RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1491
(391 letters)
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 268 bits (688), Expect = 2e-85
Identities = 96/382 (25%), Positives = 148/382 (38%), Gaps = 81/382 (21%)
Query: 8 LRG----ASEGNKYYAFRGIPYAEPPLNEFRFQRPKRRYLDGDIHAVKNGNPCLQPSPND 63
+RG A Y +FRG+PYA+ PL E RF+ + P +
Sbjct: 17 IRGLKRRAEGNKSYASFRGVPYAKQPLGELRFKELQ---------------------PLE 55
Query: 64 PKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPS---PNDPKKVVGDEDCL 120
P ++ A + G C Q + E C+
Sbjct: 56 P------------------------WQDELDATQEGPVCQQTDVLYGRIMRPRGMSEACI 91
Query: 121 TLNVYTPKIPTQNDPNP----ELLPVIFWIHGGGYRRGSG--LQYDPNDLVMKNTVVVTV 174
N++ P D LPV+ +IHGGG+ GSG + P LV K+ +V+T
Sbjct: 92 HANIHVPYYALPRDAADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITF 151
Query: 175 QYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAM 234
YRL GFLS +PGN GL D+ + L W + FGG P+ +T GQ +GA+A
Sbjct: 152 NYRLNVYGFLSLNSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATH 211
Query: 235 LLSLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRK--STV-CSDMTGVELVKC 291
+LSLSK + + MSG++ S+F + + + + + + E+ +
Sbjct: 212 ILSLSKAADGLFRRAILMSGTSSSAFFTTNPVFA--QYINKLFVTNIGITATDPEEIHQK 269
Query: 292 LQELSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDD--EWFLPNLLENSAM 349
L E+ E++ ++ + L T PVVE + L
Sbjct: 270 LIEMPAEKLNEANRFLLEQF-----------GLTTFFPVVESPINGVTTILD----GDPE 314
Query: 350 DLITSTNKTDKIPMLTGVTKQE 371
LI IP++ G T E
Sbjct: 315 QLIAKGR-GKHIPLIIGFTDAE 335
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 268 bits (686), Expect = 7e-85
Identities = 112/363 (30%), Positives = 156/363 (42%), Gaps = 54/363 (14%)
Query: 12 SEGNKYYAFRGIPYAEPPLNEFRFQRPKR-RYLDGDIHAVKNGNPCLQPSPNDPKKVVGD 70
F G+PYA PP E RFQ P+ +A + C Q + V
Sbjct: 30 EILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQFAPVCPQNIIDGRLPEVML 89
Query: 71 EDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVYTPKIP 130
T N+ EDCL LN+Y P
Sbjct: 90 PVWFTNNLDVVS---------------------------SYVQDQSEDCLYLNIYVPTED 122
Query: 131 TQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVM-KNTVVVTVQYRLGSLGFLSSKQK 189
D PV+ +IHGG Y G+G YD + L N +V+TV YRLG LGFLS+ +
Sbjct: 123 DIRDSG-GPKPVMVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNYRLGVLGFLSTGDQ 181
Query: 190 DLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSLSKLTSSW-VQG 248
GN GLLD+ AL WT I FGGDP +IT G G+G S LL+LS + Q
Sbjct: 182 AAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQR 241
Query: 249 IVAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKCLQELSPEEIVLSDTDIE 308
+A SG+ALSS+AV ++P + + + K C+ VELV+CLQ+ +E+V D
Sbjct: 242 AIAQSGTALSSWAVSFQPAKYARILATKVG-CNVSDTVELVECLQKKPYKELVDQDVQPA 300
Query: 309 SSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITSTNKTDKIPMLTGVT 368
+I F GPV++G+ +P + L+ + ++ GV
Sbjct: 301 RYHI---AF----------GPVIDGD----VIP----DDPQILMEQ-GEFLNYDIMLGVN 338
Query: 369 KQE 371
+ E
Sbjct: 339 QGE 341
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 266 bits (683), Expect = 9e-85
Identities = 94/360 (26%), Positives = 143/360 (39%), Gaps = 51/360 (14%)
Query: 14 GNKYYAFRGIPYAEPPLNEFRFQRPKR-RYLDGDIHAVKNGNPCLQPSPNDPKKVVGDED 72
F GIP+A+PPL RF P+ +A C Q
Sbjct: 26 AQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNATSYPPMCTQDPK----------- 74
Query: 73 CLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVYTPKIPTQ 132
L + + + EDCL LN+YTP T+
Sbjct: 75 -----------------------AGQLLSELFTNRKENIPLKLSEDCLYLNIYTPADLTK 111
Query: 133 NDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVM-KNTVVVTVQYRLGSLGFLSSKQKDL 191
+ LPV+ WIHGGG G+ YD L +N VVVT+QYRLG GF S+ +
Sbjct: 112 KNR----LPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHS 167
Query: 192 PGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSLSKLTSSWVQGIVA 251
GN G LD +AL W + I +FGG+P +T G+ +G + +L LS L + ++
Sbjct: 168 RGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAIS 227
Query: 252 MSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKCLQELSPEEIVLSDTDIESSN 311
SG AL+S V + + C T +V CL++ + EE++ + ++ +
Sbjct: 228 ESGVALTSVLVKKGDVKPLAEQIAITAGCKTTTSAVMVHCLRQKTEEELLETTLKMKFLS 287
Query: 312 IQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITSTNKTDKIPMLTGVTKQE 371
+ G P++ D L + +L +P + G+ KQE
Sbjct: 288 LDLQGDP------RESQPLLGTVIDGMLLL----KTPEELQAE-RNFHTVPYMVGINKQE 336
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 261 bits (668), Expect = 4e-82
Identities = 87/378 (23%), Positives = 148/378 (39%), Gaps = 84/378 (22%)
Query: 8 LRGASE-----GNKYYAFRGIPYAEPPLNEFRFQRPKRRYLDGDIHAVKNGNPCLQPSPN 62
+ G ++ G+ F+GIP+A P ++P+
Sbjct: 13 VEGVNKKLSLFGDSVDIFKGIPFAAAPK---ALEKPE----------------------- 46
Query: 63 DPKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTL 122
G + A CLQ + G+EDCL L
Sbjct: 47 ------------------RHPG----WQGTLKAKSFKKRCLQATLTQDS-TYGNEDCLYL 83
Query: 123 NVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQ--------YDPNDLVM-KNTVVVT 173
N++ P+ + + LPV+ WI+GG + G+ YD ++ N +VVT
Sbjct: 84 NIWVPQGRKEVSHD---LPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVT 140
Query: 174 VQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAA 233
YR+G LGFLS+ +LPGN GL D A+ W + I+ FGGDP++IT G+ +G ++
Sbjct: 141 FNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASV 200
Query: 234 MLLSLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKCLQ 293
L +LS ++ ++ SG L +A+ P K + K C ++ CL+
Sbjct: 201 SLQTLSPYNKGLIKRAISQSGVGLCPWAIQQDPLFWAKRIAEKVG-CPVDDTSKMAGCLK 259
Query: 294 ELSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLIT 353
P + L+ S L+ PV++G+ F+P + ++L
Sbjct: 260 ITDPRALTLAYKLPLGSTEYPKLH------YLSFVPVIDGD----FIP----DDPVNLYA 305
Query: 354 STNKTDKIPMLTGVTKQE 371
+ + + G +
Sbjct: 306 NAA---DVDYIAGTNDMD 320
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 256 bits (655), Expect = 1e-80
Identities = 99/374 (26%), Positives = 154/374 (41%), Gaps = 71/374 (18%)
Query: 8 LRG---ASEGNKYYAFRGIPYAEPPLNEFRFQRPKR-RYLDGDIHAVKNGNPCLQPSPND 63
+ G + AF GIP+AEPP+ RF+RP+ + G +A N C Q
Sbjct: 15 VMGTRVPVLSSHISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNASTYPNNCQQYVDEQ 74
Query: 64 PKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLN 123
G ++ P R EDCL LN
Sbjct: 75 FPGFSG------SEMWNPNRE------------------------------MSEDCLYLN 98
Query: 124 VYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSG--LQYDPNDLV-MKNTVVVTVQYRLGS 180
++ P P P+ V+ WI+GGG+ GS Y+ L + V+V++ YR+G+
Sbjct: 99 IWVPS------PRPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGA 152
Query: 181 LGFLS-SKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSLS 239
GFL+ ++ PGNVGLLD AL W IQ FGGDP +T G+ +G ++ + LS
Sbjct: 153 FGFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILS 212
Query: 240 KLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTR--KSTVCSDMTGVELVKCLQELSP 297
+ + + SGS +A E + ++ C+ + EL+ CL+E P
Sbjct: 213 PGSRDLFRRAILQSGSPNCPWASV-SVAEGRRRAVELGRNLNCNLNSDEELIHCLREKKP 271
Query: 298 EEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITSTNK 357
+E++ +++ + PV++GE F P S ++ S
Sbjct: 272 QELI---------DVEWNVLPFDSIFRFSFVPVIDGE----FFP----TSLESMLNS-GN 313
Query: 358 TDKIPMLTGVTKQE 371
K +L GV K E
Sbjct: 314 FKKTQILLGVNKDE 327
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 254 bits (650), Expect = 5e-80
Identities = 104/374 (27%), Positives = 154/374 (41%), Gaps = 71/374 (18%)
Query: 8 LRG---ASEGNKYYAFRGIPYAEPPLNEFRFQRPKR-RYLDGDIHAVKNGNPCLQPSPND 63
+RG G AF GIPYA+PPL RF++P+ +A K N C Q
Sbjct: 13 VRGMQLTVFGGTVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKYANSCCQNIDQS 72
Query: 64 PKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLN 123
P S EDCL LN
Sbjct: 73 ------------------------------------FPGFHGSEMWNPNTDLSEDCLYLN 96
Query: 124 VYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSG--LQYDPNDLV-MKNTVVVTVQYRLGS 180
V+ P P P+ V+ WI+GGG++ G+ YD L ++ +VV++ YR+G+
Sbjct: 97 VWIPA------PKPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGA 150
Query: 181 LGFLS-SKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSLS 239
LGFL+ + PGN+GL D AL W + I FGG+P +T G+ +GA++ L LS
Sbjct: 151 LGFLALPGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLS 210
Query: 240 KLTSSWVQGIVAMSGSALSSFAV--DYRPEESYKNVTRKSTVCSDMTGVELVKCLQELSP 297
+ S + SGS + +AV Y N+ + + CS E++KCL+ P
Sbjct: 211 PGSHSLFTRAILQSGSFNAPWAVTSLYEARNRTLNLAKLTG-CSRENETEIIKCLRNKDP 269
Query: 298 EEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITSTNK 357
+EI+ + G + GP V+G+ FL + L+ +
Sbjct: 270 QEIL---------LNEAFVVPYGTPLSVNFGPTVDGD----FLT----DMPDILLEL-GQ 311
Query: 358 TDKIPMLTGVTKQE 371
K +L GV K E
Sbjct: 312 FKKTQILVGVNKDE 325
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 247 bits (633), Expect = 2e-77
Identities = 98/377 (25%), Positives = 145/377 (38%), Gaps = 72/377 (19%)
Query: 8 LRG---ASEGNKYYAFRGIPYAEPPLNEFRFQRPKR-RYLDGDIHAVKNGNPCLQPSPND 63
LRG + G AF GIP+AEPP+ RF P+ R G + A N C Q
Sbjct: 17 LRGIRLKAPGGPVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTFQNVCYQYVDTL 76
Query: 64 PKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLN 123
P + + EDCL LN
Sbjct: 77 ------------------------------------YPGFEGTEMWNPNRELSEDCLYLN 100
Query: 124 VYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSG--LQYDPNDLVMK-NTVVVTVQYRLGS 180
V+TP PV+ WI+GGG+ G+ YD L V+V++ YR+G+
Sbjct: 101 VWTP-----YPRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGT 155
Query: 181 LGFLS-SKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSLS 239
GFL+ ++ PGNVGLLD AL W + I FGGDP +T G+ +GA++ + LS
Sbjct: 156 FGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILS 215
Query: 240 KLTSSWVQGIVAMSGSALSSFAV--DYRPEESYKNVTRK---STVCSDMTGVELVKCLQE 294
+ S V SG+ +A + R + EL+ CL+
Sbjct: 216 LPSRSLFHRAVLQSGTPNGPWATVSAGEARRRATLLARLVGCPPGGAGGNDTELIACLRT 275
Query: 295 LSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITS 354
+++V + + + PVV+G+ FL ++ LI +
Sbjct: 276 RPAQDLV---------DHEWHVLPQESIFRFSFVPVVDGD----FLS----DTPEALINT 318
Query: 355 TNKTDKIPMLTGVTKQE 371
+ +L GV K E
Sbjct: 319 -GDFQDLQVLVGVVKDE 334
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 243 bits (623), Expect = 2e-75
Identities = 84/393 (21%), Positives = 149/393 (37%), Gaps = 68/393 (17%)
Query: 8 LRG---ASEGNKYYAFRGIPYAEPPLNEFRFQRPKR-RYLDGDIHAVKNGNPCLQPSPN- 62
+RG +G + + + GIPYA+PP+ + RF++P G + A C+Q
Sbjct: 14 VRGRSVTVQGREVHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATGLSATCVQERYEY 73
Query: 63 ---------DPKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKV 113
EDCL +NV+ P + + R+ G
Sbjct: 74 FPGFSGEEIWNPNTNVSEDCLYINVWAPAKARLRHGRGANGGEHPNGKQADTDHLIH--- 130
Query: 114 VGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSG--LQYDPNDLVMK-NTV 170
LP++ WI+GGG+ GS Y+ + + N +
Sbjct: 131 ----------------NGNPQNTTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVI 174
Query: 171 VVTVQYRLGSLGFL-------SSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITT 223
V + QYR+G+ GFL S ++ PGNVGL D A A+ W + FGG+P +T
Sbjct: 175 VASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRWLKDNAHAFGGNPEWMTL 234
Query: 224 AGQGSGASAAMLLSLSKLTSSWVQGIVAMSGSALSSFAV--DYRPEESYKNVTRK---ST 278
G+ +G+S+ +S +T V+ + SG+ + ++ + E K + +
Sbjct: 235 FGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMNAPWSHMTSEKAVEIGKALINDCNCNA 294
Query: 279 VCSDMTGVELVKCLQELSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEW 338
++ C++ + + I + + S + P ++G
Sbjct: 295 SMLKTNPAHVMSCMRSVDAKTISVQQWNSYSGILS-----------FPSAPTIDGA---- 339
Query: 339 FLPNLLENSAMDLITSTNKTDKIPMLTGVTKQE 371
FLP M L+ + + +L G + E
Sbjct: 340 FLP----ADPMTLMKTAD-LKDYDILMGNVRDE 367
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 235 bits (602), Expect = 9e-73
Identities = 90/380 (23%), Positives = 145/380 (38%), Gaps = 54/380 (14%)
Query: 8 LRGASEGNKYYAFRGIPYAEPPLNEFRFQRPKR-RYLDGDIHAVKNGNPCLQPSPNDPKK 66
+ G EG F+GIP+A+PPLN+ RF+ P+ + A C+Q P +
Sbjct: 13 ISGVLEGK-VDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKANDFSPACMQLDPGNSLT 71
Query: 67 VVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVYT 126
++ L + R V +EDCL LNV+
Sbjct: 72 LLDKALGLAKVIPEEFRGP-------------------LYDMAKGTVSMNEDCLYLNVFR 112
Query: 127 PKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLV------MKNTVVVTVQYRLGS 180
P + LPV+ WI+GG + GS Y N V + V V++ YR G
Sbjct: 113 PAGTKPDAK----LPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP 168
Query: 181 LGFLSSKQKDLPG--NVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSL 238
GFL G N GL D L W I NFGGDP+K+ G+ +GA + +
Sbjct: 169 FGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLI 228
Query: 239 SKLTSSWV------QGIVAMSGSALSSFAVDY-RPEESYKNVTRKSTVCSDMTGVELVKC 291
+ + + SG L P+ SY + + + + + ++C
Sbjct: 229 AYGGDNTYNGKKLFHSAILQSGGPLPYHDSSSVGPDISYNRFAQYAGCDTSASANDTLEC 288
Query: 292 LQELSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDL 351
L+ S + + ++ L + L GP +G +P ++A +L
Sbjct: 289 LRSKSSSVLHDA-----QNSYDLKDLFGLLPQFLGFGPRPDGN----IIP----DAAYEL 335
Query: 352 ITSTNKTDKIPMLTGVTKQE 371
S + K+P ++G + E
Sbjct: 336 FRS-GRYAKVPYISGNQEDE 354
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 228 bits (584), Expect = 2e-70
Identities = 85/375 (22%), Positives = 133/375 (35%), Gaps = 75/375 (20%)
Query: 4 HHSALRGASEGNKYYAFRGIPYAEPPLNEFRFQRPKRRYLDGDIHAVKNGNPCLQPSPND 63
++ +G F G+ YA PP+ + RF+ P+ P N
Sbjct: 16 GYARYQGVRLEAGVDEFLGMRYASPPIGDLRFRAPQD------------------PPANQ 57
Query: 64 PKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLN 123
A + G C+ + + EDCL +N
Sbjct: 58 ---------------------------TLQSATEYGPICIGLDEEESPGDI-SEDCLFIN 89
Query: 124 VYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLV---MKNTVVVTVQYRLGS 180
V+ P T LPV +I GGGY S Y+ ++ V VT YR+G+
Sbjct: 90 VFKPSTATSQSK----LPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGA 145
Query: 181 LGFLSSK--QKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSL 238
LGFL+S+ +++ N GLLD AL W + YI+ FGGDP+ I G +GA +
Sbjct: 146 LGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLS 205
Query: 239 SKLTSSW--VQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKCLQELS 296
+ G + S + V E ++ T CS + ++CL+E
Sbjct: 206 AYGGKDEGLFIGAIVESSFWPTQRTVS-EMEFQFERFV-NDTGCSS--ARDSLECLREQD 261
Query: 297 PEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITSTN 356
I ++ G S PV +G +P + + +
Sbjct: 262 IATIQKG-----NTGSPFPGGSSSPLPDWYFLPVTDGS----LVP----DELYNAFDA-G 307
Query: 357 KTDKIPMLTGVTKQE 371
K+P+L G E
Sbjct: 308 NFIKVPVLVGDDTDE 322
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 229 bits (585), Expect = 2e-70
Identities = 89/387 (22%), Positives = 143/387 (36%), Gaps = 66/387 (17%)
Query: 4 HHSALRGASEGNKYYAFRGIPYAEPPLNEFRFQRPKR-RYLDGDIHAVKNGNPCLQPSPN 62
+ AF GIP+AEPP+ RF+ P G C+Q +P
Sbjct: 7 ANGDTITGLNAIINEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTSYGPSCMQQNPE 66
Query: 63 DPKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTL 122
+ + K + S + EDCLT+
Sbjct: 67 GT--------------------------FEENLGKTALDLVMQSKVFQAVLPQSEDCLTI 100
Query: 123 NVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLV------MKNTVVVTVQY 176
NV P LPV+ WI GGG+ GS + P +V K + V V Y
Sbjct: 101 NVVRPPGTKAGAN----LPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNY 156
Query: 177 RLGSLGFLSSK--QKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGA-SAA 233
R+ S GFL+ + + GN GL D + W I FGGDP+K+T G+ +G+ S
Sbjct: 157 RVASWGFLAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVL 216
Query: 234 MLLSLSKLTSSWV-----QGIVAMSGSALSSFAVDY-RPEESYKNVTRKSTVCSDMTGVE 287
L + +++ + + SG+ + S VD E Y S C + +
Sbjct: 217 CHLIWNDGDNTYKGKPLFRAGIMQSGAMVPSDPVDGTYGNEIYDLFV-SSAGCGSAS--D 273
Query: 288 LVKCLQELSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENS 347
+ CL+ S + ++ + GF++ + L+ P +G+ + +
Sbjct: 274 KLACLRSASSDTLL-------DATNNTPGFLAYSSLRLSYLPRPDGK----NIT----DD 318
Query: 348 AMDLITSTNKTDKIPMLTGVTKQETGT 374
L+ K +P++ G E GT
Sbjct: 319 MYKLVRD-GKYASVPVIIGDQNDE-GT 343
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 214 bits (546), Expect = 6e-65
Identities = 93/398 (23%), Positives = 151/398 (37%), Gaps = 92/398 (23%)
Query: 7 ALRGASEGNKYYAFRGIPYAEPPLNEFRFQRPK--------RRYLDGDIHAVKNGNPCLQ 58
++G +E + ++GIPYA+PP+ ++RF+ P+ A G C Q
Sbjct: 12 KVKGTTENG-VHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVL-------DATAYGPICPQ 63
Query: 59 PSPNDPKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDED 118
PS S + + ED
Sbjct: 64 PSD------------------------------------------LLSLSYTELPRQSED 81
Query: 119 CLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQ--YDPNDLVMK-NTVVVTVQ 175
CL +NV+ P P+QN LPV+ WIHGG + G+G + YD + L + +VVT+
Sbjct: 82 CLYVNVFAPDTPSQN------LPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLN 135
Query: 176 YRLGSLGFL--SSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAA 233
YRLG GFL SS + N+GLLD A+AL W R I FGGDP+ +T G+ +G +
Sbjct: 136 YRLGPFGFLHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSI 195
Query: 234 MLLSLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKCLQ 293
L Q + SG++ + + + + + + L
Sbjct: 196 AALLAMPAAKGLFQKAIMESGASRTMTK--EQAASTAAAFLQVLGINESQ-----LDRLH 248
Query: 294 ELSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLIT 353
++ E+++ + + + +N + P ++ LP I
Sbjct: 249 TVAAEDLLKAADQLRIAEKENIFQLF-------FQPALDP----KTLP----EEPEKSIA 293
Query: 354 STNKTDKIPMLTGVTKQETGTGVKGTRDRFSRSSLRRM 391
IP+L G T+ E D S+ +L
Sbjct: 294 E-GAASGIPLLIGTTRDEGYLFFTPDSDVHSQETLDAA 330
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 210 bits (537), Expect = 1e-63
Identities = 90/382 (23%), Positives = 136/382 (35%), Gaps = 96/382 (25%)
Query: 7 ALRGASEGNKYYAFRGIPYAEPPLNEFRFQRPKR-------RYLDGDIHAVKNGNPCLQP 59
LRG + ++GIPYA+ P+ E RF P+ R A G +QP
Sbjct: 12 RLRGEMNEG-VFVWKGIPYAKAPVGERRFLPPEPPDAWDGVR------EATSFGPVVMQP 64
Query: 60 SPNDPKKVVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPNDPKKVVGDEDC 119
S ++G ED
Sbjct: 65 SDPIFSGLLGRMS----------------------------------------EAPSEDG 84
Query: 120 LTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSG--LQYDPNDLVMK-NTVVVTVQY 176
L LN+++P + + PV+FWIHGG + GSG YD + VVVT+ Y
Sbjct: 85 LYLNIWSP------AADGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINY 138
Query: 177 RLGSLGFLS-----SKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGAS 231
R+ GFL + GN+G+LD +AL W + I FGGDP+ IT G+ +GA+
Sbjct: 139 RMNVFGFLHLGDSFGEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAA 198
Query: 232 AAMLLSLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKC 291
+ +L S + + SGS + + K+ +
Sbjct: 199 SVGVLLSLPEASGLFRRAMLQSGSGSLLLRSPETAMAMTERILDKAG-IRPGD----RER 253
Query: 292 LQELSPEEIVLSDTDIESSNIQNGGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDL 351
L + EE++ + + + GPVV D L ++
Sbjct: 254 LLSIPAEELLRAALSLGPG--------------VMYGPVV----DGRVLR----RHPIEA 291
Query: 352 ITSTNKTDKIPMLTGVTKQETG 373
+ IP+L GVTK E
Sbjct: 292 LRY-GAASGIPILIGVTKDEYN 312
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 75.0 bits (184), Expect = 3e-15
Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 25/147 (17%)
Query: 115 GDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP--NDLVMKNTVVV 172
G+ ++V+ + T P+ ++HGG ++ LV + V
Sbjct: 64 GEGRQ-LVDVFYSEKTTNQ------APLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVA 116
Query: 173 TVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASA 232
+ Y L Q L + L+W Y + + +T AG +GA
Sbjct: 117 VMDYNL-------CPQVTLEQLMT--QFTHFLNWIFDYTE--MTKVSSLTFAGHXAGAHL 165
Query: 233 AMLLSL-----SKLTSSWVQGIVAMSG 254
+ + + S V ++ + G
Sbjct: 166 LAQILMRPNVITAQRSKMVWALIFLCG 192
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 71.8 bits (176), Expect = 2e-14
Identities = 20/198 (10%), Positives = 50/198 (25%), Gaps = 16/198 (8%)
Query: 111 KKVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP--NDLVMKN 168
+ + + Y + + P++ GGG+ SG + P ++
Sbjct: 7 RTLNTAAHPFQITAYWLDQISDFETA-VDYPIMIICPGGGFTYHSGREEAPIATRMMAAG 65
Query: 169 TVVVTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGS 228
V + Y+L L + + + W D +I AG +
Sbjct: 66 MHTVVLNYQL-------IVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSA 118
Query: 229 GASAAMLLSLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVEL 288
G + + + Y + + +
Sbjct: 119 GGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILG-----YPVIDLTAGFPTTSAARNQ 173
Query: 289 V-KCLQELSPEEIVLSDT 305
+ + + + +V +
Sbjct: 174 ITTDARLWAAQRLVTPAS 191
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 71.4 bits (175), Expect = 3e-14
Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 26/205 (12%)
Query: 103 LQPSPNDPKKVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP- 161
+ K D ++ Y + P QN+ P I GGGY+ S + DP
Sbjct: 8 FWYNKLMNKSTFSLNDTAWVDFYQLQNPRQNENYT--FPAIIICPGGGYQHISQRESDPL 65
Query: 162 -NDLVMKNTVVVTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNK 220
+ + V+ + Y + + G + L L ++ + + + +P +
Sbjct: 66 ALAFLAQGYQVLLLNYTVMNKG---TNYNFLS--QNLEEVQAVFSLIHQNHKEWQINPEQ 120
Query: 221 ITTAGQGSGASAAMLLSLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVC 280
+ G +G A S+ +G++ ++SF + + S+ N
Sbjct: 121 VFLLGCSAGGHLAAWYGNSE-QIHRPKGVILCYP--VTSFTFGWPSDLSHFN-------- 169
Query: 281 SDMTGVELVKCLQELSPEEIVLSDT 305
++ + E + E V S T
Sbjct: 170 ------FEIENISEYNISEKVTSST 188
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 70.3 bits (172), Expect = 8e-14
Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 27/170 (15%)
Query: 111 KKVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPN--DLVMKN 168
K + D L + K N VI +IHGGG G P D++ ++
Sbjct: 7 KVITKDAFALPYTIIKAK-------NQPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH 59
Query: 169 TVVVTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGS 228
++ + YRL + L + D+ ++ + + I T G+ S
Sbjct: 60 YDLIQLSYRL-------LPEVSLDC--IIEDVYASFDAIQ---SQY--SNCPIFTFGRSS 105
Query: 229 GASAAMLLSLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKST 278
GA ++L++ + + G++ G + + Y + +
Sbjct: 106 GAYLSLLIARDRD----IDGVIDFYGYSRINTEPFKTTNSYYAKIAQSIN 151
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 63.3 bits (154), Expect = 2e-11
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 13/146 (8%)
Query: 94 HAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRR 153
H + N Q +K+ LT ++ P LP I + GG Y
Sbjct: 8 HHHHHENLYFQGMQVIKQKLTATCAQLTGYLHQPDTNAHQTN----LPAIIIVPGGSYTH 63
Query: 154 GSGLQYDP--NDLVMKNTVVVTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYI 211
Q + ++Y L + + G +LD+ A++ R +
Sbjct: 64 IPVAQAESLAMAFAGHGYQAFYLEYTLLT-------DQQPLGLAPVLDLGRAVNLLRQHA 116
Query: 212 QNFGGDPNKITTAGQGSGASAAMLLS 237
+ DP +IT AG G L +
Sbjct: 117 AEWHIDPQQITPAGFSVGGHIVALYN 142
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 58.1 bits (140), Expect = 1e-09
Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 26/128 (20%)
Query: 124 VYTPKIPTQND----PNPELLPVIFWIHGGGYRRGSGLQYDPNDL--------VMKNTVV 171
+ + + + +IHGG + D N L
Sbjct: 21 SPDITLFNKTLTFQEISQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQ 80
Query: 172 VTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGAS 231
+++YRL S + P L D S + + I G GA+
Sbjct: 81 YSIEYRL-------SPEITNP--RNLYDAVSNITRLV---KEK--GLTNINMVGHSVGAT 126
Query: 232 AAMLLSLS 239
+ +
Sbjct: 127 FIWQILAA 134
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 57.9 bits (140), Expect = 1e-09
Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 22/110 (20%)
Query: 135 PNPELLPVIFWIHGGGYRRGSGLQYDP---NDLVMKNTVVVTVQYRLGSLGFLSSKQKDL 191
E + ++HGGG G+ V+ + Y L
Sbjct: 22 TTTEPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLA------------ 69
Query: 192 PGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLSL 238
P L + + G+ +G + L+
Sbjct: 70 PNTKIDHILRTLTETFQL----LNEEIIQNQSFGLCGRSAGGYLMLQLTK 115
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 57.2 bits (138), Expect = 1e-09
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 29/146 (19%)
Query: 115 GDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP--NDLVMKNTVVV 172
G+ D +++ P+ + + ++HGG + + + K V
Sbjct: 46 GEGDRHKFDLFLPEGTP--------VGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVA 97
Query: 173 TVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGA-S 231
Y L + + I+ A+ I AG +G
Sbjct: 98 MPSYEL-------CPEVRISEITQ--QISQAVTAAAK------EIDGPIVLAGHSAGGHL 142
Query: 232 AAMLLS---LSKLTSSWVQGIVAMSG 254
A +L L + + ++ +V +S
Sbjct: 143 VARMLDPEVLPEAVGARIRNVVPISP 168
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 56.1 bits (136), Expect = 5e-09
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 25/132 (18%)
Query: 113 VVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP--NDLVMK-NT 169
+ G + VY P+ + E LP + + HGGG+ GS +D L
Sbjct: 56 IPGRGGPIRARVYRPR-------DGERLPAVVYYHGGGFVLGSVETHDHVCRRLANLSGA 108
Query: 170 VVVTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAGQ 226
VVV+V YRL P + + D A W G D KI AG
Sbjct: 109 VVVSVDYRLA------------PEHKFPAAVEDAYDAAKWVADNYDKLGVDNGKIAVAGD 156
Query: 227 GSGASAAMLLSL 238
+G + A + ++
Sbjct: 157 SAGGNLAAVTAI 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 6e-09
Identities = 62/377 (16%), Positives = 111/377 (29%), Gaps = 155/377 (41%)
Query: 30 LNEFRFQRPKRRYLDG-DIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVY-----TPKR 83
L EF YL+G DIHA+ + K + + Y KR
Sbjct: 88 LTEFE-----NCYLEGNDIHALAAKLLQENDTTLVKTKEL-------IKNYITARIMAKR 135
Query: 84 PKRRYLDGD-IHAVKNGNPCL------QPSPNDPKKVVGD-EDCLT-L----NVYTPKI- 129
P + + AV GN L Q G+ +D L Y +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQ----------GNTDDYFEELRDLYQTYHVLVG 185
Query: 130 --------------PTQNDPN---PELLPVIFWIHGGGYRRGSGLQYDPNDLVMKNTVVV 172
T D + L ++ W+ +P++
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE------------NPSN--------- 224
Query: 173 TVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYI---QNFGGDPNKITTAGQG-S 228
+L S P +G++ +A HY+ + G P ++ + +G +
Sbjct: 225 -----TPDKDYLLSIPISCPL-IGVIQLA-------HYVVTAKLLGFTPGELRSYLKGAT 271
Query: 229 GASAAMLLSLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVEL 288
G S ++ ++ +A + S SF + +V + + +
Sbjct: 272 GHSQGLVTAV----------AIAETDSW-ESF---------FVSVRK---------AITV 302
Query: 289 -----VKCLQELSPEEIVLSDTDIESSNIQNG-GFVSGLAELLTPGP--VVEGEDDEWFL 340
V+C E P L + +E S ++N G P P + E
Sbjct: 303 LFFIGVRC-YEAYP-NTSLPPSILEDS-LENNEG---------VPSPMLSISNLTQE--- 347
Query: 341 PNLLENSAMDLITSTNK 357
++ D + TN
Sbjct: 348 --QVQ----DYVNKTNS 358
Score = 45.4 bits (107), Expect = 3e-05
Identities = 49/288 (17%), Positives = 80/288 (27%), Gaps = 84/288 (29%)
Query: 111 KKVVGDE-DCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRG--SGLQYD--PNDLV 165
+ V + D + Y I NP L + F G R S + ++ + +
Sbjct: 1643 QDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 166 MKNTVVVTVQYRLGSLGFLSSKQK-DLPGN--VGLLDIASALHWTRHYIQNFGGDPNKIT 222
+ + S F S K L + A +++ G P T
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF---EDLKSKGLIPADAT 1758
Query: 223 TAGQGSGASAAMLLSLSKLTSSWVQGIVAMSG--SALSSFA-----------VDYRPEES 269
AG SL G +AL+S A V YR
Sbjct: 1759 FAG----------HSL---------------GEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 270 YKNVTRKSTVCSD--MTGVELVKCLQELSPEEIVLSDTD------IESSNIQNGGFVSGL 321
V R S+ M + +P + S + +E + G V +
Sbjct: 1794 QVAVPRDELGRSNYGMIAI---------NPGRVAASFSQEALQYVVERVGKRTGWLVE-I 1843
Query: 322 AELLTPGP--VVEGEDDEWFLPNLLENSAMDLIT---STNKTDKIPML 364
V G + A+D +T + K KI ++
Sbjct: 1844 VNYNVENQQYVAAG-----------DLRALDTVTNVLNFIKLQKIDII 1880
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 54.5 bits (132), Expect = 1e-08
Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 24/132 (18%)
Query: 113 VVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPN--DLVMK-NT 169
+ L + +Y P+ P + + HGG + G +DP L
Sbjct: 53 MDLPGRTLKVRMYRPE------GVEPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRA 106
Query: 170 VVVTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAGQ 226
VV +V YRL P + + D AL W +F DP +I G
Sbjct: 107 VVFSVDYRLA------------PEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVGGD 154
Query: 227 GSGASAAMLLSL 238
+G + A + S+
Sbjct: 155 SAGGNLAAVTSI 166
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 54.2 bits (131), Expect = 2e-08
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 113 VVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPN--DLVMK-NT 169
+ + VY PK LP + + HGGG+ GS +D L ++
Sbjct: 53 IPVSGGSIRARVYFPK-------KAAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDS 105
Query: 170 VVVTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAGQ 226
VVV+V YRL P + D +AL W G DP++I AG
Sbjct: 106 VVVSVDYRLA------------PEYKFPTAVEDAYAALKWVADRADELGVDPDRIAVAGD 153
Query: 227 GSGASAAMLLSL 238
+G + A ++S+
Sbjct: 154 SAGGNLAAVVSI 165
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 53.6 bits (129), Expect = 4e-08
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 23/131 (17%)
Query: 115 GDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGS--GLQYDP--NDLVMKNTV 170
D + +TL+V+ P +LP + + HGGG + + DL +V
Sbjct: 90 VDGNEITLHVFRP------AGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSV 143
Query: 171 VVTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAGQG 227
VV V +R + G+ D +A+ W + ++ G + G+
Sbjct: 144 VVMVDFRNAW--------TAEGHHPFPSGVEDCLAAVLWVDEHRESLGLSG--VVVQGES 193
Query: 228 SGASAAMLLSL 238
G + A+ +L
Sbjct: 194 GGGNLAIATTL 204
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 52.7 bits (127), Expect = 6e-08
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 120 LTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPN--DLVMK-NTVVVTVQY 176
+ + TP +PV+ WIHGGG+ G+ DP ++ + V V+Y
Sbjct: 65 VKIRFVTPD------NTAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEY 118
Query: 177 RLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGA--S 231
RL P + D +AL + + + G DP++I GQ +G +
Sbjct: 119 RLA------------PETTFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLA 166
Query: 232 AAMLL 236
A +L
Sbjct: 167 AGTVL 171
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 52.8 bits (126), Expect = 7e-08
Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 18/155 (11%)
Query: 123 NVYTPKIPTQNDPNPELLPVIFWIHGGG-----------YRRGSGLQYDPNDLVMKNTVV 171
++ PK + P++ ++HG G RG+ + P V+ V
Sbjct: 161 RLFVPKDVNPDRK----YPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFV 216
Query: 172 VTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGAS 231
+ Q + + + + + + R + + D N+I G G
Sbjct: 217 LAPQCP-PNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGY 275
Query: 232 AAMLLSLSKLTSSWVQGIVAMSGSALSSFAVDYRP 266
+ + + G S +
Sbjct: 276 GTWTAIMEF--PELFAAAIPICGGGDVSKVERIKD 308
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 52.6 bits (127), Expect = 8e-08
Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 27/133 (20%)
Query: 112 KVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPN--DLVMK-N 168
+ G + + VY K PV+ + HGGG+ S +D + N
Sbjct: 60 TIKGRNGDIRVRVYQQKPD---------SPVLVYYHGGGFVICSIESHDALCRRIARLSN 110
Query: 169 TVVVTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAG 225
+ VV+V YRL P + + D A W + DP+KI G
Sbjct: 111 STVVSVDYRLA------------PEHKFPAAVYDCYDATKWVAENAEELRIDPSKIFVGG 158
Query: 226 QGSGASAAMLLSL 238
+G + A +S+
Sbjct: 159 DSAGGNLAAAVSI 171
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 52.3 bits (126), Expect = 1e-07
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 26/130 (20%)
Query: 115 GDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPN--DLVMK-NTVV 171
+ + +Y P PV+ + H GG+ G+ +L + V
Sbjct: 68 EAGRPVPVRIYRAA--------PTPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAV 119
Query: 172 VTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAGQGS 228
V+V YRL P + L D L W G D ++ AG +
Sbjct: 120 VSVDYRLA------------PEHPYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSA 167
Query: 229 GASAAMLLSL 238
GA+ A L+
Sbjct: 168 GATLAAGLAH 177
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 52.4 bits (126), Expect = 1e-07
Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 35/169 (20%)
Query: 84 PKRRYLDGDIHAVKNGNPCLQPSPNDPKK--------VVGDEDCLTLNVYTPKIPTQNDP 135
P D I P SP+ + + ++ P+ N
Sbjct: 23 PIVLNPDRTITRP-IQIPSTAASPDPTSSSPVLTKDLALNPLHNTFVRLFLPRHALYNS- 80
Query: 136 NPELLPVIFWIHGGGYRRGS--GLQYDP--NDLVMK-NTVVVTVQYRLGSLGFLSSKQKD 190
LP++ + HGGG+ S + ++ + V+ +V YRL
Sbjct: 81 --AKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLA----------- 127
Query: 191 LPGN---VGLLDIASALHWTRHY---IQNFGGDPNKITTAGQGSGASAA 233
P + D AL W + D + G+ +G + A
Sbjct: 128 -PEHRLPAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIA 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 4e-07
Identities = 50/321 (15%), Positives = 93/321 (28%), Gaps = 98/321 (30%)
Query: 56 CLQPSPNDPK------KVVGDEDCLT-LNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPN 108
QPS ++ D NV R + ++ L+P+ N
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQ------PYLKLRQALLELRPAKN 152
Query: 109 DPKKVV--GD----EDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGL----- 157
V+ G + + L+V IFW++ +
Sbjct: 153 ----VLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-----IFWLNLKNCNSPETVLEMLQ 203
Query: 158 ----QYDPNDLVMKNTVVVTVQYRLGSL-GFLSSKQKDLPGNVGLL---DIASALHWTRH 209
Q DPN ++ ++ R+ S+ L K P LL ++
Sbjct: 204 KLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNAK 257
Query: 210 YIQNFGGDPN-KI--TTAGQG-----SGASAA------MLLSLSK-----LTSSWVQGIV 250
F + + KI TT + S A+ ++L+ L ++
Sbjct: 258 AWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 251 ------AMSGS--ALSSFAVDYRPE----ESYKNVTRKSTVCSDMTGVELVKCLQELSPE 298
++ + LS A R +++K+V C +T + + L L P
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN-----CDKLTTI-IESSLNVLEPA 369
Query: 299 E---------IVLSDTDIESS 310
E + I +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTI 390
Score = 37.9 bits (87), Expect = 0.006
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 30/117 (25%)
Query: 272 NVTRKSTVCSDMTGVELVKCLQELSPEEIV-----------------LSDTDIESSNIQN 314
NV+R ++L + L EL P + V ++ +
Sbjct: 130 NVSRLQPY------LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDF 182
Query: 315 GGFVSGLAELLTPGPVVEGEDDEWFLPNLLENSAMDLITSTNKTDKIPMLTGVTKQE 371
F L +P V+E L LL + + ++ + I + + E
Sbjct: 183 KIFWLNLKNCNSPETVLE------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 49.2 bits (118), Expect = 1e-06
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 32/135 (23%)
Query: 113 VVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMK----- 167
V +T +Y+P+ P ++++HGGG+ G+ D +D +M+
Sbjct: 68 VPTPYGDVTTRLYSPQ--------PTSQATLYYLHGGGFILGN---LDTHDRIMRLLARY 116
Query: 168 -NTVVVTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITT 223
V+ + Y L P + + + + + + + KI
Sbjct: 117 TGCTVIGIDYSLS------------PQARYPQAIEETVAVCSYFSQHADEYSLNVEKIGF 164
Query: 224 AGQGSGASAAMLLSL 238
AG +GA A+ +L
Sbjct: 165 AGDSAGAMLALASAL 179
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 45.5 bits (108), Expect = 1e-05
Identities = 42/174 (24%), Positives = 55/174 (31%), Gaps = 42/174 (24%)
Query: 86 RRYLDGDI--HAVKNGNPCLQPSPNDPKKVVGDEDC-------LTLNVYTPKIPTQNDPN 136
R DG H + + + + +P V D L VY P Q P
Sbjct: 41 LRRPDGTFNRHLAEYLDRKVTANA-NPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPP 99
Query: 137 PEL----------LPVIFWIHGGGYRRGSG--LQYDP--NDLVMK-NTVVVTVQYRLGSL 181
L +PVI + HGG + S YD LV VVV+V YR
Sbjct: 100 SILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRA-- 157
Query: 182 GFLSSKQKDLPGN---VGLLDIASALHWTRHY--IQNFGGDPNKITTAGQGSGA 230
P N D AL+W +++ I AG SG
Sbjct: 158 ----------PENPYPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGG 201
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 45.3 bits (108), Expect = 2e-05
Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 28/133 (21%)
Query: 112 KVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP--NDLVMK-N 168
+ G E + VY PK V+ + HGGG+ G YDP +
Sbjct: 69 TIPGSETNIKARVYYPK-------TQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQ 121
Query: 169 TVVVTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAG 225
V ++V YRL P N ++D AL W + + F I G
Sbjct: 122 CVTISVDYRLA------------PENKFPAAVVDSFDALKWVYNNSEKF-NGKYGIAVGG 168
Query: 226 QGSGA--SAAMLL 236
+G +A +
Sbjct: 169 DSAGGNLAAVTAI 181
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 43.5 bits (103), Expect = 6e-05
Identities = 28/131 (21%), Positives = 42/131 (32%), Gaps = 22/131 (16%)
Query: 110 PKKVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGS--GLQYDP--NDLV 165
E+ + P E PVI + HGG + S YD V
Sbjct: 82 AAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFV 141
Query: 166 MK-NTVVVTVQYRLGSLGFLSSKQKDLPGN---VGLLDIASALHWTRH--YIQNFGGDPN 219
VVV+V YR P + D +AL W ++++ G
Sbjct: 142 KLSKGVVVSVNYRRA------------PEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQA 189
Query: 220 KITTAGQGSGA 230
++ +G SG
Sbjct: 190 RVFLSGDSSGG 200
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 43.3 bits (102), Expect = 1e-04
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 124 VYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPND--LVMKNTVVVTVQYRLGSL 181
+Y P P P EL P + HGG R D + + V V Y GS
Sbjct: 408 IYPPHSPDFTGPADELPPYVVMAHGGPTSR-VPAVLDLDVAYFTSRGIGVADVNYG-GST 465
Query: 182 GFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGS 228
G+ + ++ L G G++D+ + D ++ G GS
Sbjct: 466 GYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRG-GS 511
>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
Length = 322
Score = 42.7 bits (101), Expect = 1e-04
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 28/114 (24%)
Query: 135 PNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMK-----NTVVVTVQYRLGSLGFLSSKQK 189
P + I ++HGGGY GS + +V + + + YRL
Sbjct: 75 PGCQAGKAILYLHGGGYVMGSINTHRS--MVGEISRASQAAALLLDYRL----------- 121
Query: 190 DLPGN---VGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGA--SAAMLLSL 238
P + + D +A W + + G P ++ +G +G A+L+S
Sbjct: 122 -APEHPFPAAVEDGVAAYRW----LLDQGFKPQHLSISGDSAGGGLVLAVLVSA 170
>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
bacterium} PDB: 3dnm_A
Length = 322
Score = 41.5 bits (98), Expect = 2e-04
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 141 PVIFWIHGGGYRRGSGLQYDPNDLVMK-----NTVVVTVQYRLGSLGFLSSKQKDLPGNV 195
I + HGGGY GS + L + + + ++ YRL P N
Sbjct: 81 AHILYFHGGGYISGSPSTHLV--LTTQLAKQSSATLWSLDYRLA------------PENP 126
Query: 196 ---GLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGA--SAAMLLSL 238
+ D +A G ++I AG +G + A +L
Sbjct: 127 FPAAVDDCVAAYRALLKT----AGSADRIIIAGDSAGGGLTTASMLKA 170
>3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha
sandwich, structural genomics, PSI-2; 1.83A {Bordetella
parapertussis 12822}
Length = 304
Score = 39.7 bits (91), Expect = 0.001
Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 13/143 (9%)
Query: 120 LTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMKNTVVVTVQYRLG 179
TLN Y P T + PV+ HG + ++V +
Sbjct: 40 FTLNTYRPYGYTPD------RPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFSDE 93
Query: 180 SL-------GFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASA 232
+ P +V A + D ++ G +G
Sbjct: 94 IWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQF 153
Query: 233 AMLLSLSKLTSSWVQGIVAMSGS 255
L S+ + + A G
Sbjct: 154 VHRLMSSQPHAPFHAVTAANPGW 176
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 39.7 bits (93), Expect = 0.001
Identities = 25/187 (13%), Positives = 43/187 (22%), Gaps = 37/187 (19%)
Query: 81 PKRPKRRYLDGDIH----AVKNGNPCLQPSPNDPKKVVGDEDCLTLNVYTPKIPTQNDPN 136
R D D+ + N P+ E ++ + ++ +
Sbjct: 37 HNRSIMFKNDQDVERFFYKREIENRKKHKQPSTLNVKANLEKLSLDDMQVFRFNFRHQID 96
Query: 137 PELLPVIFWIHGGGYRRGSGLQYDPNDLVMK-----NTVVVTVQYRLGSLGFLSSKQKDL 191
I +IHGG + L+ K VV Y
Sbjct: 97 K----KILYIHGGFNALQPSPFHWR--LLDKITLSTLYEVVLPIYPK------------T 138
Query: 192 PGNV---GLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGA--SAAMLLSLSKLTSSWV 246
P I + G GSG + + + SL
Sbjct: 139 PEFHIDDTFQAIQRVYDQLVS-----EVGHQNVVVMGDGSGGALALSFVQSLLDNQQPLP 193
Query: 247 QGIVAMS 253
+ +S
Sbjct: 194 NKLYLIS 200
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 39.0 bits (91), Expect = 0.001
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 23/136 (16%)
Query: 129 IPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLV------MKNTVVVTVQYRL---G 179
D + PV+ +HG G + DL+ V++V+ + G
Sbjct: 30 FQKGKDTSK---PVLLLLHG----TGG----NELDLLPLAEIVDSEASVLSVRGNVLENG 78
Query: 180 SLGFLSSKQKDLPGNVGLLDIASALH-WTRHYIQNFGGDPNKITTAGQGSGASAAMLLSL 238
F + + L+ L+ + + + D N I G +G A + SL
Sbjct: 79 MPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNG--ANIAASL 136
Query: 239 SKLTSSWVQGIVAMSG 254
+ ++G V
Sbjct: 137 LFHYENALKGAVLHHP 152
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 36.6 bits (84), Expect = 0.009
Identities = 22/160 (13%), Positives = 43/160 (26%), Gaps = 21/160 (13%)
Query: 104 QPSPNDPKKVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP-- 161
+ P V + + +Y P+ PVI W +G G Y
Sbjct: 16 NFDRSGPYTVSSQSEGPSCRIYRPRDLG---QGGVRHPVILWGNGTG---AGPSTYAGLL 69
Query: 162 NDLVMKNTVVVTVQYRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKI 221
+ VV + + G L V D + + + ++
Sbjct: 70 SHWASHGFVVAAAETS--NAGTGREMLACLDYLVRENDTPYGTYSGKL-------NTGRV 120
Query: 222 TTAGQGSGASAAMLLSLSKLTSSWVQGIVAMSGSALSSFA 261
T+G G +++ + V+ + L
Sbjct: 121 GTSGHSQGGGGSIMA----GQDTRVRTTAPIQPYTLGLGH 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 36.7 bits (85), Expect = 0.011
Identities = 28/156 (17%), Positives = 43/156 (27%), Gaps = 30/156 (19%)
Query: 67 VVGDEDCLTLNVYTPKRPKRRYLDGDIHAVKNGNPCLQPSPN--DPKKVVGDE------- 117
VV L + + P I ++ +G P L+ + + G
Sbjct: 288 VVLWRGKLVTSHTSLSTP------PRIVSLPSGEPLLEGGLPEDLRRSIAGSRLVWVESF 341
Query: 118 DCLTLN--VYTPKIPTQNDPNPELLPVIFWIHGG-GYRRGSGLQYDPNDLVMKNTVVVTV 174
D + V P + +HGG L VV
Sbjct: 342 DGSRVPTYVLESGRAPTP------GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMP 395
Query: 175 QYRLGSLG----FLSSKQKDLPGNVGLLDIASALHW 206
YR GS G + D L D+++A W
Sbjct: 396 NYR-GSTGYGEEWRLKIIGDP-CGGELEDVSAAARW 429
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 33.7 bits (77), Expect = 0.080
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 137 PELLPVIFWIHGGGYRRGSGLQYDPNDLVMKNTVVVTVQYRLGSLGFLSSKQKDLPGNVG 196
P +P + ++HG G + L + V + +T R G G+ +S ++ +
Sbjct: 25 PTGMPGVLFVHGWGGSQHHSLVR-AREAVGLGCICMTFDLR-GHEGY-ASMRQSVTRAQN 81
Query: 197 LLDIASALHW--TRHYIQNFGGDPNKITTAGQGSGASAAMLL 236
L DI +A + Y+ D + I G G + LL
Sbjct: 82 LDDIKAAYDQLASLPYV-----DAHSIAVVGLSYGGYLSALL 118
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 34.0 bits (77), Expect = 0.082
Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 17/141 (12%)
Query: 110 PKKVVGDEDCLTL--NVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGS------GLQYDP 161
P+ + D L L +VYT + L ++F +HG G + L
Sbjct: 21 PQSTLCATDRLELTYDVYTSAERQRRSRTATRLNLVF-LHGSGMSKVVWEYYLPRLVAAD 79
Query: 162 NDLVMKNTVVVTVQYRLGSLGFLSSK---QKDLPGNVGLLDIAS-ALHWTRHYIQNFGGD 217
+ V+ + S + L N +D A L + +
Sbjct: 80 AEGNYAIDKVLLIDQV----NHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSH 135
Query: 218 PNKITTAGQGSGASAAMLLSL 238
P G G A+ +
Sbjct: 136 PALNVVIGHSMGGFQALACDV 156
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 33.6 bits (76), Expect = 0.085
Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 11/122 (9%)
Query: 140 LPVIFWIHGGGYRRGSGLQYDP--NDLVMKNTVVVTVQYRL--GSLGFLSSKQKDLPGNV 195
++ +HG GS + +++ G S +
Sbjct: 24 KALLLALHGLQ---GSKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEE 80
Query: 196 GLLDIASALHWTRHYIQNFG-GDPNKITTAGQGSGASAAMLLSLSKLTSSWVQGIVAMSG 254
R + + AG GA A LL +G++A G
Sbjct: 81 VYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAE---GFRPRGVLAFIG 137
Query: 255 SA 256
S
Sbjct: 138 SG 139
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 33.5 bits (76), Expect = 0.094
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 123 NVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP--NDLVMKNTVVVTVQYRLGS 180
+Y P+ I G G+ + VV+ + +
Sbjct: 86 TIYYPR-------ENNTYGAIAISPGYT---GTQSSIAWLGERIASHGFVVIAIDTN-TT 134
Query: 181 LGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAMLLS 237
L S+ + L LD + + D +++ G G + L+
Sbjct: 135 LDQPDSRARQL---NAALDYMLTDASSAVRNR---IDASRLAVMGHSMGGGGTLRLA 185
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 32.9 bits (75), Expect = 0.17
Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 20/123 (16%)
Query: 135 PNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMKNTVVVTVQYRLGSLG----FLSSKQKD 190
P + HG G D + V VV + R G G
Sbjct: 103 KTEGKHPALIRFHGYSSNS--GDWNDKLNYVAAGFTVVAMDVR-GQGGQSQDVGGVTGNT 159
Query: 191 LPGNV--GLLDIASALHWTR---------HYIQNFGG-DPNKITTAGQG-SGASAAMLLS 237
L G++ GL D A + + + N D +++ G G + +
Sbjct: 160 LNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAA 219
Query: 238 LSK 240
L
Sbjct: 220 LEP 222
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 32.7 bits (74), Expect = 0.21
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 17/140 (12%)
Query: 121 TLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLV----MKNTVVVTVQY 176
+ ++T D E P+ + G + + + L + V V +
Sbjct: 183 RVWIFTTG-----DVTAEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPPAVYVLIDA 237
Query: 177 RLGSLGFLSSKQKDLPGNVGLLD-IASALHWTRHYIQNFGGDPNKITTAGQGSGASAAML 235
+ + +LP N + L I F ++ AGQ G +A+
Sbjct: 238 -----IDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALY 292
Query: 236 LSLSKLTSSWVQGIVAMSGS 255
L +++ SGS
Sbjct: 293 AGLHWPER--FGCVLSQSGS 310
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 32.1 bits (73), Expect = 0.31
Identities = 21/127 (16%), Positives = 34/127 (26%), Gaps = 23/127 (18%)
Query: 129 IPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMKNTVVVTVQYRLGS-------- 180
+P + P P I HG G ++ + + + R G
Sbjct: 75 VPDKEGP----HPAIVKYHGYNASY-DGEIHEMVNWALHGYATFGMLVR-GQQRSEDTSI 128
Query: 181 ------LGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGS--GASA 232
LG+++ D A+ D +I G GS G
Sbjct: 129 SPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTG-GSQGGGLT 187
Query: 233 AMLLSLS 239
+LS
Sbjct: 188 IAAAALS 194
>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A
virulence facto LUNG infection; HET: MSE; 1.7A
{Streptococcus pneumoniae}
Length = 263
Score = 31.6 bits (72), Expect = 0.35
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 121 TLNVYTPKIPTQNDPNPELLPVIFWIHGGG 150
+NV P +P E +PV++ +HG
Sbjct: 22 GVNVLYPDANRVEEPECEDIPVLYLLHGMS 51
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 31.0 bits (70), Expect = 0.45
Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 41/153 (26%)
Query: 125 YTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLV------MKNTVVVTVQ--- 175
+ ++ + +F +HG G D LV +V +
Sbjct: 18 FPYRLLGAGKESR---ECLFLLHGSG--------VDETTLVPLARRIAPTATLVAARGRI 66
Query: 176 --------YRLGSLGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAG-- 225
+ K + A+ +T + G + + T G
Sbjct: 67 PQEDGFRWFERIDPTRFEQKSIL-------AETAAFAAFTNEAAKRHGLNLDHATFLGYS 119
Query: 226 QGSGASAAMLLSLSKLTSSWVQGIVAMSGSALS 258
G+ ++++L + V+ + +
Sbjct: 120 NGANLVSSLMLLHPGI----VRLAALLRPMPVL 148
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 31.4 bits (71), Expect = 0.50
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 140 LPVIFWIHGGGYRRGSGLQYDPNDLVMKNTVVVTVQYRLGSLGFLSSKQKDLPGNVGLLD 199
LP + G G G +D + + R G+L D P G +D
Sbjct: 95 LPCVVQYIGYNG--GRGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE--GPVD 150
Query: 200 IASALHWTRH 209
TR
Sbjct: 151 PQYPGFMTRG 160
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP:
c.69.1.16
Length = 262
Score = 30.8 bits (69), Expect = 0.62
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 19/115 (16%)
Query: 123 NVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDP--NDLVMKNTVVVTVQYRLGS 180
+Y P + G L + VV T+ +
Sbjct: 42 TIYYPT-----STADGTFGAVVISPGFT---AYQSSIAWLGPRLASQGFVVFTIDTN-TT 92
Query: 181 LGFLSSKQKDLPGNVGLLDIASALHWTRHYIQNFGGDPNKITTAGQGSGASAAML 235
L S+ + L + LD + R + D ++ G G ++
Sbjct: 93 LDQPDSRGRQL---LSALDYLTQRSSVRTRV-----DATRLGVMGHSMGGGGSLE 139
>3qta_A Chemotaxis protein CHEC; CHEC-like, 3-layer(ABA) sandwich,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 2.00A {Haloarcula marismortui}
Length = 233
Score = 29.5 bits (66), Expect = 1.8
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 252 MSGSALSSFAVDYRPEESYKNVTRKSTVCSDMTGVELVKCLQELSPEEIVLSDTDIESSN 311
G L +F E+ + MTG + +L + E N
Sbjct: 72 PYGVFLMTF-----ETETAAEIAEL------MTGSSVEDGFTQLHESAL------QEMCN 114
Query: 312 IQNGGFVSGLAELL 325
I GF+ G+A L
Sbjct: 115 ILTSGFIDGIANTL 128
>3etv_A Protein transport protein TIP20,linker,protein transport protein
DSL1; TIP20P-DSL1P complex, endoplasmic reticulum,
ER-golgi transport; 1.94A {Saccharomyces cerevisiae}
PDB: 3etu_A
Length = 355
Score = 29.4 bits (65), Expect = 2.4
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 111 KKVVGDEDCLTLNVYTPKIPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVMKNTV 170
K+V + + L + K ++ GSG D +DL+ + +
Sbjct: 19 KQVQNERNELASKLQNLKQSLASNDT---------------GGGSGGGSDSSDLLQREAI 63
Query: 171 VVTVQYRLGSLGFLSSKQKDLPGNVGLLDI 200
+ L +L + K++ N+ +L++
Sbjct: 64 LANELNILDNLKTFLNLIKEVKTNLNILEL 93
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc
genomics, joint center for structural genomics, JCSG;
1.90A {Shewanella frigidimarina}
Length = 116
Score = 27.6 bits (61), Expect = 3.1
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 43 LDGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVYTPKRPKRRYLDG 91
+DG I + G+ P P+ V + ++ ++P R +++G
Sbjct: 69 VDGVIKVLTAGDSFFVP-PHVDHGAVCPTGGILIDTFSPARED--FVEG 114
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural
genomics, PSI-2, protein structure initiative; 2.82A
{Bacillus subtilis}
Length = 171
Score = 28.2 bits (62), Expect = 3.3
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 15/42 (35%)
Query: 90 DGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVYTPKIPT 131
G IH + N E ++L+VY+P +
Sbjct: 131 KGLIHKMSN---------------PTSERMVSLHVYSPPLED 157
Score = 27.8 bits (61), Expect = 3.9
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 15/38 (39%)
Query: 44 DGDIHAVKNGNPCLQPSPNDPKKVVGDEDCLTLNVYTP 81
G IH + N E ++L+VY+P
Sbjct: 131 KGLIHKMSN---------------PTSERMVSLHVYSP 153
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine
hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo
sapiens} SCOP: c.69.1.14
Length = 232
Score = 28.2 bits (63), Expect = 4.3
Identities = 19/145 (13%), Positives = 37/145 (25%), Gaps = 33/145 (22%)
Query: 129 IPTQNDPNPELLPVIFWIHGGGYRRGSGLQYDPNDLVM-------KNTVVV-------TV 174
+P + ++HG G + + + V
Sbjct: 16 VPAARKATA----AVIFLHG----LGD----TGHGWAEAFAGIRSSHIKYICPHAPVRPV 63
Query: 175 QYRLGSLGF----LSSKQKDLPGNV-GLLDIASALHWTRHYIQNFGGDPNKITTAGQGSG 229
+ + D + G+ A + G N+I G G
Sbjct: 64 TLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQG 123
Query: 230 ASAAMLLSLSKLTSSWVQGIVAMSG 254
A+ L + T + G+ A+S
Sbjct: 124 G--ALSLYTALTTQQKLAGVTALSC 146
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 27.6 bits (61), Expect = 5.7
Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 22/124 (17%)
Query: 141 PVIFWIHGGGYRRGSGLQYDPNDLV------MKNTVVVTVQYRLGSLGFLSSKQKDLPGN 194
P+ +HG G D N + +++ + G ++ G
Sbjct: 63 PLFVLLHG----TGG----DENQFFDFGARLLPQATILSPVGDVSEHGAARFFRRTGEGV 114
Query: 195 VGLLDIASALHWTRHYI--QNFGGDPNKITTAG--QGSGASAAMLLSLSKLTSSWVQGIV 250
++D+ A +I + G G+ A +L+ +L V
Sbjct: 115 YDMVDLERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPEL----FDAAV 170
Query: 251 AMSG 254
M
Sbjct: 171 LMHP 174
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.4
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 17/43 (39%)
Query: 237 SLSKLTSSWVQGIVAMSGSALSSFAVDYRPEESYKNVTRKSTV 279
+L KL +S L +A D P + K+T+
Sbjct: 21 ALKKLQAS------------LKLYADDSAPA-----LAIKATM 46
>2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation,
hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum}
SCOP: c.69.1.37 PDB: 2d80_A*
Length = 318
Score = 27.1 bits (59), Expect = 9.5
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 211 IQNFGGDPNKITTAGQGSGASAAMLLSLS 239
+ F +PN ++ +G SG A L ++
Sbjct: 3 LPAFNVNPNSVSVSGLASGGYMAAQLGVA 31
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis,
anticapsin synthesis, BI-Cu double stranded beta helix,
antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus
subtilis} PDB: 3h7y_A* 3h9a_A*
Length = 243
Score = 27.1 bits (59), Expect = 9.8
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 42 YLDGDIHAVKNGNPCLQPSPNDPKKVV--GDEDCLTLNVYTPKR---PKRRYLDGD 92
++G +K G P + + +++ ++N++ P R K + + D
Sbjct: 180 TVEGCTVEMKFGTAYFCE-PREDHGAINRSEKESKSINIFFPPRYNRAKAKKMKAD 234
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,189,382
Number of extensions: 380195
Number of successful extensions: 602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 80
Length of query: 391
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 296
Effective length of database: 4,049,298
Effective search space: 1198592208
Effective search space used: 1198592208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.4 bits)