BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14914
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 14 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 73
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 236 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 294
Query: 74 P--LYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQ 131
P LYK ++ ++P IG+ F MFD Q + ++ G + LPSK EM AD+
Sbjct: 295 PLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADS-- 352
Query: 132 DIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 191
+ KE M+ Y+ +L M S P K + E + E+ F
Sbjct: 353 -MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTF 411
Query: 192 RKDKYKII 199
R Y+ +
Sbjct: 412 RDHSYRSL 419
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 14 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 73
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 236 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 294
Query: 74 P--LYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQ 131
P LYK ++ ++P IG+ F MFD Q + ++ G + LPSK EM AD+
Sbjct: 295 PLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADS-- 352
Query: 132 DIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 191
+ KE M+ Y+ +L M S P K + E + E+ F
Sbjct: 353 -MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTF 411
Query: 192 RKDKYKII 199
R Y+ +
Sbjct: 412 RDHSYRSL 419
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 14 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 73
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 241 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 299
Query: 74 P--LYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQ 131
P LYK ++ ++P IG+ F MFD Q + ++ G + LPSK EM AD+
Sbjct: 300 PLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADS-- 357
Query: 132 DIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 191
+ KE M+ Y+ +L M S P K + E + E+ F
Sbjct: 358 -MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTF 416
Query: 192 RKDKYKII 199
R Y+ +
Sbjct: 417 RDHSYRSL 424
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 14 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 73
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 241 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 299
Query: 74 P--LYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQ 131
P LYK ++ ++P IG+ F MFD Q + ++ G + LPSK EM AD+
Sbjct: 300 PLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADS-- 357
Query: 132 DIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 191
+ KE M+ Y+ +L M S P K + E + E+ F
Sbjct: 358 -MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTF 416
Query: 192 RKDKYKII 199
R Y+ +
Sbjct: 417 RDHSYRSL 424
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 14 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 73
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 241 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 299
Query: 74 P--LYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQ 131
P LYK ++ ++P IG+ F MFD Q + ++ G + LPSK EM AD+
Sbjct: 300 PLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADS-- 357
Query: 132 DIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 191
+ KE M+ Y+ +L M S P K + E + E+ F
Sbjct: 358 -MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTF 416
Query: 192 RKDKYKII 199
R Y+ +
Sbjct: 417 RDHSYRSL 424
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 14 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 73
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 241 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 299
Query: 74 P--LYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQ 131
P LYK ++ ++P IG+ F MFD Q + ++ G + LPSK EM AD+
Sbjct: 300 PLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADS-- 357
Query: 132 DIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 191
+ KE M+ Y+ +L M S P K + E + E+ F
Sbjct: 358 -MAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTF 416
Query: 192 RKDKYKII 199
R Y+ +
Sbjct: 417 RDHSYRSL 424
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 6/188 (3%)
Query: 14 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 73
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 236 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 294
Query: 74 P--LYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQ 131
P LYK ++ ++P IG F FD Q + ++ G + LPSK E AD+
Sbjct: 295 PLNLYKGVVWEDNPKFFYIGXQDQWYSFNXFDAQAWYARDVIXGRLPLPSKEEXKADS-- 352
Query: 132 DIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 191
KE + Y+ +L S P K + E + E+ F
Sbjct: 353 -XAWREKELTLVTAEEXYTYQGDYIQNLIDXTDYPSFDIPATNKTFLEWKHHKKENIXTF 411
Query: 192 RKDKYKII 199
R Y+ +
Sbjct: 412 RDHSYRSL 419
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 23 PDIAELTPTG--VRFQDGS-YEQVDIILYCTGYTYRYPFLH----ESCGIKVVNKN--VQ 73
P+I + PT + + G +D ++YCTGY Y PF +S K+++ V
Sbjct: 260 PEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVH 319
Query: 74 PLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDI 133
+Y+H+ I P++ +G+ V F Q F ++ G + LPSK E L D+
Sbjct: 320 NVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELX 379
Query: 134 RAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPV 169
+ + H+ + + + Y+N L + +PV
Sbjct: 380 FSLSGANNXYHS-LDYPKDATYINKLHDWCKQATPV 414
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 23 PDIAELTPTG--VRFQDGS-YEQVDIILYCTGYTYRYPFLH----ESCGIKVVNKN--VQ 73
P+I + PT + + G +D ++YCTGY Y PF +S K+++ V
Sbjct: 258 PEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVH 317
Query: 74 PLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDI 133
+Y+H+ I P++ +G+ V F Q F ++ G + LPSK E L D+
Sbjct: 318 NVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELX 377
Query: 134 RAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPV 169
+ + H+ + + + Y+N L + +PV
Sbjct: 378 FSLSGANNXYHS-LDYPKDATYINKLHDWCKQATPV 412
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 23 PDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN--KNVQPLYKHLI 80
P A +PTG+++ DG+ D +++CTG+ P L G+ +V V+ L
Sbjct: 254 PPPARFSPTGMQWADGTERAFDAVIWCTGFR---PALSHLKGLDLVTPQGQVEVDGSGLR 310
Query: 81 NIEHPSMCIIG 91
+ PS+ ++G
Sbjct: 311 ALAVPSVWLLG 321
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 20 VKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 52
+++ I E+TP G++ D +Y+ +D+I+Y TG+
Sbjct: 358 IREAPIQEVTPEGIKTADAAYD-LDVIIYATGF 389
>pdb|4EP6|A Chain A, Crystal Structure Of The Xpla Heme Domain In Complex With
Imidazole And Peg
Length = 392
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 173 LLKIYFESFARRCEDFTAFRKD---KYKIINEKVFVREP 208
L+ E FARR E FTAFR D + IINE V + P
Sbjct: 239 LIASGIELFARRPEVFTAFRNDESARAAIINEMVRMDPP 277
>pdb|2WIV|A Chain A, Cytochrome-P450 Xpla Heme Domain P21
pdb|2WIV|B Chain B, Cytochrome-P450 Xpla Heme Domain P21
pdb|2WIY|A Chain A, Cytochrome P450 Xpla Heme Domain P21212
Length = 394
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 173 LLKIYFESFARRCEDFTAFRKD---KYKIINEKVFVREP 208
L+ E FARR E FTAFR D + IINE V + P
Sbjct: 241 LIASGIELFARRPEVFTAFRNDESARAAIINEMVRMDPP 279
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 19 VVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 52
+K+ I E+T GV +DG ++D++++ TG+
Sbjct: 382 AIKENPIREVTAKGVVTEDGVLHELDVLVFATGF 415
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 19 VVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 52
+K+ I E+T GV +DG ++D++++ TG+
Sbjct: 349 AIKENPIREVTAKGVVTEDGVLHELDVLVFATGF 382
>pdb|1VZV|A Chain A, Structure Of Varicella-Zoster Virus Protease
Length = 221
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 47 LYCTGYTYRYPFLHESCGI--KVVNKNVQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDL 104
LY GY Y I ++V + P K INI+H C++G V+ + D+
Sbjct: 3 LYVAGYLALYSKDEGELNITPEIVRSALPPTSKIPINIDHRKDCVVG----EVIAIIEDI 58
Query: 105 QVRFFLQLMK 114
+ FFL +++
Sbjct: 59 RGPFFLGIVR 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,708,372
Number of Sequences: 62578
Number of extensions: 261601
Number of successful extensions: 433
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 16
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)