Query psy14913
Match_columns 166
No_of_seqs 155 out of 1207
Neff 8.4
Searched_HMMs 46136
Date Sat Aug 17 00:08:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 4.2E-38 9.1E-43 269.0 4.5 156 1-162 329-488 (531)
2 PLN02172 flavin-containing mon 100.0 1.4E-33 3E-38 237.9 14.3 163 1-164 285-453 (461)
3 KOG1399|consensus 99.8 1.6E-19 3.5E-24 151.4 6.4 152 1-162 266-421 (448)
4 COG0386 BtuE Glutathione perox 40.8 8.5 0.00018 28.2 -0.2 28 2-32 87-114 (162)
5 PF08262 Lem_TRP: Leucophaea m 34.1 16 0.00034 14.0 0.2 8 35-42 2-9 (10)
6 COG2081 Predicted flavoprotein 19.9 74 0.0016 27.0 1.9 38 30-67 364-402 (408)
7 TIGR00275 flavoprotein, HI0933 19.7 1.2E+02 0.0026 25.3 3.1 36 31-66 364-400 (400)
8 KOG0324|consensus 19.3 3.4E+02 0.0075 21.0 5.2 64 58-127 74-137 (214)
9 TIGR03862 flavo_PP4765 unchara 18.2 84 0.0018 26.3 1.9 38 29-66 331-369 (376)
10 PF06681 DUF1182: Protein of u 18.1 1E+02 0.0022 23.8 2.2 40 29-68 71-110 (226)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=4.2e-38 Score=268.96 Aligned_cols=156 Identities=28% Similarity=0.479 Sum_probs=79.8
Q ss_pred CcccccCCCCCCCCceecCCccccccccccccC--CCCeeEeecccccc-hhhHHHHHHHHHHHHHcCCCCCCCHHHHhH
Q psy14913 1 GYTYRYPFLHESCGINVVNKNVQPLYKHLINIE--HPSMCIIGIPGDTV-VFYMFDLQVRFFLQLMKGYVTLPSKAEMLA 77 (166)
Q Consensus 1 GY~~~fPFL~~~~~l~~~~~~v~~Ly~~if~~~--~PsLaFiG~~~~~~-~~~~~ElQA~~~a~~~~G~~~LPs~~em~~ 77 (166)
||+++||||++++ +...++.+ +||||||||+ +|||||||++++.+ +||++|+||||+|+||+|+.+||++++|++
T Consensus 329 GY~~~fpFL~~~~-~~~~~~~~-~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~ 406 (531)
T PF00743_consen 329 GYKFSFPFLDESL-IKVDDNRV-RLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMME 406 (531)
T ss_dssp -EE---TTB-TTT-T-S-SSSS-SEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHH
T ss_pred ccccccccccccc-cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999886 55556667 7999999985 69999999999874 799999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCcceecccchHHHHHHHHHHhcCCCCChHHHHH-HHHhHHHHHhhhcCCCCCCceEecCCCcccc
Q psy14913 78 DTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLK-IYFESFARRCEDFTAFRKDKYKIINEKVFVR 156 (166)
Q Consensus 78 ~~~~~~~~~~~~~~~r~~h~~~~~~~~Y~~~L~~~~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~yrl~~~~~~~~ 156 (166)
+++++.+++.+++.....|...+++..|+|+||+++ |+.| ..++ +++||.+++..+|||+.|++|||+|||+|++
T Consensus 407 ~i~~~~~~~~~~~~~~~~~~~~~d~~~y~deLA~~i-G~~P---~~~~l~~~dp~l~~~~~~gp~~p~~YRL~Gpg~w~g 482 (531)
T PF00743_consen 407 EIEEEQEWRAKRFGFSPRHTIQVDYIDYMDELAREI-GCKP---NFWKLFLTDPKLARKLYFGPCTPYQYRLFGPGKWPG 482 (531)
T ss_dssp HHHHHHHHHHT--SHHHHHHHHHHHHHHHHTTS-----------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc-cccc---cccccccccccccccccccccccccccccccccccc
Confidence 999887766555422223446789999999999999 9988 3333 4589999999999999999999999999999
Q ss_pred cccccc
Q psy14913 157 EPGAAK 162 (166)
Q Consensus 157 ~~~~~~ 162 (166)
|++||.
T Consensus 483 ar~ail 488 (531)
T PF00743_consen 483 AREAIL 488 (531)
T ss_dssp ------
T ss_pred cccccc
Confidence 999994
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.4e-33 Score=237.95 Aligned_cols=163 Identities=25% Similarity=0.419 Sum_probs=141.8
Q ss_pred CcccccCCCCCCCCceecCCccccccccccccCC-CCeeEeecccccchhhHHHHHHHHHHHHHcCCCCCCCHHHHhHhH
Q psy14913 1 GYTYRYPFLHESCGINVVNKNVQPLYKHLINIEH-PSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADT 79 (166)
Q Consensus 1 GY~~~fPFL~~~~~l~~~~~~v~~Ly~~if~~~~-PsLaFiG~~~~~~~~~~~ElQA~~~a~~~~G~~~LPs~~em~~~~ 79 (166)
||+++||||+....+.++++++.+||+|||+|+. |||+|||++..+++|+++|+||+|+|++|+|+.+|||.++|++++
T Consensus 285 Gy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~ 364 (461)
T PLN02172 285 GYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDI 364 (461)
T ss_pred cCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence 8999999998654366788889899999999974 999999999777899999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CCCcceecccchHHHHHHHHHHhcCCCCChHHHHHHHHhHHHHHhhhcCCCCCC----ceEecCCCcc
Q psy14913 80 DQDIRAHRKES-QSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAFRKD----KYKIINEKVF 154 (166)
Q Consensus 80 ~~~~~~~~~~~-~~r~~h~~~~~~~~Y~~~L~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~yrl~~~~~~ 154 (166)
+++.+.+...| ++|++|.+...+.+|+|+|++.+ |+.|.++|+++|+......+..+...||+. ++++.+.+.+
T Consensus 365 ~~~~~~~~~~g~~~r~~h~~~~~~~~y~~~la~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 443 (461)
T PLN02172 365 NAWYASLEALGIPKRYTHKLGKIQSEYLNWIAEEC-GCPLVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEAYEDF 443 (461)
T ss_pred HHHHHHHHhcCCCCceeEEcCccHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHhCHHhhccccccccceeeccccc
Confidence 99888766667 77889988778999999999999 999999999999999999999999999998 7777776665
Q ss_pred ccccccccCC
Q psy14913 155 VREPGAAKYP 164 (166)
Q Consensus 155 ~~~~~~~~~~ 164 (166)
.+..----+|
T Consensus 444 ~~~~~~~~~~ 453 (461)
T PLN02172 444 ARKKLISSHP 453 (461)
T ss_pred ceEEEeecCh
Confidence 5544333333
No 3
>KOG1399|consensus
Probab=99.78 E-value=1.6e-19 Score=151.40 Aligned_cols=152 Identities=26% Similarity=0.397 Sum_probs=125.2
Q ss_pred CcccccCCCCCCCCceecCCccccccccccccCC-CCeeEeecccccchhhHHHHHHHHHHHHHcCCCCCCCHHHHhHhH
Q psy14913 1 GYTYRYPFLHESCGINVVNKNVQPLYKHLINIEH-PSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADT 79 (166)
Q Consensus 1 GY~~~fPFL~~~~~l~~~~~~v~~Ly~~if~~~~-PsLaFiG~~~~~~~~~~~ElQA~~~a~~~~G~~~LPs~~em~~~~ 79 (166)
||.++||||+........++.+.+||+++|++.. |++.|+|+....++|+.+|+||+|++++++|..+||+.++|+.+.
T Consensus 266 gy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~ 345 (448)
T KOG1399|consen 266 GYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDG 345 (448)
T ss_pred eeEeecceeccCCceeeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhh
Confidence 8999999999876444566677799999999974 677888887766789999999999999999999999999999999
Q ss_pred HHHHHHHhhcC--CCCcceeccc-chHHHHHHHHHHhcCCCCChHHHHHHHHhHHHHHhhhcCCCCCCceEecCCCcccc
Q psy14913 80 DQDIRAHRKES--QSTHTHVMHL-RSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAFRKDKYKIINEKVFVR 156 (166)
Q Consensus 80 ~~~~~~~~~~~--~~r~~h~~~~-~~~~Y~~~L~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~yrl~~~~~~~~ 156 (166)
.+....+...+ ..+++|.+.. .+..|..+++... |+...++| +....+.|+.+++.+++++++.|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~~~~~~-g~~~~~~~---------~~~~~~~g~~~~y~~~~~~~~~w~g 415 (448)
T KOG1399|consen 346 QEKYEKLDAVGLATGRHTHVPDYDELAEYINWFADLC-GFPKTEPW---------LAKEGWKGPCGLYAYGLTGPDKWDG 415 (448)
T ss_pred hhhhhhhhhhcccccccccccchHHHHHHhhhhhhhc-CCCCcchH---------HhhhhccCccceeEeecccCccccc
Confidence 88776555555 4778876543 5788888888888 87653333 4456889999999999999999999
Q ss_pred cccccc
Q psy14913 157 EPGAAK 162 (166)
Q Consensus 157 ~~~~~~ 162 (166)
+..+|+
T Consensus 416 ~~~~~~ 421 (448)
T KOG1399|consen 416 AAKLIL 421 (448)
T ss_pred HHHHHH
Confidence 977765
No 4
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=40.76 E-value=8.5 Score=28.22 Aligned_cols=28 Identities=39% Similarity=0.715 Sum_probs=21.6
Q ss_pred cccccCCCCCCCCceecCCcccccccccccc
Q psy14913 2 YTYRYPFLHESCGINVVNKNVQPLYKHLINI 32 (166)
Q Consensus 2 Y~~~fPFL~~~~~l~~~~~~v~~Ly~~if~~ 32 (166)
|..+||.++. +.+++...+|||++...-
T Consensus 87 YgVtFp~f~K---i~VnG~~a~PLy~~L~~~ 114 (162)
T COG0386 87 YGVTFPMFSK---IDVNGKNAHPLYKYLKEQ 114 (162)
T ss_pred cCceeeeeeE---EeecCCCCCcHHHHHHhc
Confidence 5667888764 667888888999998764
No 5
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=34.09 E-value=16 Score=14.04 Aligned_cols=8 Identities=50% Similarity=0.833 Sum_probs=5.0
Q ss_pred CCeeEeec
Q psy14913 35 PSMCIIGI 42 (166)
Q Consensus 35 PsLaFiG~ 42 (166)
|+|.|-|+
T Consensus 2 psmgf~g~ 9 (10)
T PF08262_consen 2 PSMGFHGM 9 (10)
T ss_pred Cccccccc
Confidence 56666664
No 6
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=19.87 E-value=74 Score=27.03 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=30.5
Q ss_pred cccCCCCeeEeeccccc-chhhHHHHHHHHHHHHHcCCC
Q psy14913 30 INIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLMKGYV 67 (166)
Q Consensus 30 f~~~~PsLaFiG~~~~~-~~~~~~ElQA~~~a~~~~G~~ 67 (166)
-.-..|.|+|+|=+-.+ +.---+-+|+.|++.+.+|+.
T Consensus 364 esk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~ 402 (408)
T COG2081 364 ESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQG 402 (408)
T ss_pred HhhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHh
Confidence 34457999999976665 677889999999999998854
No 7
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=19.73 E-value=1.2e+02 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=29.9
Q ss_pred ccCCCCeeEeeccccc-chhhHHHHHHHHHHHHHcCC
Q psy14913 31 NIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 66 (166)
Q Consensus 31 ~~~~PsLaFiG~~~~~-~~~~~~ElQA~~~a~~~~G~ 66 (166)
+...|+|+|+|=+-.+ +.---+-+|..|.+.+++|+
T Consensus 364 ~k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 364 SKLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred hcCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhcC
Confidence 4567999999966655 67788999999999999884
No 8
>KOG0324|consensus
Probab=19.35 E-value=3.4e+02 Score=20.96 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=37.3
Q ss_pred HHHHHHcCCCCCCCHHHHhHhHHHHHHHHhhcCCCCcceecccchHHHHHHHHHHhcCCCCChHHHHHHH
Q psy14913 58 FFLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIY 127 (166)
Q Consensus 58 ~~a~~~~G~~~LPs~~em~~~~~~~~~~~~~~~~~r~~h~~~~~~~~Y~~~L~~~~~g~~p~~~~~~~~~ 127 (166)
+--.+.-|...+|. ++.+.+.+... +.+.....|.+.-.--.++++|+..+ .-.++|.|+..+-
T Consensus 74 fr~sI~lG~Td~~~--~~v~~~le~L~---~ey~G~~YhL~~kNCNHFsn~la~~L-tgk~IP~winrLa 137 (214)
T KOG0324|consen 74 FRKSILLGSTDLTE--DDVRRILEELS---EEYRGNSYHLLTKNCNHFSNELALQL-TGKKIPSWVNRLA 137 (214)
T ss_pred eeEEEEecCCCCCH--HHHHHHHHHHH---hhcCCceehhhhhccchhHHHHHHHH-cCCCccHHHHHHH
Confidence 33445567777763 23333333322 22233344545555667899999988 6677888877643
No 9
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=18.20 E-value=84 Score=26.35 Aligned_cols=38 Identities=18% Similarity=0.026 Sum_probs=31.7
Q ss_pred ccccCCCCeeEeeccccc-chhhHHHHHHHHHHHHHcCC
Q psy14913 29 LINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 66 (166)
Q Consensus 29 if~~~~PsLaFiG~~~~~-~~~~~~ElQA~~~a~~~~G~ 66 (166)
+-+...|+|+|+|=+-.+ +.---+-+|..|.+.+++|+
T Consensus 331 ~~Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~ 369 (376)
T TIGR03862 331 LMLKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGR 369 (376)
T ss_pred hhcccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 446678999999966655 67788999999999999984
No 10
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=18.11 E-value=1e+02 Score=23.84 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=33.3
Q ss_pred ccccCCCCeeEeecccccchhhHHHHHHHHHHHHHcCCCC
Q psy14913 29 LINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVT 68 (166)
Q Consensus 29 if~~~~PsLaFiG~~~~~~~~~~~ElQA~~~a~~~~G~~~ 68 (166)
++.--.+|+.|+++..-+..+|..=.|+-.+--+|+|+.+
T Consensus 71 l~~~~ksTIvFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep 110 (226)
T PF06681_consen 71 LIRSYKSTIVFATFGQFVLTLPLYLFQTWLVFFLWFGHEP 110 (226)
T ss_pred HHHhhcCeEEEeeHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3333458999999999988999999999999999998643
Done!