RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14907
(181 letters)
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 143 bits (362), Expect = 7e-43
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFR 127
+TGAGHGIGR A + A L +V D+N+ +TA + K F +D + R
Sbjct: 35 LITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNR 92
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+ + ++ +K+ +G V IL+NNAG++ + + I VN+LAHFW
Sbjct: 93 EDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFW 145
Score = 123 bits (311), Expect = 3e-35
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
+ L T + +I K F+VNV +HFW + FLP M + N GHIV ++S AG V +P L+
Sbjct: 119 VYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLL 178
Query: 61 PYCASKFAVTGAGHGIGRELAIQLAD-LGCTVVC 93
YC+SKFA G + ELA + T +C
Sbjct: 179 AYCSSKFAAVGFHKTLTDELAALQITGVKTTCLC 212
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 117 bits (296), Expect = 1e-32
Identities = 33/107 (30%), Positives = 51/107 (47%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG +G+G L QL + GC V D+ Q++ K + + + ++DV R+
Sbjct: 13 VTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASRE 72
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
++ G V IL NNAG+ QPI + DD ++ VNL
Sbjct: 73 GFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNL 119
Score = 86.7 bits (215), Expect = 5e-21
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR------GHIVGISSMAGIV 54
P++ +S ++ + VN+ + TF+P M+E+ + GH+V +SMA +
Sbjct: 98 NLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL 157
Query: 55 GLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVC 93
+ Y +KFAV G + L ++G +V+C
Sbjct: 158 AAGSPGIYNTTKFAVRGLSESLHYSLL--KYEIGVSVLC 194
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 112 bits (282), Expect = 1e-30
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG A + A G +V D++Q + + + A DV D
Sbjct: 36 VTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLD 93
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+++ + F +G VD++ +NAGI+ P+ DD VI+++L
Sbjct: 94 EMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIH 145
Score = 85.5 bits (212), Expect = 1e-20
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
PL + ++ R + D++++ +E FLP ++E+ GHI +S AG+V L Y
Sbjct: 123 PLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYG 182
Query: 64 ASKFAVTGAGHGIGRELAIQLAD--LGCTVVC 93
+K+ V G+ LA ++ +G +V+C
Sbjct: 183 VAKYGVV----GLAETLAREVKPNGIGVSVLC 210
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 109 bits (276), Expect = 3e-30
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIG+ +A++L G V D N A +IN A ++DV+ RD
Sbjct: 7 VTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRD 64
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
QV A ++ +T+G D+++NNAG+ PI + P+ + V N+N+ W
Sbjct: 65 QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIW 116
Score = 74.9 bits (185), Expect = 5e-17
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
P+++ + E + K++++NV W ++ + ++ G I+ S AG VG P L Y
Sbjct: 94 PIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYS 153
Query: 64 ASKFAVTGAGHGIGRELA 81
+SKFAV G R+LA
Sbjct: 154 SSKFAVRGLTQTAARDLA 171
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 106 bits (267), Expect = 6e-29
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG+ GIGR A G TV D++ E + A +I A+ +MDVT +D
Sbjct: 13 ITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQD 67
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+ A E G +DIL+NNA + PI+ + + +N+ +
Sbjct: 68 SIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLF 119
Score = 77.2 bits (191), Expect = 7e-18
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
P+ + E K+F +NV + L+ M+ + R G I+ ++S AG G + YC
Sbjct: 97 PIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYC 156
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
A+K AV + + + L V +
Sbjct: 157 ATKAAV----ISLTQSAGLDLIKHRINVNAI 183
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 107 bits (270), Expect = 6e-29
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCK---KAFPFEMDVT 125
VTG GIG+ + +L +LG VV E AD++ + P + ++
Sbjct: 23 VTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR 82
Query: 126 FRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
++V + +T G ++ L+NN G P AV+ NL F++
Sbjct: 83 NEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYM 138
Score = 58.8 bits (143), Expect = 6e-11
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P ++ S + + + N+ F++ + M+++ G IV I G P V A
Sbjct: 115 PAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPLAVHSGA 173
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
++ V + + + LA++ A G + CV
Sbjct: 174 ARAGV----YNLTKSLALEWACSGIRINCV 199
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 106 bits (266), Expect = 1e-28
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG +A L G TV DL+ + F E+DVT R
Sbjct: 17 VTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-----NGGFAVEVDVTKRA 71
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
V A QK + +G D+L NAG+ T +P + ++ +VN F
Sbjct: 72 SVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFL 123
Score = 72.2 bits (178), Expect = 6e-16
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
P + ++EE FDVN F + + N G IV +S+A VG P L Y
Sbjct: 101 PAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYS 160
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASKFAV G + LA ++A V CV
Sbjct: 161 ASKFAVF----GWTQALAREMAPKNIRVNCV 187
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 105 bits (264), Expect = 1e-28
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIGR+ L G VV V + A + P +D+ D
Sbjct: 12 VTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWD 65
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+K +G VD+L+NNA ++ QP L + +VNL + F V
Sbjct: 66 AT----EKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQV 114
Score = 76.0 bits (188), Expect = 2e-17
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMME-KNRGHIVGISSMAGIVGLPNLVPY 62
P ++E + F VN+ S F + + DM+ G IV +SSM V PNL+ Y
Sbjct: 90 QPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITY 149
Query: 63 CASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
++K A+ + + +A++L V V
Sbjct: 150 SSTKGAM----TMLTKAMAMELGPHKIRVNSV 177
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 105 bits (264), Expect = 2e-28
Identities = 24/113 (21%), Positives = 35/113 (30%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG L + G V + E + + F DV
Sbjct: 13 VTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDAL 72
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
QV A + T+G IL+NNAG + + + +
Sbjct: 73 QVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHP 125
Score = 78.0 bits (193), Expect = 5e-18
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
T++E + + FS + FLP + + IV ++S+ P++V A
Sbjct: 102 TFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSA 161
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
++ V + R +A + A G V +
Sbjct: 162 ARAGV----KNLVRSMAFEFAPKGVRVNGI 187
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 104 bits (263), Expect = 3e-28
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG+ G+G A LA G V+ D+ A++ D + A DVT
Sbjct: 14 VTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFDVTDEL 71
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ A K+ VDILINNAGI +P++ + ++ VI+ NL + F V
Sbjct: 72 AIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLV 124
Score = 64.4 bits (158), Expect = 3e-13
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPY 62
P+ E +K+ D N+ S F + + M+ +N G I+ I S+ P + PY
Sbjct: 100 KPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPY 159
Query: 63 CASKFAVTG---------AGHGI 76
A+K + A I
Sbjct: 160 TAAKGGIKMLTCSMAAEWAQFNI 182
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 104 bits (263), Expect = 3e-28
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG G+G +A LA+ GC+VV N E ++ A ++ + + F DV+ +
Sbjct: 26 VTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-VETMAFRCDVSNYE 84
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+V + + E G +D ++N AGI P D+ VI VNL ++V
Sbjct: 85 EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYV 137
Score = 66.0 bits (162), Expect = 1e-13
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPY 62
HP + +E R++ +VN+F +++ + E + I+ I S+ V +PN+ Y
Sbjct: 113 HPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAY 172
Query: 63 CASKFAVTGAGHGIGRELAIQLADLGCTV 91
ASK V + + LA + G V
Sbjct: 173 AASKGGV----ASLTKALAKEWGRYGIRV 197
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 104 bits (263), Expect = 3e-28
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG+++A+ A+ G V + + AD+I KA P DVT D
Sbjct: 37 ITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPD 94
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
QV ++ +G +DI + NAGI++ Q +L ++ + + N+ F
Sbjct: 95 QVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLT 147
Score = 63.3 bits (155), Expect = 1e-12
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLP--NLV 60
+ + EE ++I D NV F + M+++ G I+ +SM+G + +
Sbjct: 123 QAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVS 182
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
YC SK AV + + +A++LA V V
Sbjct: 183 HYCTSKAAV----VHLTKAMAVELAPHQIRVNSV 212
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 105 bits (264), Expect = 4e-28
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG G G+G+ + L+ LG V + TA+QI++ K + DV D
Sbjct: 31 ITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPD 89
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
V T ++ + G +I+INNA P P+ + ++ L +V
Sbjct: 90 MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFV 142
Score = 61.1 bits (149), Expect = 8e-12
Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
P + S + I D+ + ++ +++ + + I+++ G +VP
Sbjct: 119 PTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSA 178
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
++K V + + LA + G +
Sbjct: 179 SAKAGV----EAMSKSLAAEWGKYGMRFNVI 205
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 104 bits (261), Expect = 4e-28
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIGR L G VV V Q + + P +D+ +
Sbjct: 12 VTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWE 65
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
++ +VG VD+L+NNA + QP L + VNL A V
Sbjct: 66 AT----ERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQV 114
Score = 75.6 bits (187), Expect = 2e-17
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
P ++E + F+VN+ + + + ++ + G IV +SS + N YC
Sbjct: 91 PFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYC 150
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
++K A+ + + +A++L V V
Sbjct: 151 STKGAL----DMLTKVMALELGPHKIRVNAV 177
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 104 bits (261), Expect = 5e-28
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG G+G+ +A + A G VV +E + +I + +MDV D
Sbjct: 11 ITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPG--QILTVQMDVRNTD 68
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ ++I E G +DILINNA P + +VIN+ L F+
Sbjct: 69 DIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYC 121
Score = 56.7 bits (138), Expect = 2e-10
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
P ++ S + ++ + F+ + +EK G+I+ + + P ++
Sbjct: 98 PAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSA 157
Query: 64 ASKFAVTGAGHGIGRELAIQLA-DLGCTVVCV 94
A+K V + + LA++ G V +
Sbjct: 158 AAKAGV----LAMTKTLAVEWGRKYGIRVNAI 185
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 103 bits (260), Expect = 7e-28
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDL--NQENNAKTADQINTTHNCKKAFPFEMDVTF 126
VTG GIGR ++ +LA G + DL +E A+T I KA +DVT
Sbjct: 7 VTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQ--KAVFVGLDVTD 64
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+ + + E +G D+L+NNAGI +P+L +D+ + +VN+ + F+
Sbjct: 65 KANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFF 118
Score = 75.7 bits (187), Expect = 3e-17
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
PL +EE++++I+ VNVFS F+ ++ E G I+ +S+A I G P L Y
Sbjct: 96 PLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYS 155
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTV 91
+KFAV G+ + A +LA G TV
Sbjct: 156 TTKFAVR----GLTQAAAQELAPKGHTV 179
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 103 bits (260), Expect = 8e-28
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG ++A A G +V + + +D+ D
Sbjct: 25 ITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTD-VHTVAIDLAEPD 83
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
++ E G +D+L+NNAGI PQP++ P A I VNL A +
Sbjct: 84 APAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALL 136
Score = 75.7 bits (187), Expect = 3e-17
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
P+ +T + VN+ + + M+ G I+ ++S A + LP+ YC
Sbjct: 113 PVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYC 172
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK + + LA +L G V
Sbjct: 173 TSKAGL----VMATKVLARELGPHGIRANSV 199
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 103 bits (260), Expect = 8e-28
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
++G G +G LA + A+ G +V E A Q+ T ++A D+T
Sbjct: 16 ISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDA 73
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHFWV 181
QV + + G VD++INNA + P + + I + + +
Sbjct: 74 QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRL 127
Score = 79.9 bits (198), Expect = 9e-19
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P NT+ E +R ++ VF +++ F P +E+++G +V ++SM Y
Sbjct: 104 PFANTTFEHMRDAIELTVFGALRLIQGFTP-ALEESKGAVVNVNSMVVRHSQAKYGAYKM 162
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ + + LA +L + G V V
Sbjct: 163 AKSALL----AMSQTLATELGEKGIRVNSV 188
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 103 bits (260), Expect = 1e-27
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 1/112 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIGRE+A LA +G VV ++E K A +
Sbjct: 33 VTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMT 91
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+ + +G +D+LI N T + + + VN L++
Sbjct: 92 FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVV 143
Score = 97.3 bits (243), Expect = 4e-25
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
L + +RK +VN S+ + LP M++++ G IV +SS+AG V P + Y A
Sbjct: 121 NLFHDDIHHVRKSMEVNFLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSA 179
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVC---VDLNQENNAKTAD 106
SKFA+ G I +E ++ ++ T+ +D A +
Sbjct: 180 SKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGI 224
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 103 bits (259), Expect = 1e-27
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 1/113 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG G GIG +A GC V + A ++ ++ P MDV
Sbjct: 32 ITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLSMDVRAPP 90
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
VMA + + G +DILIN A P + V++++ F V
Sbjct: 91 AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV 143
Score = 65.3 bits (160), Expect = 2e-13
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P S + + D++ F + + G IV I++ G G V +
Sbjct: 120 PAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGS 179
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K AV + R LA++ V +
Sbjct: 180 AKAAV----DAMTRHLAVEWGPQNIRVNSL 205
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 102 bits (257), Expect = 2e-27
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGAG GIG+E+AI A G +VV D+N + D+I +AF D+T
Sbjct: 16 ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQ 73
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
++ A +G VDIL+NNAG D +N+ + F +
Sbjct: 74 ELSALADFAISKLGKVDILVNNAGG-GGPKPFDMPMADFRRAYELNVFSFFHL 125
Score = 73.7 bits (182), Expect = 2e-16
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+ R+ +++NVFS F + + P+M + G I+ I+SMA N+ Y +SK A
Sbjct: 107 PMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAA 166
Query: 70 TGAGHGIGRELAIQLADLGCTVVCV 94
+ R +A L + V +
Sbjct: 167 ----SHLVRNMAFDLGEKNIRVNGI 187
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 101 bits (255), Expect = 5e-27
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG IG LA+ G V+ DL++ K + + MDVT +
Sbjct: 18 VTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTE 75
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHFWV 181
V + + E G VDIL+ AGI + + +++NL F
Sbjct: 76 SVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRS 129
Score = 72.2 bits (178), Expect = 6e-16
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVG--LPNLVPY 62
++ ++ + K D+N+ F + M+E+ +G IV I SM+G++ Y
Sbjct: 106 KAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAY 165
Query: 63 CASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK V H R LA + A G V
Sbjct: 166 NASKAGV----HQYIRSLAAEWAPHGIRANAV 193
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 101 bits (253), Expect = 7e-27
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIG E+ A G ++ +D + A ++ A DVT +
Sbjct: 16 VTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGA----AVAARIVADVTDAE 71
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ A + E V V IL+N+AGI L V+ VN+ FW
Sbjct: 72 AMTAAAAEA-EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWA 123
Score = 68.7 bits (169), Expect = 1e-14
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLP--NLVP 61
H T + R++ VNV FW F M+ + G IV + SM+G +
Sbjct: 99 HDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASS 158
Query: 62 YCASKFAVTGAGHGIGRELAIQLADLGCTV 91
Y ASK AV H + R LA + A G V
Sbjct: 159 YMASKGAV----HQLTRALAAEWAGRGVRV 184
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 100 bits (251), Expect = 1e-26
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFR 127
AV GAG IG E+A + A G TV N E A +I + +D
Sbjct: 11 AVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG--RIVARSLDARNE 68
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
D+V A + +++ I N G PIL V + A F
Sbjct: 69 DEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVS 121
Score = 75.8 bits (187), Expect = 2e-17
Identities = 15/81 (18%), Positives = 33/81 (40%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
P+ T++ RK++++ ++ F M+ +G I + A + G
Sbjct: 94 NVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFA 153
Query: 61 PYCASKFAVTGAGHGIGRELA 81
+ ++KF + + REL
Sbjct: 154 AFASAKFGLRAVAQSMARELM 174
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 100 bits (251), Expect = 2e-26
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG +A G V + + + + +++ K ++ DV+ D
Sbjct: 19 VTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSNTD 77
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
V T Q+I +G + LI NAG+ +P +D V +VN+ F
Sbjct: 78 IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNT 130
Score = 60.3 bits (147), Expect = 2e-11
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAG-IVGLPNL--- 59
P + E+ ++DVNVF F ++K + G IV SSM+ I+ +L
Sbjct: 107 PATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGS 166
Query: 60 ---VPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
V Y +SK A + + LA + A G V +
Sbjct: 167 LTQVFYNSSKAAC----SNLVKGLAAEWASAGIRVNAL 200
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 99.6 bits (249), Expect = 2e-26
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG G+GR L I L + G V + + + + D+ +
Sbjct: 8 VTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHE 62
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
V E G +++++ AG P+ + I V+ NL++ V
Sbjct: 63 DVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILV 115
Score = 92.6 bits (231), Expect = 9e-24
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
P+ + E+IR++ + N+ S + + + ++ + G + + S A VG N
Sbjct: 88 GEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVR-LIGERGGVLANVLSSAAQVGKANES 146
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
YCASK+ + G L +L D +V +
Sbjct: 147 LYCASKWGM----RGFLESLRAELKDSPLRLVNL 176
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 99.6 bits (249), Expect = 3e-26
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG IG A++LA+ G + +D+N+E K + +A + DVT +
Sbjct: 12 VTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEE 69
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNL 175
V+ T + G +D L NNAG P+ DD V+ +N+
Sbjct: 70 AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINV 117
Score = 71.4 bits (176), Expect = 1e-15
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 2 PCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 61
P+++ ++ ++ +NV F +L+ M+ +N G IV +SMAG+ G PN+
Sbjct: 97 AFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAA 156
Query: 62 YCASKFAVTGAGHGIG--RELAIQLADLGCTVVCV 94
Y SK A+ I A+ LA V +
Sbjct: 157 YGTSKGAI------IALTETAALDLAPYNIRVNAI 185
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 99.1 bits (248), Expect = 4e-26
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG + +LA LG +V NQ+ Q + K D++ R
Sbjct: 14 VTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRS 71
Query: 129 QVMATRQKIFET-VGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ + G ++IL+NNAGI+ + +D ++++N A + +
Sbjct: 72 ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHL 125
Score = 74.1 bits (183), Expect = 1e-16
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
K+ + E+ I +N + + + P + RG++V ISS++G + +P Y A
Sbjct: 102 EAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGA 161
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ + R LA + A V V
Sbjct: 162 TKGAM----DQLTRCLAFEWAKDNIRVNGV 187
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 99.5 bits (249), Expect = 4e-26
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG + +LA LG V N++ + + D+ R
Sbjct: 26 VTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRT 83
Query: 129 QVMATRQKIFETV-GAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ Q + G ++IL+NNAG++ + D ++ N A + +
Sbjct: 84 ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHL 137
Score = 77.2 bits (191), Expect = 1e-17
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
K+ +E++ I N + + + + P + G+++ +SS+AG LP++ Y A
Sbjct: 114 EAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSA 173
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK A+ + + + LA + A V V
Sbjct: 174 SKGAI----NQMTKSLACEWAKDNIRVNSV 199
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 99.2 bits (248), Expect = 6e-26
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIGR A L G V VD N E + ++ +K + DV +
Sbjct: 12 VTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQ 71
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
Q+ T +K+ + G +DIL+NNAG+ + + +NL
Sbjct: 72 QLRDTFRKVVDHFGRLDILVNNAGVNN--------EKNWEKTLQINL 110
Score = 59.9 bits (146), Expect = 2e-11
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 9 TSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGH---IVGISSMAGIVGLPNLVPYCAS 65
+E+ K +N+ S L M ++N G I+ +SS+AG++ + YCAS
Sbjct: 97 NNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCAS 156
Query: 66 KFAVTG 71
K + G
Sbjct: 157 KHGIVG 162
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 98.8 bits (247), Expect = 6e-26
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG+ GIG +A A G +V V + + A + + +DV +
Sbjct: 12 ITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVDVATPE 70
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
V A + + + G DIL+NNAG + + I+ A + + ++A
Sbjct: 71 GVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVR 122
Score = 79.5 bits (197), Expect = 1e-18
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ ++E+ + +++ V + + +P M + G I+ +S+ + L Y
Sbjct: 100 TIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNV 159
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ + LA ++ V C+
Sbjct: 160 TKAAL----MMFSKTLATEVIKDNIRVNCI 185
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 98.8 bits (247), Expect = 6e-26
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG G G+GR A++LA G + VD++ E + + T + DV+
Sbjct: 18 ITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEA 77
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNL 175
QV A E G +D NNAGI Q P + + V+++NL
Sbjct: 78 QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINL 125
Score = 70.3 bits (173), Expect = 4e-15
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P ++ + E K+ +N+ F LE L M E+ G +V +S+ GI G+ N Y A
Sbjct: 108 PTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAA 167
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K V G+ R A++ G + +
Sbjct: 168 AKHGVV----GLTRNSAVEYGRYGIRINAI 193
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 98.8 bits (247), Expect = 8e-26
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG G G+GR +A L+ G +VV + A +I DV D
Sbjct: 38 VTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPD 96
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNL 175
QV A + +D+L+NNAG P P+ + ++ NL
Sbjct: 97 QVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANL 144
Score = 65.7 bits (161), Expect = 2e-13
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR--GHIVGISSMAGIVGLPN 58
+P PL+ + E+ I N+ F + M + G I+ S++ PN
Sbjct: 123 VPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPN 182
Query: 59 LVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVD 95
PY A+K A+T G+ + A+ +D
Sbjct: 183 SAPYTATKHAIT----GLTKSTALDGRMHDIACGQID 215
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 98.0 bits (245), Expect = 1e-25
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTH-NCKKAFPFEMDVTFR 127
+TGA GIG +A LA G VV + +++N K D+I ++ + ++ +D+T
Sbjct: 12 ITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDC 71
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+ + I + GAVDIL+N A + L+ D+ ++ +N+
Sbjct: 72 TKADTEIKDIHQKYGAVDILVNAAAMF-MDGSLSEPVDNFRKIMEINV 118
Score = 79.9 bits (198), Expect = 7e-19
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ + RKI ++NV + + IL+T M + G+I ++S A G + Y +
Sbjct: 101 GSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGS 160
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+KFA+ G+ L +LA LG V +
Sbjct: 161 TKFAL----LGLAESLYRELAPLGIRVTTL 186
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 97.6 bits (244), Expect = 1e-25
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GHGIG+++ + + G V +D++++ +A A + F F DV
Sbjct: 7 VTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER------PNLFYFHGDVADPL 60
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ + E + +D+L+NNA + + + ++ +++V L A +
Sbjct: 61 TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPY 111
Score = 54.8 bits (133), Expect = 1e-09
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
L + EE I V + + + + +++ KN+G I+ I+S P+ Y +
Sbjct: 90 ILSSLLYEEFDYILSVGLKAPYELSRLCRDELI-KNKGRIINIASTRAFQSEPDSEAYAS 148
Query: 65 SKFAVTGAGHGIGRELA 81
+K + H + L
Sbjct: 149 AKGGIVALTHALAMSLG 165
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 98.4 bits (246), Expect = 1e-25
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG G GIGR A A G VV D+N++ + A++I KAF +DV+
Sbjct: 32 VTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAK 86
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+ +K G VD+L+NNAG T ++T + +++VN+
Sbjct: 87 DAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNV 133
Score = 77.2 bits (191), Expect = 1e-17
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ EE +I VNV F + +P M G I+ +S + + Y A
Sbjct: 116 NVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVA 175
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK A++ + R +A+ A G V V
Sbjct: 176 SKGAIS----SLTRAMAMDHAKEGIRVNAV 201
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 98.4 bits (246), Expect = 1e-25
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIG +A +LAD GC V+C D++ + A +I A +DV+
Sbjct: 34 VTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGC-----GAAACRVDVSDEQ 88
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
Q++A G VD L+ NAG++ ++ +D VI +NL
Sbjct: 89 QIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINL 135
Score = 76.4 bits (189), Expect = 2e-17
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
L +T+ E+ ++ +N+ + + P M+E+ G IV +SS+AG V + Y
Sbjct: 118 SLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGM 177
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK + + R A +L G +
Sbjct: 178 SKAGII----QLSRITAAELRSSGIRSNTL 203
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 97.6 bits (244), Expect = 1e-25
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIGR +A A G +VV DL E A I KA E +VT
Sbjct: 17 VTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG--KAIGLECNVTDEQ 74
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
A + + G + +L+NNAG D +NL + F +
Sbjct: 75 HREAVIKAALDQFGKITVLVNNAGG-GGPKPFDMPMSDFEWAFKLNLFSLFRL 126
Score = 69.1 bits (170), Expect = 8e-15
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+ F +N+FS F + + P M + G I+ ISSMAG + Y +SK AV
Sbjct: 108 PMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAV 167
Query: 70 TGAGHGIGRELAIQLADLGCTVVCV 94
+ + R +A + +G V +
Sbjct: 168 ----NHLTRNIAFDVGPMGIRVNAI 188
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 97.6 bits (244), Expect = 2e-25
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG GIG +A + + G V+ + + K A + T F+ D + D
Sbjct: 11 ITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQ---IQFFQHDSSDED 67
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+ G V L+NNAGI + + + ++ VNL F+
Sbjct: 68 GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFF 119
Score = 70.2 bits (173), Expect = 3e-15
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGH-IVGISSMAGIVGLPNLVPY 62
++ T+ E RK+ VN+ F+ + M K G I+ +SS+ G VG P+L Y
Sbjct: 96 KSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAY 155
Query: 63 CASKFAVTGAGHGIGRELAIQLA 85
ASK AV + + A+ A
Sbjct: 156 NASKGAVR----IMSKSAALDCA 174
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 97.6 bits (244), Expect = 2e-25
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIGR +A A G V + + ++ + K + DV+ R
Sbjct: 15 VTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK-VIGVQTDVSDRA 73
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
Q A + E G +D++ NAG+ P+ T P+ + + VN+ F+
Sbjct: 74 QCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYA 126
Score = 53.7 bits (130), Expect = 3e-09
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFA 68
+ E++ IF VNV F+ ++ L ++ G +V SS+ G I G P Y A+K A
Sbjct: 108 TPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAA 167
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCV 94
G R AI+LA TV +
Sbjct: 168 QL----GFMRTAAIELAPHKITVNAI 189
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 96.8 bits (242), Expect = 2e-25
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINT-THNCKKAFPFEMDVTFR 127
VTGA GIG A A G +VV + + + A+ +DQI + ++
Sbjct: 19 VTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATA 78
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHFW 180
Q ++ G +D L++NA I+ P+ P+ +D + V++VN+ A F
Sbjct: 79 QQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFM 132
Score = 65.2 bits (160), Expect = 2e-13
Identities = 21/67 (31%), Positives = 29/67 (43%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
PL+ +E+ ++ VNV + F + LP + I SS G G N Y
Sbjct: 110 PLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGV 169
Query: 65 SKFAVTG 71
SKFA G
Sbjct: 170 SKFATEG 176
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 97.6 bits (244), Expect = 3e-25
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQIN-TTHNCKKAFPFEMDVTFR 127
VTG G GIG+ +A L G +V+ V N + A ++ N D+T
Sbjct: 16 VTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNE 75
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHFWV 181
D+ + G + +++ AG PI + +++N+ +V
Sbjct: 76 DETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYV 130
Score = 77.2 bits (191), Expect = 1e-17
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P+ E R+ D+NV ++L+ +M+ G VGISS+A Y
Sbjct: 107 PITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGV 166
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K AV + + A +L V +
Sbjct: 167 TKSAV----DHLMQLAADELGASWVRVNSI 192
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 97.7 bits (244), Expect = 3e-25
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA +GIG +A A G T+V D+NQE + A + DVT D
Sbjct: 39 VTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAY--KAAGINAHGYVCDVTDED 96
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ A +I VG +DIL+NNAGI+ P++ VI+++L A F
Sbjct: 97 GIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPF 147
Score = 59.9 bits (146), Expect = 2e-11
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 63
P+ + + R++ D+++ + F + + +P M++K G I+ I SM +G + Y
Sbjct: 125 VPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYA 184
Query: 64 ASKFAVTGAGHGIGRELA 81
A+K + I E
Sbjct: 185 AAKGGLKMLTKNIASEYG 202
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 96.8 bits (242), Expect = 3e-25
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG+G GIG+ A LA G VV D+N E A QI A +DV+ +
Sbjct: 14 VTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG--TAISVAVDVSDPE 71
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTP---QPILTAKPDDIVAVINVNL 175
A + G +D L+NNA I +LT P+ ++VNL
Sbjct: 72 SAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNL 121
Score = 60.2 bits (147), Expect = 1e-11
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
L E +K VN+ W M ++ G IV SS A + Y
Sbjct: 104 FLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLYSNY---YGL 160
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K + G+ ++L+ +L + +
Sbjct: 161 AKVGIN----GLTQQLSRELGGRNIRINAI 186
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 96.8 bits (242), Expect = 3e-25
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGAG G G +A + A G VV VD ++ + A +I A D++
Sbjct: 14 ITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG-----DAALAVAADISKEA 68
Query: 129 QVMATRQKIFETVGAVDILINNAGIM-TPQPILTAKPDDIVAVINVNLLAHFW 180
V A + G VDIL+NNAGI PQ +P++ ++ VN+ +
Sbjct: 69 DVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYL 121
Score = 76.8 bits (190), Expect = 1e-17
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGH----IVGISSMAGIVGLPNLV 60
+ EE +I VNV + + +P E I+ ++S PNL
Sbjct: 99 NAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLA 158
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y A+K V + LAI+LA VV +
Sbjct: 159 WYNATKGWVVSV----TKALAIELAPAKIRVVAL 188
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 97.3 bits (243), Expect = 4e-25
Identities = 27/111 (24%), Positives = 45/111 (40%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG+ GIG +A LA G +V + +T + D+T
Sbjct: 30 ITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPS 89
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
++ + + G DIL+NNAG+ + I + +I VNL + F
Sbjct: 90 EIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSF 140
Score = 64.6 bits (158), Expect = 4e-13
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+++ E+ +I VN+ S F + +P M +K G I+ I+S G+V P Y A
Sbjct: 119 KIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVA 178
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K + G+ + +A+++A+ G TV +
Sbjct: 179 AKHGIM----GLTKTVALEVAESGVTVNSI 204
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 96.9 bits (242), Expect = 4e-25
Identities = 38/112 (33%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG G+GR +A+ LA G V + +TA +I A DVT D
Sbjct: 33 VTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGD-----DALCVPTDVTDPD 87
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHF 179
V A E G VD+L NNAG P P+ V++ NL F
Sbjct: 88 SVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF 139
Score = 68.4 bits (168), Expect = 2e-14
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR--GHIVGISSMAGIVGLPNLVPY 62
P+++ + + +++ D N+ F + M + G I+ S++ P PY
Sbjct: 118 PMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPY 177
Query: 63 CASKFAVTGAGHGIGRELAIQLADLGCTVVCVD 95
A+K A+T G+ + ++ +D
Sbjct: 178 TATKHAIT----GLTKSTSLDGRVHDIACGQID 206
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 96.9 bits (242), Expect = 4e-25
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTT-HNCKKAFPFEMDVTFR 127
+TG+ +GIGR AI A G V + E +T I + + K+ DVT
Sbjct: 11 ITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTE 70
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIV----AVINVNL 175
D + G +D+L+NNAG P T D + + +NL
Sbjct: 71 DGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNL 122
Score = 59.1 bits (144), Expect = 4e-11
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 5 PLKNTSEEEI----RKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSM-AGIVGLPNL 59
T ++ K +N+ + + + P + ++G IV +SS+ AG P+
Sbjct: 101 AFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKP-HLVASKGEIVNVSSIVAGPQAQPDF 159
Query: 60 VPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+ Y +K A+ R AI LA G V V
Sbjct: 160 LYYAIAKAALD----QYTRSTAIDLAKFGIRVNSV 190
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 96.5 bits (241), Expect = 5e-25
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VT G+G A++LA G ++ N+E A +I + + + D+
Sbjct: 12 VTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPG 71
Query: 129 QVMATRQKIFETV---GAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+ ++FE G DIL+ + G P + +D + + W
Sbjct: 72 DI----DRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVW 122
Score = 70.6 bits (174), Expect = 2e-15
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
E+ + + + S W+ M+EK G +V I S+ + +L
Sbjct: 100 RFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNI 159
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+ V G+ R LA++LA G TV V
Sbjct: 160 MRLPVI----GVVRTLALELAPHGVTVNAV 185
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 96.1 bits (240), Expect = 7e-25
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG +A +L LG VV + E +I +A D++ D
Sbjct: 34 VTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREI--VAAGGEAESHACDLSHSD 91
Query: 129 QVMATRQKIFETVGAVDILINNAGIM-TPQPILTAKPDDIVAVINVNLLAHFW 180
+ A + G D+L+NNAG+ P+ T KP + A+I VNL A +
Sbjct: 92 AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYL 144
Score = 69.5 bits (171), Expect = 6e-15
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
PL E + VN+ + + +L F P M+ RGHI+ ISS+AG + + Y A
Sbjct: 122 PLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTA 181
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK+ + G+ A +L V V
Sbjct: 182 SKWGLN----GLMTSAAEELRQHQVRVSLV 207
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 96.0 bits (240), Expect = 7e-25
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG + + A G + N+ + + + D + R
Sbjct: 19 VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK--KGFQVTGSVCDASLRP 76
Query: 129 QVMATRQKIFETVGA-VDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ Q + G +DILINN G + +P L +D I+ NL + + +
Sbjct: 77 EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHL 130
Score = 68.7 bits (169), Expect = 1e-14
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P + + E+ N+ S + + + P + G+I+ +SS+AG+V Y A
Sbjct: 107 PTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSA 166
Query: 65 SKFAVTGAGHGIGRELA 81
+K A+ + E A
Sbjct: 167 TKGALNQLARNLACEWA 183
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 96.0 bits (240), Expect = 7e-25
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG G+G E A Q G VV D+ E A TA ++ A +DVT +
Sbjct: 10 ITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGD-----AARYQHLDVTIEE 64
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
E G+VD L+NNAGI T + T + V+ +NL
Sbjct: 65 DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINL 111
Score = 73.7 bits (182), Expect = 2e-16
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 63
L+ S E RK+ ++N+ F ++T +P M + G IV ISS AG++GL Y
Sbjct: 93 MFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYG 152
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK+ V G+ + A++L V V
Sbjct: 153 ASKWGVR----GLSKLAAVELGTDRIRVNSV 179
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 96.5 bits (241), Expect = 7e-25
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGAG GIGR A+ LA G TV + + + AD+I +A E DV+
Sbjct: 33 ITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGG--QAIALEADVSDEL 90
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNL 175
Q+ + + G +DI++ NAGI PI KP + I VNL
Sbjct: 91 QMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNL 138
Score = 62.6 bits (153), Expect = 2e-12
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGI--VGLPNLVPY 62
P+ + E + VN+ F L +P + ++ G IV +SS+ G P Y
Sbjct: 121 PIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAY 180
Query: 63 CASKFAVTGAGHGIGRELAIQLADLGCTV--VC 93
A+K A I ++LA++L V VC
Sbjct: 181 TATKAAQV----AIVQQLALELGKHHIRVNAVC 209
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 96.5 bits (241), Expect = 7e-25
Identities = 32/109 (29%), Positives = 48/109 (44%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG +A L G VV N + A + + P+ D++ +
Sbjct: 37 VTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEE 96
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLA 177
+++ I VDI INNAG+ P +L+ + NVN+LA
Sbjct: 97 DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLA 145
Score = 63.4 bits (155), Expect = 1e-12
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKN--RGHIVGISSMAG--IVGL 56
L + S + +F+VNV + M E+N GHI+ I+SM+G ++ L
Sbjct: 122 ARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPL 181
Query: 57 PNLVPYCASKFAVT 70
Y A+K+AVT
Sbjct: 182 SVTHFYSATKYAVT 195
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 95.6 bits (239), Expect = 1e-24
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIGR +A + A VV V+L ++ + ++ K+ + DV+ +
Sbjct: 12 VTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKK 69
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNL 175
V ++ FET +D+L NNAGIM P+ + V+ VNL
Sbjct: 70 DVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNL 117
Score = 67.9 bits (167), Expect = 2e-14
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P+ S+E ++ VN++S F+ +P M+++ +G IV +S+AGI G PY
Sbjct: 100 PVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTV 159
Query: 65 SKFAVTGAGHGIG--RELAIQLADLGCTVVCV 94
+K + IG R +A D G V V
Sbjct: 160 AKHGL------IGLTRSIAAHYGDQGIRAVAV 185
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 97.2 bits (242), Expect = 1e-24
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCK-----KAFPFEMD 123
+TGA GIG+ +A++ A G +V + + K I T KA P +D
Sbjct: 50 ITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVD 109
Query: 124 VTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
V Q+ A +K + G +DIL+NNA ++ L + ++NVN +
Sbjct: 110 VRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLA 167
Score = 64.1 bits (156), Expect = 1e-12
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVG--LPNLVPY 62
+T + + + +VN + + +P + + HI+ IS + Y
Sbjct: 144 NTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAY 203
Query: 63 CASKFAVTGAGHGIGRELA 81
+K+ ++ G+ E
Sbjct: 204 TIAKYGMSMYVLGMAEEFK 222
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 95.3 bits (238), Expect = 1e-24
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIGR A G ++V VD + A+ + +A DV+
Sbjct: 11 VTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPK 65
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V A + E G + + + AG+ + V+ VNL F
Sbjct: 66 AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSF 116
Score = 47.1 bits (113), Expect = 6e-07
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
N E K+ VN+ F + + E G +V S+AG +G L Y A
Sbjct: 95 LSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG--GSLVLTGSVAG-LGAFGLAHYAA 151
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
K V G+ R LA++LA G V +
Sbjct: 152 GKLGVV----GLARTLALELARKGVRVNVL 177
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 95.3 bits (238), Expect = 2e-24
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG+ GIG +A A G V + + K T + ++ +++
Sbjct: 39 VTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPK 96
Query: 129 QVMATRQKIFETVGAVDILINNAGI--MTPQPILTAKPDDIVAVINVNLLAHFWV 181
V T + + G +D+ + NAG+ I D +I+V+L ++
Sbjct: 97 SVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYC 151
Score = 62.6 bits (153), Expect = 3e-12
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAG-IVGLPNL-VPY 62
+ + + KI V++ ++ + +G ++ SS++G IV +P L PY
Sbjct: 128 EIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPY 187
Query: 63 CASKFAVTGAGHGIGRELAIQLADLG 88
+K A + + LAI+ A
Sbjct: 188 NTAKAAC----THLAKSLAIEWAPFA 209
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 94.9 bits (237), Expect = 2e-24
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINT-THNCKKAFPFEMDVTFR 127
VTGA GIGRE A+ A G TV+ + N+E + A IN T + F ++
Sbjct: 17 VTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTS 76
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHF 179
+ Q+I +D +++NAG++ P+ P V+ VN+ A F
Sbjct: 77 ENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATF 129
Score = 65.6 bits (161), Expect = 1e-13
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P+ + + + + VNV + F + + LP +++ + G +V SS G G N Y A
Sbjct: 108 PMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAA 167
Query: 65 SKFAVTG 71
SKFA G
Sbjct: 168 SKFATEG 174
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 94.9 bits (237), Expect = 2e-24
Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG+ +A +LA G TV+ D+N E A I KKA D++
Sbjct: 11 VTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG-----KKARAIAADISDPG 65
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V A +I G +DIL+NNA I+ D +I+VNL F
Sbjct: 66 SVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTF 116
Score = 51.7 bits (125), Expect = 1e-08
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFA 68
+ RKI DVN+ F + M + G ++ I+S G PN+ Y A+K
Sbjct: 100 DLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGG 159
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCV 94
V G R LA +L T V
Sbjct: 160 VI----GFTRALATELGKYNITANAV 181
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 95.8 bits (239), Expect = 2e-24
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIGR +A A G V + + ++ +DV+
Sbjct: 46 VTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGE-LGAGNVIGVRLDVSDPG 104
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ + + GA+D++ NAGI + T P+ + V++VN+
Sbjct: 105 SCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTV 155
Score = 49.5 bits (119), Expect = 1e-07
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFA 68
+ E++ ++ DVNV + ++ L + RG ++ SS+ G + G P Y ASK A
Sbjct: 139 TPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAA 198
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCV 94
G R AI+LA G TV +
Sbjct: 199 QL----GFMRTAAIELAPRGVTVNAI 220
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 95.0 bits (237), Expect = 2e-24
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIGR +A+QL G TV + + A + + P D +
Sbjct: 10 VTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA--QSLGGQCVPVVCDSSQES 67
Query: 129 QVMATRQKIF-ETVGAVDILINNAGIMTPQ-------PILTAKPDDIVAVINVNLLAHF 179
+V + +++ E G +D+L+NNA + NV L H+
Sbjct: 68 EVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHY 126
Score = 66.5 bits (163), Expect = 7e-14
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
T I +V + H++ M+ +G IV ISS + + N VPY
Sbjct: 105 AFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFN-VPYGV 163
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
K A + + A +L G + V +
Sbjct: 164 GKAAC----DKLAADCAHELRRHGVSCVSL 189
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 94.9 bits (237), Expect = 2e-24
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 69 VTGA-GHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFR 127
VT A G GIG A + G VV D ++ +T DQ+ + DVT
Sbjct: 27 VTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTST 85
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+ V A + E G +D+L+NNAG+ P++ ++ V+NV L
Sbjct: 86 EAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTL 133
Score = 57.9 bits (141), Expect = 8e-11
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
P+ + ++EE ++ +V + S L + G IV +S+ G + Y
Sbjct: 116 PVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYA 175
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
A+K V + R AI+ + G + V
Sbjct: 176 AAKAGVM----ALTRCSAIEAVEFGVRINAV 202
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 94.9 bits (237), Expect = 2e-24
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG+ GIG+ +A L G V+ +EN +T +I + P D+
Sbjct: 15 VTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQ 74
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
Q + E VDILINN GI P +D + VN+++
Sbjct: 75 GC----QDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVR 122
Score = 71.4 bits (176), Expect = 1e-15
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ +E+ K+F+VN+ S + ++L M+E+ G ++ I+S A I+ + Y A
Sbjct: 100 EYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSA 159
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K + R LA TV +
Sbjct: 160 TKTMQ----LSLSRSLAELTTGTNVTVNTI 185
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 95.0 bits (237), Expect = 2e-24
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG +A LA G V + +N + D + + DVT D
Sbjct: 29 VTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH--DVDGSSCDVTSTD 86
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+V A E G + IL+N+AG V++ NL F
Sbjct: 87 EVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVF 137
Score = 52.2 bits (126), Expect = 1e-08
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLP--DMMEKNRGHIVGISSMAGIVGLPNLVPY 62
+ + + D N+ F + L M E G IV I+S G G+ PY
Sbjct: 116 ETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPY 175
Query: 63 CASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK V G + + +LA G TV V
Sbjct: 176 TASKHGV----VGFTKSVGFELAKTGITVNAV 203
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 94.5 bits (236), Expect = 2e-24
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 69 VTGAGH--GIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVT 125
VTGA G+G E A A++G V ++ A + ++ T+ KA ++ V
Sbjct: 25 VTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYG-IKAKAYKCQVD 83
Query: 126 FRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ + + G +D I NAG IL + V+ V+L F
Sbjct: 84 SYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHC 139
Score = 61.0 bits (149), Expect = 7e-12
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVG--LPNLVPY 62
+ + S E + V++ F + E+ G +V +SM+G + Y
Sbjct: 116 GILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSY 175
Query: 63 CASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K + R LA + D V +
Sbjct: 176 NVAKAGC----IHMARSLANEWRD-FARVNSI 202
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 94.5 bits (236), Expect = 3e-24
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG G+G E+ L G V D+N+ + A ++ ++ DV+
Sbjct: 11 VTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE-----RSMFVRHDVSSEA 65
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+ +G +++L+NNAGI+ P + T + +D ++ +N + F
Sbjct: 66 DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFI 117
Score = 72.9 bits (180), Expect = 3e-16
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 63
++ E+ ++ +N S F + + M++ G I+ ++S++ + + Y
Sbjct: 94 GDMETGRLEDFSRLLKINTESVFIGCQQGIA-AMKETGGSIINMASVSSWLPIEQYAGYS 152
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTV 91
ASK AV+ + R A+ G +
Sbjct: 153 ASKAAVS----ALTRAAALSCRKQGYAI 176
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 94.6 bits (236), Expect = 3e-24
Identities = 29/111 (26%), Positives = 44/111 (39%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG+ GIG +A LA G +V + + K D++ +
Sbjct: 9 VTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGE 68
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V +G +DIL+NNAGI I + A++ +NL A F
Sbjct: 69 AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVF 119
Score = 63.4 bits (155), Expect = 1e-12
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 63
+++ E+ I +N+ + F LP M ++ G I+ I+S G+V N Y
Sbjct: 97 ALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYV 156
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
A+K V G + A++ A G T +
Sbjct: 157 AAKHGVV----GFTKVTALETAGQGITANAI 183
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 94.1 bits (235), Expect = 3e-24
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA G G +A + G V +DL+ E +TA K DV
Sbjct: 7 VTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTH-WHAYADKVLRVRADVADEG 65
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ---PILTAKPDDIVAVINVNL 175
V A E GA+D+L+NNAGI + T + V+ VN+
Sbjct: 66 DVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNV 115
Score = 75.6 bits (187), Expect = 3e-17
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
L T E+ K+ VNV F LP M+ + G IV I+S+A +V P Y
Sbjct: 98 VLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTT 157
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK AV + + +A+ A G V
Sbjct: 158 SKGAVL----QLTKSVAVDYAGSGIRCNAV 183
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 94.1 bits (235), Expect = 3e-24
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIGR +A A G V DL E + A+ I F++D+
Sbjct: 11 VTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI-------GGAFFQVDLEDER 62
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+ + ++ +G VD+L+NNA I P LT + + V+ VNL
Sbjct: 63 ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNL 109
Score = 74.4 bits (184), Expect = 1e-16
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
E R++ +VN+ + + +M + G IV ++S+ G+ Y A
Sbjct: 92 SALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNA 151
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK + + R LA+ LA L V V
Sbjct: 152 SKGGL----VNLTRSLALDLAPLRIRVNAV 177
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 94.1 bits (235), Expect = 3e-24
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
+TG+ G+G+ +AI+ A VV ++E+ A ++I +A + DVT
Sbjct: 12 ITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK--VGGEAIAVKGDVTVE 69
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V+ Q + G +D++INNAG+ P D VI+ NL F
Sbjct: 70 SDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF 121
Score = 62.5 bits (153), Expect = 2e-12
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMME-KNRGHIVGISSMAGIVGLPNLVPYC 63
S + K+ D N+ F + +E +G ++ +SS+ + P V Y
Sbjct: 100 SSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYA 159
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK + + LA++ A G V +
Sbjct: 160 ASKGGM----KLMTETLALEYAPKGIRVNNI 186
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 94.6 bits (236), Expect = 4e-24
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTT-HNCK----KAFPFEMD 123
+TGA GIG +A++ A G V + N K I++ + + D
Sbjct: 11 ITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCD 70
Query: 124 VTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ DQV A +T G +DIL+NNA + + L + VN F
Sbjct: 71 IREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVC 128
Score = 60.7 bits (148), Expect = 1e-11
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVG--LPNLVPY 62
+T + + VN F + LP +++ HI+ ++ + Y
Sbjct: 105 GTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGY 164
Query: 63 CASKFAVTGAGHGIGRELA 81
+K ++ G+ E
Sbjct: 165 TLAKMGMSLVTLGLAAEFG 183
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 93.7 bits (234), Expect = 4e-24
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG +GIGR +A + A G + DL + I ++ + DV+
Sbjct: 12 ITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLG--RRVLTVKCDVSQPG 67
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
V A +++ T G DIL+NNAGI P + +N+
Sbjct: 68 DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINV 114
Score = 64.0 bits (157), Expect = 5e-13
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P + E+ +K F++NV S F + + F+P M G I+ ++S + + Y +
Sbjct: 97 PFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYIS 156
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A G R LA L G TV +
Sbjct: 157 TKAAN----IGFTRALASDLGKDGITVNAI 182
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 94.1 bits (235), Expect = 4e-24
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VT + GIG +A +LA G VV QEN +T + V +
Sbjct: 19 VTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAE 76
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTP--QPILTAKPDDIVAVINVNLLAHFW 180
G VDIL++NA + P I+ A + +++VN+ A
Sbjct: 77 DRERLVAMAVNLHGGVDILVSNAAV-NPFFGNIIDATEEVWDKILHVNVKATVL 129
Score = 80.6 bits (200), Expect = 4e-19
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ + +EE KI VNV + + + +P+M ++ G ++ +SS+ PNL PY
Sbjct: 107 NIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNV 166
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK A+ G+ + LA++LA V C+
Sbjct: 167 SKTALL----GLTKNLAVELAPRNIRVNCL 192
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 93.4 bits (233), Expect = 9e-24
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTT-HNCKKAFPFEMDVTFR 127
+TG+ +GIGR A+ A G V + E +T QI + + DVT
Sbjct: 11 ITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTD 70
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQP----ILTAKPDDIVAVINVNL 175
G +DIL+NNAG P + A +N+NL
Sbjct: 71 AGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNL 122
Score = 63.8 bits (156), Expect = 8e-13
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMA-GIVGLPNLVPYC 63
S E ++N+ S + + +P + +G IV ISS+A G+ P+ Y
Sbjct: 105 TGTAQSIESYDATLNLNLRSVIALTKKAVP-HLSSTKGEIVNISSIASGLHATPDFPYYS 163
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ R AI L G V +
Sbjct: 164 IAKAAID----QYTRNTAIDLIQHGIRVNSI 190
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 92.6 bits (231), Expect = 1e-23
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG +A LA G + + + K A ++ + F +DV+ +
Sbjct: 7 ITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVE-VFYHHLDVSKAE 65
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
V +K+ E G VD+++ NAG+ + + ++ +I VNLL +
Sbjct: 66 SVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRT 118
Score = 69.5 bits (171), Expect = 4e-15
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
L+ SEEE ++ +VN+ + L+ FL + +V S ++ + +P
Sbjct: 91 GYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARL-IPYGG 149
Query: 61 PYCASKFAVTG 71
Y ++K+A
Sbjct: 150 GYVSTKWAARA 160
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 93.0 bits (232), Expect = 1e-23
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
VTG+ G+G+ AI+LA+ G +V + A +TA++I K + +V
Sbjct: 9 VTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEI--EKLGVKVLVVKANVGQP 66
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
++ Q+I ET G +D+ +NNA +P++ + +N+N A +
Sbjct: 67 AKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFC 120
Score = 68.3 bits (168), Expect = 2e-14
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P+ E ++N + + + M + GHIV ISS+ I L N
Sbjct: 97 PVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGV 156
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK A+ + R LA++L+ V V
Sbjct: 157 SKAAL----EALTRYLAVELSPKQIIVNAV 182
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 93.0 bits (232), Expect = 1e-23
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG + L G VV V L+++++ +D DVT +
Sbjct: 19 VTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKI------------DVTNEE 66
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+V +K + G +DIL+NNAGI P+ + +I+VN+
Sbjct: 67 EVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNV 113
Score = 72.6 bits (179), Expect = 5e-16
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
PL T E R+I DVNV + + + +P M+ G I+ I+S+ N Y
Sbjct: 96 PLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVT 155
Query: 65 SKFAVTGAGHGIGRELAIQLA 85
SK A+ G+ R +AI A
Sbjct: 156 SKHAL----LGLTRSVAIDYA 172
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 93.0 bits (232), Expect = 1e-23
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIGR +A A G V+ + + AD+I A D+ +
Sbjct: 36 VTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGG--GSAEAVVADLADLE 92
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+++ VD+L+NNAGI+ P V+ VNL A + +
Sbjct: 93 GAANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVL 144
Score = 66.0 bits (162), Expect = 1e-13
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 63
P + S R++ VN+ + + + +F M+ G IV I+SM G N+ Y
Sbjct: 120 APAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYA 179
Query: 64 ASKFAVTG---------AGHGI 76
ASK AV G AG G+
Sbjct: 180 ASKHAVVGLTRALASEWAGRGV 201
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 92.2 bits (230), Expect = 1e-23
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA HGIGR A G +V D+ + + A+ + A P MDV
Sbjct: 10 ITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPA 62
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V + +G +D +++ AGI +D V+ VNL F
Sbjct: 63 SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSF 113
Score = 44.4 bits (106), Expect = 4e-06
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNL--VPYCASKF 67
E+ + VN+ F + + M EKN G IV +S V L NL Y AS
Sbjct: 97 PLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS---RVYLGNLGQANYAASMA 153
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCV 94
V G+ R LA++L G V +
Sbjct: 154 GVV----GLTRTLALELGRWGIRVNTL 176
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 92.2 bits (230), Expect = 1e-23
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+T A GIG+ A+ A G V+ D+N+ + +DVT +
Sbjct: 11 LTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPG-------IQTRVLDVTKKK 63
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
Q+ + V +D+L N AG + +L + D +N+N+ + + +
Sbjct: 64 QI----DQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLM 112
Score = 73.7 bits (182), Expect = 2e-16
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYC 63
+ + E++ ++NV S + +++ FLP M+ + G+I+ +SS+A V G+ N Y
Sbjct: 89 TVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYS 148
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K AV G+ + +A G CV
Sbjct: 149 TTKAAV----IGLTKSVAADFIQQGIRCNCV 175
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 92.7 bits (231), Expect = 2e-23
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTT-HNCK----KAFPFEMD 123
++G GIG +A ++A G V V + E + K I T + +A P D
Sbjct: 14 ISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGD 73
Query: 124 VTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ D V A K E G +DI +NNA + I + + + + V
Sbjct: 74 IRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAV 131
Score = 62.3 bits (152), Expect = 3e-12
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGI-VGLPNLVPYC 63
++ + + + V + + ++ +P M ++ HI+ +S + PY
Sbjct: 108 SIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYM 167
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K+ +T GI E L D G +
Sbjct: 168 MAKYGMTLCALGIAEE----LRDAGIASNTL 194
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 92.6 bits (231), Expect = 2e-23
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
V+G G+G + G VV D+ E A ++ A +DVT
Sbjct: 12 VSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPA 66
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
Q A G + +L+NNAGI+ I + +++VNL
Sbjct: 67 QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNL 113
Score = 74.1 bits (183), Expect = 1e-16
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 63
+++ + E ++I DVN+ F + + M E RG I+ ISS+ G+ G Y
Sbjct: 95 GTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYT 154
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
A+KFAV G+ + A++L G V +
Sbjct: 155 ATKFAVR----GLTKSTALELGPSGIRVNSI 181
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 91.8 bits (229), Expect = 2e-23
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIGR +A L G V N E A++ A P D+ +D
Sbjct: 7 VTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL----------GAVPLPTDLE-KD 55
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
++ E +G + +L++ A + +P L ++ V+ ++L F +
Sbjct: 56 DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLL 108
Score = 62.9 bits (154), Expect = 1e-12
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNL--VP 61
P S EE R++ +++ F + + P M E G ++ I S+ +
Sbjct: 84 KPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPA 143
Query: 62 YCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y +K A+ G+ R LA + A LG V +
Sbjct: 144 YTTAKTAL----LGLTRALAKEWARLGIRVNLL 172
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 92.2 bits (230), Expect = 2e-23
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG E + LA G VV DL + + A A + A +D+T
Sbjct: 16 ITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGR-----GAVHHVVDLTNEV 70
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ--PILTAKPDDIVAVINVNL 175
V A +T G +DI+ NNA P + D VN
Sbjct: 71 SVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNA 119
Score = 71.8 bits (177), Expect = 1e-15
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ + + F VN + + +P ++ G IV ISS Y
Sbjct: 102 LVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYAC 161
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ + R +A Q G +
Sbjct: 162 TKAAIE----TLTRYVATQYGRHGVRCNAI 187
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 92.3 bits (230), Expect = 3e-23
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTT-HNCKKAFPFEMDVTFR 127
+TG+ +GIGR A+ A G V N++ +T QI +K DVT
Sbjct: 31 ITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEA 90
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTA--KPDDIVAVINVNLLAHFW 180
G +DIL+NNAG + +N A
Sbjct: 91 SGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIE 145
Score = 64.9 bits (159), Expect = 3e-13
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSM-AGIVGLPNLVPYC 63
+ E +K F +N + + + + K +G IV +SS+ AG Y
Sbjct: 123 ANTDQPVELYQKTFKLNFQAVIEMTQKTKE-HLIKTKGEIVNVSSIVAGPQAHSGYPYYA 181
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ R AI L G V V
Sbjct: 182 CAKAALD----QYTRCTAIDLIQHGVRVNSV 208
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 91.5 bits (228), Expect = 4e-23
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
+TG+ GIG A A G V N +T + A F D+
Sbjct: 12 ITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATS 69
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHF 179
+ + G +D+LINNAG + + P+ AV++ N+ +
Sbjct: 70 EACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVV 122
Score = 56.4 bits (137), Expect = 3e-10
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-----GHIVGISSMAGIVG-LPN 58
PL + + D N+ S + LP + + ++ S+AG G P
Sbjct: 101 PLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPG 160
Query: 59 LVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y A+K + H + + G V
Sbjct: 161 AGLYGAAKAFL----HNVHKNWVDFHTKDGVRFNIV 192
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 91.5 bits (228), Expect = 4e-23
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIGR +A + D G V+ + ++ AK E DVT D
Sbjct: 13 VTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAK-------------YDHIECDVTNPD 59
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
QV A+ IF+ G++ +L+NNAGI + I + + +I+VNL
Sbjct: 60 QVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNL 106
Score = 72.2 bits (178), Expect = 6e-16
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+++ S E R+I DVN+F +++ + +P M+ IV ISS+ + N Y
Sbjct: 89 KIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVT 148
Query: 65 SKFAVTGAGHGIGRELAIQLAD 86
SK AV G+ + +A+ A
Sbjct: 149 SKHAV----IGLTKSIALDYAP 166
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 91.5 bits (228), Expect = 4e-23
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG E+A +L G V +E T ++ +A DV
Sbjct: 27 VTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVP 84
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
++ A + E G VD+L+NNAG + + V+ NL F
Sbjct: 85 EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVF 135
Score = 49.6 bits (119), Expect = 9e-08
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLP--DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKF 67
++E + + N+ F + + L M+E+ G IV I+S G G+ + PY ASK
Sbjct: 119 ADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKH 178
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCV 94
V G + L ++LA G TV V
Sbjct: 179 GV----VGFTKALGLELARTGITVNAV 201
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 91.6 bits (228), Expect = 5e-23
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 9 TSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 68
T+E E+R +F+++VF + LP M E+ G +V ISS G + Y A+K A
Sbjct: 98 TTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAA 157
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCV 94
+ + LA ++A G V+ V
Sbjct: 158 L----EQLSEGLADEVAPFGIKVLIV 179
Score = 73.5 bits (181), Expect = 3e-16
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 5/113 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA G GR +A G TV+ E +A +DVT +
Sbjct: 10 VTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPD-----RAEAISLDVTDGE 64
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
++ + G VD+L+NNAG ++ + +++ +
Sbjct: 65 RIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARL 117
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 92.1 bits (229), Expect = 7e-23
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
PL+ E+ + + DVNV +L+ FLPDM + G ++ S+ G++GLP YCA
Sbjct: 98 PLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCA 157
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SKFA+ G+ LA+ L G + +
Sbjct: 158 SKFAL----EGLCESLAVLLLPFGVHLSLI 183
Score = 61.3 bits (149), Expect = 8e-12
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 69 VTGAGHGIGRELAIQLA---DLGCTVVCVDLNQENNAKTADQINTTHNCKKAF-PFEMDV 124
+TG GIG LA++LA V + + + + + ++DV
Sbjct: 7 ITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDV 66
Query: 125 TFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
V A R+++ E G VD+L+ NAG+ P+ D + +V++VN+
Sbjct: 67 RDSKSVAAARERVTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNV 115
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 90.7 bits (226), Expect = 7e-23
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG+ GIG +A LA G +V A +I KA D++
Sbjct: 9 VTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGV--KAVHHPADLSDVA 64
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
Q+ A G VDIL+NNAGI P+ + +I +NL A F
Sbjct: 65 QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVF 115
Score = 63.8 bits (156), Expect = 6e-13
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P++ E KI +N+ + F LP M +N G I+ I+S+ G+VG Y A
Sbjct: 94 PVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVA 153
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K V G+ + + ++ A T +
Sbjct: 154 AKHGVV----GLTKVVGLETATSNVTCNAI 179
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 90.7 bits (226), Expect = 7e-23
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VT H G A++L++ G TV C D + + + T
Sbjct: 6 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQL--------KPMSEQ 57
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTP--QPILTAKPDDIVAVINVNLLAHFWV 181
+ + + G VD+L++N P QPI +D + + F +
Sbjct: 58 EPAELIEAVTSAYGQVDVLVSNDIF-APEFQPIDKYAVEDYRGAVEALQIRPFAL 111
Score = 63.0 bits (154), Expect = 1e-12
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P+ + E+ R + F ++ M ++ GHI+ I+S L Y +
Sbjct: 88 PIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTS 147
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
++ + L+ +L + V +
Sbjct: 148 ARAGA----CTLANALSKELGEYNIPVFAI 173
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 90.7 bits (226), Expect = 8e-23
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG L D VV + + +A D++ +
Sbjct: 33 ITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADP-----------DIHTVAGDISKPE 81
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
++ E G +D L+NNAG+ +P + +D + VN+ F
Sbjct: 82 TADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFF 132
Score = 61.8 bits (151), Expect = 3e-12
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV--PY 62
P ++E+ VNV F I + +M+++ GHIV I++ + +
Sbjct: 111 PFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALA 170
Query: 63 CASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K + + + R LA++ + G V V
Sbjct: 171 SLTKGGL----NAVTRSLAMEFSRSGVRVNAV 198
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 90.7 bits (226), Expect = 8e-23
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 13/113 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG + L G V D A D+
Sbjct: 33 VTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA-------------DLHLPGDLREAA 79
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ +G +DI++NNAG+++ I D + VN+ A F +
Sbjct: 80 YADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRI 132
Score = 78.4 bits (194), Expect = 3e-18
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ T++ + VNV + F I +P M G IV ++S G+ P YC
Sbjct: 109 RITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCL 168
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ + + + + A G + V
Sbjct: 169 TKAAL----ASLTQCMGMDHAPQGIRINAV 194
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 91.1 bits (227), Expect = 8e-23
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIGR A+ A G VV N A+ D+I +A DV
Sbjct: 13 VTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGG--EAAALAGDVGDEA 70
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNL 175
A + G +D NNAG + I + + ++ NL
Sbjct: 71 LHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNL 118
Score = 65.3 bits (160), Expect = 2e-13
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 2 PCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLV 60
+ + S E R+ D N+ S F + +P + G + SS G G +
Sbjct: 98 AMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVA 157
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
PY ASK + G+ + LA++L G V +
Sbjct: 158 PYAASKAGLI----GLVQALAVELGARGIRVNAL 187
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 90.7 bits (226), Expect = 1e-22
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG G GIG + + G VV D ++ ++ A DVT D
Sbjct: 14 VTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQED 67
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTP-QPILTAKPDDIVAVINVNLLAHFW 180
V + G +D ++NNAG P Q ++ +NLL +
Sbjct: 68 DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYT 120
Score = 81.1 bits (201), Expect = 4e-19
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 2 PCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 61
P + TS + R++ ++N+ + + + LP + K++G+++ ISS+ G +G VP
Sbjct: 95 PPQRPEETSAQGFRQLLELNLLGTYTLTKLALP-YLRKSQGNVINISSLVGAIGQAQAVP 153
Query: 62 YCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y A+K AVT + + LA+ + G V C+
Sbjct: 154 YVATKGAVT----AMTKALALDESPYGVRVNCI 182
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 89.1 bits (222), Expect = 2e-22
Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIG A+ + G V D MDV
Sbjct: 12 VTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY------------PFATEVMDVADAA 59
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
QV Q++ +D L+N AGI+ +D VN+ F +
Sbjct: 60 QVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNL 112
Score = 65.3 bits (160), Expect = 2e-13
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
S+E+ ++ F VNV F + + + + G IV ++S A + Y A
Sbjct: 89 ATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGA 148
Query: 65 SKFAVTGAGHGIGRELA 81
SK A+ +G ELA
Sbjct: 149 SKAALKSLALSVGLELA 165
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 89.5 bits (223), Expect = 2e-22
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG A + G V ++ +I A + D
Sbjct: 34 ITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG-----GGAVGIQADSANLA 88
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
++ +K+ G +D+L NAG + P+ + + N+
Sbjct: 89 ELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVL 139
Score = 72.6 bits (179), Expect = 6e-16
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
PL +EE+ FD NV + ++ LP + +V S AG G P Y A
Sbjct: 118 PLGEVTEEQYDDTFDRNVKGVLFTVQKALPLL--ARGSSVVLTGSTAGSTGTPAFSVYAA 175
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK A+ R + L D G + +
Sbjct: 176 SKAAL----RSFARNWILDLKDRGIRINTL 201
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 88.8 bits (221), Expect = 2e-22
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 69 VTGAGHGIGRELAIQLADLGC-------TVVCVDLNQENNAKTADQINTTHNCKKAFPFE 121
+TGAG GIGR +A++ A +V + K + +
Sbjct: 7 ITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA--LTDTIT 64
Query: 122 MDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
D++ V I E G +D L+NNAG+ + +D +N NL
Sbjct: 65 ADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNL 118
Score = 74.5 bits (184), Expect = 7e-17
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
L + +EE+ + N+ F++ + M ++ GHI I+S+A +
Sbjct: 97 GRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSS 156
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
YC SKF G+ + + + V
Sbjct: 157 IYCMSKFGQ----RGLVETMRLYARKCNVRITDV 186
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 89.1 bits (222), Expect = 3e-22
Identities = 40/112 (35%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
VTGA GIG +A +LA G TVV + A + A +I KA + DV+
Sbjct: 32 VTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKI--EAAGGKALTAQADVSDP 89
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V E G VD+L+NNAGIM I VI VNL F
Sbjct: 90 AAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTF 141
Score = 59.5 bits (145), Expect = 2e-11
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ T + ++ VN+ F L + G I+ +S+ + P+ Y A
Sbjct: 120 TIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG--GRIINMSTSQVGLLHPSYGIYAA 177
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K V + L+ +L TV V
Sbjct: 178 AKAGV----EAMTHVLSKELRGRDITVNAV 203
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 89.2 bits (222), Expect = 4e-22
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG+ +A L + G V + E A TA +++ D++
Sbjct: 34 VTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG---DCQAIPADLSSEA 90
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
Q + E +DIL+NNAG + + V+ +N+ + F
Sbjct: 91 GARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSC 143
Score = 63.4 bits (155), Expect = 1e-12
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLP----DMMEKNRGHIVGISSMAGIVGLPNL 59
L++ K+ +NV S F ++ LP +N ++ I S+AGI +
Sbjct: 119 AALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQ 178
Query: 60 VP-YCASKFAVTGAGHGIGRELAIQLADLGCTV 91
Y SK A+ H + R LA +L V
Sbjct: 179 AYAYGPSKAAL----HQLSRMLAKELVGEHINV 207
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 89.2 bits (222), Expect = 4e-22
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGAG GIGRE+A LA V+C+ Q++ D+I + ++ + DV+ ++
Sbjct: 49 VTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKE 106
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
++ KI VDIL+NNAGI L K D+ V+ NL + F
Sbjct: 107 EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLF 157
Score = 45.6 bits (109), Expect = 2e-06
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+E + N+ S F+I + M+ G I+ ISS+ G+ G Y +SK
Sbjct: 141 KNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSK--- 197
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G + LA +LA TV +
Sbjct: 198 --AGVIGFTKSLAKELASRNITVNAI 221
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 88.9 bits (221), Expect = 5e-22
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAK-TADQINTTHNCKKAFPFEMDVTFR 127
VTGA IGR +A++L G VV N A AD++N + A + D+T
Sbjct: 28 VTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERS-NTAVVCQADLTNS 86
Query: 128 DQVMATRQKIFETV----GAVDILINNAGIMTPQPILTAKPDDIV----------AVINV 173
+ + A+ ++I + G D+L+NNA P P++ +D +I
Sbjct: 87 NVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGT 146
Query: 174 NLLAHF 179
N +A F
Sbjct: 147 NAIAPF 152
Score = 52.6 bits (127), Expect = 7e-09
Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 19/118 (16%)
Query: 6 LKNTSEEEIRKIFDVNVFSHFWILETFLPDMME------KNRGHIVGISSMAGIVGLPNL 59
T E ++ ++ N + F + +F + IV +
Sbjct: 132 NGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAF 191
Query: 60 VPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV---------DLNQENNAKTADQI 108
Y K A+ G+ + A++LA G V V + +E K ++
Sbjct: 192 SLYNMGKHAL----VGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDKWRRKV 245
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 88.4 bits (220), Expect = 5e-22
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
V GAG IGR AI+ A G VV A +I + A + D+T
Sbjct: 13 VAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEI--EKLGRSALAIKADLTNA 70
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHFWV 181
+V A + G + L++ AG + + I V++VNL + F
Sbjct: 71 AEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLT 125
Score = 61.4 bits (150), Expect = 5e-12
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVG-LPNLVPYC 63
+ E ++ DVN+ S F +T LP M + G IV SS AG G P + Y
Sbjct: 102 TIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKG--GAIVTFSSQAGRDGGGPGALAYA 159
Query: 64 ASKFAVTGAGHGIGRELA 81
SK AV G+ +E+
Sbjct: 160 TSKGAVMTFTRGLAKEVG 177
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 88.1 bits (219), Expect = 6e-22
Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTF-R 127
A GIG + + +L + EN A+ DVT
Sbjct: 10 FVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPK-VNITFHTYDVTVPV 68
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ +KIF+ + VDILIN AGI+ I I +N
Sbjct: 69 AESKKLLKKIFDQLKTVDILINGAGIL--------DDHQIERTIAINFTGLV 112
Score = 67.7 bits (166), Expect = 3e-14
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 9 TSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGH---IVGISSMAGIVGLPNLVPYCAS 65
+ +I + +N L ++ G I I S+ G + + Y AS
Sbjct: 95 LDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSAS 154
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCV 94
K AV LA G T +
Sbjct: 155 KAAVV----SFTNSLAKLAPITGVTAYSI 179
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 87.9 bits (219), Expect = 8e-22
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG+ GIGR +A +LA G TV+ + E A++I + KA EM++ +
Sbjct: 12 VTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGV-KAHGVEMNLLSEE 70
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ ++I+ V +DIL+NNAGI + L D V+ VNL F
Sbjct: 71 SINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTF 121
Score = 44.8 bits (107), Expect = 3e-06
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
S + ++ VN+ F + + L M+++ G IV ISS+ G G V Y +K
Sbjct: 105 SLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTK--- 161
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G + LA +LA V V
Sbjct: 162 --AGLIGFTKSLAKELAPRNVLVNAV 185
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 87.7 bits (218), Expect = 8e-22
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDL--NQENNAKTADQINTTHNCKKAFPFEMDVTF 126
VTG GIG+ + L L V + ++ K ++ + F D+T
Sbjct: 7 VTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITE 61
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTP-QPILTAKPDDIVAVINVNLLAHF 179
+ + G +D L+ NAG++ P Q + + + ++N +
Sbjct: 62 DSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIV 115
Score = 77.3 bits (191), Expect = 6e-18
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 2 PCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 61
P + +K++D+N FS ++ LP ++K G++V +SS A + +
Sbjct: 91 PVQNVNEIDVNAWKKLYDINFFSIVSLVGIALP-ELKKTNGNVVFVSSDACNMYFSSWGA 149
Query: 62 YCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y +SK A+ + E + V
Sbjct: 150 YGSSKAALNHFAMTLANEER------QVKAIAV 176
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 88.0 bits (219), Expect = 8e-22
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQIN-----TTHNCKKAFPFEMD 123
VTGAG GIGR ++++LA G TV DL++ +T + F+ D
Sbjct: 12 VTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQAD 71
Query: 124 VTFRDQVMATRQKIFETVG-AVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
V+ +++ ++++ AGI + +L DD VI VNL
Sbjct: 72 VSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNL 124
Score = 44.1 bits (105), Expect = 6e-06
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFA 68
SE++ K+ VN+ F + + ++ G I+ ISS+ G VG Y ASK
Sbjct: 112 SEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAG 171
Query: 69 VTGAGHGIGRELA 81
V G REL
Sbjct: 172 VIGLTQTAARELG 184
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 88.4 bits (220), Expect = 8e-22
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG G+GR L + G V +D + E + A DV
Sbjct: 10 ITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG-----GNAVGVVGDVRSLQ 64
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIV-----AVINVNLLAHF 179
++ G +D LI NAGI L P+D + + +VN+ +
Sbjct: 65 DQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYI 120
Score = 67.6 bits (166), Expect = 4e-14
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 5 PLKNTSEEEI----RKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
L + E++I IF VNV + ++ LP + +RG +V S AG
Sbjct: 95 ALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLP-ALVSSRGSVVFTISNAGFYPNGGGP 153
Query: 61 PYCASKFAVTGAGHGIGRELAIQLAD 86
Y A+K AV G+ R++A +LA
Sbjct: 154 LYTATKHAV----VGLVRQMAFELAP 175
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 88.0 bits (219), Expect = 9e-22
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIGR +A++LA G V+ + + ++V
Sbjct: 33 VTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDAT 90
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V A + + GA+++L+NNAGI Q + K D+ AVI+ NL A F
Sbjct: 91 AVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVF 141
Score = 45.2 bits (108), Expect = 3e-06
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
++E + D N+ + F + L MM+ G IV I+S+ G G P V Y A+K
Sbjct: 125 KDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAK--- 181
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G+ R LA ++ G TV CV
Sbjct: 182 --AGVAGMTRALAREIGSRGITVNCV 205
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 87.7 bits (218), Expect = 9e-22
Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDV 124
F VTGA G+G + LA G TV+ +DL + A ++ DV
Sbjct: 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGA-----AVRFRNADV 62
Query: 125 TFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAK----PDDIVAVINVNLLAHF 179
T A + G V L+N AG + IL D + VNL+ F
Sbjct: 63 TNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Score = 45.7 bits (109), Expect = 2e-06
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMME------KNRGHIVGISSMAGIVGLPNLVPYC 63
+ + + VN+ F ++ M + RG IV +S+A G Y
Sbjct: 105 ALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYA 164
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK V RE LA G VV +
Sbjct: 165 ASKGGVAALTLPAARE----LARFGIRVVTI 191
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 88.0 bits (219), Expect = 1e-21
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAK-TADQINTTHNCKKAFPFEMDVTFR 127
VTG GIG +A LA G + + ++ + + D+
Sbjct: 34 VTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAEL--SGLGARVIFLRADLADL 91
Query: 128 DQVMATRQKIFETVGAVDILINNAGI--MTPQPILTAKPDDIVAVINVNL 175
AT + G +D L+NNAGI + L KP++ ++ VNL
Sbjct: 92 SSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNL 141
Score = 53.4 bits (129), Expect = 4e-09
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR---GHIVGISSMAGIVGLPNLVP 61
+ E I VN+ + + L M+ + I+ I+S++ ++ P +
Sbjct: 124 DFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLD 183
Query: 62 YCASKFAVTGAGHGIGRELA 81
YC SK + G+ LA
Sbjct: 184 YCMSKAGLAAFSQGLALRLA 203
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 87.2 bits (217), Expect = 1e-21
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG+ +A LA+ G V+ ++ +D + ++VT +
Sbjct: 14 VTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPE 68
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ A + I + G VDIL+NNAGI ++ K ++ ++ NL + F
Sbjct: 69 SIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIF 119
Score = 44.4 bits (106), Expect = 5e-06
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
EEE I + N+ S F + + L MM+K +G I+ + S+ G +G Y A+K
Sbjct: 103 KEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAK--- 159
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G + +A ++A G TV V
Sbjct: 160 --AGVIGFTKSMAREVASRGVTVNTV 183
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 87.7 bits (218), Expect = 1e-21
Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINT--THNCKKAFPFEMDVTF 126
VTGAG GIGRE+A++L GC V+ +N N+ ++A+++ N A + +V
Sbjct: 34 VTGAGRGIGREMAMELGRRGCKVI---VNYANSTESAEEVVAAIKKNGSDAACVKANVGV 90
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ ++ ++ + G +DI+ +N+G+++ + P++ V +N F+V
Sbjct: 91 VEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFV 145
Score = 58.8 bits (143), Expect = 5e-11
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYC 63
+K+ + EE ++F +N F++ + G ++ + S+ G +P Y
Sbjct: 122 HVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG--GRLILMGSITGQAKAVPKHAVYS 179
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK A+ R +AI +AD TV V
Sbjct: 180 GSKGAIE----TFARCMAIDMADKKITVNVV 206
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 86.4 bits (215), Expect = 2e-21
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG A L G V + +++ A ++ + A P DV
Sbjct: 10 ITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVREEG 63
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLL 176
+ E G + L+NNAG+ +P+ ++ V++ NL
Sbjct: 64 DWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLT 111
Score = 74.5 bits (184), Expect = 5e-17
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
P+ + EE R + D N+ F + +P ++ + G IV + S+AG
Sbjct: 89 GVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGA 148
Query: 61 PYCASKFAVTGAGHGIGRELA 81
Y ASKF + G +L
Sbjct: 149 AYNASKFGLLGLAGAAMLDLR 169
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 85.7 bits (213), Expect = 2e-21
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
++ + + ++ ++ + L + V + V +P Y A
Sbjct: 81 SVREAGRDLVEEMLAAHLLTAA----FVLKHARFQKGARAVFFGAYPRYVQVPGFAAYAA 136
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ +L G +V V
Sbjct: 137 AKGAL----EAYLEAARKELLREGVHLVLV 162
Score = 81.8 bits (203), Expect = 7e-20
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA G+G A L G ++ A+ A ++ A D+
Sbjct: 5 ITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREVG-------ARALPADLADEL 55
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLA 177
+ + + E G +D+L++ G + A D + ++ +LL
Sbjct: 56 EA----KALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLT 100
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 86.8 bits (216), Expect = 2e-21
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG +A +L G ++ Q A +I A +DVT R
Sbjct: 9 ITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG--TALAQVLDVTDRH 66
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLL 176
V A Q +T G +D+L+NNAG+M P+ K D+ +I+VN+
Sbjct: 67 SVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIK 114
Score = 70.7 bits (174), Expect = 2e-15
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
MP PL +E ++ DVN+ W + LP M + G I+ I S+ + +P
Sbjct: 92 MPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAA 151
Query: 61 PYCASKFAVT 70
YCA+KFAV
Sbjct: 152 VYCATKFAVR 161
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 86.9 bits (216), Expect = 2e-21
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINT--THNCKKAFPFEMDVTF 126
TGAG GIGR +AI+L G +VV +N +++K A+++ + + D++
Sbjct: 26 TTGAGRGIGRGIAIELGRRGASVV---VNYGSSSKAAEEVVAELKKLGAQGVAIQADISK 82
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+V+A K G +D +++N+G+ L + V N+N F+V
Sbjct: 83 PSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFV 137
Score = 58.8 bits (143), Expect = 5e-11
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGI-VGLPNLVPYC 63
++E K+F++N F++ + L G I+ SS+A + G+PN Y
Sbjct: 114 DELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIAAVMTGIPNHALYA 171
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK AV G R A+ G TV C+
Sbjct: 172 GSKAAVE----GFCRAFAVDCGAKGVTVNCI 198
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 86.5 bits (215), Expect = 3e-21
Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
+TG IG +A++L G VV + E A + ++N A + D++
Sbjct: 16 ITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAG-SAVLCKGDLSLS 74
Query: 128 DQVMATRQKIFETV----GAVDILINNAGIMTPQPILTA-----------KPDDIVAVIN 172
++ + I + G D+L+NNA P P+L + +
Sbjct: 75 SSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFG 134
Query: 173 VNLLAHFWV 181
N +A ++
Sbjct: 135 SNAVAPLFL 143
Score = 61.1 bits (149), Expect = 8e-12
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 9 TSEEEIRKIFDVNVFSHFWILETFLPDM-----MEKNRGHIVGISSMAGIVGLPNLVPYC 63
+ ++ ++F N + +++ F +V + + LP Y
Sbjct: 124 PIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYT 183
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ G+ R A++LA V V
Sbjct: 184 MAKHALG----GLTRAAALELAPRHIRVNAV 210
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 86.0 bits (214), Expect = 3e-21
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG E+A LA G TVV +Q + K + + KA ++++ +
Sbjct: 10 VTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIE 67
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ +I A+DIL+NNAGI ++ D+ +VIN NL + F
Sbjct: 68 SIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIF 118
Score = 45.2 bits (108), Expect = 2e-06
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
SE+E + + + N+ S F + + + MM+K G I+ I S+ G G P YCA+K
Sbjct: 102 SEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAK--- 158
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G + LA ++A TV V
Sbjct: 159 --AGVIGFSKSLAYEVASRNITVNVV 182
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 86.2 bits (214), Expect = 4e-21
Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 67 FAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTF 126
+TG G+G A +L G + V +DL A ++ DVT
Sbjct: 15 AVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN-----NCVFAPADVTS 69
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAK------PDDIVAVINVNLLAHF 179
V G VD+ +N AGI K +D V++VNL+ F
Sbjct: 70 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTF 128
Score = 47.6 bits (114), Expect = 4e-07
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEK------NRGHIVGISSMAGIVGLPNLVPYC 63
+ E+ +++ DVN+ F ++ +M + RG I+ +S+A G Y
Sbjct: 112 TLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYS 171
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK + G I R+ LA +G V+ +
Sbjct: 172 ASKGGIVGMTLPIARD----LAPIGIRVMTI 198
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 86.0 bits (214), Expect = 4e-21
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVV---CVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
+ G +G A A +V + + K D++ K ++ D++
Sbjct: 16 IAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLS 73
Query: 126 FRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
++V + G VDI IN G + +PI+ + A+ +N ++
Sbjct: 74 NEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFF 129
Score = 61.0 bits (149), Expect = 8e-12
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P+ TSE E + +N ++ ++ M GHI+ I++ Y
Sbjct: 106 PIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPN--GHIITIATSLLAAYTGFYSTYAG 163
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K V R + +L +V +
Sbjct: 164 NKAPVE----HYTRAASKELMKQQISVNAI 189
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 85.6 bits (213), Expect = 5e-21
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
VTG+ G+G+ +A +L ++G +V + TA++ + DV
Sbjct: 10 VTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGI--NVVVAKGDVKNP 67
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ V + + G +DIL+NNAGI +L D V+N NL + +
Sbjct: 68 EDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAY 119
Score = 45.5 bits (109), Expect = 2e-06
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
SE++ + + N+ S + + M+++ G I+ I+S+AGI+G Y ASK
Sbjct: 103 SEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASK--- 159
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G + +A + A G V
Sbjct: 160 --AGLIGFTKSIAKEFAAKGIYCNAV 183
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 86.1 bits (214), Expect = 5e-21
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINT--THNCKKAFPFEMDVTF 126
VTG+G GIG +A+ L LG VV +N N+ K A+++ + A + D+
Sbjct: 23 VTGSGRGIGAAVAVHLGRLGAKVV---VNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ 79
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+++ + G +DI ++N+G+++ + ++ V ++N F+V
Sbjct: 80 VPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFV 134
Score = 61.8 bits (151), Expect = 4e-12
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISS-MAGIVGLPNLVPYC 63
LK+ +EEE ++F +N F++ + E G IV SS + +P Y
Sbjct: 111 HLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG--GRIVLTSSNTSKDFSVPKHSLYS 168
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK AV R + D TV V
Sbjct: 169 GSKGAVD----SFVRIFSKDCGDKKITVNAV 195
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 85.3 bits (212), Expect = 7e-21
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
V G HG+G +L + G V+ N+ N A+ ++ + D+ +
Sbjct: 13 VIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----PRVHALRSDIADLN 67
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
++ +T+GA+D+L NAG+ +P VN F
Sbjct: 68 EIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAF 118
Score = 69.9 bits (172), Expect = 4e-15
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
P SE + F VN F+ ++ P + + G IV SS+A G P + Y A
Sbjct: 97 PFDQVSEASYDRQFAVNTKGAFFTVQRLTPLI--REGGSIVFTSSVADEGGHPGMSVYSA 154
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK A+ LA +L G V V
Sbjct: 155 SKAAL----VSFASVLAAELLPRGIRVNSV 180
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 85.7 bits (213), Expect = 8e-21
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
VTG GIG +A +LA G V +N A +I +A D
Sbjct: 36 VTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEI--EQAGGRAVAIRADNRDA 93
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ + ++ E +G +DIL+N+AGI P+ D V+ VN A F
Sbjct: 94 EAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVA 147
Score = 60.6 bits (148), Expect = 1e-11
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISS-MAGIVGLPNLVPYC 63
PL+ T+ + ++ VN + F + + + + G I+ I S +A +V P + Y
Sbjct: 124 PLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG--GRIITIGSNLAELVPWPGISLYS 181
Query: 64 ASKFAVTGAGHGIGRELA 81
ASK A+ G G+ R+L
Sbjct: 182 ASKAALAGLTKGLARDLG 199
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 84.9 bits (211), Expect = 1e-20
Identities = 18/111 (16%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA +G A++L + G V+ ++ + ++ A D +
Sbjct: 32 ITGASQRVGLHCALRLLEHGHRVI---ISYRTEHASVTELRQ----AGAVALYGDFSCET 84
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+MA + ++ +++NA + + D+ + +V++LA +
Sbjct: 85 GIMAFIDLLKTQTSSLRAVVHNASEWLAETPGE-EADNFTRMFSVHMLAPY 134
Score = 62.6 bits (153), Expect = 2e-12
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 9 TSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 68
+ ++F V++ + + I P + IV IS G + YCA+K
Sbjct: 117 EEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAG 176
Query: 69 VTGAGHGIGRELA 81
+ A
Sbjct: 177 LESLTLSFAARFA 189
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 85.1 bits (211), Expect = 1e-20
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 11/128 (8%)
Query: 64 ASKFA-VTGAGHGIGRELAIQLADL---GCTVVCVDLNQENNAKTADQINTTHNCKKAFP 119
+TGA G GR LA QLA L G ++ ++ + +++ K
Sbjct: 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64
Query: 120 FEMDVTFRDQVMATRQKIFETVGA----VDILINNAGIMTPQ---PILTAKPDDIVAVIN 172
D+ V + E +LINNA + + ++
Sbjct: 65 AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124
Query: 173 VNLLAHFW 180
+NL +
Sbjct: 125 LNLTSMLC 132
Score = 74.3 bits (183), Expect = 9e-17
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKN--RGHIVGISSMAGIVGLPN 58
+ L E+ + +N+ S + L + +V ISS+ +
Sbjct: 106 VSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKG 165
Query: 59 LVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVD 95
YCA K A + + LA + + V+
Sbjct: 166 WGLYCAGKAAR----DMLYQVLAAEEPSV--RVLSYA 196
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 84.7 bits (210), Expect = 1e-20
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
V G +G E+ + +D + NA + F + + +
Sbjct: 27 VLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHS--------------FTIKDSGEE 72
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTP-QPILTAKPDDIVAVINVNLLAHFWV 181
++ + +KI VD + AG + + +I++NL + F
Sbjct: 73 EIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFAS 126
Score = 70.8 bits (174), Expect = 2e-15
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ + ++ + D+N++S F + G V + A + ++ Y A
Sbjct: 103 ASSDEFLKSVKGMIDMNLYSAFASAHIGAKLL--NQGGLFVLTGASAALNRTSGMIAYGA 160
Query: 65 SKFAVTGAGHGIGRELAIQLADL--GCTVVCV 94
+K A H I ++LA + L G T + +
Sbjct: 161 TKAAT----HHIIKDLASENGGLPAGSTSLGI 188
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 84.1 bits (209), Expect = 2e-20
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG A LA G V E D++ K E+DV R
Sbjct: 12 ITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA--KVHVLELDVADRQ 69
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLL 176
V A E +G +DIL+NNAGIM P+ A D +I+ NLL
Sbjct: 70 GVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLL 117
Score = 63.7 bits (156), Expect = 8e-13
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
M P+++ + ++ D N+ ++ LP ++ +++G +V +SS+AG V + N
Sbjct: 95 MLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLL-RSKGTVVQMSSIAGRVNVRNAA 153
Query: 61 PYCASKFAVTGAGHGIGRELA 81
Y A+KF V + +E+
Sbjct: 154 VYQATKFGVNAFSETLRQEVT 174
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 84.5 bits (210), Expect = 2e-20
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG GIG A G VV D+ ++ K + I + DVT +
Sbjct: 21 ITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDE 77
Query: 129 QVMATRQKIFETVGAVDILINNAGIM--TPQPILTAKPDDIVAVINVNLLAHFW 180
V G +DI+ N G++ TP IL A +D V+++N+ F
Sbjct: 78 DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 131
Score = 68.3 bits (168), Expect = 2e-14
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 3 CHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNL-VP 61
+ + E+ +++ D+NV+ F + + M+ +G IV +S++ +
Sbjct: 107 PYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHV 166
Query: 62 YCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y A+K AV G+ L +L + G V CV
Sbjct: 167 YTATKHAVL----GLTTSLCTELGEYGIRVNCV 195
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 84.1 bits (209), Expect = 2e-20
Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
VTGA GIGR +AI LA G VV E A + D+I A DV
Sbjct: 9 VTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANA 66
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ V ++ + G VDIL+NNAG+ ++ K ++ VIN NL F
Sbjct: 67 EDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVF 118
Score = 44.8 bits (107), Expect = 3e-06
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
EEE + + N+ F + MM + G IV I+S+ G+ G P Y A+K
Sbjct: 102 KEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAK--- 158
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G+ + A +LA TV +
Sbjct: 159 --AGVIGLTKTSAKELASRNITVNAI 182
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 83.7 bits (208), Expect = 2e-20
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 11/116 (9%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VT A H G L G TVVC D + + A+ +
Sbjct: 6 VTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT--------IALAEQ 57
Query: 129 QVMATRQKIFETVGAVDILINNAGI---MTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ + A+D +++N I M P+ DI + + +
Sbjct: 58 KPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILL 113
Score = 75.6 bits (187), Expect = 3e-17
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
PL+ TSE +IR++F+ +L++ + + ++ I+S G L Y
Sbjct: 90 PLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGP 149
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
++ A + A L+ G + +
Sbjct: 150 ARAAT----VALVESAAKTLSRDGILLYAI 175
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 83.7 bits (208), Expect = 3e-20
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 65 SKFA-VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEM 122
S VTGA GIG+ +A+ L GC V+ A + + QI +A F
Sbjct: 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG--QAITFGG 58
Query: 123 DVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
DV+ V A + + G +D+++NNAGI ++ K VI++NL F
Sbjct: 59 DVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVF 115
Score = 44.4 bits (106), Expect = 4e-06
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+ + ++ D+N+ F + MM+K +G I+ I+S+ G++G Y A+K
Sbjct: 99 KKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAK--- 155
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G + A + A V V
Sbjct: 156 --AGVIGFSKTAAREGASRNINVNVV 179
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 84.1 bits (209), Expect = 3e-20
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG +A G V ++ + A + K F F +++ R
Sbjct: 32 VTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRK 86
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ + + +DIL+NNAGI + + D V+ VNL A
Sbjct: 87 SIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAAS 137
Score = 45.6 bits (109), Expect = 2e-06
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+++ + VN+ + + + MM + G I+ I+S+ G+VG P YCA+K
Sbjct: 121 QDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAK--- 177
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G + LA ++A TV C+
Sbjct: 178 --AGLIGFSKALAQEIASRNITVNCI 201
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 83.4 bits (207), Expect = 3e-20
Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 17/112 (15%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
V A GIGR +A L+ G V N+E ++ + D+
Sbjct: 24 VLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVC-----------DLR--- 69
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+FE V VDIL+ NAG +D I+ L
Sbjct: 70 ---KDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIK 118
Score = 66.0 bits (162), Expect = 1e-13
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ E+ ++ D + I+ +LP M EK G IV I+S + I + NL +
Sbjct: 96 FFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNS 155
Query: 65 SKFAVTGAGHGIGRELA 81
++ A+TG + E+A
Sbjct: 156 ARMALTGFLKTLSFEVA 172
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 83.8 bits (208), Expect = 4e-20
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+T G+G+++ +L G +V + +T + + + DVT ++
Sbjct: 12 ITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEE-RLQFVQADVTKKE 70
Query: 129 QVMATRQKIFETVGAVDILINNAG--IMTPQPILTAKPDDIVAVINVNLLAHF 179
+ ++ G +D LINNAG + + ++ + D+ +I NL A F
Sbjct: 71 DLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVF 123
Score = 43.7 bits (104), Expect = 9e-06
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGIS--SMAGIVGLPNLVPYCASKF 67
E+E ++ N+ + F +L+ +P M ++N G I+ G + A+K
Sbjct: 107 EEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAK- 165
Query: 68 AVTGAG-HGIGRELAIQLADLGCTVVCV 94
G + + +A + A+ G T V
Sbjct: 166 ----VGLVSLTKTVAYEEAEYGITANMV 189
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 83.0 bits (206), Expect = 4e-20
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA G G + + G V+ QE + D++ + ++DV R
Sbjct: 5 VTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRA 59
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLA 177
+ + +DIL+NNAG+ P A +D +I+ N
Sbjct: 60 AIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKG 109
Score = 68.3 bits (168), Expect = 2e-14
Identities = 22/81 (27%), Positives = 33/81 (40%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
+ P S E+ + D N ++ LP M+E+N GHI+ I S AG
Sbjct: 86 LGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGN 145
Query: 61 PYCASKFAVTGAGHGIGRELA 81
Y A+K V + +L
Sbjct: 146 VYGATKAFVRQFSLNLRTDLH 166
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 83.4 bits (207), Expect = 6e-20
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDL-------------NQENNAKTADQINTTHNCK 115
+TGA G GR A+++A G ++ VD+ + ++ ++T + + +
Sbjct: 16 ITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--R 73
Query: 116 KAFPFEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+ +D D++ +G +DI++ NAG+ PQ P+D V+++N+
Sbjct: 74 RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINV 133
Score = 71.0 bits (175), Expect = 2e-15
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
+ + E+ R + D+NV + + P ++E R G I+ ISS AG+ P ++ Y
Sbjct: 116 AWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYT 175
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTV--VC 93
ASK AVT G+ R A +L V V
Sbjct: 176 ASKHAVT----GLARAFAAELGKHSIRVNSVH 203
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 83.3 bits (207), Expect = 6e-20
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDL------------NQENNAKTADQINTTHNCKK 116
+TG G+GR A+ LA+ G + D ++ A+T + T ++
Sbjct: 15 ITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RR 72
Query: 117 AFPFEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
++DV R + + + +T+G +DI I NAGI T + + VI NL
Sbjct: 73 CISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNL 131
Score = 61.4 bits (150), Expect = 7e-12
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+ ++ N+ F + P M+++N G IV +SSM G Y +SK+ V
Sbjct: 119 ESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGV 178
Query: 70 TGAGHGIGRELAIQLADLGCTVVCV 94
G+ + A L G TV V
Sbjct: 179 I----GLTKCAAHDLVGYGITVNAV 199
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 83.0 bits (206), Expect = 6e-20
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA G G A + A+ G ++V +E A +++ + P +DV R
Sbjct: 26 ITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRA 82
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLA 177
+ A + E + LINNAG+ P + DD +++ N+
Sbjct: 83 AMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKG 132
Score = 63.8 bits (156), Expect = 8e-13
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYC 63
P ++ ++ + D N+ + LP ++ G IV + S+AG P Y
Sbjct: 113 PAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYG 172
Query: 64 ASKFAVTGAGHGIGRELA 81
+K V + +L
Sbjct: 173 GTKAFVEQFSLNLRCDLQ 190
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 84.0 bits (208), Expect = 6e-20
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGL-PNLVPYC 63
P + + E+ +++D+NV S + LP M + G ++ ISS + G P L PY
Sbjct: 102 PAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYF 161
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
A+K A+ I + A +L+ G +
Sbjct: 162 AAKAAMD----AIAVQYARELSRWGIETSII 188
Score = 77.9 bits (192), Expect = 1e-17
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVC----VDLNQENNAKTADQINTTHNCKKAFPFEMDV 124
+TGA G GR A LA G V + +N + ++ E+DV
Sbjct: 10 ITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDND-VDLRTLELDV 68
Query: 125 TFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ V +I G +D+LI+NAG M P P+ + ++N+L+ V
Sbjct: 69 QSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRV 125
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 83.8 bits (208), Expect = 7e-20
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDL------------NQENNAKTADQINTTHNCKK 116
+TGA G GR A++LA G +V +DL + E +T + ++
Sbjct: 51 ITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RR 108
Query: 117 AFPFEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+ DV + A + G +DIL++N GI +++ ++ NL
Sbjct: 109 IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNL 167
Score = 60.7 bits (148), Expect = 1e-11
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
+ + ++++ I N+ + LP M+E+ + G ++ +SS G+ G P Y
Sbjct: 150 EVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYA 209
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK V G+ LA ++ V V
Sbjct: 210 ASKHGVQ----GLMLSLANEVGRHNIRVNSV 236
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 83.0 bits (206), Expect = 8e-20
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG G+G ++ +L D G V + ++ T + +DV +
Sbjct: 30 VTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRD-FKAYAVDVADFE 88
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+K+ G VD+LINNAGI + D AV+ +L A F
Sbjct: 89 SCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMF 139
Score = 47.6 bits (114), Expect = 4e-07
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
++ + + ++ + F + + F+ M+E+ G IV I S+ G G Y ++K
Sbjct: 123 TKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAK--- 179
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG HG + LA++ A G TV V
Sbjct: 180 --AGIHGFTKTLALETAKRGITVNTV 203
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 82.6 bits (205), Expect = 8e-20
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVV-CVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFR 127
VTG GIG + +L G VV N K + + E +V
Sbjct: 18 VTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDW 75
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
D K+ VG +D+L+NNAGI +D AVI+ NL + F
Sbjct: 76 DSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLF 127
Score = 49.1 bits (118), Expect = 1e-07
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+ E+ + + D N+ S F + + + M+E+ G I+ ISS+ G G Y +K
Sbjct: 111 TREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAK--- 167
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG HG LA ++A G TV V
Sbjct: 168 --AGIHGFTMSLAQEVATKGVTVNTV 191
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 82.6 bits (205), Expect = 9e-20
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCK----KAFPFEMDV 124
VTG GIG + A G V +N N + AD +A DV
Sbjct: 31 VTGGSRGIGAAVCRLAARQGWRVG---VNYAANREAADA--VVAAITESGGEAVAIPGDV 85
Query: 125 TFRDQVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLAHF 179
+ A + G +D L+NNAGI+ + + I ++ VN+
Sbjct: 86 GNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSI 141
Score = 59.9 bits (146), Expect = 2e-11
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR---GHIVGISSMAGIVGLPN-LV 60
+ S E I ++ VNV + M G IV +SSMA I+G V
Sbjct: 120 RVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYV 179
Query: 61 PYCASKFAVTGAGHGIGRELA 81
Y ASK A+ G+ RE+A
Sbjct: 180 DYAASKAAIDTFTIGLAREVA 200
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 82.2 bits (204), Expect = 9e-20
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA G+G E+ L+ + + + + P E D+
Sbjct: 10 VTGATGGMGIEIVKDLSRDHIVYAL--------GRNPEHLAALAEIEGVEPIESDIVKEV 61
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLA 177
K+ + + VD L++ A + I + A +++N++
Sbjct: 62 LEEGGVDKL-KNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIV 109
Score = 75.7 bits (187), Expect = 2e-17
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
++ S E D+NV + LP + G ++ I+S AG P
Sbjct: 86 ARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLP-ALRAASGCVIYINSGAGNGPHPGNT 144
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y ASK A+ G+ + A+ G V V
Sbjct: 145 IYAASKHAL----RGLADAFRKEEANNGIRVSTV 174
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 82.6 bits (205), Expect = 9e-20
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
VTGA GIGR +A++LA G V + A + I +AF + DV+
Sbjct: 33 VTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG--EAFAVKADVSQE 90
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+V A + E G +D+L+NNAGI +L K DD +V+++NL F
Sbjct: 91 SEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVF 142
Score = 45.2 bits (108), Expect = 2e-06
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
++ + + D+N+ F M+++ G I+ I+S+ G +G P Y A+K
Sbjct: 126 KRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAK--- 182
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G+ + +A +LA G TV V
Sbjct: 183 --AGVIGLTKTVAKELASRGITVNAV 206
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 82.1 bits (204), Expect = 1e-19
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA-KTADQINTTHNCKKAFPFEMDVTFR 127
VTGA GIGR +A+QLA+ G V + A ++I +F + +V
Sbjct: 9 VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA--KGVDSFAIQANVADA 66
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
D+V A +++ G++D+L+NNAGI ++ K + VI+ NL F
Sbjct: 67 DEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVF 118
Score = 45.2 bits (108), Expect = 3e-06
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
E+E + D N+ F ++ P M+ + G I+ +SS+ G VG P Y A+K
Sbjct: 102 KEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATK--- 158
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G+ + A +LA G TV V
Sbjct: 159 --AGVIGLTKSAARELASRGITVNAV 182
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 81.8 bits (203), Expect = 1e-19
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVC-VDLNQENNAKTADQINTTHNCKKAFPFEMDVTFR 127
VTG GIG+ + L V +D+ Q +A+ I D+T +
Sbjct: 9 VTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKA------------DLTKQ 56
Query: 128 DQVMATRQKIFETV--GAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+ + + + + D + NAGI+ I + I V+++N+
Sbjct: 57 QDI----TNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNV 102
Score = 76.4 bits (189), Expect = 1e-17
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+ + E I+K+ D+NV+S + ++ ++ K IV S + PN Y
Sbjct: 85 SIFDIDIESIKKVLDLNVWSSIYFIKGLENNL--KVGASIVFNGSDQCFIAKPNSFAYTL 142
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK A+ + + LA+ LA V V
Sbjct: 143 SKGAI----AQMTKSLALDLAKYQIRVNTV 168
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 81.8 bits (203), Expect = 1e-19
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVV-CVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFR 127
+TGA GIGR +A++LA+ G + N+E + A++ ++
Sbjct: 6 ITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEA-RRRGSPLVAVLGANLLEA 64
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ A + E +G +D L+NNAGI ++ K +D AV+ NL A F
Sbjct: 65 EAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVF 116
Score = 44.4 bits (106), Expect = 5e-06
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+E+ + + N+ + F + MM+ G IV I+S+ GI+G P Y ASK
Sbjct: 100 KDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASK--- 156
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G R +A + A G TV V
Sbjct: 157 --AGLIGFTRAVAKEYAQRGITVNAV 180
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 82.2 bits (204), Expect = 2e-19
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDL-------------NQENNAKTADQINTTHNCK 115
+TGA G GR A++LA G ++ D+ + E+ +TA + +
Sbjct: 20 ITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--R 77
Query: 116 KAFPFEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
KA +DV + E G +D+++ NAG+++ + + VI VNL
Sbjct: 78 KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNL 137
Score = 64.1 bits (157), Expect = 7e-13
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
+ ++E+ + VN+ + L +P M+E G IV +SS AG+ P Y
Sbjct: 120 RVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYS 179
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK +T + LAI+L + G V +
Sbjct: 180 ASKHGLT----ALTNTLAIELGEYGIRVNSI 206
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 81.8 bits (203), Expect = 2e-19
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG +A L LG V+ N+E + + ++ ++
Sbjct: 19 ITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKE 73
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ + +DIL+ NAGI + + K D VI++NL A+F
Sbjct: 74 EC----SNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANF 120
Score = 46.0 bits (110), Expect = 1e-06
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+++ K+ D+N+ ++F + + M++K G I+ ISS+ GI G P YCASK
Sbjct: 104 KDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASK--- 160
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G+ + L+ ++A G TV V
Sbjct: 161 --AGLIGMTKSLSYEVATRGITVNAV 184
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 82.0 bits (203), Expect = 2e-19
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 69 VTGAGHGIGRELAIQLADLG---CTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
+TGA GIG+ A++ + ++ E + I+ K ++D+T
Sbjct: 38 ITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDIT 97
Query: 126 FRDQVMATRQKIFETVGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNLLA 177
+++ + + + +DIL+NNAG + +DI V + N+ A
Sbjct: 98 QAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTA 150
Score = 70.0 bits (172), Expect = 5e-15
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
+ + + E+I+ +FD NV + I + LP KN G IV + S+AG P
Sbjct: 127 LGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGS 186
Query: 61 PYCASKFAVTGAGHGIGRELA 81
YCASKFAV + +EL
Sbjct: 187 IYCASKFAVGAFTDSLRKELI 207
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 81.6 bits (202), Expect = 2e-19
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 67 FAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTF 126
V+G G+G +L G VV DL E AD++ +A +VT
Sbjct: 33 AIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG-----NRAEFVSTNVTS 87
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQPILT-----AKPDDIVAVINVNLLAHF 179
D V+A + + ++ + G Q I+ A I++ L +
Sbjct: 88 EDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTY 145
Score = 48.8 bits (117), Expect = 2e-07
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEK------NRGHIVGISSMAGIVGLPNLVPYC 63
K D+ + + + + RG +V +S+AG G Y
Sbjct: 129 DMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYA 188
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
A+K V G R+ L+ G V +
Sbjct: 189 AAKAGVIGLTIAAARD----LSSAGIRVNTI 215
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 80.3 bits (199), Expect = 4e-19
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA G+G ELA G ++ + + ++ + D+
Sbjct: 6 ITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRAR-----DLASHQ 60
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLA 177
+V +++ ++++AG + P+ I +I NL +
Sbjct: 61 EVEQLFEQLD---SIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSS 106
Score = 69.5 bits (171), Expect = 4e-15
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
L+ E+I+ + + N+ S +L + ++ ++V I S A
Sbjct: 83 GYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP-VNVVMIMSTAAQQPKAQES 141
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
YCA K+AV G+ + ++L ++ V
Sbjct: 142 TYCAVKWAV----KGLIESVRLELKGKPMKIIAV 171
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 79.1 bits (196), Expect = 1e-18
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG +A +LA G V F E+DVT D
Sbjct: 20 VTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-------------LFGVEVDVTDSD 66
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V + E G V++L++NAG+ ++ + VIN NL F
Sbjct: 67 AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF 117
Score = 47.2 bits (113), Expect = 6e-07
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
+EE+ K+ + N+ F + + M G ++ I S++G+ G+ N Y ASK
Sbjct: 101 TEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASK--- 157
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G+ R +A +L+ T V
Sbjct: 158 --AGVIGMARSIARELSKANVTANVV 181
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 79.6 bits (197), Expect = 2e-18
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 25/156 (16%)
Query: 34 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA-VTGAGHGIGRELAIQLADLGCTVV 92
M G SMAG V K A +TGA G GR AI LA G ++
Sbjct: 6 HHHMGTLEAQTQGPGSMAGKV---------EGKVAFITGAARGQGRSHAITLAREGADII 56
Query: 93 CVDL------------NQENNAKTADQINTTHNCKKAFPFEMDVTFRDQVMATRQKIFET 140
+D+ ++ A+T Q+ ++ ++DV D + A
Sbjct: 57 AIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDAMQAAVDDGVTQ 114
Query: 141 VGAVDILINNAGIMTPQ-PILTAKPDDIVAVINVNL 175
+G +DI++ NA + + + P +I+VNL
Sbjct: 115 LGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNL 150
Score = 66.1 bits (162), Expect = 2e-13
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
L + R + DVN+ + +P +M R G IV SS+ G+ G N+ Y
Sbjct: 133 RLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYI 192
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK + G+ R +A++L V V
Sbjct: 193 ASKHGLH----GLMRTMALELGPRNIRVNIV 219
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 78.8 bits (195), Expect = 2e-18
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA GIG +A + ++ G ++ + E ++DVT +
Sbjct: 21 ITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP--------NTLCAQVDVTDKY 72
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLL 176
+ + G D ++NNAG+M I T + ++ + +VN+L
Sbjct: 73 TFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVL 120
Score = 69.5 bits (171), Expect = 7e-15
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
M + E +++FDVNV ++ L M +N G I+ ISS+AG P+
Sbjct: 98 MLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHA 157
Query: 61 PYCASKFAVTGAGHGIGRELA 81
YC +KFAV + E+A
Sbjct: 158 AYCGTKFAVHAISENVREEVA 178
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 78.4 bits (194), Expect = 3e-18
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG +A AD G V + E + D+T +
Sbjct: 26 VTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG-------------FLAVKCDITDTE 72
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
QV ++I ET G V++LI NAG+ Q ++ +D +V+ NL F
Sbjct: 73 QVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTF 123
Score = 46.8 bits (112), Expect = 7e-07
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
SEE+ + + N+ F +++ M+ +G +V ISS+ G++G Y ASK
Sbjct: 107 SEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASK--- 163
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G R LA +L T V
Sbjct: 164 --AGLVGFARSLARELGSRNITFNVV 187
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 79.6 bits (197), Expect = 4e-18
Identities = 40/120 (33%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTGA GIG +A A G TVV +D++ A+ + + +DVT D
Sbjct: 218 VTGAARGIGATIAEVFARDGATVVAIDVDGA-----AEDLKRVADKVGGTALTLDVTADD 272
Query: 129 QVMATRQKIFETVGA-VDILINNAGI--------MTPQPILTAKPDDIVAVINVNLLAHF 179
V + E G VDIL+NNAGI M AVI VNLLA
Sbjct: 273 AVDKITAHVTEHHGGKVDILVNNAGITRDKLLANM--------DEKRWDAVIAVNLLAPQ 324
Score = 51.1 bits (123), Expect = 4e-08
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
E+ + VN+ + + E + + G ++G+SSMAGI G Y +K
Sbjct: 308 DEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTK--- 364
Query: 70 TGAG-HGIGRELAIQLADLGCTVVCV 94
AG G+ LA LAD G T+ V
Sbjct: 365 --AGMIGLAEALAPVLADKGITINAV 388
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 77.6 bits (192), Expect = 6e-18
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQI--NTTHNCKKAFPFEMDVTF 126
VTGA GIGR +A +LA+ G V ++ N + A++ N AF ++
Sbjct: 12 VTGASRGIGRAIAKRLANDGALVA---IHYGNRKEEAEETVYEIQSNGGSAFSIGANLES 68
Query: 127 RDQV---MATRQKIFETV---GAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
V ++ + DILINNAGI I +++VN A F+
Sbjct: 69 LHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFF 128
Query: 181 V 181
+
Sbjct: 129 I 129
Score = 60.6 bits (148), Expect = 9e-12
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
++ T+E+ ++ VN + F+I++ L + + I+ ISS A + LP+ + Y
Sbjct: 106 FIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN--SRIINISSAATRISLPDFIAYSM 163
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ + LA QL G TV +
Sbjct: 164 TKGAIN----TMTFTLAKQLGARGITVNAI 189
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 77.6 bits (192), Expect = 7e-18
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQ----------------ENNAKTADQINTTH 112
VTGA G GR A++LA G ++ VD+ + E+ A+TAD + +
Sbjct: 16 VTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN 75
Query: 113 NCKKAFPFEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTP-QPILTAKPDDIVAVI 171
++ E+DV D + A E +G +DI++ NAGI + +D +I
Sbjct: 76 --RRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMI 133
Query: 172 NVNL 175
++NL
Sbjct: 134 DINL 137
Score = 66.8 bits (164), Expect = 7e-14
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYC 63
L TSEE+ ++ D+N+ + ++ +P M+ R G I+ SS+ G+ P+ Y
Sbjct: 120 TLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYV 179
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTV--VC 93
A+K V G+ R ++L V V
Sbjct: 180 AAKHGVV----GLMRAFGVELGQHMIRVNSVH 207
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 78.2 bits (193), Expect = 8e-18
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCK--------KAFPF 120
VTGAG GIGR A+ A G VV D+ + A + + +A
Sbjct: 32 VTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVAD 91
Query: 121 EMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFW 180
+V DQ Q ET G +D+L+NNAGI+ + I ++ AVI V+L HF
Sbjct: 92 GSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFA 151
Query: 181 V 181
Sbjct: 152 T 152
Score = 43.5 bits (103), Expect = 1e-05
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 6 LKNTSEEEIRKIFDVNVFSHF------WILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 59
+ NTSEEE + V++ HF L + G I+ SS AG+ G
Sbjct: 130 IANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQ 189
Query: 60 VPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y A+K + + A ++ G TV +
Sbjct: 190 GNYSAAKAGIA----TLTLVGAAEMGRYGVTVNAI 220
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 77.2 bits (191), Expect = 1e-17
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQ------------ENNAKTADQINTTHNCKK 116
+TGA G GR A++LA G ++ VDL E A T + +
Sbjct: 18 ITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SR 75
Query: 117 AFPFEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
+ DV R+ + A Q + +G +DI++ NAGI ++A D VI+VNL
Sbjct: 76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP----MSAGDDGWHDVIDVNL 130
Score = 56.0 bits (136), Expect = 4e-10
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 9 TSEEEIRKIFDVNVFSHFWILETFLPDMMEKNR-GHIVGISSMAGIVGL----PNLVPYC 63
++ + DVN+ + ++ +P ++++ G IV ISS AG+ G+ P V Y
Sbjct: 117 AGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYV 176
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
A+K V G+ R A LA V +
Sbjct: 177 AAKHGVV----GLMRVYANLLAGQMIRVNSI 203
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 77.3 bits (191), Expect = 1e-17
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 16/119 (13%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQ------------ENNAKTADQINTTHNCKK 116
VTG G GR A++LA+ G ++ D+ + + ++ T +K
Sbjct: 15 VTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RK 72
Query: 117 AFPFEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNL 175
A+ E+DV R V G +D+++ NAGI L +V+
Sbjct: 73 AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLP--VQAFADAFDVDF 129
Score = 60.7 bits (148), Expect = 1e-11
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 17/103 (16%)
Query: 3 CHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGL------ 56
C + + FDV+ + LP + I+ S+AG++
Sbjct: 110 CPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTS--GASIITTGSVAGLIAAAQPPGA 167
Query: 57 -----PNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
P Y +K V +LA QLA +
Sbjct: 168 GGPQGPGGAGYSYAKQLVD----SYTLQLAAQLAPQSIRANVI 206
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 76.1 bits (188), Expect = 2e-17
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 67 FAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTF 126
VTG G+G +L D G VV +D+ E + +A DVT
Sbjct: 12 AVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE---DVVADLGD-----RARFAAADVTD 63
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQPILT----AKPDDIVAVINVNLLAHF 179
V + ET+G + I++N AG +L+ ++++NL+ F
Sbjct: 64 EAAVASALDLA-ETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF 119
Score = 45.7 bits (109), Expect = 2e-06
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMME--------KNRGHIVGISSMAGIVGLPNLVP 61
S RKI D+N+ F +L + + + RG I+ +S+A G
Sbjct: 103 SLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAA 162
Query: 62 YCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y ASK V G I R+ LA V+ +
Sbjct: 163 YSASKGGVVGMTLPIARD----LASHRIRVMTI 191
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 76.0 bits (188), Expect = 3e-17
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAK-TADQINTTHNCKKAFPFEMDVTFR 127
+TG GIGR ++I A G + L++E +A T + K D++
Sbjct: 52 ITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDE 109
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQP-ILTAKPDDIVAVINVNLLAHFWV 181
Q+ +G+++IL+NN PQ + + + +N+ ++F V
Sbjct: 110 QHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHV 164
Score = 65.3 bits (160), Expect = 2e-13
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
P L+ + E++ K F +N+FS+F + + L + + I+ +S+ G L+
Sbjct: 137 YPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG--DVIINTASIVAYEGNETLI 194
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y A+K GA R L+ L G V V
Sbjct: 195 DYSATK----GAIVAFTRSLSQSLVQKGIRVNGV 224
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 76.2 bits (188), Expect = 3e-17
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENN---------AKTADQINTTHNCKKAFP 119
VTGAG G+GR A+ A+ G VV DL + K ++I KA
Sbjct: 14 VTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR--RGGKAVA 71
Query: 120 FEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V ++++ T F G +D+++NNAGI+ + +D + V+L F
Sbjct: 72 NYDSVEAGEKLVKTALDTF---GRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSF 128
Query: 180 WV 181
V
Sbjct: 129 QV 130
Score = 56.2 bits (136), Expect = 4e-10
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
S+E+ I V++ F + M ++N G I+ +S +GI G Y A
Sbjct: 107 SFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSA 166
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K + G+ L I+ +
Sbjct: 167 AKLGLL----GLANTLVIEGRKNNIHCNTI 192
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 76.7 bits (189), Expect = 5e-17
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENN---------AKTADQINTTHNCKKAFP 119
+TGAG G+G+ +++ A LG VV DL N D+I N A
Sbjct: 13 ITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI--VKNGGVAVA 70
Query: 120 FEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+V D+++ T K F G V ++INNAGI+ + D VI+V+L F
Sbjct: 71 DYNNVLDGDKIVETAVKNF---GTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAF 127
Query: 180 WV 181
V
Sbjct: 128 AV 129
Score = 73.6 bits (181), Expect = 6e-16
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 7/171 (4%)
Query: 12 EEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA-VT 70
+ +I D + L+ P M+ + K +T
Sbjct: 269 KRFSEILDYDDSRKPEYLKNQYPFMLNDYATLTNEARKLPANDASGAPTVSLKDKVVLIT 328
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRDQV 130
GAG G+G+E A A G VV D + KT D+I +A+P + DV
Sbjct: 329 GAGAGLGKEYAKWFAKYGAKVVVNDFK--DATKTVDEI--KAAGGEAWPDQHDVA--KDS 382
Query: 131 MATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
A + + + G +DIL+NNAGI+ + + +V V+L+ F +
Sbjct: 383 EAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNL 433
Score = 57.0 bits (138), Expect = 3e-10
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
S++E + V++ F + P +EK G I+ I+S +GI G Y +
Sbjct: 410 SFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSS 469
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
SK + G+ + +AI+ A V V
Sbjct: 470 SKAGIL----GLSKTMAIEGAKNNIKVNIV 495
Score = 56.6 bits (137), Expect = 5e-10
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
+K +E++ + + DV++ F + + P ++ G IV SS AG+ G Y +
Sbjct: 106 SMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYAS 165
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K A+ G LA + A +
Sbjct: 166 AKSALL----GFAETLAKEGAKYNIKANAI 191
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 74.7 bits (184), Expect = 6e-17
Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
+ + + ++ ++++ + K G + + A + G P ++
Sbjct: 88 AGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHL--KEGGLLTLAGAKAALDGTPGMI 145
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADL--GCTVVCV 94
Y +K AV H + + LA + + + G + V
Sbjct: 146 GYGMAKGAV----HQLCQSLAGKNSGMPSGAAAIAV 177
Score = 70.0 bits (172), Expect = 3e-15
Identities = 13/116 (11%), Positives = 33/116 (28%), Gaps = 15/116 (12%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
V G +G V +D+ + A + + +M +F +
Sbjct: 12 VYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIV------------KMTDSFTE 59
Query: 129 QVMATRQKIFETV--GAVDILINNAG-IMTPQPILTAKPDDIVAVINVNLLAHFWV 181
Q ++ + + VD ++ AG + + + ++
Sbjct: 60 QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTIS 115
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 74.3 bits (183), Expect = 1e-16
Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 3/114 (2%)
Query: 69 VTGAGHGIGRELAIQLADL-GCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFR 127
VTG GIG + L L VV + Q+ ++D+
Sbjct: 9 VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDL 66
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
+ A R + + G +D+L+NNAGI T + N V
Sbjct: 67 QSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDV 120
Score = 53.1 bits (128), Expect = 5e-09
Identities = 20/155 (12%), Positives = 37/155 (23%), Gaps = 50/155 (32%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
+ N F + LP + K +G +V +SS+ + L +
Sbjct: 93 AFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLI--KPQGRVVNVSSIMSVRALKSCS 150
Query: 61 P-----------------------------------------YCASKFAVTGAGHGIGRE 79
P Y +K VT R+
Sbjct: 151 PELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARK 210
Query: 80 LAIQLADLGCTVVCV-------DLNQENNAKTADQ 107
L+ Q + D+ K+ ++
Sbjct: 211 LSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEE 245
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 74.8 bits (184), Expect = 2e-16
Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 33/143 (23%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAK-TADQINTTHNCKKAFPFEMDVT-- 125
VTGA +GR +A L G V A + +N A + D++
Sbjct: 51 VTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNV 109
Query: 126 ---------------FRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDD---- 166
+ + G D+L+NNA P P+L D
Sbjct: 110 ATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPC 169
Query: 167 ----------IVAVINVNLLAHF 179
+ N +A +
Sbjct: 170 VGDREAMETATADLFGSNAIAPY 192
Score = 54.8 bits (132), Expect = 1e-09
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMME------KNRGHIVGISSMAGIVGLPN 58
+ E +F N + +++++ F + I+ + L
Sbjct: 171 GDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLG 230
Query: 59 LVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y +K A+ G+ R A++LA L V V
Sbjct: 231 YTIYTMAKGAL----EGLTRSAALELAPLQIRVNGV 262
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 73.5 bits (181), Expect = 2e-16
Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 15/116 (12%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
V G +G + G TV+ +DL+ + A + + + + + +
Sbjct: 8 VYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILV------------DGNKNWTE 55
Query: 129 QVMATRQKIFETV--GAVDILINNAGIMTPQPILTAKPDDIV-AVINVNLLAHFWV 181
Q + ++ ++ VD + AG + +I ++ +
Sbjct: 56 QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIA 111
Score = 71.6 bits (176), Expect = 7e-16
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
+ + +V+S + + K G + + A + P+++
Sbjct: 84 AGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHL--KPGGLLQLTGAAAAMGPTPSMI 141
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADL--GCTVVCV 94
Y +K AV H + LA + + L V+ +
Sbjct: 142 GYGMAKAAV----HHLTSSLAAKDSGLPDNSAVLTI 173
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 73.9 bits (182), Expect = 2e-16
Identities = 27/143 (18%), Positives = 41/143 (28%), Gaps = 33/143 (23%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAK-TADQINTTHNCKKAFPFEMDV--- 124
VTGA +GR +A L G V A + +N A + D+
Sbjct: 14 VTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNV 72
Query: 125 --------------TFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDD---- 166
T + + G D+L+NNA P P+L D
Sbjct: 73 ATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPC 132
Query: 167 ----------IVAVINVNLLAHF 179
+ N +A +
Sbjct: 133 VGDREAMETATADLFGSNAIAPY 155
Score = 55.1 bits (133), Expect = 1e-09
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 2 PCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMME------KNRGHIVGISSMAGIVG 55
PC + E +F N + +++++ F + I+ +
Sbjct: 131 PCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP 190
Query: 56 LPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
L Y +K A+ G+ R A++LA L V V
Sbjct: 191 LLGYTIYTMAKGAL----EGLTRSAALELAPLQIRVNGV 225
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 72.6 bits (179), Expect = 3e-16
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 19/117 (16%)
Query: 67 FAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTF 126
VTG G+GR A+ L G VV +DL +E + E DVT
Sbjct: 5 ALVTGGASGLGRAAALALKARGYRVVVLDLRREG--------------EDLIYVEGDVTR 50
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAK----PDDIVAVINVNLLAHF 179
+ V + E + +++ AG+ + IL + + V+ VNLL F
Sbjct: 51 EEDVRRAVARAQEE-APLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTF 106
Score = 46.8 bits (112), Expect = 7e-07
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMME------KNRGHIVGISSMAGIVGLPNLVPYC 63
E R++ +VN+ F +L M E RG IV +S+A G Y
Sbjct: 90 GLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYA 149
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
ASK V RE LA G VV V
Sbjct: 150 ASKGGVVALTLPAARE----LAGWGIRVVTV 176
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 73.0 bits (180), Expect = 5e-16
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 5/116 (4%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNA--KTADQINTTHNCKKAFPFEMDVTF 126
VTG GIGR AI A G V L E + I +KA D++
Sbjct: 54 VTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSD 111
Query: 127 RDQVMATRQKIFETVGAVDILINNAGIMTPQP-ILTAKPDDIVAVINVNLLAHFWV 181
+ K E +G +DIL AG T P I + VN+ A FW+
Sbjct: 112 ESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWI 167
Score = 72.6 bits (179), Expect = 5e-16
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 1 MPCHPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 60
+K+ + E+ ++ F VNVF+ FWI + +P + I+ SS+ P+L+
Sbjct: 140 TAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLL--PKGASIITTSSIQAYQPSPHLL 197
Query: 61 PYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
Y A+K A R LA Q+A+ G V V
Sbjct: 198 DYAATK----AAILNYSRGLAKQVAEKGIRVNIV 227
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 73.7 bits (181), Expect = 7e-16
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENN---------AKTADQINTTHNCKKAFP 119
VTGAG G+GRE A+ A+ G VV DL ++ D+I +A
Sbjct: 24 VTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG--EAVA 81
Query: 120 FEMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V +V+ T K F G VDIL+NNAGI+ + ++ D V +V+L F
Sbjct: 82 DYNSVIDGAKVIETAIKAF---GRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSF 138
Query: 180 WV 181
Sbjct: 139 KC 140
Score = 52.5 bits (126), Expect = 1e-08
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
L TSE++ + DV++ F + P M ++N G I+ SS +GI G V Y A
Sbjct: 117 SLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTA 176
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+K + G+ +AI+ A +
Sbjct: 177 AKMGLI----GLANTVAIEGARNNVLCNVI 202
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 69.6 bits (171), Expect = 2e-15
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 24/116 (20%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
K + GA +G + +L V+ + +D+T
Sbjct: 5 KILLIGASGTLGSAVKERLEK-KAEVITAGRHSG-------------------DVTVDIT 44
Query: 126 FRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
D + +K++E VG VD +++ G T P+ P+ I+ L +
Sbjct: 45 NIDSI----KKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINL 96
Score = 62.7 bits (153), Expect = 8e-13
Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 64
PL + E+ + ++ + + + +G + + +
Sbjct: 73 PLTELTPEKNAVTISSKLGGQINLVLLGIDSLND--KGSFTLTTGIMMEDPIVQGASAAM 130
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+ AV + AI++ G + V
Sbjct: 131 ANGAV----TAFAKSAAIEMPR-GIRINTV 155
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 69.3 bits (170), Expect = 6e-15
Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 14/120 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVV----CVDLNQENNAKTADQINTTHNCKKAFPFEMDV 124
VTGA GIG L QL D+ + K+ + V
Sbjct: 8 VTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSR-------VHVLPLTV 60
Query: 125 TFRDQVMATRQKIFETVG--AVDILINNAGIMTP-QPILTAKPDDIVAVINVNLLAHFWV 181
T + K+ E VG + +LINNAG++ I ++VN + +
Sbjct: 61 TCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLL 120
Score = 57.7 bits (140), Expect = 1e-10
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 29/131 (22%)
Query: 2 PCHPLKNTSEEEIRKIFDVNVFSHFWILETFLP-----------DMMEKNRGHIVGISSM 50
+ I + DVN S + + LP D + +R ++ ISS
Sbjct: 94 SYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSG 153
Query: 51 AGIVGLP-------NLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV-------DL 96
G + ++ Y SK A+ + GR LA+ L D VV +L
Sbjct: 154 LGSITDNTSGSAQFPVLAYRMSKAAI----NMFGRTLAVDLKDDNVLVVNFCPGWVQTNL 209
Query: 97 NQENNAKTADQ 107
+N A T +Q
Sbjct: 210 GGKNAALTVEQ 220
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 68.2 bits (167), Expect = 2e-14
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 9/119 (7%)
Query: 69 VTGAGHGIGRELAIQLADL---GCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
+TG G+G L L +L + N+E AK + + H E+D+
Sbjct: 26 ITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ-AKELEDLAKNH--SNIHILEIDLR 82
Query: 126 FRDQVMATRQKIFETVG--AVDILINNAGIMTP-QPILTAKPDDIVAVINVNLLAHFWV 181
D I +++L NNAGI I + +++ + N + +
Sbjct: 83 NFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 141
Score = 60.8 bits (148), Expect = 8e-12
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 25/125 (20%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLP-----------DMMEKNRGHIVGISSMAG 52
+ +E+ N + + LP M R I+ +SS+ G
Sbjct: 117 ARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 176
Query: 53 IVGL---PNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV-------DLNQENNA 102
+ + Y SK A+ + + L++ L V + D+ +
Sbjct: 177 SIQGNTDGGMYAYRTSKSAL----NAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSSAP 232
Query: 103 KTADQ 107
Sbjct: 233 LDVPT 237
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 67.7 bits (166), Expect = 3e-14
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 27/114 (23%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
++G GIG L G +V +D+ D++ +
Sbjct: 6 ISGCATGIGAATRKVLEAAGHQIVGIDIRDA-------------------EVIADLSTAE 46
Query: 129 QV-MATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHFWV 181
A + + +D L+ AG+ + V++VN +
Sbjct: 47 GRKQAIADVLAKCSKGMDGLVLCAGLGPQ-------TKVLGNVVSVNYFGATEL 93
Score = 51.9 bits (125), Expect = 1e-08
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 32/114 (28%)
Query: 9 TSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAG---------------- 52
+ + + VN F +++ FLP + + ++ V ISS+A
Sbjct: 74 PQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEA 133
Query: 53 ------------IVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+ Y SK A+T R+ A + G + +
Sbjct: 134 GEEAKARAIVEHAGEQGGNLAYAGSKNALT----VAVRKRAAAWGEAGVRLNTI 183
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 65.7 bits (160), Expect = 2e-13
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
VTG GIG E+ QL+ G VV + + +++ +++ + ++DVT
Sbjct: 17 VTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPI 75
Query: 129 QVMAT-RQKIFETVGAVDILINNAGIMTPQPILTA 162
M++ I G +DIL+NNAG+
Sbjct: 76 ATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADR 110
Score = 46.1 bits (109), Expect = 1e-06
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 52/151 (34%)
Query: 5 PLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIV---------- 54
L + + E + +N + E +P + + IV +SS G +
Sbjct: 136 ELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALE 195
Query: 55 --------------------------------GLPNLVP-YCASKFAVTGAGHGIGRELA 81
G P+ Y SK + R LA
Sbjct: 196 ILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLN----AYTRVLA 251
Query: 82 IQLADLGCTVVC---V--DLNQENNAKTADQ 107
++ VC V ++N TA++
Sbjct: 252 NKIPKFQVNCVCPGLVKTEMNYGIGNYTAEE 282
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 64.2 bits (157), Expect = 6e-13
Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TGA G+G A +LA G TV+ + A + + E+D+
Sbjct: 21 ITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA-----GQVEVRELDLQDLS 75
Query: 129 QVMATRQKIF-ETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
V F + V D+LINNAGIM LT D + I N L HF
Sbjct: 76 SVRR-----FADGVSGADVLINNAGIMAVPYALTV--DGFESQIGTNHLGHF 120
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 63.8 bits (156), Expect = 8e-13
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 2/115 (1%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
+TG+ GIG L LA G TV+ +D Q + A
Sbjct: 6 ITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDG 65
Query: 129 QVMATRQKIFETVGAVDILINNAGIM--TPQPILTAKPDDIVAVINVNLLAHFWV 181
V + + + +N G+ A + V +A
Sbjct: 66 LVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQP 120
Score = 60.3 bits (147), Expect = 1e-11
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 10 SEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 69
S + V + LP + G +A G + + Y SK+AV
Sbjct: 102 SRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQTH-LAYAGSKYAV 160
Query: 70 TGAGHGIGRELAIQLADLGCTVVCV 94
T + R + A G + V
Sbjct: 161 T----CLARRNVVDWAGRGVRLNVV 181
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 54.1 bits (130), Expect = 3e-09
Identities = 18/116 (15%), Positives = 25/116 (21%), Gaps = 12/116 (10%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
K V +G A LA G VV + AD +N +
Sbjct: 121 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVT---AAETA 177
Query: 126 FRDQVMATRQKIFETVGAVDILINN--AGIMTPQPILTAKPDDIVAVINVNLLAHF 179
E V + G+ I V + N
Sbjct: 178 DDASRA-------EAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 36.1 bits (84), Expect = 0.003
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 26/113 (23%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCVDL----NQENNAKTADQINTTHNCKKAFPF 120
++ VTGA G+G + L L V D+ E + +
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEI---------------V 47
Query: 121 EMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINV 173
D+ V + + + I+ G+ +P +I+ N+
Sbjct: 48 ACDLADAQAVH----DLVKDCDGI---IHLGGVSVERPWNDILQANIIGAYNL 93
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 35.8 bits (83), Expect = 0.005
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 18/115 (15%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDV 124
K ++TGAG I +A +L G V+ D + + + C + ++ V
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH------MTEDMFCDEFHLVDLRV 83
Query: 125 TFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIV---AVINVNLL 176
+ + VD + N A M + + I+ +I+ N++
Sbjct: 84 M---------ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMI 129
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 35.3 bits (82), Expect = 0.006
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 10/112 (8%)
Query: 37 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVTG-AGHGIGRELAIQLADLGCTVVCVD 95
M + H + M+ L +P + +TG AG IG L L L VV +D
Sbjct: 1 MHHHHHH-GSMGMMSRYEELRKELPAQPKVWLITGVAGF-IGSNLLETLLKLDQKVVGLD 58
Query: 96 -LN--QENNAKTADQINTTHNCKKAFPFEMDVTFRDQVMATRQKIFETVGAV 144
+ N + + + D+ D V V
Sbjct: 59 NFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC----NNACAGVDYV 106
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 34.5 bits (80), Expect = 0.011
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 22/116 (18%)
Query: 66 KFAVTG-AGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPF-EMD 123
K +TG G IG +A L + G VV +D N T + + + F E
Sbjct: 23 KVFITGICGQ-IGSHIAELLLERGDKVVGID-----NFATGRREHLKDH--PNLTFVEGS 74
Query: 124 VTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINVNLLAHF 179
+ V ++ + D +++ A PDD N +
Sbjct: 75 IADHALV----NQLIGDLQ-PDAVVHTAASYK-------DPDDWYNDTLTNCVGGS 118
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 33.4 bits (77), Expect = 0.028
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 50 MAGIVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVD-LN--QENNAKTAD 106
M+ + + + + +TG IG L +L L V+ +D + + N
Sbjct: 11 MSRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVK 70
Query: 107 QINTTHNCKKAFPFEMDVTFRDQVMATRQKIFETVGAV 144
+ +T + E D+ +++ + V V
Sbjct: 71 TLVSTEQWSRFCFIEGDIRDLTTC----EQVMKGVDHV 104
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 32.6 bits (75), Expect = 0.031
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQE 99
++ V G+ G L +L G V+ VD ++E
Sbjct: 8 EYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKE 40
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 31.9 bits (73), Expect = 0.045
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQI 108
+FAV G G G + +L +G V+ VD+N+E A
Sbjct: 8 QFAVIGLGR-FGGSIVKELHRMGHEVLAVDINEEKVNAYASYA 49
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase;
HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6
c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A*
1n1g_A*
Length = 366
Score = 31.8 bits (73), Expect = 0.10
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDV 124
+K V G+G G LA+ L+ V +N+E +N V
Sbjct: 16 NKAVVFGSG-AFGTALAMVLSKKCREVCVWHMNEE----EVRLVNEKRENVLFLK---GV 67
Query: 125 TFRDQVMATRQKIFETVGAVDILI 148
+ T + + +I++
Sbjct: 68 QLASNITFT-SDVEKAYNGAEIIL 90
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 31.5 bits (71), Expect = 0.11
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 25/99 (25%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDV 124
+ AV G G +G +A + A LG V + A+ A+ PF +
Sbjct: 156 ANVAVLGLGR-VGMSVARKFAALGAKVKVGARESDLLARIAEM--------GMEPFHIS- 205
Query: 125 TFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAK 163
K + + VD+ IN P ++TA
Sbjct: 206 -----------KAAQELRDVDVCINTI----PALVVTAN 229
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase
family; structural genomics, oxidoreductase, PSI-2;
HET: UGA; 1.70A {Porphyromonas gingivalis}
Length = 450
Score = 31.7 bits (73), Expect = 0.11
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 26/56 (46%)
Query: 44 IVGISSMAGIVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQE 99
+VG G VGL V+ A+LG V C+D ++
Sbjct: 7 VVG----IGYVGL------------VSATC----------FAELGANVRCIDTDRN 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.12
Identities = 26/169 (15%), Positives = 45/169 (26%), Gaps = 52/169 (30%)
Query: 26 FWI----LETF-----LPDMMEKNRGHIVGI-SSMAGIVGLP-----NLVPYC------- 63
F+I E + P ++E + + G+ S M I L + V
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 64 ----------ASKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHN 113
A V+G L L + L + DQ
Sbjct: 364 KQVEISLVNGAKNLVVSGP--------PQSLYGL-----NLTLRKAKAPSGLDQSRIPF- 409
Query: 114 CKKAFPFEMD---VT--FRDQVMA-TRQKIFETVGAVDILINNAGIMTP 156
++ F V F ++ I + + ++ N I P
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 30.0 bits (67), Expect = 0.49
Identities = 41/224 (18%), Positives = 69/224 (30%), Gaps = 72/224 (32%)
Query: 8 NTSE--EEIRKIFDV-NVFSHFWI------LETFLPDMMEKNRGHIVGISSMAGIVGLPN 58
NT + EE+R ++ +V I L + ++ + G++ + + P+
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-PS 223
Query: 59 LVP---YCAS--------------KFAVTGAGHGIG-RELAIQLADLGCTVVCVDL---- 96
P Y S + VT G EL L G T L
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--GATGHSQGLVTAV 281
Query: 97 ---------NQENNAKTADQ----INTTHNCKKAFPFEMDVTFRDQVMATRQKIFETVGA 143
+ + + A I C +A+P + + ++
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYP---NTSLPPSILE----------- 325
Query: 144 VDILINNAGIMTPQPILT------AKPDDIVAVINVNLLAHFWV 181
D L NN G P P+L+ + D V N +L A V
Sbjct: 326 -DSLENNEG--VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Score = 28.9 bits (64), Expect = 1.3
Identities = 19/123 (15%), Positives = 31/123 (25%), Gaps = 59/123 (47%)
Query: 15 RKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVTGAGH 74
RK+ FS+ FLP ++ P+ S + A
Sbjct: 412 RKL----KFSN-----RFLP------------VA-----------SPF-HSHL-LVPASD 437
Query: 75 GI-----GRELAIQLADLGCTVVCV----DLNQENNAKT---ADQI-------------N 109
I ++ D+ V DL + + + D I
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 110 TTH 112
TH
Sbjct: 498 ATH 500
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 31.0 bits (70), Expect = 0.13
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 75 GIGRELAIQLADLGCTVVCVDLN-------QENNAKTADQINTTH-NCKKAFPFEMDVTF 126
G+G + L D G VV VD++ +E + + +K FE D TF
Sbjct: 48 GVGG-FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LSFE-DKTF 104
Query: 127 RDQVMA 132
D V+
Sbjct: 105 -DYVIF 109
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.7 bits (70), Expect = 0.17
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCV 94
K + G+ +G+ L L+ +
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 31.1 bits (70), Expect = 0.18
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQE 99
G G G +A+ L G + +D +
Sbjct: 47 GVGTGR---IALPLIARGYRYIALDADAA 72
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 30.8 bits (70), Expect = 0.19
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 28/115 (24%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
+ VTGA +GR + +LA + + DL + D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADL--SPLDPAGPNEEC---------VQCDLA 53
Query: 126 FRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKPDDIVAVINV----NLL 176
+ V V D +++ GI +P + I+ N+ NL
Sbjct: 54 DANAV-------NAMVAGCDGIVHLGGISVEKP-----FEQILQG-NIIGLYNLY 95
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 31.0 bits (71), Expect = 0.20
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
A+ GAG G LA+ LA G V + D++ + P +
Sbjct: 31 PIAILGAG-SWGTALALVLARKGQKVRLWS----YESDHVDEMQAEGVNNRYLP---NYP 82
Query: 126 FRDQVMATRQKIFETVGAVDILI 148
F + + A + ++ V ++
Sbjct: 83 FPETLKAY-CDLKASLEGVTDIL 104
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate
synthesis, exopolysaccharide, C fibrosis; HET: UGA;
1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Length = 478
Score = 31.0 bits (71), Expect = 0.20
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 26/56 (46%)
Query: 44 IVGISSMAGIVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQE 99
I+G +G VGL VTGA LAD+G V C+D++Q
Sbjct: 13 IIG----SGSVGL------------VTGAC----------LADIGHDVFCLDVDQA 42
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 30.8 bits (70), Expect = 0.23
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 37/119 (31%)
Query: 69 VTGAGHGIGRELAIQLADLGC--TVVCVDLNQENNAKTADQINTTHNCKKAFPF-EMDVT 125
VTG+ IG EL LA+ V+ D+ Q + F +DV+
Sbjct: 4 VTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGG--------------IKFITLDVS 49
Query: 126 FRDQVMATRQKIFETVGAVDILINNAGIMTPQ----PILTAKPDDIVAVINV----NLL 176
RD++ + E +D + + AGI++ + P L K +N+ N+L
Sbjct: 50 NRDEI----DRAVEKYS-IDAIFHLAGILSAKGEKDPALAYK-------VNMNGTYNIL 96
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 30.3 bits (69), Expect = 0.29
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCT--VVCVDLNQENNAKTADQIN 109
K V G G+ +G A+ AD C V+ N +++ + +N
Sbjct: 19 KKIGVLGMGY-VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLN 64
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 30.1 bits (68), Expect = 0.31
Identities = 7/78 (8%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 75 GIGRELAIQLA-DLGCTVVCVDLNQENNAKTADQINTTHNCK------KAFPFEMDVTFR 127
G+G + + G +D+ ++++ + F + F
Sbjct: 65 GLGG-GCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFP-ENNF- 121
Query: 128 DQVMATRQKIFETVGAVD 145
D + + + + +
Sbjct: 122 DLIYS--RDAILALSLEN 137
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 30.2 bits (68), Expect = 0.32
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 18/77 (23%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE--NNAKTADQINTTHNCKKAFPFEMDVTFRDQVMA 132
G G ++LA+ G VV +DL++E A+ +KA + + F +
Sbjct: 51 GTGI-PTLELAERGYEVVGLDLHEEMLRVAR-----------RKAKERNLKIEFLQGDVL 98
Query: 133 TRQKIFETVGAVDILIN 149
D +
Sbjct: 99 E----IAFKNEFDAVTM 111
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 30.0 bits (68), Expect = 0.35
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCV 94
+ V GA + R L +L + G V +
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAM 51
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 29.8 bits (67), Expect = 0.37
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G A + G V D + E
Sbjct: 53 GAGY-QAEAMLAAGFDVDATDGSPE 76
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 29.6 bits (67), Expect = 0.39
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQE 99
G G+G L + + C+D+N
Sbjct: 25 GCGNGF---YCKYLLEFATKLYCIDINVI 50
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 29.8 bits (67), Expect = 0.39
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G LAD TV ++L+ +
Sbjct: 60 GTGM-HLRHLADSFGTVEGLELSAD 83
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 29.8 bits (67), Expect = 0.41
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 72 AGHGIGRELAIQLADLGCTVVCVDL 96
AG G GR + L+ G V+ DL
Sbjct: 53 AGCGQGR-IGGYLSKQGHDVLGTDL 76
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 29.8 bits (67), Expect = 0.42
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G GR ++ LA G V D N
Sbjct: 42 GNGR-NSLYLAANGYDVDAWDKNAM 65
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 29.9 bits (68), Expect = 0.43
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 56 LPNLVPYCASKFAVTGAGHGI---------GRELAIQLADLGCTVVCVDLNQENNAKTAD 106
+PN + Y + +A+ EL L D T + V +
Sbjct: 84 IPNSIDYVMTIYALWRVA-ATPVPINPMYKSFELEHILNDSEATTLVV---HSMLYENFK 139
Query: 107 QINTTHNCKKAFPFEMDVTFRDQVMATRQKIFETV 141
+ ++ F +V +VM + + FE V
Sbjct: 140 PVLEKTGVERVFVVGGEVNSLSEVMDSGSEDFENV 174
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 29.6 bits (67), Expect = 0.43
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 18/108 (16%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRD 128
V +GR LA LA+ G TV VD+N + + + D
Sbjct: 182 VINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKH-----------HVED 230
Query: 129 QVMATRQKIFETVGAVDILINNAGIMTPQPILTA---KPDDIVAVINV 173
+ + + D++I G+ + K + IN
Sbjct: 231 LGEYSEDLLKKCSLDSDVVI--TGVPSENYKFPTEYIKEGAV--CINF 274
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 29.7 bits (67), Expect = 0.47
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLG-CTVVCVDLNQENN 101
S+F V G IG+ + ++ + VD++ ENN
Sbjct: 36 SRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDIS-ENN 72
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 29.5 bits (66), Expect = 0.53
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G+GR L DLG V ++L+
Sbjct: 92 GMGR-LTFPFLDLGWEVTALELSTS 115
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 29.4 bits (66), Expect = 0.55
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQ-------ENNAKT--ADQINTTHNCKKAFPFE 121
G G G LA + + +DL EN K AD++ PF+
Sbjct: 56 GTG-GQTLFLA---DYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111
Query: 122 MDVTFRDQVMA 132
+ D + +
Sbjct: 112 -NEEL-DLIWS 120
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 29.4 bits (67), Expect = 0.56
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 28/86 (32%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
+ +TGA +G++L +L + D +D+T
Sbjct: 7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDIT 43
Query: 126 FRDQVMATRQKIFETVGAVDILINNA 151
QV Q+I I+I+ A
Sbjct: 44 NISQVQQVVQEI-----RPHIIIHCA 64
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 29.4 bits (66), Expect = 0.57
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 70 TGAGHGIGRELAIQLADLGCTVVCVDLNQE 99
TG GH +A A VV DL ++
Sbjct: 46 TGGGH-----VANAFAPFVKKVVAFDLTED 70
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 29.3 bits (66), Expect = 0.59
Identities = 3/25 (12%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G ++L+++
Sbjct: 50 GTGT-HLEHFTKEFGDTAGLELSED 73
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 29.4 bits (67), Expect = 0.63
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 28/86 (32%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
K +TGA +GRE+ QL V+ D+ ++D+T
Sbjct: 14 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDIT 50
Query: 126 FRDQVMATRQKIFETVGAVDILINNA 151
V + +++IN A
Sbjct: 51 NVLAVNKFFNEK-----KPNVVINCA 71
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 29.0 bits (64), Expect = 0.64
Identities = 11/116 (9%), Positives = 33/116 (28%), Gaps = 5/116 (4%)
Query: 56 LPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCK 115
+L ++ V G + L+ G VV +L++ + + +
Sbjct: 15 WSSLNVVPGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHIT 71
Query: 116 KAFPFEMDVTFRDQVMATR--QKIFETVGAVDILINNAGIMTPQPILTAKPDDIVA 169
F++ ++ +G + A ++ + + +
Sbjct: 72 SQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLE 127
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga
maritima}
Length = 335
Score = 29.4 bits (67), Expect = 0.65
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHN 113
+F V GAG G A L + G V+ +E D IN +H
Sbjct: 16 RFFVLGAG-SWGTVFAQMLHENGEEVILWARRKE----IVDLINVSHT 58
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 29.5 bits (65), Expect = 0.66
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 14/84 (16%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
+ G+G + R L D G V E+ K + + + + P +DV
Sbjct: 5 SVLMLGSG-FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVN 57
Query: 126 FRDQVMATRQKIFETVGAVDILIN 149
+ V D++I+
Sbjct: 58 -------DDAALDAEVAKHDLVIS 74
>2fmc_A Hydrophobin; beta barrel, flexible loop, disulphide bonds, surface
active protein; NMR {Neurospora crassa} PDB: 2k6a_A
2lfn_A
Length = 82
Score = 27.8 bits (61), Expect = 0.67
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 56 LPNLVPYCASKFAVTGAGHGIGRELAIQL-ADLGCTVVCVDLNQENNAK--TADQINT 110
+ + PYC + G+ + + L A LGC V + + K D NT
Sbjct: 11 IDDYKPYCCQSMSGPAGSPGLLNLIPVDLSASLGCVVGVIGSQCGASVKCCKDDVTNT 68
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 29.1 bits (65), Expect = 0.68
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 70 TGAGHGIGRELAIQLADLGCTVVCVDLNQE 99
+G G+ L+ L V +D + E
Sbjct: 55 SGTGY-----WTRHLSGLADRVTALDGSAE 79
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 29.3 bits (66), Expect = 0.69
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCV-DLNQENNAKTADQ 107
+FA G H ++ QL D G + V + + +N AK
Sbjct: 6 RFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL 48
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 29.2 bits (66), Expect = 0.73
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 44 IVGISSMAGIVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVD 95
+V + + +G A K + G+G +G+E+AI+ LG VV VD
Sbjct: 1 MVVMIKLRDELGTATTDS--AQKILLLGSGE-LGKEIAIEAQRLGVEVVAVD 49
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 28.9 bits (65), Expect = 0.83
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQEN--NAKT-ADQINTTHNCKKAFPFE 121
G G L + + G V ++ E AK D + P+E
Sbjct: 40 GCSSGA---LGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYE 90
>3c26_A Putative acetyltransferase TA0821; NP_394282.1, A putative
acetyltransferase, acetyltransferase family, structural
genomics; 2.00A {Thermoplasma acidophilum dsm 1728}
Length = 266
Score = 28.9 bits (64), Expect = 0.87
Identities = 10/66 (15%), Positives = 16/66 (24%), Gaps = 9/66 (13%)
Query: 42 GHIVGISSMAGIVGLPNLVPYCASKFAVTGA--GHGIGREL---AIQLADLGCTVVCVDL 96
G V + LP+ V G +G + IQ + +
Sbjct: 69 GRPVA---TIHMEKLPDGSVML-GGLRVHPEYRGSRLGMSIMQETIQFLRGKTERLRSAV 124
Query: 97 NQENNA 102
N
Sbjct: 125 YSWNEP 130
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 28.8 bits (65), Expect = 0.91
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 66 KFAVTGA-GHGIGRELAIQLADLGCTVVCVDLNQENNAKTAD 106
K+AV GA G +G A + G +V + + A
Sbjct: 15 KYAVLGATGL-LGHHAARAIRAAGHDLVLIHRPSSQIQRLAY 55
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 28.5 bits (64), Expect = 0.92
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G L L VDL+QE
Sbjct: 47 GTGN-LTENLCPKFKNTWAVDLSQE 70
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.8 bits (64), Expect = 0.93
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G +I L + G +V VD + +
Sbjct: 67 GTGV-DSIMLVEEGFSVTSVDASDK 90
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 28.7 bits (65), Expect = 0.95
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 66 KFAVTGAGHG-IGRELAIQLADLGCTVVCVD-------LNQENNAKTADQINTTHNCKKA 117
+ +TG G IG LA L G V +D + E K ++
Sbjct: 9 RILITGGA-GFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLE------ 61
Query: 118 FPFEMDVTFRDQV 130
E D++ V
Sbjct: 62 -LEERDLSDVRLV 73
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped
dimer, enzyme complex with COFA product,
oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas
aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB:
1mfz_A* 1muu_A*
Length = 436
Score = 28.7 bits (65), Expect = 1.00
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 26/56 (46%)
Query: 44 IVGISSMAGIVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQE 99
I G+ G VG V L+ G V+ VD++
Sbjct: 5 IFGL----GYVGA------------VCAGC----------LSARGHEVIGVDVSST 34
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 28.7 bits (64), Expect = 1.0
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G +L+ G V VD+++
Sbjct: 63 GDGY-GTYKLSRTGYKAVGVDISEV 86
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 28.7 bits (64), Expect = 1.0
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQE 99
GAG G ++ LA+ G V V+ +
Sbjct: 42 GAGTGG---YSVALANQGLFVYAVEPSIV 67
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTH 112
++ GAG +G L++ L D G V E + + I+
Sbjct: 2 IVSILGAG-AMGSALSVPLVDNGNEVRIWG--TEFDTEILKSISAGR 45
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 28.6 bits (64), Expect = 1.1
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G+ ++++LA G +V +D+N E
Sbjct: 40 GSGK-ISLELASKGYSVTGIDINSE 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.1
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 121 EMDVTFRDQVMATRQKIFETVGAVDILINNAGIMTPQPILTAKP-DDIV----AVINVNL 175
E ++D + + D+ P+ IL+ + D I+ AV
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQ------DMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 176 LAHFWV 181
L FW
Sbjct: 67 L--FWT 70
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 28.2 bits (63), Expect = 1.2
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDL 96
G G G L LAD G V VD
Sbjct: 60 GCGEGW---LLRALADRGIEAVGVDG 82
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 28.3 bits (63), Expect = 1.2
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G+ ++ L + G VV VD ++E
Sbjct: 64 GTGK-WSLFLQERGFEVVLVDPSKE 87
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 71 GAGHGIG-RELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFE----MDVT 125
GAG+G R L G ++ C+++ N + ++ N + +++
Sbjct: 90 GAGYGGAARFLV---RKFGVSIDCLNIAPVQNKR-NEEYNNQAGLADNITVKYGSFLEIP 145
Query: 126 FRD 128
D
Sbjct: 146 CED 148
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 15/72 (20%)
Query: 71 GAGHGIGRELAIQLA-DLGCTVVCVDLNQ-------ENNAKT--ADQINTTHNCKKAFPF 120
G G G + LA + V +D N ++ +++ PF
Sbjct: 54 GCGTGG---QTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF 110
Query: 121 EMDVTFRDQVMA 132
+ D + +
Sbjct: 111 R-NEEL-DLIWS 120
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 28.1 bits (62), Expect = 1.3
Identities = 12/60 (20%), Positives = 15/60 (25%), Gaps = 7/60 (11%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQEN----NAKTADQINTTHNCKKAFPFEMDVTF 126
G GHG A + D + E A N K P + F
Sbjct: 56 GCGHG---PDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPF 112
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 28.4 bits (64), Expect = 1.4
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 13/91 (14%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLN--------QENNAKTADQINTTHNCKKA 117
K ++ G+G ++ + + N + D IN H K
Sbjct: 23 KISILGSG-NWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKY 81
Query: 118 FPFEMDVTFRDQVMATRQKIFETVGAVDILI 148
V ++A + + D+LI
Sbjct: 82 LK---GVPLPHNIVAH-SDLASVINDADLLI 108
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 27.9 bits (62), Expect = 1.4
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTA 105
G G A LA LG V VD + AK
Sbjct: 37 AEGEG---RNACFLASLGYEVTAVDQSSVGLAKAK 68
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 28.3 bits (64), Expect = 1.5
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 22/86 (25%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
+ +TGA +G EL+ L++ + I ++ + +++D+T
Sbjct: 2 RTLITGASGQLGIELSRLLSERH-----------------EVIKVYNSSEIQGGYKLDLT 44
Query: 126 FRDQVMATRQKIFETVGAVDILINNA 151
++ K D++IN A
Sbjct: 45 DFPRLEDFIIKK-----RPDVIINAA 65
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 28.2 bits (63), Expect = 1.5
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 33 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVV 92
D+ N V + M I + S+ AV G G G +A A LG V
Sbjct: 128 RDDIAIYNSIPTVEGTIMLAIQHTDYTIH--GSQVAVLGLGR-TGMTIARTFAALGANVK 184
Query: 93 CVDLNQE 99
+
Sbjct: 185 VGARSSA 191
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 28.0 bits (63), Expect = 1.6
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTH 112
+ GAG +G ++A L G + C + K+ + +
Sbjct: 144 IMGAGV-LGAKVAESLQAWGFPLRCWS----RSRKSWPGVESYV 182
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.0 bits (63), Expect = 1.6
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
K A+ GA G Q G V +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL 33
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 28.3 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCVD 95
A++ + G+G +G+E+AI+ LG V+ VD
Sbjct: 11 ATRVMLLGSGE-LGKEVAIECQRLGVEVIAVD 41
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 28.2 bits (63), Expect = 1.7
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPF-EMDVTFR 127
+ G IG L+ ++ + V + +T + + + F E D+T
Sbjct: 29 ILGVNGFIGHHLSKRILETTDWEVFGM-----DMQTDRLGDLVKH--ERMHFFEGDITIN 81
Query: 128 DQVMATRQKIFETVGAVDILINNAGIMTP-----QPILTAKPDDIVAVINVNLLA 177
+ + V D+++ I TP QP+ + D A + + A
Sbjct: 82 KEW------VEYHVKKCDVILPLVAIATPATYVKQPLRVFEL-DFEANLPIVRSA 129
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 28.0 bits (62), Expect = 1.7
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCV 94
K + GA G + + + G V +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAI 30
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 27.7 bits (62), Expect = 1.7
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
K + GA +G L + + G V V
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAV 34
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 27.9 bits (63), Expect = 1.9
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCVDLN--------QENNAKTADQINTTHNCK 115
+ K + G+G G +A + + D K + INT H
Sbjct: 8 SKKVCIVGSG-NWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENV 66
Query: 116 KAFPFEMDVTFRDQVMATRQKIFETVGAVDILI 148
K P V+A + + DILI
Sbjct: 67 KYLP---GHKLPPNVVAV-PDVVQAAEDADILI 95
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 27.9 bits (62), Expect = 1.9
Identities = 10/29 (34%), Positives = 10/29 (34%), Gaps = 6/29 (20%)
Query: 74 HGIG------RELAIQLADLGCTVVCVDL 96
HG R LA A G TV L
Sbjct: 47 HGFTGTPHSMRPLAEAYAKAGYTVCLPRL 75
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 27.5 bits (61), Expect = 2.0
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQE 99
G+G G LA LG + ++
Sbjct: 49 GSGTG---RWTGHLASLGHQIEGLEPATR 74
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 27.5 bits (62), Expect = 2.2
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 66 KFAVTGAGHG-IGRELAIQLADLGCTVVCVD 95
K AVTG G G +G+ + + + G T + +
Sbjct: 4 KIAVTG-GTGFLGQYVVESIKNDGNTPIILT 33
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 27.3 bits (60), Expect = 2.4
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCV 94
K AV GA G + + G V+ V
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAV 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 27.1 bits (61), Expect = 2.7
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 79 ELAIQLADLGCTVVCV--DLNQ 98
++ L+ G +V DLN
Sbjct: 174 KILSALSQQGLAIVMSSHDLNH 195
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 27.2 bits (60), Expect = 2.8
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 72 AGHGIGRELAIQLADLGCTVVCVDLN-------QENNAKTADQINTTHNCKKAFPFEMDV 124
G G + G ++++ + + + ++N + + PF+ D
Sbjct: 30 CGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFK-DE 88
Query: 125 TFRDQVMA 132
+ V +
Sbjct: 89 SM-SFVYS 95
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 27.2 bits (61), Expect = 2.8
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 65 SKFAVTGAGHGIGRELAIQLA--DLGCTVVCVDLNQENNAKTAD--QINTTHNCK 115
+K AV GA GIG+ L++ L L + D+ AD I T K
Sbjct: 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA-HTPGVAADLSHIETRATVK 54
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 27.2 bits (61), Expect = 3.0
Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 21/86 (24%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVT 125
+ VTGA +GR + + V + ++++
Sbjct: 4 RVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFE----------------QVNLL 47
Query: 126 FRDQVMATRQKIFETVGAVDILINNA 151
+ V ++++ A
Sbjct: 48 DSNAVHHIIHDF-----QPHVIVHCA 68
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics,
PSI-2, protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 27.1 bits (60), Expect = 3.0
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQE 99
G G G L +L G TV ++ ++E
Sbjct: 53 GVGTG---NLTNKLLLAGRTVYGIEPSRE 78
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 27.2 bits (60), Expect = 3.4
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 57 PNLVPYCASKFAVTG----AGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQI 108
+ A+K G G GR ++ L+ LG V D N+ + A +
Sbjct: 108 IHGDVVDAAKIISPCKVLDLGCGQGR-NSLYLSLLGYDVTSWDHNENSIAFLNETK 162
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 27.1 bits (60), Expect = 3.7
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCV-DLNQENNAKTADQ 107
+FA G H L G + + + A+ +
Sbjct: 28 RFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV 70
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 26.9 bits (59), Expect = 3.9
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQE 99
G G L+ V+ +D+++
Sbjct: 66 GNGT-QTKFLSQFFPRVIGLDVSKS 89
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 26.7 bits (59), Expect = 4.0
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 73 GHGIGRELAIQLA-DLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFE----MDVTFR 127
G GIG+ A++LA V + +++ + A+ T F MD+ F
Sbjct: 69 GCGIGK-PAVRLATARDVRVTGISISRPQVNQ-ANARATAAGLANRVTFSYADAMDLPFE 126
Query: 128 D 128
D
Sbjct: 127 D 127
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 26.8 bits (60), Expect = 4.1
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 75 GIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTHNCKKAFPFEMDVTFRDQVMATR 134
G+ + L A L T + +++ K +Q+N +A +++DV ++V+
Sbjct: 49 GVAKVLDQLGAKLVFTYR-KERSRKELEKLLEQLN----QPEAHLYQIDVQSDEEVINGF 103
Query: 135 QKIFETVGAVDILI 148
++I + VG +D +
Sbjct: 104 EQIGKDVGNIDGVY 117
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 26.9 bits (59), Expect = 4.2
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTAD 106
A+ GAG +G + ++ D + +++ E +
Sbjct: 13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG 53
>2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics,
L-serine dehydratase, structure initiative; 2.05A
{Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A
Length = 151
Score = 26.2 bits (58), Expect = 4.2
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 67 FAVTGAGHGIGRELAIQLADLGCTVVCVDLNQEN----NAKTADQINTTHNCKKAFPFEM 122
A+TG GHG + AI VD ++ +N + F
Sbjct: 44 LALTGKGHGTDK--AILNGLENKAPETVDPASMIPRMHEILDSNLLNLAGKKEIPFHEAT 101
Query: 123 DVTFR 127
D F
Sbjct: 102 DFLFL 106
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 26.8 bits (60), Expect = 4.5
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 66 KFAVTGAGHGIGRELAIQLA---DLGCTVVCVDLNQENNAKTAD--QINT 110
K AV GA GIG+ LA+ L G + D+ D I T
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPT 51
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 26.4 bits (59), Expect = 4.5
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTT 111
G LA + VV ++ ++E + A ++ T
Sbjct: 7 GGET-TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT 46
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 26.8 bits (60), Expect = 4.6
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 66 KFAVTGAG---HGIGRELAIQLADLGCTVVCVDLNQENNAKTADQI 108
K V GAG GI VV D++++ +QI
Sbjct: 14 KVFVIGAGLMGRGIA-----IAIASKHEVVLQDVSEKALEAAREQI 54
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 26.6 bits (59), Expect = 4.6
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQINTTH 112
+ +TG +G L +L G V VD N T + N H
Sbjct: 29 RILITGGAGFVGSHLTDKLMMDGHEVTVVD-----NFFTGRKRNVEH 70
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 26.9 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCVD 95
V GAG +G L L LG V+ D
Sbjct: 120 GVVGAGQ-VGGRLVEVLRGLGWKVLVCD 146
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 26.8 bits (60), Expect = 4.8
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAK 103
V G GH IG+ G V+ D
Sbjct: 149 GVMGTGH-IGQVAIKLFKGFGAKVIAYDPYPMKGDH 183
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 26.6 bits (59), Expect = 4.8
Identities = 7/29 (24%), Positives = 7/29 (24%), Gaps = 6/29 (20%)
Query: 74 HGIG------RELAIQLADLGCTVVCVDL 96
HG R L L G T
Sbjct: 23 HGFTGNSADVRMLGRFLESKGYTCHAPIY 51
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis
SP} SCOP: a.132.1.1
Length = 240
Score = 26.4 bits (57), Expect = 4.9
Identities = 12/68 (17%), Positives = 23/68 (33%)
Query: 4 HPLKNTSEEEIRKIFDVNVFSHFWILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 63
+ + + EEE+ K D + SH + E +E++ G + + Y
Sbjct: 47 YFVYSAMEEEMAKFKDHPILSHIYFPELNRKQSLEQDLQFYYGSNWRQEVKISAAGQAYV 106
Query: 64 ASKFAVTG 71
V
Sbjct: 107 DRVRQVAA 114
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 26.6 bits (59), Expect = 5.3
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 43 HIVGISSMAGIVGLPNLVP 61
H+VG+SS+AG G LVP
Sbjct: 649 HVVGVSSLAG--GHLTLVP 665
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 26.5 bits (59), Expect = 5.3
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCVD 95
+ G G+ +G L +L LG + D
Sbjct: 123 GIVGVGN-VGSRLQTRLEALGIRTLLCD 149
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 26.8 bits (60), Expect = 5.4
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 28/66 (42%)
Query: 36 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLG--CTVVC 93
M E + +G AG VG T + +A + V
Sbjct: 2 MFEIKKICCIG----AGYVGG------------PTCSV----------IAHMCPEIRVTV 35
Query: 94 VDLNQE 99
VD+N+
Sbjct: 36 VDVNES 41
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 26.3 bits (58), Expect = 5.7
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 71 GAGHGIGRELAIQLADLGCTVVCVDLNQE 99
G G G +L ++A G V+ D
Sbjct: 65 GCGTG---QLTEKIAQSGAEVLGTDNAAT 90
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 26.5 bits (59), Expect = 5.9
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 33 LPDMMEKNRGHIVGISSMAGIVGL----PNLVPYCASKFAVTGAGHGIGRELAIQLADLG 88
LP + + G + + + N + VTGA G+G L G
Sbjct: 116 LPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRG 175
Query: 89 CTVVCVDLNQEN 100
VV N+E
Sbjct: 176 YDVVASTGNREA 187
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase,
ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Length = 491
Score = 26.4 bits (59), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 29 LETFLPDMMEKNRGHIVGI--SSMAGI 53
L + +P+M H VGI + M GI
Sbjct: 9 LRSIVPEMRRVRHIHFVGIGGAGMGGI 35
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 26.5 bits (59), Expect = 6.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 33 LPDMMEKNRGHIVGISSMAGIV 54
L +EK HI+ + MAG++
Sbjct: 714 LAVELEKAGAHIIAVKDMAGLL 735
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 26.3 bits (59), Expect = 7.0
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 38 EKNRGHIVGISSMA---GIVGLPN 58
I+G + GIVGLPN
Sbjct: 9 GIKPPPIIGRFGTSLKIGIVGLPN 32
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 26.0 bits (58), Expect = 7.3
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCVDLNQE 99
V GAG IG + G VVC +
Sbjct: 173 LVIGAG-PIGLVSVLAAKAYGAFVVCTARSPR 203
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 26.0 bits (56), Expect = 7.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAKTADQI 108
+ A+ G +G+ LA++LA LG +V +E A +
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY 44
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 26.1 bits (58), Expect = 7.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 66 KFAVTGAGHGIGRELAIQLA--DLGCTVVCVDLNQENNAKTAD--QINT 110
K A+ GA GIG+ LA+ + L + D+ TAD ++T
Sbjct: 10 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVV-NAPGVTADISHMDT 57
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 26.2 bits (58), Expect = 8.0
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 69 VTG-AGHGIGRELAIQLADLGCTVVCVDLNQEN-NAKTADQINTTHNCKKAFPF-EMDVT 125
VTG AG+ IG ++L + G V D N N + ++ K PF E+D+
Sbjct: 16 VTGGAGY-IGSHTVVELIENGYDCVVAD-NLSNSTYDSVARLEVL--TKHHIPFYEVDLC 71
Query: 126 FRDQVMATRQKIFE 139
R + +K+F+
Sbjct: 72 DRKGL----EKVFK 81
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 25.7 bits (56), Expect = 8.5
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 69 VTGAGHGIG---RELAIQLADLGCTVVCVDL 96
V A HG ++ + G V +DL
Sbjct: 18 VHAAFHG-AWCWYKIVALMRSSGHNVTALDL 47
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 26.0 bits (57), Expect = 8.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCV 94
S+ + GA IGR +A DLG +
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTFLL 34
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 25.8 bits (56), Expect = 8.7
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 66 KFAVTGAGHGIGRELAIQLADLGCTVV 92
K AV G G +GR +A LADLG V
Sbjct: 21 KIAVLGTGT-VGRTMAGALADLGHEVT 46
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 26.0 bits (58), Expect = 9.0
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCVD 95
++ V G G+ IG E+A V +D
Sbjct: 149 DNRLVVIGGGY-IGLEVAATAIKANMHVTLLD 179
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 26.0 bits (58), Expect = 9.0
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVD 95
V G G G G A AD G V V+
Sbjct: 11 VLGGGPG-GYSAAFAAADEGLKVAIVE 36
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 25.7 bits (57), Expect = 9.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 68 AVTGAGHGIGRELAIQLADLGCTVVCVDLNQENNAK 103
V G G IGR A +G TV+ D+ + +
Sbjct: 150 GVVGLGR-IGRVAAQIFHGMGATVIGEDVFEIKGIE 184
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 25.9 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVD 95
V G G G G AI+ A LG V+ V+
Sbjct: 11 VIGTGPG-GYHAAIRAAQLGLKVLAVE 36
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas
aeruginosa} SCOP: c.23.1.3
Length = 196
Score = 25.4 bits (55), Expect = 9.5
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 74 HGIGRELAIQLADLGCTVVCVDLNQENNAKTADQI 108
+ L +QL +GC+V E D +
Sbjct: 22 GEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVV 56
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 25.6 bits (56), Expect = 9.5
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 17/65 (26%)
Query: 38 EKNRGHIVGISSMAGIVGLPNLVPYCASKFAVTGAGHGIGRELAIQLADLGCTVVCVDLN 97
E ++ +V +S G VG S A AI A++G V +++
Sbjct: 139 ENDKSSVVIFTSPCGGVG--------TSTVAAA---------CAIAHANMGKKVFYLNIE 181
Query: 98 QENNA 102
Q
Sbjct: 182 QCGTT 186
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 25.6 bits (57), Expect = 9.7
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 64 ASKFAVTGAGHGIGRELAIQLADLGCTVVCVD 95
A++ + G G IG E+A LG +V ++
Sbjct: 143 ATRLLIVGGGL-IGCEVATTARKLGLSVTILE 173
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3,
oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 25.6 bits (57), Expect = 9.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 65 SKFAVTGAGHGIGRELAIQLADLGCTVVCVDLNQE 99
SK V G G+ IG +I A G V+ VD+NQ+
Sbjct: 12 SKLTVVGLGY-IGLPTSIMFAKHGVDVLGVDINQQ 45
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET:
UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1
c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Length = 475
Score = 25.9 bits (58), Expect = 9.9
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 29 LETFLPDMMEKNRGHIVGI--SSMAGI 53
+ +P+M + H +GI + M+GI
Sbjct: 8 IRKIIPEMRRVQQIHFIGIGGAGMSGI 34
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 25.9 bits (58), Expect = 9.9
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 69 VTGAGHGIGRELAIQLADLGCTVVCVD 95
V GAG G G AI+ A LG V V+
Sbjct: 8 VVGAGPG-GYVAAIRAAQLGQKVTIVE 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.422
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,836,920
Number of extensions: 167328
Number of successful extensions: 1586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1199
Number of HSP's successfully gapped: 548
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.4 bits)