BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14913
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPL--YKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRF 58
GY + +PFL++ + V N + PL YK ++ ++P IG+ F MFD Q +
Sbjct: 273 GYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWY 331
Query: 59 FLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESP 118
++ G + LPSK EM AD+ + KE M+ Y+ +L M S
Sbjct: 332 ARDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSF 388
Query: 119 VPPVLLKIYFESFARRCEDFTAFRKDKYKII 149
P K + E + E+ FR Y+ +
Sbjct: 389 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 419
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPL--YKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRF 58
GY + +PFL++ + V N + PL YK ++ ++P IG+ F MFD Q +
Sbjct: 273 GYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWY 331
Query: 59 FLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESP 118
++ G + LPSK EM AD+ + KE M+ Y+ +L M S
Sbjct: 332 ARDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSF 388
Query: 119 VPPVLLKIYFESFARRCEDFTAFRKDKYKII 149
P K + E + E+ FR Y+ +
Sbjct: 389 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 419
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPL--YKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRF 58
GY + +PFL++ + V N + PL YK ++ ++P IG+ F MFD Q +
Sbjct: 278 GYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWY 336
Query: 59 FLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESP 118
++ G + LPSK EM AD+ + KE M+ Y+ +L M S
Sbjct: 337 ARDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSF 393
Query: 119 VPPVLLKIYFESFARRCEDFTAFRKDKYKII 149
P K + E + E+ FR Y+ +
Sbjct: 394 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 424
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPL--YKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRF 58
GY + +PFL++ + V N + PL YK ++ ++P IG+ F MFD Q +
Sbjct: 278 GYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWY 336
Query: 59 FLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESP 118
++ G + LPSK EM AD+ + KE M+ Y+ +L M S
Sbjct: 337 ARDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSF 393
Query: 119 VPPVLLKIYFESFARRCEDFTAFRKDKYKII 149
P K + E + E+ FR Y+ +
Sbjct: 394 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 424
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPL--YKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRF 58
GY + +PFL++ + V N + PL YK ++ ++P IG+ F MFD Q +
Sbjct: 278 GYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWY 336
Query: 59 FLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESP 118
++ G + LPSK EM AD+ + KE M+ Y+ +L M S
Sbjct: 337 ARDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSF 393
Query: 119 VPPVLLKIYFESFARRCEDFTAFRKDKYKII 149
P K + E + E+ FR Y+ +
Sbjct: 394 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 424
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPL--YKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRF 58
GY + +PFL++ + V N + PL YK ++ ++P IG+ F MFD Q +
Sbjct: 278 GYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWY 336
Query: 59 FLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESP 118
++ G + LPSK EM AD+ + KE M+ Y+ +L M S
Sbjct: 337 ARDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSF 393
Query: 119 VPPVLLKIYFESFARRCEDFTAFRKDKYKII 149
P K + E + E+ FR Y+ +
Sbjct: 394 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 424
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 6/151 (3%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPL--YKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRF 58
GY + +PFL++ + V N + PL YK ++ ++P IG F FD Q +
Sbjct: 273 GYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGXQDQWYSFNXFDAQAWY 331
Query: 59 FLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESP 118
++ G + LPSK E AD+ KE + Y+ +L S
Sbjct: 332 ARDVIXGRLPLPSKEEXKADS---XAWREKELTLVTAEEXYTYQGDYIQNLIDXTDYPSF 388
Query: 119 VPPVLLKIYFESFARRCEDFTAFRKDKYKII 149
P K + E + E+ FR Y+ +
Sbjct: 389 DIPATNKTFLEWKHHKKENIXTFRDHSYRSL 419
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 1 GYTYRYPFLH----ESCGINVVNKN--VQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDL 54
GY Y PF +S +++ V +Y+H+ I P++ +G+ V F
Sbjct: 289 GYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQA 348
Query: 55 QVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMR 114
Q F ++ G + LPSK E L D+ + + H+ + + + Y+N L +
Sbjct: 349 QAAFLARVWSGRLKLPSKEEQLKWQDELXFSLSGANNXYHS-LDYPKDATYINKLHDWCK 407
Query: 115 GESPV 119
+PV
Sbjct: 408 QATPV 412
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 1 GYTYRYPFLH----ESCGINVVNKN--VQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDL 54
GY Y PF +S +++ V +Y+H+ I P++ +G+ V F
Sbjct: 291 GYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQA 350
Query: 55 QVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMR 114
Q F ++ G + LPSK E L D+ + + H+ + + + Y+N L +
Sbjct: 351 QAAFLARVWSGRLKLPSKEEQLKWQDELXFSLSGANNXYHS-LDYPKDATYINKLHDWCK 409
Query: 115 GESPV 119
+PV
Sbjct: 410 QATPV 414
>pdb|4EP6|A Chain A, Crystal Structure Of The Xpla Heme Domain In Complex With
Imidazole And Peg
Length = 392
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 123 LLKIYFESFARRCEDFTAFRKD---KYKIINEKVFVREP 158
L+ E FARR E FTAFR D + IINE V + P
Sbjct: 239 LIASGIELFARRPEVFTAFRNDESARAAIINEMVRMDPP 277
>pdb|2WIV|A Chain A, Cytochrome-P450 Xpla Heme Domain P21
pdb|2WIV|B Chain B, Cytochrome-P450 Xpla Heme Domain P21
pdb|2WIY|A Chain A, Cytochrome P450 Xpla Heme Domain P21212
Length = 394
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 123 LLKIYFESFARRCEDFTAFRKD---KYKIINEKVFVREP 158
L+ E FARR E FTAFR D + IINE V + P
Sbjct: 241 LIASGIELFARRPEVFTAFRNDESARAAIINEMVRMDPP 279
>pdb|1VZV|A Chain A, Structure Of Varicella-Zoster Virus Protease
Length = 221
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 17 VVNKNVQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMK 64
+V + P K INI+H C++G V+ + D++ FFL +++
Sbjct: 25 IVRSALPPTSKIPINIDHRKDCVVG----EVIAIIEDIRGPFFLGIVR 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,919,871
Number of Sequences: 62578
Number of extensions: 179289
Number of successful extensions: 430
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 12
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)