PDGSLLASG-SSDGTIRLWDLRSSSSLL 277
Query: 400 MFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRFNIQSGAHRGSYGHDNQPGHV 459
L S V + G + G S G V +++++G S G V
Sbjct: 278 RTL------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331
Query: 460 GGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAV 519
+ S + + +V G +D T+++W + PL++++ + + + +++
Sbjct: 332 SSLS--FSPDGSLLVSGGSDDGTIRLWDLRT--GKPLKTLEGHSNVLSVSFSPDGRVVSS 387
Query: 520 CLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLI 579
D TV + D+ T +++R L GH ++T DFSPD + L + S D TIR+WD+ +S
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
Query: 580 DCF 582
F
Sbjct: 448 VSF 450
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 49.7 bits (119), Expect = 2e-08
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 534 CTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
++R L GH G +T FSPD L + S D T+RVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 33.5 bits (77), Expect = 0.015
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 457 GHVGGVRGVVSDNLNQIVISGGNDQTVKVWH 487
GH G V V ++ SG +D TV+VW
Sbjct: 9 GHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 32.7 bits (75), Expect = 0.028
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 245 KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275
K H VT F + LL + S D T+++W
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 30.8 bits (70), Expect = 0.12
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 103 IVGTYKGHTSPVH--LILPFGPHLISVDEESNVKVWD 137
++ T KGHT PV P G L S ++ V+VWD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 26.5 bits (59), Expect = 4.1
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 284 GRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFN 323
G+LLR +GH+ P + F + + + S + D T+R+++
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
Score = 25.8 bits (57), Expect = 7.2
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWN 233
GPVT+++F DG ++ SGS+ G + VW+
Sbjct: 12 GPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 48.5 bits (116), Expect = 6e-08
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 533 TCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWD 572
+ +++ L GH G +T FSPD ++L + S D TI++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 32.7 bits (75), Expect = 0.028
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 456 PGHVGGVRGVVSDNLNQIVISGGNDQTVKVWH 487
GH G V V + + SG +D T+K+W
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 32.3 bits (74), Expect = 0.032
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 104 VGTYKGHTSPVH--LILPFGPHLISVDEESNVKVWD 137
+ T KGHT PV P G +L S ++ +K+WD
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 31.9 bits (73), Expect = 0.049
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 245 KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLW 275
K H VT F + L + S D T+KLW
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 26.9 bits (60), Expect = 3.1
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 205 GPVTALSFRTDGPPMMVSGSNTGHLTVWN 233
GPVT+++F DG + SGS+ G + +W+
Sbjct: 13 GPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
Score = 26.5 bits (59), Expect = 3.7
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 283 NGRLLRIREGHSAPPNYIQFYGNSSDNILSAAGDSTLRIFN 323
+G LL+ +GH+ P + F + + S + D T+++++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 35.4 bits (81), Expect = 0.087
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 126 SVDEESNVKVWDIKAEETYLELSFDNDTFKIMGKR-WNSCVNVLEPSPVVDIIGVGLSNK 184
S + E V+VWD+ + E+ K KR W+ + +P+ ++ G +
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEM-------KEHEKRVWSIDYSSADPT----LLASGSDDG 598
Query: 185 KIILHNILTDESLMEFIQTWGPVTALSFRTDGPPMMVSGSNTGHLTVWNLEDRQVENQIK 244
+ L +I S+ I+T + + F ++ + GS + ++L + ++
Sbjct: 599 SVKLWSINQGVSIGT-IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM 657
Query: 245 KAHRKVVTGAHFLYNEPLLVTSSPDNTLKLWIFD-KADG-NGRLLRIREGHSAPPNYIQF 302
H K V+ F+ + LV+SS DNTLKLW G N L GH+ N F
Sbjct: 658 IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT---NVKNF 713
Query: 303 YGNSSDNILSAAGDSTLRIF 322
G S + A G T +F
Sbjct: 714 VGLSVSDGYIATGSETNEVF 733
Score = 30.1 bits (67), Expect = 4.1
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 473 IVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSM-LAVCLDDFTVNIID- 530
++ SG +D +VK+W Q + +IK I + ES LA D V D
Sbjct: 590 LLASGSDDGSVKLWSINQ--GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDL 647
Query: 531 ----IDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSS 576
+ CT+I GH ++ F DS L+++S D T+++WD+ S
Sbjct: 648 RNPKLPLCTMI----GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 35.3 bits (81), Expect = 0.092
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 540 LSGHMGQLTDADFSP-DSRWLITASMDCTIRVWDIPSSQL 578
L G G + D F+P D + L TAS D TI W IP L
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL 110
Score = 30.2 bits (68), Expect = 3.0
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 523 DFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDCTIRVWDIPSSQLIDC 581
D VN+ D++ + + H Q+T +++ D L T S D + + D P I
Sbjct: 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIID-PRDGTIVS 204
Score = 30.2 bits (68), Expect = 3.4
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 471 NQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQESSMLAVCLDDFTVNIID 530
++ S G D V VW + GK + I+ + + S+L D +NIID
Sbjct: 138 MNVLASAGADMVVNVWDV-ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIID 196
Query: 531 IDTCTIIRKLSGHMG 545
TI+ + H
Sbjct: 197 PRDGTIVSSVEAHAS 211
>gnl|CDD|227282 COG4946, COG4946, Uncharacterized protein related to the
periplasmic component of the Tol biopolymer transport
system [Function unknown].
Length = 668
Score = 34.8 bits (80), Expect = 0.13
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 455 QPGHVGGVRGVVSDNLNQIVISGGNDQTVKVWHFKQTGKPPLRSIKLDNGISFFRTHQES 514
Q G GGVR + + G ND + K G+ L N I + +
Sbjct: 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGN-IEAVKVSPDG 413
Query: 515 SMLAVCLDDFTVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITASMDC----TIRV 570
+ V D F + +IDID + G +TD D+ P+SRW+ A + +I++
Sbjct: 414 KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473
Query: 571 WDIPSSQLID 580
+D+ ++ D
Sbjct: 474 YDMDGGKIYD 483
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 34.5 bits (79), Expect = 0.16
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 539 KLSGHMGQLTDADFSP-DSRWLITASMDCTIRVWDIP 574
KL GH + D F+P S L + S D TIRVW+IP
Sbjct: 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIP 105
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 33.4 bits (77), Expect = 0.20
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 525 TVNIIDIDTCTIIRKLSGHMGQLTDADFSPDSRWLITAS------MDCTIRVW 571
+ D+ I TD ++SPD R+ +TA+ +D ++W
Sbjct: 126 QIEFWDVKNKKKIATAEASNA--TDCEWSPDGRYFLTATTSPRLRVDNGFKIW 176
>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 305
Score = 31.2 bits (71), Expect = 1.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 424 GNFVLIGYSSGHVDRFNIQSGAHRGSY--GHDNQPGHVGGVR 463
G VL+ +SG V RF +Q A G++ P G+R
Sbjct: 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLR 174
>gnl|CDD|234515 TIGR04234, seadorna_RNAP, seadornavirus RNA-directed RNA polymerase.
Members of this protein family are the seadornavirus VP1
protein, the RNA-directed RNA polymerase.
Length = 1144
Score = 31.0 bits (70), Expect = 2.4
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 284 GRLLRIREGHSAP-----PNYIQFYGNSSDNILSAAGDSTLRIFNTKSETSNKNLGIASA 338
LL E H++ PN + Y + + D+T R ++ + NK +GI S
Sbjct: 1053 LELLDFSEMHASSFIQRLPNLMHRYLIEKNVNSTTLYDNTSRTYDVSDASMNKRVGIVSN 1112
Query: 339 NRNN--LKRKNRLEKM 352
NR N R R E M
Sbjct: 1113 NRANSSTSRGYRFEGM 1128
>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ;
Validated.
Length = 392
Score = 30.4 bits (69), Expect = 2.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 249 KVVTGAHFLYNEPLLVTSSPDNTLKLWIFDKADGNGRLLRIREGHSAPP-----NYIQFY 303
K++TG EPLL +L ++D + R ++IR+ S P +Y F
Sbjct: 226 KLITGI----GEPLLG--------RLMVYDALEMTYRTIKIRKDPSTPKITELIDYEAFC 273
Query: 304 GNSSDNILSAAGDSTL 319
G SD AA ST+
Sbjct: 274 GVVSDEAQQAAAGSTI 289
>gnl|CDD|206115 pfam13944, Lipocalin_6, Lipocalin-like domain.
Length = 122
Score = 28.4 bits (64), Expect = 4.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 102 DIVGTYKGHTSPVHLILPFGPHLISVDEESNVKVWDIKAEETYLELSFDNDTFKIMG 158
++ GTYKG + + + + P E+ VK+ KA + ++L+ +F MG
Sbjct: 1 EVAGTYKGTLN-LSVSVVGTP--YGSTEDQKVKIT--KASDGTVKLTLSGFSFTGMG 52
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase.
Length = 361
Score = 29.6 bits (67), Expect = 4.7
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 397 MDDMFLVPERCKQAKQSKPTCVYITHCGNFVLIGYSSGHVDRF 439
MD F +P KQ Q KP GY+S H RF
Sbjct: 93 MDAFFKLPLSEKQRAQRKPGESC----------GYASSHTGRF 125
>gnl|CDD|172532 PRK14038, PRK14038, ADP-dependent glucokinase; Provisional.
Length = 453
Score = 29.0 bits (65), Expect = 7.1
Identities = 19/97 (19%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 130 ESNVKVWDIKAEETYLELSFDND------TFKIMGKRWNSCVNVLEPSPVVDIIGVGLSN 183
++KV + + +LE +F D ++GK ++ +N +E + +++++G
Sbjct: 249 REHLKVLNERGIPAHLEFAFTPDETVREEILGLLGKFYSVGLNEVELASIMEVMGEKTLA 308
Query: 184 KKIILHN----ILTDESLMEFIQTWGPVTALSFRTDG 216
+K++ + I E++++ + G V + F T G
Sbjct: 309 EKLLAKDPVDPIAVTEAMLKLAEKTG-VKRIHFHTYG 344
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,421,355
Number of extensions: 2827781
Number of successful extensions: 2241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2166
Number of HSP's successfully gapped: 44
Length of query: 583
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 481
Effective length of database: 6,413,494
Effective search space: 3084890614
Effective search space used: 3084890614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)