RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1491
(391 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 271 bits (694), Expect = 2e-86
Identities = 127/375 (33%), Positives = 177/375 (47%), Gaps = 81/375 (21%)
Query: 8 LRGA---SEGNKYYAFRGIPYAEPPLNEFRFQRPKRRYLDGDIHAVKNGNPCLQPSPNDP 64
+RG +G YAF GIPYA+PP+ E RF++P+
Sbjct: 10 VRGLRVTVDGGPVYAFLGIPYAKPPVGELRFKKPQ------------------------- 44
Query: 65 KKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQP---SPNDPKKVVG-DEDCL 120
P P G + A K G C Q K G EDCL
Sbjct: 45 ----------------PPEP----WTGVLDATKYGPACPQNNDLGSEMWNKNTGMSEDCL 84
Query: 121 TLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSG---LQYDPNDLVMKNTVVVTVQYR 177
LNVYTPK + LPV+ WIHGGG++ GS P+ ++ VVVT+ YR
Sbjct: 85 YLNVYTPK----LASESKKLPVMVWIHGGGFQSGSASLDDYDGPDLAASEDVVVVTINYR 140
Query: 178 LGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLS 237
LG+LGFLS+ +LPGN GLLD AL W + I FGGDP+ +T G+ +GA++ LL
Sbjct: 141 LGALGFLSTGDSELPGNAGLLDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLL 200
Query: 238 LSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVCS-DMTGVELVKCLQELS 296
LS + + MSGSALS +A+ P + K + + C + + EL++CL++ S
Sbjct: 201 LSPASRGLFHRAILMSGSALSPWAITSNPRQRAKRLAKL-LGCPGEDSSAELLECLRKKS 259
Query: 297 PEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITSTN 356
EE++ D + ++ GF GPVV+G+ FLP E +L+ S
Sbjct: 260 AEELL----DAQLLLLEEVGFFPF-------GPVVDGD----FLPKDPE----ELLKSGW 300
Query: 357 KTDKIPMLTGVTKQE 371
K+P+L GVT E
Sbjct: 301 FN-KVPLLIGVTSDE 314
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 238 bits (609), Expect = 5e-74
Identities = 121/378 (32%), Positives = 172/378 (45%), Gaps = 77/378 (20%)
Query: 4 HHSALRGASEGNKYYAFRGIPYAEPPLNEFRFQRPKRRYLDGDIHAVKNGNPCLQPSPND 63
+ +RG EG Y+F GIPYAEPP+ + RF+ P+
Sbjct: 5 PNGKVRGVDEG-GVYSFLGIPYAEPPVGDLRFKEPQ------------------------ 39
Query: 64 PKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPN----DPKKVVGDEDC 119
P + D L+ + C+Q K+ G EDC
Sbjct: 40 PYEPWSD----VLDATSY-----------------PPSCMQWDQLGGGLWNAKLPGSEDC 78
Query: 120 LTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMKNT--VVVTVQYR 177
L LNVYTPK + LPV+ WIHGGG+ GSG Y + L + +VV++ YR
Sbjct: 79 LYLNVYTPKNTKPGNS----LPVMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYR 134
Query: 178 LGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLS 237
LG LGFLS+ +LPGN GL D AL W + I FGGDP+ +T G+ +G ++ LL
Sbjct: 135 LGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLL 194
Query: 238 LSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKCLQELSP 297
LS + ++ SGSALS +A+ K + R C+D + EL+ CL+ S
Sbjct: 195 LSPDSKGLFHRAISQSGSALSPWAIQENARGRAKRLARLLG-CNDTSSAELLDCLRSKSA 253
Query: 298 EEIVLSDTDIESSNIQNGGFVSGLAELLTP-GPVVEGEDDEWFLPNLLENSAMDLITSTN 356
EE++ + + P GPVV+G+ F+P+ E +LI
Sbjct: 254 EELLDA----------TRKLLLFSYSPFLPFGPVVDGD----FIPDDPE----ELIKE-G 294
Query: 357 KTDKIPMLTGVTKQETGT 374
K K+P++ GVTK E G
Sbjct: 295 KFAKVPLIIGVTKDEGGY 312
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 155 bits (394), Expect = 9e-43
Identities = 99/365 (27%), Positives = 142/365 (38%), Gaps = 91/365 (24%)
Query: 20 FRGIPYAEPPLNEFRFQRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVY 79
+ GIPYA PP+ E RF+RP P
Sbjct: 23 WLGIPYAAPPVGELRFRRP-------------------VP-------------------P 44
Query: 80 TPKRPKRRYLDGDIHAVKNGNPCLQPSPNDP--KKVVGDEDCLTLNVYTPKIPTQNDPNP 137
P R A + G C QP + G EDCL LN++ P++P +
Sbjct: 45 EPWSGVR-------DATQFGPACPQPFNRMGSGEDFTGSEDCLYLNIWAPEVPAEK---- 93
Query: 138 ELLPVIFWIHGGGYRRGSGLQ--YDPNDLVMKNT-VVVTVQYRLGSLGFLSSKQ----KD 190
LPV+ +IHGGGY GSG + YD + L + VVV+V YRLG+LGFL
Sbjct: 94 --LPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDA 151
Query: 191 LPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSLSKLTSSWVQGIV 250
N+GLLD AL W R I+ FGGDP +T G+ +GA++ + L +
Sbjct: 152 FASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAI 211
Query: 251 AMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVK--CLQELSPEEIV-LSDTDI 307
A+SG+A S + K+ + G+ L+ LS E++V I
Sbjct: 212 ALSGAA--------SRVTSREEAREKAAAFARALGIPEATLDKLRALSAEDLVKARLPLI 263
Query: 308 ESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITSTNKTDKIPMLTGV 367
+ + GPV+ + LP A+ S +P++ G
Sbjct: 264 GRTF-----------GAVPYGPVL----GDSLLP-RDPLEAIAQGRSH----GVPLMIGT 303
Query: 368 TKQET 372
E
Sbjct: 304 NHDEG 308
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 65.3 bits (159), Expect = 7e-12
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 104 QPSPNDPKKVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPND 163
SP D D + + VY P + PV+ ++HGGG+ GS +D
Sbjct: 48 ATSPEDVALAGPSGDGVPVRVYRP-----DRKAAATAPVVLYLHGGGWVLGSLRTHD--A 100
Query: 164 LVMK-----NTVVVTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDP 218
LV + VVV+V YRL + P + D +A W R G DP
Sbjct: 101 LVARLAAAAGAVVVSVDYRLAP-------EHPFPAALE--DAYAAYRWLRANAAELGIDP 151
Query: 219 NKITTAGQGSGASAAMLLSLS 239
++I AG +G A+ L+L+
Sbjct: 152 SRIAVAGDSAGGHLALALALA 172
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 48.0 bits (115), Expect = 2e-06
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 143 IFWIHGGGYRRGSGLQYDP--NDLV-MKNTVVVTVQYRLGSLGFLSSKQKDLPGNVGLLD 199
+ + HGGG+ GS +D L VVV+V YRL + + P + D
Sbjct: 1 LVYFHGGGFVLGSADTHDRLCRRLAAAAGAVVVSVDYRL-------APEHPFPA--AIED 51
Query: 200 IASALHWTRHYIQNFGGDPNKITTAGQGSGA--SAAMLLSLSKLTSSWVQGIVAMS 253
+AL W + G DP++I AG +G +AA+ L G V +
Sbjct: 52 AYAALRWLAEHAWELGADPSRIAVAGDSAGGNLAAAVALRARDEGLPLPAGQVLIY 107
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 37.4 bits (87), Expect = 0.010
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 119 CLTLNVYTP--KIPTQ-NDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMK------NT 169
V TP ++ T+ P P+ +F++HGGG+ G+ D +D +M+
Sbjct: 57 TRAYMVPTPYGQVETRLYYPQPDSQATLFYLHGGGFILGN---LDTHDRIMRLLASYSGC 113
Query: 170 VVVTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSG 229
V+ + Y L S + P + +I + + + +++G + ++I AG +G
Sbjct: 114 TVIGIDYTL-------SPEARFP--QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAG 164
Query: 230 ASAAM 234
A A+
Sbjct: 165 AMLAL 169
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 36.4 bits (84), Expect = 0.028
Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 9/142 (6%)
Query: 129 IPTQNDPNPELLPVIFWIHGG-GYRRGSGLQYDPNDLVMKNTVVVTVQYRLGSLGFLSSK 187
P DP + P+I +IHGG + G + L V+ YR GS G+
Sbjct: 384 KPPGFDPRKKY-PLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYR-GSTGYGREF 441
Query: 188 QKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGS--GASAAMLLSLSKLTSSW 245
+ G+ G +D+ + ++ DP +I G GS G + + T +
Sbjct: 442 ADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITG-GSYGGYMTLLAAT---KTPRF 497
Query: 246 VQGIVAMSGSALSSFAVDYRPE 267
+ G + +
Sbjct: 498 KAAVAVAGGVDWLLYFGESTEG 519
>gnl|CDD|220701 pfam10340, DUF2424, Protein of unknown function (DUF2424). This is
a family of proteins conserved in yeasts. The function
is not known.
Length = 374
Score = 31.7 bits (72), Expect = 0.64
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 124 VYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMKNTV 170
+ K+P +P++ P++ + HGGG+ L+ P LV N +
Sbjct: 108 FWLRKVPE--TFDPKVDPILLYYHGGGF----ALKLIPVTLVFLNNL 148
>gnl|CDD|220960 pfam11060, DUF2861, Protein of unknown function (DUF2861). This
bacterial family of proteins has no known function.
Length = 256
Score = 31.2 bits (71), Expect = 0.66
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 189 KDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSLSKLTSSWVQG 248
K L V L D + + R +IQ+ G +++ + ++ ++ + WV
Sbjct: 57 KSLDSKV-LPDWIIGVTFIRKFIQSPGRYQYRLSIENL----TQPLITDIA--FTKWVDT 109
Query: 249 IVAMSGSALSSFAVDYRPEESYK 271
+V SA SS +Y ESY
Sbjct: 110 LV----SADSSPTNEYTYVESYD 128
>gnl|CDD|237344 PRK13306, ulaD, 3-keto-L-gulonate-6-phosphate decarboxylase;
Provisional.
Length = 216
Score = 31.1 bits (71), Expect = 0.68
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 250 VAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKCLQELSPEEIVLSDTDI 307
+A+ L S D + ++ T+ G++ V+ L+ L P++I+++DT I
Sbjct: 8 IALDNQDLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALYPDKIIVADTKI 65
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 30.6 bits (70), Expect = 1.2
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 281 SDMTGVELVKCLQELSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEW-- 338
D +E K L+ L P IV S+ ++E NG V G P VVE E++E
Sbjct: 186 EDEEEIEENKKLKSLIPFAIVGSNEEVEV----NGKKVRGRK---YPWGVVEVENEEHCD 238
Query: 339 --FLPNLLENSAM-DLITSTNK 357
L NLL + + DL +T+
Sbjct: 239 FVKLRNLLIRTHLQDLKETTHN 260
>gnl|CDD|218958 pfam06252, DUF1018, Protein of unknown function (DUF1018). This
family consists of several bacterial and phage proteins
of unknown function.
Length = 119
Score = 28.4 bits (64), Expect = 2.5
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 267 EESY----KNVTRKSTVCSDMTGVELVKCLQEL 295
+++Y VT K++ D+T EL K L L
Sbjct: 3 DDTYRALLSRVTGKTS-AKDLTDAELQKVLDHL 34
>gnl|CDD|222662 pfam14300, DUF4375, Domain of unknown function (DUF4375). This
family of proteins is found in bacteria. Proteins in
this family are typically between 156 and 204 amino
acids in length. There is a single completely conserved
residue G that may be functionally important.
Length = 123
Score = 28.3 bits (64), Expect = 2.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 292 LQELSPEEIVLSDTDIESSNIQNGGFV 318
+ +L+ E+ L I S + NGGFV
Sbjct: 3 MSQLNDEQRTLLAYWILDSEVNNGGFV 29
>gnl|CDD|177859 PLN02209, PLN02209, serine carboxypeptidase.
Length = 437
Score = 29.6 bits (66), Expect = 2.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 132 QNDPNPELLPVIFWIHGG-GYRRGSGLQYDPNDLVMKNTV 170
++D NP+ P+I W++GG G SGL ++ L +KN V
Sbjct: 60 KSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKV 99
>gnl|CDD|227467 COG5138, COG5138, Uncharacterized conserved protein [Function
unknown].
Length = 168
Score = 28.7 bits (64), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 159 YDPNDLVMKNT-VVVTVQYRLGSLGFLSSKQKDLPGN 194
YD +D+++ + + T ++++ LGFL + + LP N
Sbjct: 4 YDIDDILLGESRIPCTFKHKIPGLGFLGPRGRILPEN 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,292,657
Number of extensions: 1971038
Number of successful extensions: 1030
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 20
Length of query: 391
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 292
Effective length of database: 6,546,556
Effective search space: 1911594352
Effective search space used: 1911594352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.8 bits)