RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14913
(166 letters)
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 117 bits (294), Expect = 9e-32
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Query: 1 GYTYRYPFLHESCGINVVNKN-VQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFF 59
GY + +PFL++ + N+ LYK ++ ++P IG+ F MFD Q +
Sbjct: 273 GYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYA 332
Query: 60 LQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPV 119
++ G + LPSK EM AD+ KE M+ Y+ +L M S
Sbjct: 333 RDVIMGRLPLPSKEEMKADSMAWR---EKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFD 389
Query: 120 PPVLLKIYFESFARRCEDFTAFRKDKYKIINEKVFVRE 157
P K + E + E+ FR Y+ + +
Sbjct: 390 IPATNKTFLEWKHHKKENIMTFRDHSYRSLMTGTMAPK 427
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 101 bits (254), Expect = 3e-26
Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 9/160 (5%)
Query: 1 GYTYRYPFLHES------CGINVVNKNVQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDL 54
GY Y PF + + +V +Y+H+ I P++ +G+ V F
Sbjct: 289 GYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQA 348
Query: 55 QVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMR 114
Q F ++ G + LPSK E L D+ + + + H+ + + + Y+N L +
Sbjct: 349 QAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHS-LDYPKDATYINKLHDWCK 407
Query: 115 GESPVPPVLL--KIYFESFARRCEDFTAFRKDKYKIINEK 152
+PV + E E+ + R + I K
Sbjct: 408 QATPVLEEEFPSPYWGEKERSIRENMWSIRAKFFGIEPPK 447
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 2e-04
Identities = 27/175 (15%), Positives = 60/175 (34%), Gaps = 40/175 (22%)
Query: 11 ESCGINVVN-KNVQPLYKHL------INIEHPSMCII--GIPGDTVVFYMFDLQVRFFL- 60
ES +NV+ + ++ L +I + +I + V+ + L +
Sbjct: 360 ESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 61 -QLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPV 119
Q + +++P +++ + + H ++ + Y ++ + +
Sbjct: 419 KQPKESTISIP-------SIYLELKVKLENEYALHRSIV----DHY--NIPKTFDSDDLI 465
Query: 120 PPVLLKIYFESF-------ARRCEDFTAFRK---D----KYKIINEKVFVREPGA 160
PP L + YF S E T FR D + KI ++ G+
Sbjct: 466 PPYLDQ-YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Score = 32.9 bits (74), Expect = 0.046
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 53 DLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHR-------KESQSTHTHVMHLRSEKY 105
+ + + K ++ ++ D R K+ + V + Y
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 106 LNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF------RKDKYKIINEKVFVREPG 159
L S ++ E P ++ ++Y E R D F R Y + + + P
Sbjct: 92 -KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Score = 31.0 bits (69), Expect = 0.20
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 28 HLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHR 87
HL NIEHP +F M L RF Q ++ T + + + +T Q ++ ++
Sbjct: 480 HLKNIEHP--------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 88 KESQSTHTHVMHLRSEKYLNSL 109
+ + E+ +N++
Sbjct: 532 P-----YICDNDPKYERLVNAI 548
Score = 28.3 bits (62), Expect = 1.6
Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 29/107 (27%)
Query: 69 LPSKAE--------MLADTDQDIRAH----RKESQSTHTHVM-----HLRSE---KYLNS 108
LP + ++A++ +D A + + T ++ L K +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 109 LASMMRGESPVPPVLLKIYF--------ESFARRCEDFTAFRKDKYK 147
L+ + + +P +LL + + + ++ K +
Sbjct: 378 LS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
>4dey_B Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 1vyt_E
Length = 106
Score = 27.8 bits (61), Expect = 0.92
Identities = 13/73 (17%), Positives = 29/73 (39%)
Query: 63 MKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPV 122
+KGY+ ++AE + ++D ++ ++ S N + GE+ +
Sbjct: 31 LKGYLDWITQAEDIDPENEDEGMDEEKPRNMSMPTSETESVNTENVAGGDIEGENCGARL 90
Query: 123 LLKIYFESFARRC 135
+I F+R
Sbjct: 91 AHRISKSKFSRYW 103
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas
syringae PV. tomato STR. DC3000, structural genomics,
PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Length = 203
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 94 HTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 141
+ +L +L LA ++ G + P +++ R E F+A+
Sbjct: 91 WGKMRNLTDSSFL-DLARVVVGATIHSPERAQVWLARINEREETFSAW 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.417
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,568,168
Number of extensions: 140781
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 12
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.7 bits)