RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14908
(61 letters)
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 64.2 bits (157), Expect = 1e-14
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
ITG GHGIGR A ++ + +V DI++ G ETA K G K
Sbjct: 36 ITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK 81
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 51.7 bits (125), Expect = 3e-10
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIGRE A+ Y +GATV+ + +E+ + A H+ E +
Sbjct: 17 VTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGR 62
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 51.0 bits (123), Expect = 8e-10
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG G GIGR +A ++ + + VV V++ E N+ Q ++ G +
Sbjct: 12 VTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKE 57
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding
domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter
oxydans} SCOP: c.2.1.2
Length = 262
Score = 49.9 bits (120), Expect = 2e-09
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG G IG AL+ G + +D++ + + V+E+G +
Sbjct: 12 VTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE 57
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIG A Y +HGA+VV + +E E + +K G
Sbjct: 19 VTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQP 64
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG G G+GR A++ + GA + VD+S +G + V E
Sbjct: 18 ITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA 61
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 49.4 bits (119), Expect = 3e-09
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
ITG G GIG+E+A+ + + GA+VV DI+ N +++ G +
Sbjct: 16 ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ 61
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 49.4 bits (119), Expect = 3e-09
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIGR +A + GA+VV D+ +G A +++ G K
Sbjct: 17 VTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGK 62
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium
meliloti}
Length = 280
Score = 49.5 bits (119), Expect = 3e-09
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIGR AL + GA VV + E + G +
Sbjct: 13 VTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGE 58
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 49.1 bits (118), Expect = 4e-09
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG IG GA V+ D+ E + + ++ G+
Sbjct: 18 VTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHD 63
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 49.0 bits (117), Expect = 4e-09
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG +G+G L Q + G V DI + ++ ++ G
Sbjct: 13 VTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG 56
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 48.7 bits (117), Expect = 4e-09
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
ITG HGIGR + GA +V DI E E A+ V
Sbjct: 10 ITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVV 55
>3tjr_A Short chain dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium
subsp}
Length = 301
Score = 48.9 bits (117), Expect = 5e-09
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIG A ++ GA +V D+ + + ++ +G
Sbjct: 36 VTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG 79
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 48.7 bits (117), Expect = 6e-09
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIG + + GA V +EK +E + +E+G
Sbjct: 26 VTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLN 71
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus
suis} PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 48.4 bits (116), Expect = 6e-09
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG +GIG +A Y GAT+V DI+++ + K G
Sbjct: 39 VTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGIN 84
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 48.3 bits (116), Expect = 7e-09
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG+G GIG+ A GA VV DI+ + A+ + G
Sbjct: 14 VTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGT 59
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 48.3 bits (116), Expect = 8e-09
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG G GIGR ++++ GATV D+ ET + + G K
Sbjct: 12 VTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSK 57
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 48.0 bits (115), Expect = 9e-09
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
ITG G GIGR AL + G TV + + E A + G +
Sbjct: 33 ITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQ 78
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 47.9 bits (115), Expect = 9e-09
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+T GIG+ AL + GA V+ DI+E E ++ +
Sbjct: 11 LTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRV 56
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 2q45_A
Length = 266
Score = 47.9 bits (115), Expect = 1e-08
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIG + ++ GA + +E NE +++G++
Sbjct: 19 VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQ 64
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 47.9 bits (115), Expect = 1e-08
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
I+G G +G LA + GA +V + + + A+ V + G +
Sbjct: 16 ISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRR 61
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVK 45
+TG GIG + +GA VV V + EK + + H K
Sbjct: 19 VTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFK 59
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD;
1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG G GIG+ +AL+ G V D ++ A + + G
Sbjct: 7 VTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGH 52
>3ak4_A NADH-dependent quinuclidinone reductase; SDR,
(R)-3-quinuclidinol, chiral alcohol, oxidoreductase;
HET: NAD; 2.00A {Agrobacterium tumefaciens}
Length = 263
Score = 47.2 bits (113), Expect = 2e-08
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGY 49
+TG GIG +A GATV D+ ++ G+
Sbjct: 17 VTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGF 61
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 47.2 bits (113), Expect = 2e-08
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIP 58
ITG+ +GIGR A+ + GA V S + ET Q + + G ++
Sbjct: 11 ITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 64
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane
alkaloid biosynthesis, reduction of tropinone to
pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium}
SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIG + + S GA+V ++K N+ + +G+K
Sbjct: 14 VTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFK 59
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 46.8 bits (112), Expect = 3e-08
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
ITG GIG+++AL Y GA V A + G K
Sbjct: 37 ITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGK 82
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 46.7 bits (112), Expect = 3e-08
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG+ G+G A + GA V+ DI E+ + +GY
Sbjct: 14 VTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYD 59
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 46.8 bits (112), Expect = 3e-08
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG+ GIG +A Y GA V S + + K G
Sbjct: 39 VTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVH 84
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 46.5 bits (111), Expect = 3e-08
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIGR +ALQ C GATV AQ + G
Sbjct: 10 VTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG 53
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 46.1 bits (110), Expect = 5e-08
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIP 58
ITG+ +GIGR A+ + GA V +E ET Q + + G +
Sbjct: 31 ITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 46.0 bits (110), Expect = 5e-08
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNF 52
ITG GIG A + +GA VV DI++ + ++ +F
Sbjct: 21 ITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISF 68
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet
of seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 46.0 bits (110), Expect = 5e-08
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIP 58
ITG+ +GIGR A+ + GA V + ET Q + G + ++
Sbjct: 11 ITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 64
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 45.6 bits (109), Expect = 7e-08
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG GHGIG+++ L + G V +DI EK + + A+
Sbjct: 7 VTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK 44
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 45.2 bits (108), Expect = 9e-08
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKE 46
+TG G G +A ++ + G V +D+S + ETA+
Sbjct: 7 VTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWH 48
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 45.2 bits (108), Expect = 1e-07
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+T + GIG +A + GA VV ++ + T ++ G
Sbjct: 19 VTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLS 64
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 44.9 bits (107), Expect = 1e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG G GIG+ +A + GA+V+ V + Q ++ G
Sbjct: 16 VTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALG 59
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 44.9 bits (107), Expect = 1e-07
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIG E+A + G V E+G T + ++E G +
Sbjct: 27 VTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVE 72
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 44.5 bits (106), Expect = 1e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIGR A GA V VD + + + + E+
Sbjct: 12 VTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF 55
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics;
1.95A {Mycobacterium smegmatis}
Length = 266
Score = 44.4 bits (106), Expect = 2e-07
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 5 ITG-TGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+T G GIG A + GA VV D E+ ET + + G
Sbjct: 27 VTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG 71
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative,
EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia
cavernae}
Length = 273
Score = 44.5 bits (106), Expect = 2e-07
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG G GIGR +A Y GA V+ ++ E A + + G
Sbjct: 36 VTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIADGGGS 80
>3imf_A Short chain dehydrogenase; structural genomics, infectious D
center for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 44.4 bits (106), Expect = 2e-07
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
ITG G+G+ +A ++ GA VV +++ E +++ +
Sbjct: 11 ITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQ 56
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 44.2 bits (105), Expect = 2e-07
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIGRE+A GA VV S++ + H E G
Sbjct: 33 VTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG 76
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 44.0 bits (105), Expect = 2e-07
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG GIG +A ++ GA V+ + A+ V
Sbjct: 11 ITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPD 54
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 44.1 bits (105), Expect = 2e-07
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG G GIGRE+A + V+ + ++K + +K GY+
Sbjct: 49 VTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE 94
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 44.1 bits (105), Expect = 3e-07
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
ITG G G G +A ++ GA VV VD + G A
Sbjct: 14 ITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAG 51
>4dqx_A Probable oxidoreductase protein; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.00A {Rhizobium etli}
Length = 277
Score = 43.7 bits (104), Expect = 3e-07
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G GIGR A + +GA VV D++E A
Sbjct: 32 VTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVAN 69
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET:
NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 43.6 bits (104), Expect = 3e-07
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIGR +A + GA V D+ +G E A+ + ++
Sbjct: 11 VTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQ 55
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A
{Burkholderia pseudomallei}
Length = 270
Score = 43.7 bits (104), Expect = 3e-07
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIGR +AL+ GA V+G +E G K+ G +
Sbjct: 33 VTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLE 78
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 43.3 bits (103), Expect = 4e-07
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+T H G AL+ G TV D S K +E E +
Sbjct: 6 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQ 50
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 43.4 bits (103), Expect = 5e-07
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIG +A + G V G K + ++ G+
Sbjct: 29 VTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHD 74
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short
chain dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 43.1 bits (102), Expect = 5e-07
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 1 MRTE-ITGTGHGIGRELALQYCSHGATVVGVDISE 34
M I+G GIG + G +VG+DI +
Sbjct: 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD 35
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 42.9 bits (102), Expect = 6e-07
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI--SEKGNNETAQHVKERGYK 50
+TG GIGR ++ + + G + D+ E+ ET + ++ K
Sbjct: 7 VTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQK 54
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
protein, NAD(P)-binding rossmann fold, csgid,
oxidoreductase; 1.95A {Francisella tularensis subsp}
Length = 247
Score = 42.9 bits (102), Expect = 6e-07
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIG E+A S GATVVG S+ + +KE+G+K
Sbjct: 10 VTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFK 55
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 43.0 bits (102), Expect = 6e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIGR +A + GA V S + + + E G
Sbjct: 46 VTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG 89
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 42.9 bits (102), Expect = 7e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG GIGR + GA++V VD E+ E
Sbjct: 11 VTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA 48
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 42.6 bits (101), Expect = 7e-07
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIGR +A + GA V S + + + G
Sbjct: 15 VTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG 58
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 42.6 bits (101), Expect = 8e-07
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIG +A + S GA VV + + + G
Sbjct: 34 VTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG 77
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 42.5 bits (101), Expect = 9e-07
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVK 45
+TG GIGR +A ++ G+ V+ + I + G H++
Sbjct: 13 VTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-EAKYDHIE 52
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 42.6 bits (101), Expect = 9e-07
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG G G+GR +A + G +VV + A + R
Sbjct: 38 VTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT 81
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus
SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
ITG +GIGR +A ++ GA + D+ E ++ G +
Sbjct: 12 ITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLGRR 55
>3gvc_A Oxidoreductase, probable short-chain type
dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG,
SBRI, structural genomics; 2.45A {Mycobacterium
tuberculosis}
Length = 277
Score = 42.1 bits (100), Expect = 1e-06
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G GIG +A + G V+ DI + A
Sbjct: 34 VTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAAT 71
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 42.1 bits (100), Expect = 1e-06
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
ITG GIG E + GA VV D+ E A
Sbjct: 16 ITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAA 53
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 42.1 bits (100), Expect = 1e-06
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G+G E+ GA V DI+E + A
Sbjct: 11 VTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 42.1 bits (100), Expect = 1e-06
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
++G G+G + GA VV DI ++ A
Sbjct: 12 VSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA 49
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 42.1 bits (100), Expect = 1e-06
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G GIG + + + GA VV D E G Q
Sbjct: 14 VTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ 51
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides}
PDB: 2wdz_A* 3lqf_A*
Length = 254
Score = 42.1 bits (100), Expect = 1e-06
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG G GIG E+ + + GA ++ +D + AQ +
Sbjct: 16 VTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAV 59
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 42.2 bits (100), Expect = 1e-06
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIG GA V + +++R
Sbjct: 13 VTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF 56
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd;
NAD(P)-binding, structural genomics, PSI-biology; HET:
MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 42.1 bits (100), Expect = 1e-06
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
ITG+ GIGR A Y GATV DI + + A
Sbjct: 13 ITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAA 50
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 41.8 bits (99), Expect = 2e-06
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQH-VKERGYK 50
+TG GIG + GA V + S E + KE G K
Sbjct: 19 VTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVK 65
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium
loti} PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 41.7 bits (99), Expect = 2e-06
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG GIG+ +A + + GATV+ DI+ +G A
Sbjct: 11 VTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAA 48
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase;
HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2
PDB: 2hsd_A*
Length = 254
Score = 41.7 bits (99), Expect = 2e-06
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
ITG G+G E A Q + GA VV D+ ++ TA+
Sbjct: 10 ITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes,
fatty acid synthesis, short-chain
dehydrogenases/reductases, structural genomics; HET:
ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Length = 303
Score = 41.5 bits (98), Expect = 2e-06
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
+TG GIG+ + + G+ VV + A ++
Sbjct: 23 VTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPT 69
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 41.0 bits (97), Expect = 3e-06
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNN------------ETAQHVKERG 48
ITG G GR A++ + GA ++ VD+ ++ + T + V++ G
Sbjct: 18 ITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG 73
>4e4y_A Short chain dehydrogenase family protein; structural genomics,
the center for structural genomics of I diseases,
csgid, niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 41.0 bits (97), Expect = 3e-06
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV-GVDISEKGNNETAQHVK 45
+TG GIG+ + + V +DI + + E + +K
Sbjct: 9 VTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIK 50
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 41.1 bits (97), Expect = 3e-06
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGN--NETAQHVKERGYK 50
+TG GIG +A + GATVV +D+ A V
Sbjct: 218 VTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALT 265
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 41.1 bits (97), Expect = 3e-06
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHV 44
+ G +G E+ + S + +D E N + + +
Sbjct: 27 VLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTI 66
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 41.0 bits (97), Expect = 3e-06
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKER 47
+TG G+G +A G +VV + + +E AQ + E+
Sbjct: 26 VTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK 68
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 41.0 bits (97), Expect = 3e-06
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGN-NETAQHVKERGYK 50
IT G+G+++ + + G +V S+ + K+ +
Sbjct: 12 ITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEER 58
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase;
HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 40.9 bits (97), Expect = 3e-06
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G GIGR+ + GA VV V + A+
Sbjct: 12 VTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI-SEKGNNETAQHVKERGYK 50
ITG+ GIG A + GA V + +ET ++ G
Sbjct: 12 ITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGD 58
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 41.0 bits (97), Expect = 3e-06
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 16/60 (26%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI----------------SEKGNNETAQHVKERG 48
+TG G GR A++ GA ++ VDI + + ETA VK
Sbjct: 16 VTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN 75
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 41.0 bits (97), Expect = 3e-06
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI-------------SEKGNNETAQHVKERGYK 50
ITG G GR A++ + GA ++ DI S + +ETA+ V+++G K
Sbjct: 20 ITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRK 78
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 40.9 bits (97), Expect = 3e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G GIGR + GA VV V ++ + +
Sbjct: 12 VTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 40.6 bits (96), Expect = 4e-06
Identities = 10/37 (27%), Positives = 11/37 (29%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETA 41
+T H G G TVV D S E
Sbjct: 6 VTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQ 42
>3qlj_A Short chain dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 40.8 bits (96), Expect = 4e-06
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV------GVDISEKGNNETAQHVKE 46
+TG G GIGR AL + + GA VV G+D S AQ V +
Sbjct: 32 VTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVD 79
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 40.6 bits (96), Expect = 4e-06
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG GIG ++A + + GA +V + + + E+
Sbjct: 25 ITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF 68
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 40.7 bits (96), Expect = 4e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI------------SEKGNNETAQHVKERG 48
ITG G GR A+ GA ++ +D+ + ET + V+ G
Sbjct: 33 ITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG 88
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 40.6 bits (96), Expect = 4e-06
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G GIG AL + GA V G D +
Sbjct: 12 VTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFA 49
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 40.3 bits (95), Expect = 6e-06
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNN------------ETAQHVKERG 48
+TG G GR A++ GA ++ DI E V++ G
Sbjct: 15 VTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG 70
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 40.2 bits (95), Expect = 6e-06
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDIS-EKGNNETAQHVKERGYK 50
ITG+ G+G+ +A+++ + A VV S E N + +K+ G +
Sbjct: 12 ITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE 58
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 40.3 bits (95), Expect = 6e-06
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNN------------ETAQHVKERGYK 50
ITG G GR A++ GA +V +D+ + N ET + V+E+G +
Sbjct: 51 ITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRR 108
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 39.9 bits (94), Expect = 7e-06
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G G+GR +A+ G V ETA
Sbjct: 33 VTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAA 70
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 39.8 bits (94), Expect = 8e-06
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI-------------SEKGNNETAQHVKERG 48
ITG G GR A++ + GA ++ VDI S +ET + V+
Sbjct: 16 ITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN 72
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative;
1.87A {Rhodopseudomonas palustris}
Length = 252
Score = 40.0 bits (94), Expect = 8e-06
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+ G G IG E+A ++ + G TV + + ++ G
Sbjct: 12 VIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG 55
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 39.8 bits (94), Expect = 8e-06
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIG+ +A GA V+G SE G + ++ + G
Sbjct: 14 VTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNG 57
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 39.9 bits (94), Expect = 9e-06
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG GIG+ +A GA V + +TA + G
Sbjct: 34 VTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG 77
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 39.4 bits (93), Expect = 9e-06
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG GIG +A G+ V+ +E+ +K+
Sbjct: 19 ITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNY 62
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 39.5 bits (93), Expect = 1e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
ITG G+GR L ++ + GA V +D S + E
Sbjct: 10 ITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEV 47
>3s55_A Putative short-chain dehydrogenase/reductase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: NAD; 2.10A
{Mycobacterium abscessus}
Length = 281
Score = 39.4 bits (93), Expect = 1e-05
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNN------------ETAQHVKERG 48
ITG G+GR A+ GA + D E + ET V++ G
Sbjct: 15 ITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG 70
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 39.1 bits (92), Expect = 1e-05
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISE 34
ITG+ GIG L G TV+G+D +
Sbjct: 6 ITGSASGIGAALKELLARAGHTVIGIDRGQ 35
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 39.3 bits (92), Expect = 1e-05
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV----GVDISEKGNNETA 41
ITG G G+G+ +L++ GA VV G ++ +G N A
Sbjct: 13 ITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKA 53
Score = 32.0 bits (73), Expect = 0.005
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
ITG G G+G+E A + +GA VV
Sbjct: 327 ITGAGAGLGKEYAKWFAKYGAKVV 350
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 39.0 bits (92), Expect = 1e-05
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI-SEKGNNETAQHVKERGYK 50
+TG+ G+G+ +A + + GA +V + + TA+ K G
Sbjct: 10 VTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGIN 56
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc;
2.45A {Sinorhizobium meliloti}
Length = 260
Score = 39.1 bits (92), Expect = 2e-05
Identities = 12/32 (37%), Positives = 12/32 (37%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKG 36
ITG GIG L Y VV S K
Sbjct: 33 ITGASQGIGAGLVRAYRDRNYRVVATSRSIKP 64
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 38.9 bits (91), Expect = 2e-05
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV----GVDISEKGNNETA 41
+TG G G+GR AL + GA VV G D G +A
Sbjct: 14 VTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSA 54
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP
COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 38.8 bits (91), Expect = 2e-05
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG G GIG +A + HG V S A+ +
Sbjct: 32 ITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT 75
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 38.7 bits (91), Expect = 2e-05
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI-SEKGNNETAQHVKERGYK 50
+TG GIG +A + G + I +G + G +
Sbjct: 34 VTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGAR 80
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 38.3 bits (90), Expect = 3e-05
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG+ GIG +A GA +V + + G K
Sbjct: 9 VTGSTSGIGLGIAQVLARAGANIVLNGFGDPA--PALAEIARHGVK 52
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 38.4 bits (89), Expect = 3e-05
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
+TG GIG E+ Q S+G VV +E + +K ++N
Sbjct: 17 VTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHEN 63
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural
genomics, secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 38.2 bits (90), Expect = 3e-05
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV-GVDISEKGNNETAQHVKERGYKNFHNF 55
ITG GIGR +AL+ G + + + E A+ + RG
Sbjct: 6 ITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVL 57
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 38.0 bits (89), Expect = 3e-05
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG G G+G+ + S GA V TA+ + +
Sbjct: 31 ITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT 74
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 38.2 bits (89), Expect = 3e-05
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV----GVDISEKGNNETA 41
+TG G G+GRE AL + GA VV G S G ++ A
Sbjct: 24 VTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRA 64
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 37.9 bits (89), Expect = 3e-05
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG+ GIGR +A + S G+TV+ S + A+ + +
Sbjct: 12 VTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY 55
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 37.8 bits (89), Expect = 4e-05
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+TG GIGR +A + G V + + E AQ +
Sbjct: 7 VTGGSRGIGRAIAEALVARGYRVAIASRNPE---EAAQSLGAVPLP 49
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 37.6 bits (88), Expect = 4e-05
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETA 41
ITG+ GIG +A GA +V T
Sbjct: 30 ITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTV 66
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 37.5 bits (88), Expect = 5e-05
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
ITG GIG A ++ + GA V + +
Sbjct: 34 ITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA 71
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 37.5 bits (88), Expect = 5e-05
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGY 49
+TG GIG +A + + GA V E E A + + +
Sbjct: 32 VTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVF 76
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 37.5 bits (88), Expect = 6e-05
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+TG+ GIG+ +A + GA V+ E+ NET + ++ +
Sbjct: 15 VTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQY 58
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 37.2 bits (87), Expect = 6e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKG 36
+TG GIG + + GA V D + G
Sbjct: 33 VTGAAGGIGGAVVTALRAAGARVAVADRAVAG 64
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold,
rossmann fold, oxidoreductase; HET: NAP; 2.30A
{Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 37.5 bits (88), Expect = 6e-05
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATV-VGVDISEKGNNETAQHVKERGYK 50
+TG GIG+ +AL G V V S K E ++ ++ G +
Sbjct: 6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQ 52
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus
anthracis}
Length = 246
Score = 37.1 bits (87), Expect = 6e-05
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV-GVDISEKGNNETAQHVKERGYK 50
+TG GIGR +A+ GA VV +E+ NE +K+ G
Sbjct: 9 VTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSD 55
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 37.3 bits (87), Expect = 6e-05
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 5 ITGTGHGIGRELALQYC---SHGATVVGVDISEKGNNETAQHVKERG 48
+TG G GR LA Q S G+ ++ SE + + + +
Sbjct: 11 LTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ 57
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 37.2 bits (87), Expect = 7e-05
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETA 41
+TG+ GIG +A + GA +V + E
Sbjct: 9 VTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKV 45
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent
reductase, short chain dehydrogenase/reductase,
oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter
frateurii} PDB: 3ai2_A* 3ai1_A*
Length = 263
Score = 37.1 bits (87), Expect = 7e-05
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG+ GIG +A + GA +V V +E A+ +KE+
Sbjct: 12 ITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF 55
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 37.1 bits (87), Expect = 8e-05
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI-SEKGNNETAQHVKERGYK 50
+TG+ G+G+ A++ +G +V S+K ETA+ +++ G K
Sbjct: 9 VTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVK 55
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 36.7 bits (86), Expect = 9e-05
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATV-VGVDISEKGNNETAQHVKERGYK 50
+TG GIGR +ALQ G V V S++ + +K +G
Sbjct: 9 VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVD 55
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 36.5 bits (85), Expect = 1e-04
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISE 34
+ G +G + + V +D+ E
Sbjct: 12 VYGGRGALGSRCVQAFRARNWWVASIDVVE 41
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 36.3 bits (85), Expect = 1e-04
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVG-VDISEKGNNETAQHVKERGYK 50
+TG GIG + + G VV + + + K G+
Sbjct: 18 VTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFD 64
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 36.4 bits (85), Expect = 1e-04
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATV-VGVDISEKGNNETAQHVKERGYK 50
+TG GIGR +AL+ + GA V V S +E + G +
Sbjct: 33 VTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGE 79
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGN-NETAQHVKERG 48
+ G G IGR A+++ GA VV +++ G
Sbjct: 13 VAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG 57
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A
{Burkholderia pseudomallei 1710B}
Length = 269
Score = 36.4 bits (85), Expect = 1e-04
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGN-NETAQHVKERGYK 50
+TG G+G ++ + G V + + H ++ G
Sbjct: 30 VTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRD 76
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A*
1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 36.1 bits (84), Expect = 2e-04
Identities = 4/44 (9%), Positives = 10/44 (22%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
GIG + + + + + A+
Sbjct: 10 FVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP 53
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 36.0 bits (83), Expect = 2e-04
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGN-------NETAQHVKERGYK 50
ITG GIG+ +AL+ GA +V + + + A+ ++ G K
Sbjct: 50 ITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGK 102
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB:
3vc7_A
Length = 255
Score = 35.6 bits (83), Expect = 2e-04
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+ G HG+G + GA V+ +E +
Sbjct: 13 VIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIRE 50
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 35.2 bits (82), Expect = 3e-04
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG GIG +A + G VV + S++ + +
Sbjct: 12 ITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSN 55
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics
of infectious diseases; HET: NAD; 2.05A {Bacillus
anthracis str} PDB: 3i3o_A*
Length = 291
Score = 35.2 bits (82), Expect = 3e-04
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGN-NETAQHVKERGYK 50
ITG GIGR +++ + GA + + E+G+ NET Q+V++ G K
Sbjct: 52 ITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVK 98
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 35.2 bits (82), Expect = 3e-04
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 5 ITGTGH--GIGRELALQYCSHGATVVGVDIS-EKGNNETAQHV-KERGYK 50
+TG G+G E A GA V S +G E + + K G K
Sbjct: 25 VTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIK 74
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 35.4 bits (82), Expect = 3e-04
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVK 45
+ G +G + + +G TV+ +D+S ++ V
Sbjct: 8 VYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVD 48
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 34.8 bits (81), Expect = 4e-04
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV---GVDISEKGNNETAQHVKERG 48
I G +G A + +V N+ ++++G
Sbjct: 16 IAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG 62
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 34.9 bits (80), Expect = 4e-04
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+ +G A GA VV A V +R
Sbjct: 124 VLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF 167
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 242
Score = 34.9 bits (81), Expect = 5e-04
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHV 44
+TG G+GR AL + G VV +D+ +G +
Sbjct: 7 VTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEG 46
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 34.9 bits (81), Expect = 5e-04
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGN-------NETAQHVKERG 48
ITG GIG +AL+ GA V S N + A V G
Sbjct: 11 ITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG 61
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 34.5 bits (80), Expect = 6e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISE 34
+TG G G+GR L + G V +
Sbjct: 8 VTGAGSGLGRALTIGLVERGHQVSMMGRRY 37
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 34.5 bits (80), Expect = 6e-04
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
+TG G+G + GATV+G+D+ E A
Sbjct: 12 VTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAA 49
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 34.4 bits (79), Expect = 6e-04
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
TG GH +A + VV D++E ++ G++
Sbjct: 46 TGGGH-----VANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 86
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 34.4 bits (80), Expect = 7e-04
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
+T G+G AL+ +GA ++ + + A +
Sbjct: 12 VTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLV 55
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 34.5 bits (80), Expect = 7e-04
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV--GVDISEKGNNETAQHVKERGYK 50
+TG GIGR A+ Y GA V + E+ + ++E G K
Sbjct: 54 VTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRK 101
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 34.0 bits (78), Expect = 8e-04
Identities = 9/29 (31%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
G G G L G VGVD
Sbjct: 60 GCGEGW---LLRALADRGIEAVGVDGDRT 85
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 34.2 bits (79), Expect = 9e-04
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
ITG G+G A + GA+ V +D+ G A+
Sbjct: 17 ITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 54
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 34.0 bits (77), Expect = 0.001
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFH 53
G G L+ Y G V V+I + + ++ G +
Sbjct: 132 GPLPLTGILLSHVY---GMRVNVVEIEPDIAELSRKVIEGLGVDGVN 175
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 34.1 bits (79), Expect = 0.001
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKG 36
+TG GIG +A + + G V
Sbjct: 20 VTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 51
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; HET: SAH; 2.30A {Bacillus
cereus} PDB: 2gh1_A
Length = 284
Score = 33.8 bits (77), Expect = 0.001
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
G G+ +G L G+ G+D E E + + Y
Sbjct: 31 CGYGY-LGLVLM-PLLPEGSKYTGIDSGETLLAEARELFRLLPYD 73
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics;
2.50A {Mycobacterium thermoresistibile}
Length = 285
Score = 33.4 bits (77), Expect = 0.001
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGN-------NETAQHVKERG 48
I+G GIG +A + + GA V V S + + A+ ++E G
Sbjct: 14 ISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG 64
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 33.7 bits (77), Expect = 0.001
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 7 GTGHG-IGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
G G + ++ G G++IS+ + +E +K
Sbjct: 31 GAGGDLPPLSIFVED---GYKTYGIEISDLQLKKAENFSRENNFK 72
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 33.4 bits (77), Expect = 0.001
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQ 42
++G G+G + + G VV D++ + A
Sbjct: 35 VSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALAD 72
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 33.4 bits (77), Expect = 0.002
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKER 47
+TG GIG+ + S V ++ + + +KE+
Sbjct: 7 VTGVSRGIGKSIVDVLFSLDKDTVVYGVAR--SEAPLKKLKEK 47
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
ITG +G AL+ HG V+ +E + +++ G
Sbjct: 32 ITGASQRVGLHCALRLLEHGHRVIISYRTEH---ASVTELRQAG 72
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 33.2 bits (76), Expect = 0.002
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
G GH AL + + +GVD +++ + +E+G +N
Sbjct: 30 AGAGH-----TALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN 70
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas;
oxidoreductase; 1.99A {Streptomyces coelicolor}
Length = 253
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKG 36
+TG GIG +A + G V S +
Sbjct: 26 VTGGNRGIGLAIARAFADAGDKVAITYRSGEP 57
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 33.2 bits (76), Expect = 0.002
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
G G IG L+ G V+G D+
Sbjct: 56 GQGR-IGGYLS----KQGHDVLGTDLDP 78
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 33.4 bits (76), Expect = 0.002
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISE 34
GTG +AL + G + +D
Sbjct: 48 VGTGR-----IALPLIARGYRYIALDADA 71
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 33.1 bits (75), Expect = 0.002
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 7 GTGHGIG-RELALQYCSHGATVVGVDISEK 35
G+G + L+ V+G+D+S+
Sbjct: 64 ACGNGTQTKFLS----QFFPRVIGLDVSKS 89
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 33.0 bits (76), Expect = 0.002
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKE 46
+TG IGR +A++ G VV I + E A + +
Sbjct: 28 VTGAAKRIGRAIAVKLHQTGYRVV---IHYHNSAEAAVSLAD 66
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 33.0 bits (76), Expect = 0.002
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVG 29
+TG G GR +A + G TV+G
Sbjct: 10 VTGASSGFGRAIAEAAVAAGDTVIG 34
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 32.9 bits (75), Expect = 0.003
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
GTG G LA V G+D + ++ ++ G +N
Sbjct: 55 CGTG-GQTMVLAGHV---TGQVTGLDFLSGFIDIFNRNARQSGLQN 96
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 32.8 bits (75), Expect = 0.003
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVG 29
ITG G GR A G V
Sbjct: 10 ITGASSGFGRLTAEALAGAGHRVYA 34
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 32.7 bits (74), Expect = 0.003
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
G GHG A ++ A D S +
Sbjct: 56 GCGHG---PDAARFGPQAARWAAYDFSPE 81
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 32.5 bits (74), Expect = 0.003
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
+G G + LA Q ++ +D S+ N +++ + +
Sbjct: 52 SGPGA-LSIALAKQS---DFSIRALDFSKHMNEIALKNIADANLND 93
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 32.2 bits (74), Expect = 0.004
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 5 ITGTGHGIGRELALQYCSHGA-------TVVGVDISEKGNNETAQHVKERG 48
ITG G GIGR +AL++ +V + + + + G
Sbjct: 7 ITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG 57
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 32.4 bits (74), Expect = 0.004
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
G G LA V G+ IS N+ G
Sbjct: 71 GIG-KPAVRLATAR---DVRVTGISISRPQVNQANARATAAG 108
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 32.3 bits (73), Expect = 0.004
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 7 GTGHG-IGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIPIRQ 61
G G G I + L L V VDI+E + ++ E G + + F ++
Sbjct: 87 GAGIGRITKRLLLPLFRE---VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD 139
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative,
joint CE structural genomics; HET: NAD; 2.50A
{Thermotoga maritima} SCOP: c.2.1.2
Length = 249
Score = 32.1 bits (74), Expect = 0.004
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHV 44
+ GIGR +A GA V +E+ +
Sbjct: 24 VLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRY 63
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics,
PSI-2, protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 32.1 bits (73), Expect = 0.004
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEK 35
GTG+ L + G TV G++ S +
Sbjct: 54 VGTGN-----LTNKLLLAGRTVYGIEPSRE 78
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ;
1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 31.8 bits (73), Expect = 0.005
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
TG G GIGR +A++ GA+VV
Sbjct: 26 TTGAGRGIGRGIAIELGRRGASVV 49
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 32.2 bits (73), Expect = 0.005
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEK 35
G G+ +L+ G VGVDISE
Sbjct: 62 CGDGY-GTYKLS----RTGYKAVGVDISEV 86
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 31.7 bits (72), Expect = 0.005
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
GTG G LA + G+D+ ++ +
Sbjct: 56 GTG-GQTLFLADYV---KGQITGIDLFPDFIEIFNENAVKAN 93
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 31.7 bits (72), Expect = 0.007
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 11 GIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFH 53
G GR +L ++G V D + + N H
Sbjct: 42 GNGR-NSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLH 83
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe
grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 31.4 bits (72), Expect = 0.007
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKE 46
+TG G GIGRE+A++ G V+ ++ + E+A+ V
Sbjct: 34 VTGAGRGIGREMAMELGRRGCKVI---VNYANSTESAEEVVA 72
>2kw5_A SLR1183 protein; structural genomics, northeast structural
genomics consortium (NESG), PSI-2, protein structure
initiative, unknown function; NMR {Synechocystis} PDB:
3mer_A
Length = 202
Score = 31.4 bits (71), Expect = 0.007
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 7 GTGHGI-GRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
G G LA S G V VD S G + Q +E+G
Sbjct: 37 AEGEGRNACFLA----SLGYEVTAVDQSSVGLAKAKQLAQEKG 75
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 31.6 bits (71), Expect = 0.008
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 7 GTGHGIG-RELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFT 56
G G G ++A Q ++G D+S +TA+ +KE + N +
Sbjct: 44 GCGPGTATLQMA-QELKPFEQIIGSDLSA-TMIKTAEVIKEGSPDTYKNVS 92
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 31.4 bits (72), Expect = 0.008
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKE 46
ITG IG +A++ G VV + + + AQ +
Sbjct: 16 ITGGARRIGHSIAVRLHQQGFRVV---VHYRHSEGAAQRLVA 54
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 31.3 bits (71), Expect = 0.008
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 4 EITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIP 58
EI G G + H + +D+ + Q K + ++ I
Sbjct: 57 EI-GCAAGA---FTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDIL 107
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 31.2 bits (71), Expect = 0.008
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
+TG +GR +A + G V
Sbjct: 14 VTGAAKRLGRSIAEGLHAEGYAVC 37
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain
dehydrogenase/REDU SDR, fungi, oxidoreductase; HET:
GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A*
3qwi_A* 3itd_A
Length = 270
Score = 31.4 bits (72), Expect = 0.009
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
+TG+G GIG +A+ GA VV
Sbjct: 23 VTGSGRGIGAAVAVHLGRLGAKVV 46
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 31.4 bits (72), Expect = 0.009
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDI-SEKGNNETAQHVKERG 48
+TG GIG +A + S G TVV E A ++ G
Sbjct: 32 VTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG 76
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin
salvage, drug resistance; HET: NAP FE1; 2.61A
{Leishmania major} SCOP: c.2.1.2
Length = 328
Score = 31.3 bits (71), Expect = 0.009
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
+TG +GR +A + G V
Sbjct: 51 VTGAAKRLGRSIAEGLHAEGYAVC 74
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 31.0 bits (71), Expect = 0.010
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEK 35
+TG G+G + GA VV +DI +
Sbjct: 14 VTGGASGLGLATTKRLLDAGAQVVVLDIRGE 44
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural
genomics, protein structure initiati
nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Length = 272
Score = 31.0 bits (71), Expect = 0.010
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKER 47
+TG GIG + G V ++ N E A V
Sbjct: 31 VTGGSRGIGAAVCRLAARQGWRVG---VNYAANREAADAVVAA 70
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 30.9 bits (70), Expect = 0.011
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTI 57
G+G +++L+ S G +V G+DI+ + + G
Sbjct: 39 CGSG-----KISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA 85
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins
(A/B), NAD(P)-binding rossmann-fold structural
genomics, NPPSFA; HET: NAP; 2.20A {Thermus
thermophilus}
Length = 207
Score = 31.0 bits (71), Expect = 0.012
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 1 MRTEITGTGHGIGRELALQYCSHGATVVGV 30
MR ITG G+G A G ++
Sbjct: 1 MRVLITGATGGLGGAFARAL--KGHDLLLS 28
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 30.6 bits (69), Expect = 0.014
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
G G G R L ++ G ++ ++I+ N ++ + G +
Sbjct: 92 GYG-GAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLAD 132
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 30.7 bits (69), Expect = 0.016
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 5/29 (17%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISE 34
+GTG+ V +D S
Sbjct: 55 SGTGY-----WTRHLSGLADRVTALDGSA 78
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 30.3 bits (68), Expect = 0.018
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEK 35
G G G L +G VVGVDISE
Sbjct: 47 CGVG-GFSFLLE----DYGFEVVGVDISED 71
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 30.2 bits (68), Expect = 0.022
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEK 35
GTG + +L G VV VD S++
Sbjct: 63 GGTG-----KWSLFLQERGFEVVLVDPSKE 87
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 29.8 bits (68), Expect = 0.027
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKE 46
+TG GIG +A + GA V ++ E AQ V
Sbjct: 36 VTGGSRGIGAAIAKRLALEGAAVA---LTYVNAAERAQAVVS 74
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 30.0 bits (68), Expect = 0.028
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
+TG GIG L Q
Sbjct: 8 VTGANRGIGLGLVQQLVKDKNIRH 31
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 29.8 bits (67), Expect = 0.028
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 11 GIGRELALQYCSHGATVVGVDISEK 35
G G A + G V D S +
Sbjct: 53 GAGY-QAEAMLAAGFDVDATDGSPE 76
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 29.7 bits (67), Expect = 0.032
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
GTG L + GA V+G D +
Sbjct: 67 GTGQ-----LTEKIAQSGAEVLGTDNAA 89
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 29.4 bits (67), Expect = 0.033
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 7 GTGHG-IGRELALQYCSHGATVVGVDISEK 35
GTGH + + V ++ E+
Sbjct: 63 GTGHTAMM--ALMAEKFFNCKVTATEVDEE 90
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 29.5 bits (66), Expect = 0.034
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
GTG ++ + G V V+ S
Sbjct: 44 GTGG-----YSVALANQGLFVYAVEPSI 66
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 29.7 bits (67), Expect = 0.034
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
G G L +G V G++ + A+ KE+
Sbjct: 40 GCSSGA---LGAAIKENGTRVSGIEAFPEA----AEQAKEKLDH 76
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 29.5 bits (67), Expect = 0.034
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
ITG G+G A + GATV+
Sbjct: 21 ITGANSGLGAVTARELARRGATVI 44
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3,
oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 29.5 bits (67), Expect = 0.036
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 12 IGRELALQYCSHGATVVGVDISEK 35
IG ++ + HG V+GVDI+++
Sbjct: 22 IGLPTSIMFAKHGVDVLGVDINQQ 45
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 29.4 bits (66), Expect = 0.042
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
GTG S G + G++ + +
Sbjct: 51 GTGR-----WTGHLASLGHQIEGLEPATR 74
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 29.4 bits (66), Expect = 0.048
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
G G R S+ V+G+D+SEK
Sbjct: 53 GFGWF-CRWAHEHGASY---VLGLDLSEK 77
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A
{Bacillus anthracis str}
Length = 255
Score = 29.0 bits (66), Expect = 0.058
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
+TG GIGR +A + + GA V
Sbjct: 12 VTGASRGIGRAIAKRLANDGALVA 35
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.0 bits (65), Expect = 0.058
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
G+G + A + G T G+D+S + + +E G
Sbjct: 46 GSG-EMLCTWARDH---GITGTGIDMSSLFTAQAKRRAEELG 83
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 28.7 bits (64), Expect = 0.072
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
G G+ L +Y + G+D +
Sbjct: 43 GPGN-STELLTDRY--GVNVITGIDSDD 67
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 28.7 bits (65), Expect = 0.072
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGV 30
ITG G+G ELA Y + G
Sbjct: 6 ITGASSGLGAELAKLYDAEGKATYLT 31
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 28.5 bits (64), Expect = 0.076
Identities = 10/28 (35%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 5 ITGTGHGIGRELA---LQYCSHGATVVG 29
ITG GIG LA S V
Sbjct: 7 ITGCSSGIGLHLAVRLASDPSQSFKVYA 34
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein
structure initiative, PSI, structural genomics; 1.70A
{Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A
1zwl_A*
Length = 200
Score = 28.5 bits (64), Expect = 0.077
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 6 TGTGHGIGRELALQYCS-----HGATVVGVDISEKGNNETAQ 42
T + HG G+E HG V+G+ SE ET
Sbjct: 117 TASLHG-GQETTQLSMLLPLLHHGMLVLGIPYSEPALLETRG 157
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 28.7 bits (64), Expect = 0.084
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
G G A V+G+D+SE+
Sbjct: 54 GFGW-HCIYAAEHGAKK---VLGIDLSER 78
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 28.5 bits (64), Expect = 0.087
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGV 30
ITG G+G L + +
Sbjct: 26 ITGCNRGLGLGLVKALLNLPQPPQHL 51
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.4 bits (63), Expect = 0.088
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
GTG L G +V VD S+K
Sbjct: 67 GTGV-DSIMLV----EEGFSVTSVDASDK 90
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 28.1 bits (63), Expect = 0.097
Identities = 4/30 (13%), Positives = 7/30 (23%), Gaps = 5/30 (16%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEK 35
G G + +DI+
Sbjct: 26 CGNGF-----YCKYLLEFATKLYCIDINVI 50
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 28.2 bits (63), Expect = 0.10
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
G G G + +Y GA G+DI
Sbjct: 65 GLG-GGCMYINEKY---GAHTHGIDICSN 89
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 28.2 bits (63), Expect = 0.11
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 15 ELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFH 53
EL + VV ++I + + +KE
Sbjct: 84 ELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLG 122
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 28.3 bits (63), Expect = 0.12
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 9 GHGIG---RELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
G G G ++ G+ V GV +S + + +E
Sbjct: 125 GCGRGGSMVMAHRRF---GSRVEGVTLSAAQADFGNRRARELR 164
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 28.2 bits (62), Expect = 0.13
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 11 GIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNF 55
G G +L + GVDI+E N+ + + F
Sbjct: 74 GKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 118
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 28.1 bits (62), Expect = 0.13
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 7 GTGHG-IGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHN 54
G G G I + L + + ++ + E + + F
Sbjct: 101 GAGIGRITKNLLTKLYAT---TDLLEPVKHMLEEAKRELAGMPVGKFIL 146
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family,
rossmann-fold, short-chain dehydrogenase/reducta
ALLO-threonine dehydrogenase; 1.90A {Escherichia coli}
PDB: 3asv_A*
Length = 248
Score = 27.9 bits (63), Expect = 0.14
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGV 30
+TG G G + ++ G V+
Sbjct: 5 VTGATAGFGECITRRFIQQGHKVIAT 30
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 27.9 bits (62), Expect = 0.15
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
G G LA A + +DIS + + ++ ++ G KN
Sbjct: 47 GIGA-QTVILAKNN--PDAEITSIDISPESLEKARENTEKNGIKN 88
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 27.7 bits (61), Expect = 0.15
Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNF 55
G L C G +VG+D + + +
Sbjct: 128 GWM-SELLALDYSAC-PGVQLVGIDYDPEALDGATRLAAGHALAGQITL 174
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 27.8 bits (63), Expect = 0.15
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 7 GTGHG-IGRELALQYCSHGATVVGVDISEK 35
GTG G I LAL ++ VD
Sbjct: 117 GTGTGAIA--LALASERPDCEIIAVDRMPD 144
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta
structure, transcription; 2.90A {Sulfolobus tokodaii}
Length = 199
Score = 27.8 bits (62), Expect = 0.16
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 6 TGTGHGIGRELALQYCS-----HGATVVGVDISEKGNNETAQ 42
T HG G E + S G +V + +T
Sbjct: 116 ASTVHG-GHETTILTMSTYAYHFGMIIVPIGYGIPELFQTTT 156
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5
P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A*
3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 27.7 bits (62), Expect = 0.16
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 5 ITGTGHGIGRELALQYCS-HGATVV 28
+TG GIG + C VV
Sbjct: 9 VTGGNKGIGLAIVRDLCRLFSGDVV 33
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 27.9 bits (62), Expect = 0.16
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 11 GIGRELALQYCSHGATVVGVDISEK 35
G G L+ G VVG+D+ E+
Sbjct: 51 GTGI-PTLELAERGYEVVGLDLHEE 74
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 27.8 bits (62), Expect = 0.16
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
GTG G+++SE
Sbjct: 50 GTGT-HLEHFT----KEFGDTAGLELSE 72
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 27.9 bits (61), Expect = 0.16
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
G G G + L Y + T++GVDIS K
Sbjct: 729 GCGSGSLLDSLLDYPTSLQTIIGVDISPK 757
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 27.6 bits (61), Expect = 0.17
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
G G + G V +++S
Sbjct: 92 GMGR-LTFPFL----DLGWEVTALELST 114
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 27.5 bits (62), Expect = 0.18
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 1 MRTEITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
M+ + G G IG LA G ++GV + T + ER
Sbjct: 1 MKIGVVGLGL-IGASLAGDLRRRGHYLIGVSRQQ----STCEKAVERQ 43
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 27.7 bits (61), Expect = 0.19
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 4/48 (8%)
Query: 7 GTGHGIGRELALQYCSHGAT-VVGVDISEKGNNETAQHVKERGYKNFH 53
G G+ L+ + G V VD S +
Sbjct: 50 GCGNS---ALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWE 94
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 27.5 bits (62), Expect = 0.19
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 7 GTGHG-IGRELALQYCSHGATVVGVDISEK 35
GTG G I +++ G +V VD+S
Sbjct: 38 GTGSGCIA--VSIALACPGVSVTAVDLSMD 65
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 27.2 bits (61), Expect = 0.22
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVG 29
+TG GIG +A G VVG
Sbjct: 37 VTGASGGIGAAVARALVQQGLKVVG 61
>1wwz_A Hypothetical protein PH1933; structural genomics, pyrococcus
horikoshii OT3, riken struct genomics/proteomics
initiative, RSGI; HET: ACO; 1.75A {Pyrococcus
horikoshii} SCOP: d.108.1.1
Length = 159
Score = 27.4 bits (61), Expect = 0.22
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 9 GHGIGREL---ALQYCSHGATVVGVDISEKGNNETAQHVKER-GYK 50
G GIGR+L L + + + + EK N A ++ E+ G+K
Sbjct: 99 GKGIGRKLLITCLDFLGKYNDTIELWVGEK--NYGAMNLYEKFGFK 142
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 27.2 bits (60), Expect = 0.23
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 7 GTGHGI-GRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
G G G L+ G V D +E + ++
Sbjct: 128 GCGQGRNSLYLS----LLGYDVTSWDHNENSIAFLNETKEKEN 166
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 27.3 bits (61), Expect = 0.24
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 9 GHG-IGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
G G G + + G V+ VDI+E E
Sbjct: 13 GLGRFGGSIVKELHRMGHEVLAVDINE----EKVNAYASYATH 51
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 27.0 bits (60), Expect = 0.27
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 5/28 (17%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
GTG L C VD+S+
Sbjct: 47 GTG-----NLTENLCPKFKNTWAVDLSQ 69
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 26.9 bits (59), Expect = 0.28
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 9 GHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNF 55
G G G + + S VVG+DISE + + + +F
Sbjct: 74 GCGGGHD-VVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSF 119
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 26.8 bits (60), Expect = 0.29
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGY 49
+ G+ G L + + G V+ VD S+ E + +++ G+
Sbjct: 11 VIGSEA-AGVGLVRELTAAGKKVLAVDKSK----EKIELLEDEGF 50
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 27.2 bits (60), Expect = 0.30
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
G G+ A T G+D+S+
Sbjct: 95 GEGYY-THAFADAL--PEITTFGLDVSK 119
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 0.30
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 5 ITGTGHG-IGRELALQYCSHGATVV 28
ITG G G IG E+ GA VV
Sbjct: 481 ITGAGKGSIGAEVLQGLLQGGAKVV 505
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 27.1 bits (60), Expect = 0.31
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 7/45 (15%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
G+ G + H + V+ SE+ H + R
Sbjct: 50 GSFKGD---FTSRLQEHFNDITCVEASEEA----ISHAQGRLKDG 87
>2ehd_A Oxidoreductase, oxidoreductase, short-chain
dehydrogenase/reducta; rossman fold, structural
genomics, NPPSFA; 2.40A {Thermus thermophilus}
Length = 234
Score = 26.7 bits (60), Expect = 0.31
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISE 34
ITG GIG A + G V + E
Sbjct: 10 ITGASRGIGEATARLLHAKGYRVGLMARDE 39
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 27.1 bits (60), Expect = 0.32
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISE 34
GTG+ + VGV+ SE
Sbjct: 45 AGTGY-----WLRRL--PYPQKVGVEPSE 66
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 26.7 bits (60), Expect = 0.32
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 7 GTGHG-IGRELALQYCSHGATVVGVDISEK 35
GTG G IG +++ S A V D+S K
Sbjct: 131 GTGSGAIG--VSVAKFSD-AIVFATDVSSK 157
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 26.7 bits (60), Expect = 0.37
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGV 30
ITG GIG +A G +
Sbjct: 7 ITGASRGIGEAIARALARDGYALALG 32
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 26.8 bits (59), Expect = 0.37
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFH 53
G G+ V D+ E+ +T+Q + + G +N
Sbjct: 32 GNGN-----DTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTE 73
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 26.7 bits (60), Expect = 0.38
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKG 36
G G+ + + L + + GA +V D+++
Sbjct: 180 GLGN-VAKALCKKLNTEGAKLVVTDVNKAA 208
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 26.7 bits (59), Expect = 0.38
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 11 GIGRELALQYCSHGATVVGVDISEK 35
G G TV G+++S
Sbjct: 60 GTGM-HLRHLADSFGTVEGLELSAD 83
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 26.4 bits (59), Expect = 0.40
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGV 30
ITG G G A ++ G ++V
Sbjct: 26 ITGATSGFGEACARRFAEAGWSLVLT 51
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 26.4 bits (59), Expect = 0.44
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 5 ITGTGHGIGRELALQYCSH--GATVVGVDISE 34
+ G G G+G +A+Q GAT++GVD+ E
Sbjct: 176 VVGAGGGLG-TMAVQIAKAVSGATIIGVDVRE 206
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine
methyltransferase, structural genomics, PSI, protein
structure initiative; HET: SAH; 1.25A {Mus musculus}
PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Length = 252
Score = 26.7 bits (58), Expect = 0.44
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 9 GHGIGRELALQYCSHGATVVGVDISEKG 36
G E + G TVVGV+ISE G
Sbjct: 76 LCGKAIE-MKWFADRGHTVVGVEISEIG 102
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 26.4 bits (59), Expect = 0.54
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYK 50
+ G G +G LA GA ++ D E H G+
Sbjct: 180 VQGLGA-VGGSLASLAAEAGAQLLVADTDT----ERVAHAVALGHT 220
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 26.1 bits (58), Expect = 0.61
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDI 32
GTG G+ LA+ G +GVDI
Sbjct: 128 GTGSGV---LAIAAEKLGGKALGVDI 150
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 26.0 bits (58), Expect = 0.72
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
ITG GIG +A + GA ++
Sbjct: 9 ITGASGGIGEGIARELGVAGAKIL 32
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 26.1 bits (57), Expect = 0.73
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIPIRQ 61
G G G L L + GVD+S +K I + Q
Sbjct: 37 GCGEGNLLSL-LLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ 90
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 25.7 bits (57), Expect = 0.75
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEK 35
I G G +G ++A + G + S K
Sbjct: 144 IMGAGV-LGAKVAESLQAWGFPLRCWSRSRK 173
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 26.0 bits (58), Expect = 0.78
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 5 ITGTGHGIGRELALQYC-SHGATVVGVDISEKGNNETAQHVKERGYKNFHNFT 56
I+G G+G LA+QY + G V+G+D E + + G + F +FT
Sbjct: 175 ISGAAGGLG-SLAVQYAKAMGYRVLGIDGGE----GKEELFRSIGGEVFIDFT 222
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 25.6 bits (57), Expect = 0.81
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
ITG GIG +A ++ G ++
Sbjct: 21 ITGASSGIGEAIARRFSEEGHPLL 44
>1pjz_A Thiopurine S-methyltransferase; polymorphism,
S-adenosylmethionine, drug metabolism; NMR {Pseudomonas
syringae PV} SCOP: c.66.1.36
Length = 203
Score = 25.9 bits (56), Expect = 0.86
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 11 GIGRELALQYCSHGATVVGVDISEKG-------NNETAQHVKERGYKNFHNFTIPIRQ 61
G ++ G VVG ++SE E + +K + I I
Sbjct: 32 GKSQD-MSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G
joint center for structural genomics, JCSG; HET: MSE;
1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 25.9 bits (57), Expect = 0.87
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISE 34
GTG LA V GVD+SE
Sbjct: 43 GTGT-ATLLLA-----DHYEVTGVDLSE 64
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 25.8 bits (56), Expect = 0.95
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 7 GTGH---GIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIPIRQ 61
G G I ++ QY V+ S + + + V + N N +
Sbjct: 62 GAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK--TSNLENVKFAWHK 117
>2jah_A Clavulanic acid dehydrogenase; short-chain
dehydrogenase/reductase, lactamase inhibitor, AN
biosynthesis, NADPH, oxidoreductase; HET: MSE NDP;
1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Length = 247
Score = 25.6 bits (57), Expect = 1.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 5 ITGTGHGIGRELALQYCSHGATVV 28
ITG GIG A + GA V
Sbjct: 12 ITGASSGIGEATARALAAEGAAVA 35
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 25.3 bits (56), Expect = 1.0
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 1 MRTEITGTGHGIGRELALQYCSHGATVVGV 30
M+ + G +G + + A V+
Sbjct: 4 MKILLIGASGTLGSAVKERL-EKKAEVITA 32
>2r7h_A Putative D-alanine N-acetyltransferase of GNAT FA; putative
acetyltransferase of the GNAT family; 1.85A
{Desulfovibrio desulfuricans subsp}
Length = 177
Score = 25.1 bits (55), Expect = 1.2
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 9 GHGIGREL---ALQYC-SHGATVVGVDISEKGNNETAQHVKER-GYK 50
G+GR L + G ++ + S + ER G+
Sbjct: 108 HSGLGRALLAEVVHDVRLTGGRLLFAETSGIRKYAPTRRFYERAGFS 154
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 25.3 bits (56), Expect = 1.2
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 8/31 (25%)
Query: 7 GTGHGIGRELALQYCSH---GATVVGVDISE 34
G +Q T+VG+ S+
Sbjct: 181 GLAV-----YTIQILKALMKNITIVGISRSK 206
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 25.3 bits (56), Expect = 1.3
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 1 MRTEITGTGHG-IGRELALQYCSHGATVVGVD 31
+ ITG G IG +A G VVG+D
Sbjct: 22 KKVFITG-ICGQIGSHIAELLLERGDKVVGID 52
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 25.3 bits (56), Expect = 1.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEK 35
I GTG IG+ +A G V+GV S +
Sbjct: 145 ILGTGS-IGQHIAHTGKHFGMKVLGVSRSGR 174
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 25.0 bits (55), Expect = 1.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 1 MRTEITGTGHG-IGRELALQYCSHGATVVGVDISEKGN 37
++ ITG G I +A + G V+ D + +
Sbjct: 30 LKISITG-AGGFIASHIARRLKHEGHYVIASDWKKNEH 66
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 25.1 bits (55), Expect = 1.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
GT G+ + TVV D++ +
Sbjct: 31 GTSTGV----ITEQLRKRNTVVSTDLNIR 55
>3e9n_A Putative short-chain dehydrogenase/reductase; structural
genomics, unknown function, oxidoreductase, PSI- 2;
2.40A {Corynebacterium glutamicum}
Length = 245
Score = 24.8 bits (55), Expect = 1.7
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVG 29
+TG G+G E+
Sbjct: 10 VTGATGGMGIEIVKDLSRDHIVYAL 34
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis}
PDB: 3jwj_A
Length = 217
Score = 24.9 bits (54), Expect = 1.7
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIPIRQ 61
G G G + L S + GVD+S + + + + + Q
Sbjct: 37 GCGQGNLLK-ILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima}
SCOP: c.66.1.41
Length = 219
Score = 24.8 bits (54), Expect = 1.7
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 9/30 (30%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEK 35
GTG + +GV+ SE+
Sbjct: 56 VGTGR---------FAVPLKIKIGVEPSER 76
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB:
3epp_A*
Length = 313
Score = 24.9 bits (53), Expect = 1.7
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 11 GIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIPI 59
G G +L +V DI++ + Q ++ + +
Sbjct: 44 GKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSA 92
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 24.8 bits (55), Expect = 1.9
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 1 MRTEITGTGHG-IGRELALQYCSHGATVVGVDISEKGNNE 39
++ +TG G G +G+ + + G T + + S
Sbjct: 3 LKIAVTG-GTGFLGQYVVESIKNDGNTPIILTRSIGNKAI 41
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 24.6 bits (54), Expect = 2.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 5 ITGTGHG-IGRELALQYCSHGATVVGVDISEKGNNE 39
+TG G +G + + V DI + G E
Sbjct: 7 VTG-AAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAE 41
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 24.7 bits (53), Expect = 2.1
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEK 35
GTG L +G + ++ +
Sbjct: 73 GTGASC-IYPLLGATLNGWYFLATEVDDM 100
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 24.5 bits (53), Expect = 2.1
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNF 55
G G G E G +GVDI+E + + + + +
Sbjct: 49 GCGRG---EFLELCKEEGIESIGVDINE----DMIKFCEGKFNVVKSDA 90
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 24.5 bits (52), Expect = 2.2
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 7 GTGHGIGREL-ALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNFHNF 55
G G ++G+D S+ QH+ +
Sbjct: 66 GCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEI 115
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure
initiative; 2.60A {Corynebacterium glutamicum atcc
13032}
Length = 341
Score = 24.6 bits (54), Expect = 2.3
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGY 49
I G G IG L + +V G + S A+ + G+
Sbjct: 13 ILGLGL-IGGSLLRDLHAANHSVFGYNRSR----SGAKSAVDEGF 52
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 24.6 bits (54), Expect = 2.4
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 13 GRELALQYCSHGATVVGVDISEKGNNET-AQHVKERGYKNFHNFT 56
G LAL G V + + + E + N F
Sbjct: 13 GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFE 57
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN;
HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A*
2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Length = 198
Score = 24.3 bits (53), Expect = 2.7
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 6 TGTGHGIGRELALQYCS-----HGATVVGVDISEKGNNETAQ 42
+ TG G G+E + HG +V + + + + +Q
Sbjct: 112 SSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQ 153
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 24.2 bits (53), Expect = 2.7
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 5 ITGTGHGIGRELALQYCSHGAT--VVGVDISEK 35
+ G G+ +G A+ + V+G + K
Sbjct: 23 VLGMGY-VGIPAAVLFADAPCFEKVLGFQRNSK 54
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 24.4 bits (53), Expect = 2.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 6 TGTGHGIGRELALQYCSHGATVVGVDISEK 35
GTG + L +Y AT VD+SEK
Sbjct: 53 AGTG-LLSAFLMEKY--PEATFTLVDMSEK 79
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 24.3 bits (52), Expect = 2.8
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERG 48
I G G +G + + + ++I+ +G ++ G
Sbjct: 16 ILGAGGKMGARITRKIHDSAHHLAAIEIAPEG----RDRLQGMG 55
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 24.2 bits (53), Expect = 3.2
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 7 GTGHGIG 13
GTGHG+G
Sbjct: 486 GTGHGVG 492
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 24.1 bits (53), Expect = 3.6
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 5 ITGTGHGIGRELALQYCSH--GATVVGVDISEK 35
+ G G G+G + +Q A V+ VD+ +
Sbjct: 177 VIGVG-GLG-HVGIQILRAVSAARVIAVDLDDD 207
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 23.8 bits (52), Expect = 4.0
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 17 ALQYCSHGATVVGVDISEKGNNETAQHVK 45
AL+ GA + VD + Q
Sbjct: 229 ALRAARKGAYALAVDKDLEALGVLDQAAL 257
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 23.5 bits (51), Expect = 4.6
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
G G L+ G V +D+ E+ N + V + G KN
Sbjct: 47 GAGF-YLPYLSKMVGEKG-KVYAIDVQEEMVNYAWEKVNKLGLKN 89
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 23.8 bits (52), Expect = 4.8
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 5 ITGTGHG-IGRELALQYCSHGATVVGVD 31
ITG G IG L + V+G+D
Sbjct: 30 ITG-VAGFIGSNLLEKLLKLNQVVIGLD 56
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 23.7 bits (52), Expect = 4.8
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 8 TGHGIGREL 16
GHGIGR +
Sbjct: 203 GGHGIGRSM 211
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 23.5 bits (51), Expect = 4.8
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 5 ITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETA 41
+ G G +G A + G + +D + E+
Sbjct: 27 VGGYG-KLGGLFARYLRASGYPISILDREDWAVAESI 62
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 23.6 bits (51), Expect = 4.9
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 21 CSHGATVVGVDISEKGNNETAQHVKERGYKNFHNFTIPI 59
+H + + E +T N TIPI
Sbjct: 29 LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET:
SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 23.7 bits (51), Expect = 5.0
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 7 GTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKN 51
G+G V G DI +K T + + + +
Sbjct: 30 TCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLID 74
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A
{Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Length = 435
Score = 23.5 bits (51), Expect = 5.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 21 CSHGATV 27
CSHGATV
Sbjct: 360 CSHGATV 366
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 23.4 bits (51), Expect = 6.0
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 5 ITGTGHG-IGRELALQYCSHGATVVGVD 31
ITG G IG L VVG+D
Sbjct: 32 ITG-VAGFIGSNLLETLLKLDQKVVGLD 58
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 23.4 bits (51), Expect = 6.0
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 7 GTGHGIGRE 15
TGHGIG
Sbjct: 307 RTGHGIGLC 315
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; HET: PE8; 2.00A
{Archaeoglobus fulgidus}
Length = 293
Score = 23.3 bits (51), Expect = 6.8
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 7 GT-GHGIGRELALQYCSHGATVVGVDISEK 35
G G GI + VV D+SEK
Sbjct: 21 GLMGRGIA-----IAIASKHEVVLQDVSEK 45
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 23.3 bits (51), Expect = 7.1
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 1 MRTEITGTGHG-IGRELALQYCSHGATVVGVD 31
R ITG G G IG LA + G V +D
Sbjct: 8 HRILITG-GAGFIGGHLARALVASGEEVTVLD 38
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 22.9 bits (50), Expect = 7.4
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 7 GTGHGIGRE 15
TGHGIG E
Sbjct: 287 STGHGIGLE 295
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 22.8 bits (50), Expect = 7.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 8 TGHGIGREL 16
GHG+GREL
Sbjct: 179 VGHGVGREL 187
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 23.0 bits (50), Expect = 8.4
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 7 GTGHGIGRE 15
GHGIG E
Sbjct: 290 SLGHGIGLE 298
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 23.0 bits (50), Expect = 9.3
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 7 GTGHGIGRE 15
TGHG+G +
Sbjct: 287 RTGHGLGLD 295
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 23.0 bits (50), Expect = 9.3
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 5 ITGTGHGIGRELALQYC-SHGATVVGVDISEK 35
+ G G IG +++ ++GA VV S +
Sbjct: 174 VIGAG-PIGL-VSVLAAKAYGAFVVCTARSPR 203
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 22.9 bits (50), Expect = 9.4
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 7 GTGHGIGRE 15
GHG+G E
Sbjct: 284 SLGHGVGLE 292
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 22.7 bits (49), Expect = 9.4
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 1 MRTEITGTGHGIGRELALQYCSHGATVVGVDISEKGNNETAQHVKERGYKNF----HNFT 56
R ITG +G L + G V VD G +H G++NF H+
Sbjct: 28 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW--IGHENFELINHDVV 85
Query: 57 IPIR 60
P+
Sbjct: 86 EPLY 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 952,589
Number of extensions: 43781
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 310
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)