RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14913
         (166 letters)



>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
           SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
          Length = 335

 Score = 65.8 bits (159), Expect = 5e-14
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 3/144 (2%)

Query: 7   PFLHESCGINVVNKNVQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGY 66
                   +     +V  +Y+H+  I  P++  +G+    V F     Q  F  ++  G 
Sbjct: 192 KLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGR 251

Query: 67  VTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLL-- 124
           + LPSK E L   D+ + +    +   H  + + +   Y+N L    +  +PV       
Sbjct: 252 LKLPSKEEQLKWQDELMFSLSGANNMYH-SLDYPKDATYINKLHDWCKQATPVLEEEFPS 310

Query: 125 KIYFESFARRCEDFTAFRKDKYKI 148
             + E      E+  + R   + I
Sbjct: 311 PYWGEKERSIRENMWSIRAKFFGI 334


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 25.7 bits (56), Expect = 1.3
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 61  QLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASM 112
            L+ G     +K+ +L      IR  +  +Q      + LR+   ++   S+
Sbjct: 30  DLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA--VHKSKSL 79


>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
           1, N-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 629

 Score = 25.4 bits (55), Expect = 4.1
 Identities = 7/30 (23%), Positives = 17/30 (56%)

Query: 121 PVLLKIYFESFARRCEDFTAFRKDKYKIIN 150
           P  +++  E+  R C++F   ++D   I++
Sbjct: 35  PFSIRVLLEAAIRNCDEFLVKKQDIENILH 64


>d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase
           {Xanthomonas citri [TaxId: 346]}
          Length = 381

 Score = 25.1 bits (53), Expect = 5.2
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 1   GYTYRYPFLHESCGINVVNKNVQPLYKHL-INIEHPSMCIIGIPGDTVVFYMFDLQVRFF 59
           G  + Y  +      N +N  V   ++H  +N +  ++  +   GDT   +  D+   FF
Sbjct: 290 GAIHSYAAMEPRDKRNTLNYLVMGPWRHSQVNYDGSALGALNFEGDTARQFRHDVLRPFF 349

Query: 60  LQLMKG 65
            Q +  
Sbjct: 350 DQYLVD 355


>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 193

 Score = 24.7 bits (53), Expect = 6.1
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 1   GYTYRYPFLHESCGINVVNK-NVQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQ 55
           G+T++   + E  G   +N       +  L     PS  ++ + G+ VV Y++DL+
Sbjct: 126 GHTHK-LRVFEKNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVLYVYDLR 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 634,646
Number of extensions: 27867
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 9
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)