RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14913
(166 letters)
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 71.8 bits (176), Expect = 3e-15
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPLYKHLINIE-HPSMCIIGIPGDTVVFYMFDLQVRFF 59
GY Y +PFL + + + V+PLYKH+ P + IG+P + F MF++Q ++
Sbjct: 285 GYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWV 344
Query: 60 LQLMKGYVTLPSKAEMLADTDQDIRAHRKESQS-----THTHVMHLRSEKYLNSLASMMR 114
++ G VTLPS+ +M+ +DI A ++ +TH + +YLN +A
Sbjct: 345 AAVLSGRVTLPSEDKMM----EDINAWYASLEALGIPKRYTHKLGKIQSEYLNWIAE--- 397
Query: 115 GESPVPPV 122
E P V
Sbjct: 398 -ECGCPLV 404
>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like. This
family includes FMO proteins, cyclohexanone
mono-oxygenase and a number of different
mono-oxygenases.
Length = 532
Score = 56.4 bits (136), Expect = 7e-10
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 1 GYTYRYPFLHESCGINVVNKNVQPLYKHLI--NIEHPSMCIIGIPGDT-VVFYMFDLQVR 57
GYT+ +PFL ES + V + LYK++ N+E P++ IIG+ + +LQ R
Sbjct: 329 GYTFSFPFLEESL-VKVETNKIS-LYKYVFPPNLEKPTLAIIGLIQPLGSIIPTVELQAR 386
Query: 58 FFLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGES 117
+ +++ KG LPS ++M+ + + K + + + Y++ LA+ + +
Sbjct: 387 WAVRVFKGLCKLPSSSKMMEEITEKKEKKIKRFGFSQSSTIQTDYIAYMDELAAFIGAKP 446
Query: 118 PVPPVLLK 125
+P + L
Sbjct: 447 NLPSLFLT 454
>gnl|CDD|184100 PRK13509, PRK13509, transcriptional repressor UlaR; Provisional.
Length = 251
Score = 27.7 bits (62), Expect = 3.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 11 ESCGINV-VNKNVQPLYKHLINIEHPSMCIIG 41
E CG V + N PL +LI+ EH S+ I+G
Sbjct: 111 ELCGKPVQIITNYLPLANYLIDQEHDSVIIMG 142
>gnl|CDD|225134 COG2224, AceA, Isocitrate lyase [Energy production and conversion].
Length = 433
Score = 27.7 bits (62), Expect = 3.6
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 51 MFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKES 90
MF+L + + MK YV + + A+ H++E
Sbjct: 363 MFELARAYAQEGMKAYVEVQEREFAAAEDGYTAVKHQREV 402
>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational
modification, protein turnover, chaperones].
Length = 162
Score = 26.4 bits (59), Expect = 5.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 15 INVVNKNVQPLYKHLIN 31
I+V KN PLYK+L
Sbjct: 97 IDVNGKNAHPLYKYLKE 113
>gnl|CDD|107274 cd06279, PBP1_LacI_like_3, Ligand-binding domain of uncharacterized
DNA-binding regulatory proteins that are members of the
LacI-GalR family of bacterial transcription repressors.
This group includes the ligand-binding domain of
uncharacterized DNA-binding regulatory proteins that are
members of the LacI-GalR family of bacterial
transcription repressors. The LacI-GalR family
repressors are composed of two functional domains: an
N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal ligand-binding domain, which is homologous to
the sugar-binding domain of ABC-type transport systems
that contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 283
Score = 26.8 bits (60), Expect = 5.6
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 32/96 (33%)
Query: 27 KHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAH 86
+HL+++ H + I+G+ L R
Sbjct: 109 RHLLDLGHRRIGILGLR--------------------------------LGRDRNTGRVT 136
Query: 87 RKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPV 122
+ S V R E YL +L S VP
Sbjct: 137 DERLASATFSVARERLEGYLEALEEAGIDISDVPIW 172
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 27.1 bits (60), Expect = 6.2
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 67 VTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKI 126
++ P+ A+++A + AH + V +L++ SL + G S VPP+L+K
Sbjct: 259 LSAPTLAKIIATAMPRV-AHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKA 317
Query: 127 YFESF 131
+ E +
Sbjct: 318 WEERY 322
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 27.1 bits (60), Expect = 6.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 121 PVLLKIYFESFARRCEDFTAFRKDKYKIIN 150
P ++I ES R C++F ++D KII+
Sbjct: 78 PYSIRILLESAIRNCDNFQVTKEDVEKIID 107
>gnl|CDD|177588 PHA03347, PHA03347, uracil DNA glycosylase; Provisional.
Length = 252
Score = 26.6 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 107 NSLASMMRGESPVPPVLLKIYFESFARRCEDFTA 140
N LA + PVPP L I+ E R DF+
Sbjct: 95 NGLAFSVAYGFPVPPSLRNIFAE-LHRSVPDFSP 127
>gnl|CDD|181427 PRK08445, PRK08445, hypothetical protein; Provisional.
Length = 348
Score = 26.2 bits (58), Expect = 9.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 64 KGYVTLP-SKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRG 115
KG ++P + AE+L+D +DI A +K V + S A+MM G
Sbjct: 153 KGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFG 205
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.417
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,510,680
Number of extensions: 757340
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 18
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (24.9 bits)