Query psy14914
Match_columns 216
No_of_seqs 187 out of 1854
Neff 7.7
Searched_HMMs 46136
Date Sat Aug 17 00:10:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 3.9E-43 8.4E-48 325.1 6.9 197 9-211 281-487 (531)
2 PLN02172 flavin-containing mon 100.0 1.1E-37 2.5E-42 284.7 19.0 213 1-214 230-453 (461)
3 KOG1399|consensus 99.9 1.9E-22 4.1E-27 183.1 9.6 185 17-211 231-420 (448)
4 PTZ00318 NADH dehydrogenase-li 97.7 0.00017 3.6E-09 65.6 9.3 96 18-116 242-346 (424)
5 PRK13512 coenzyme A disulfide 97.3 0.00088 1.9E-08 61.2 7.9 96 18-116 203-312 (438)
6 TIGR03169 Nterm_to_SelD pyridi 97.2 0.0012 2.7E-08 58.3 7.8 94 18-114 205-307 (364)
7 PRK07846 mycothione reductase; 97.1 0.0028 6.1E-08 58.1 9.5 96 18-116 220-325 (451)
8 TIGR03385 CoA_CoA_reduc CoA-di 97.1 0.0014 3E-08 59.4 7.0 96 18-116 193-304 (427)
9 PRK04965 NADH:flavorubredoxin 97.1 0.0019 4.1E-08 57.6 7.6 95 18-116 197-302 (377)
10 PRK06116 glutathione reductase 96.9 0.0095 2.1E-07 54.4 10.7 97 18-116 222-328 (450)
11 PLN02507 glutathione reductase 96.9 0.0099 2.2E-07 55.3 10.9 96 18-116 258-363 (499)
12 COG1252 Ndh NADH dehydrogenase 96.9 0.0034 7.3E-08 57.0 7.5 98 18-117 223-331 (405)
13 TIGR01292 TRX_reduct thioredox 96.8 0.0045 9.8E-08 52.6 7.4 93 18-114 191-297 (300)
14 TIGR02374 nitri_red_nirB nitri 96.8 0.0047 1E-07 60.6 8.3 96 18-117 196-302 (785)
15 TIGR01421 gluta_reduc_1 glutat 96.8 0.012 2.6E-07 54.0 10.5 95 18-115 221-327 (450)
16 TIGR03452 mycothione_red mycot 96.7 0.013 2.9E-07 53.7 9.8 97 18-116 223-328 (452)
17 COG2072 TrkA Predicted flavopr 96.6 0.0061 1.3E-07 56.0 7.3 101 17-117 308-414 (443)
18 TIGR01424 gluta_reduc_2 glutat 96.5 0.03 6.4E-07 51.3 11.0 96 18-116 221-326 (446)
19 PRK07818 dihydrolipoamide dehy 96.5 0.027 5.8E-07 51.8 10.6 96 18-116 227-336 (466)
20 PRK07845 flavoprotein disulfid 96.3 0.045 9.8E-07 50.4 10.6 97 18-116 232-337 (466)
21 PRK09754 phenylpropionate diox 96.2 0.015 3.4E-07 52.2 7.3 95 18-117 200-310 (396)
22 TIGR01423 trypano_reduc trypan 96.2 0.046 9.9E-07 50.8 10.5 96 18-116 245-351 (486)
23 PRK06416 dihydrolipoamide dehy 96.2 0.032 7E-07 51.1 9.3 97 18-116 227-334 (462)
24 PTZ00052 thioredoxin reductase 96.1 0.059 1.3E-06 50.2 10.7 97 18-116 236-341 (499)
25 PRK05249 soluble pyridine nucl 96.1 0.053 1.1E-06 49.6 10.1 97 18-116 230-335 (461)
26 PRK09564 coenzyme A disulfide 95.9 0.029 6.3E-07 51.0 7.4 95 18-116 205-317 (444)
27 PRK14989 nitrite reductase sub 95.8 0.048 1E-06 54.1 9.2 96 18-117 201-311 (847)
28 PRK11749 dihydropyrimidine deh 95.5 0.12 2.5E-06 47.5 9.8 73 40-113 373-447 (457)
29 PRK06327 dihydrolipoamide dehy 95.4 0.12 2.7E-06 47.6 9.9 98 18-116 238-347 (475)
30 TIGR01438 TGR thioredoxin and 95.4 0.14 3E-06 47.6 10.2 96 18-115 234-343 (484)
31 TIGR01350 lipoamide_DH dihydro 95.4 0.12 2.7E-06 47.2 9.8 97 18-116 225-332 (461)
32 PRK06370 mercuric reductase; V 95.4 0.17 3.8E-06 46.4 10.7 97 18-116 226-334 (463)
33 PRK07251 pyridine nucleotide-d 95.1 0.23 4.9E-06 45.2 10.5 97 18-116 212-316 (438)
34 PRK06467 dihydrolipoamide dehy 95.1 0.14 3E-06 47.3 9.1 95 19-116 229-337 (471)
35 PRK06115 dihydrolipoamide dehy 95.1 0.19 4E-06 46.3 9.8 96 18-116 229-338 (466)
36 PRK06292 dihydrolipoamide dehy 94.9 0.18 3.8E-06 46.2 9.1 94 19-115 224-330 (460)
37 PTZ00153 lipoamide dehydrogena 94.9 0.2 4.4E-06 48.4 9.7 77 40-116 413-495 (659)
38 COG3486 IucD Lysine/ornithine 94.8 0.15 3.1E-06 46.3 8.0 102 18-119 292-416 (436)
39 PRK06912 acoL dihydrolipoamide 94.8 0.25 5.4E-06 45.3 9.8 96 18-116 225-330 (458)
40 PRK05976 dihydrolipoamide dehy 94.6 0.3 6.5E-06 44.9 9.9 97 18-116 235-343 (472)
41 PRK13748 putative mercuric red 94.6 0.38 8.3E-06 45.2 10.7 95 18-116 324-428 (561)
42 TIGR02053 MerA mercuric reduct 94.5 0.36 7.8E-06 44.2 10.3 96 18-116 221-329 (463)
43 PRK12810 gltD glutamate syntha 94.5 0.25 5.4E-06 45.6 9.1 79 40-119 386-470 (471)
44 PTZ00058 glutathione reductase 94.4 0.44 9.5E-06 45.2 10.6 96 18-116 292-432 (561)
45 PRK12771 putative glutamate sy 93.9 0.48 1E-05 44.8 10.0 73 40-113 366-439 (564)
46 PRK09853 putative selenate red 93.9 0.17 3.7E-06 51.0 7.0 78 38-118 763-842 (1019)
47 PLN02546 glutathione reductase 93.8 0.41 8.8E-06 45.4 9.1 96 18-116 307-413 (558)
48 PRK14694 putative mercuric red 93.7 0.56 1.2E-05 43.1 9.9 96 18-116 232-335 (468)
49 PRK14727 putative mercuric red 93.4 0.79 1.7E-05 42.4 10.2 95 18-116 242-346 (479)
50 PRK08010 pyridine nucleotide-d 93.1 0.87 1.9E-05 41.4 10.0 96 18-116 213-317 (441)
51 PRK12770 putative glutamate sy 92.5 0.56 1.2E-05 41.4 7.6 73 39-114 271-346 (352)
52 COG1249 Lpd Pyruvate/2-oxoglut 92.4 1.1 2.4E-05 41.4 9.6 89 24-115 236-334 (454)
53 TIGR01316 gltA glutamate synth 92.3 1.3 2.9E-05 40.6 10.0 71 40-114 373-446 (449)
54 COG1251 NirB NAD(P)H-nitrite r 92.1 0.17 3.6E-06 49.1 3.9 81 31-116 220-306 (793)
55 TIGR03315 Se_ygfK putative sel 92.1 0.55 1.2E-05 47.5 7.7 79 37-117 757-839 (1012)
56 PF13454 NAD_binding_9: FAD-NA 91.7 0.31 6.7E-06 38.0 4.5 37 16-52 112-155 (156)
57 PRK12831 putative oxidoreducta 91.2 1.3 2.8E-05 40.9 8.8 73 40-113 382-456 (464)
58 KOG1336|consensus 90.8 0.54 1.2E-05 43.4 5.7 74 18-94 269-350 (478)
59 PRK10262 thioredoxin reductase 90.8 0.55 1.2E-05 40.7 5.6 96 18-115 199-316 (321)
60 TIGR01318 gltD_gamma_fam gluta 90.4 1.3 2.7E-05 41.0 7.8 74 40-114 384-462 (467)
61 TIGR03140 AhpF alkyl hydropero 89.7 0.66 1.4E-05 43.4 5.5 90 18-112 402-507 (515)
62 PRK15317 alkyl hydroperoxide r 89.5 1.1 2.4E-05 41.8 6.8 89 18-110 401-504 (517)
63 PRK12814 putative NADPH-depend 89.1 2 4.4E-05 41.4 8.5 75 40-116 423-503 (652)
64 TIGR01317 GOGAT_sm_gam glutama 88.6 2.5 5.4E-05 39.3 8.4 71 40-112 400-473 (485)
65 PRK13984 putative oxidoreducta 87.2 1.6 3.5E-05 41.5 6.4 71 40-113 524-597 (604)
66 PRK12778 putative bifunctional 86.3 3.2 6.9E-05 40.7 8.1 73 40-114 672-746 (752)
67 TIGR03169 Nterm_to_SelD pyridi 85.9 1.2 2.6E-05 39.2 4.5 43 18-60 68-113 (364)
68 KOG2495|consensus 85.0 4.4 9.6E-05 37.3 7.6 95 18-115 287-394 (491)
69 COG2072 TrkA Predicted flavopr 84.8 2.3 5E-05 39.1 5.9 64 33-97 121-188 (443)
70 PRK07846 mycothione reductase; 81.2 3.1 6.7E-05 38.2 5.3 43 18-60 103-146 (451)
71 TIGR01292 TRX_reduct thioredox 80.7 3 6.5E-05 35.1 4.8 38 23-60 77-118 (300)
72 TIGR01372 soxA sarcosine oxida 80.7 6.1 0.00013 40.1 7.6 92 18-113 365-467 (985)
73 PF01134 GIDA: Glucose inhibit 80.1 2.2 4.8E-05 38.7 3.9 36 17-52 109-150 (392)
74 PRK12769 putative oxidoreducta 79.1 9.8 0.00021 36.7 8.2 74 40-114 570-648 (654)
75 PF13738 Pyr_redox_3: Pyridine 78.5 2.4 5.3E-05 33.7 3.3 30 23-52 103-136 (203)
76 PRK09754 phenylpropionate diox 78.1 5.3 0.00011 35.8 5.7 41 18-58 72-117 (396)
77 PRK12775 putative trifunctiona 77.6 8.2 0.00018 39.4 7.4 72 40-112 672-749 (1006)
78 TIGR01789 lycopene_cycl lycope 77.6 4 8.7E-05 36.5 4.8 37 18-54 102-138 (370)
79 PRK06116 glutathione reductase 76.9 3.7 8.1E-05 37.4 4.4 41 18-59 107-148 (450)
80 PRK12779 putative bifunctional 76.7 8.2 0.00018 39.1 7.1 80 40-120 548-629 (944)
81 PLN02546 glutathione reductase 74.1 5 0.00011 38.1 4.6 42 18-60 192-234 (558)
82 TIGR02374 nitri_red_nirB nitri 73.3 8.1 0.00018 38.2 6.0 42 18-59 68-113 (785)
83 PTZ00318 NADH dehydrogenase-li 73.0 5.6 0.00012 36.1 4.5 42 19-60 77-131 (424)
84 KOG3851|consensus 72.5 1.8 3.8E-05 38.6 1.1 48 13-60 101-151 (446)
85 PRK12809 putative oxidoreducta 72.1 16 0.00034 35.3 7.5 74 40-114 553-631 (639)
86 TIGR03143 AhpF_homolog putativ 71.7 15 0.00032 34.8 7.2 90 18-112 193-303 (555)
87 KOG2755|consensus 71.2 4 8.7E-05 35.4 2.9 34 23-56 71-106 (334)
88 KOG0405|consensus 69.6 21 0.00045 32.4 7.0 80 33-115 266-349 (478)
89 TIGR03452 mycothione_red mycot 69.4 7.7 0.00017 35.6 4.6 40 18-57 106-146 (452)
90 PRK14694 putative mercuric red 68.1 10 0.00022 34.9 5.1 42 18-59 111-157 (468)
91 PRK06847 hypothetical protein; 67.7 8.6 0.00019 33.7 4.5 32 24-55 129-164 (375)
92 COG1252 Ndh NADH dehydrogenase 67.1 8.8 0.00019 35.1 4.4 43 18-60 72-117 (405)
93 TIGR01424 gluta_reduc_2 glutat 67.0 9.6 0.00021 34.8 4.7 43 18-60 104-148 (446)
94 PTZ00058 glutathione reductase 65.8 12 0.00026 35.6 5.2 25 36-60 196-220 (561)
95 COG2081 Predicted flavoprotein 64.4 9.5 0.00021 34.7 4.0 35 18-52 125-165 (408)
96 KOG1336|consensus 64.2 11 0.00023 35.1 4.3 33 23-55 148-182 (478)
97 COG0446 HcaD Uncharacterized N 63.8 15 0.00033 32.1 5.2 96 19-116 193-310 (415)
98 PRK08849 2-octaprenyl-3-methyl 63.2 14 0.00029 32.9 4.9 38 18-55 125-168 (384)
99 PRK14989 nitrite reductase sub 63.1 18 0.00038 36.3 6.0 40 18-57 73-116 (847)
100 TIGR01421 gluta_reduc_1 glutat 62.3 12 0.00027 34.2 4.6 39 18-57 105-144 (450)
101 PRK09564 coenzyme A disulfide 62.2 15 0.00032 33.3 5.0 42 18-59 70-120 (444)
102 COG1249 Lpd Pyruvate/2-oxoglut 62.1 23 0.00051 32.8 6.3 106 18-135 108-226 (454)
103 TIGR02053 MerA mercuric reduct 61.6 13 0.00028 34.0 4.6 42 18-59 102-145 (463)
104 PRK04965 NADH:flavorubredoxin 61.6 14 0.0003 32.7 4.6 43 18-60 72-117 (377)
105 PLN02463 lycopene beta cyclase 61.0 15 0.00034 33.8 4.9 38 18-55 128-170 (447)
106 COG1148 HdrA Heterodisulfide r 60.9 12 0.00026 35.2 4.0 69 41-109 463-536 (622)
107 TIGR03364 HpnW_proposed FAD de 59.5 12 0.00027 32.7 3.9 36 18-54 160-197 (365)
108 PRK13512 coenzyme A disulfide 59.0 15 0.00031 33.5 4.4 43 18-60 72-123 (438)
109 PRK07333 2-octaprenyl-6-methox 57.9 19 0.00042 31.8 4.9 38 18-55 125-168 (403)
110 PRK13748 putative mercuric red 57.4 20 0.00043 33.7 5.1 43 18-60 203-250 (561)
111 PRK09126 hypothetical protein; 56.4 22 0.00048 31.3 5.0 38 18-55 125-168 (392)
112 PRK06370 mercuric reductase; V 56.2 20 0.00043 32.8 4.8 29 30-59 122-150 (463)
113 TIGR03385 CoA_CoA_reduc CoA-di 56.2 21 0.00046 32.1 5.0 43 18-60 58-109 (427)
114 PF01266 DAO: FAD dependent ox 55.8 6.8 0.00015 33.5 1.6 36 19-55 162-204 (358)
115 TIGR03219 salicylate_mono sali 55.2 17 0.00037 32.6 4.1 32 24-55 125-160 (414)
116 COG1251 NirB NAD(P)H-nitrite r 55.1 20 0.00042 35.3 4.6 42 17-61 72-117 (793)
117 PRK07588 hypothetical protein; 54.2 23 0.0005 31.3 4.8 40 17-56 115-160 (391)
118 PRK14727 putative mercuric red 54.0 25 0.00053 32.5 5.0 27 34-60 140-168 (479)
119 COG0492 TrxB Thioredoxin reduc 54.0 22 0.00047 31.1 4.4 79 24-113 82-166 (305)
120 COG2907 Predicted NAD/FAD-bind 53.9 13 0.00028 33.7 2.9 44 17-60 232-279 (447)
121 PRK08163 salicylate hydroxylas 52.6 28 0.0006 30.8 5.0 37 19-55 125-167 (396)
122 PLN02172 flavin-containing mon 52.1 53 0.0012 30.4 6.9 73 23-96 134-216 (461)
123 PRK09897 hypothetical protein; 52.0 17 0.00038 34.3 3.7 42 18-60 406-457 (534)
124 PF01593 Amino_oxidase: Flavin 52.0 12 0.00025 32.6 2.5 36 19-54 226-265 (450)
125 PF03486 HI0933_like: HI0933-l 51.7 22 0.00049 32.4 4.3 40 18-58 123-169 (409)
126 PRK08773 2-octaprenyl-3-methyl 51.3 30 0.00064 30.7 5.0 38 18-55 127-170 (392)
127 TIGR01988 Ubi-OHases Ubiquinon 50.8 29 0.00064 30.2 4.8 37 19-55 122-164 (385)
128 PLN02507 glutathione reductase 50.1 30 0.00065 32.2 5.0 43 18-60 138-185 (499)
129 TIGR01423 trypano_reduc trypan 49.8 28 0.00061 32.4 4.7 43 18-60 118-169 (486)
130 PTZ00153 lipoamide dehydrogena 49.8 27 0.0006 33.9 4.8 39 19-57 249-289 (659)
131 PRK08010 pyridine nucleotide-d 49.8 30 0.00066 31.3 4.9 43 18-60 91-137 (441)
132 PRK07045 putative monooxygenas 49.8 27 0.00059 30.8 4.5 38 18-55 121-166 (388)
133 PRK08020 ubiF 2-octaprenyl-3-m 49.6 34 0.00073 30.2 5.1 38 18-55 127-170 (391)
134 PRK05714 2-octaprenyl-3-methyl 49.3 29 0.00063 30.9 4.6 38 18-55 126-169 (405)
135 TIGR01984 UbiH 2-polyprenyl-6- 49.1 32 0.0007 30.1 4.9 38 18-55 120-163 (382)
136 TIGR01790 carotene-cycl lycope 48.9 32 0.00069 30.3 4.8 22 33-54 120-141 (388)
137 TIGR03197 MnmC_Cterm tRNA U-34 48.6 26 0.00056 31.0 4.2 33 23-55 155-191 (381)
138 TIGR01438 TGR thioredoxin and 47.9 35 0.00075 31.7 5.0 42 18-59 114-160 (484)
139 TIGR00562 proto_IX_ox protopor 46.9 28 0.0006 31.5 4.2 37 18-54 239-279 (462)
140 PRK05976 dihydrolipoamide dehy 46.4 24 0.00051 32.4 3.7 38 18-55 106-155 (472)
141 COG0492 TrxB Thioredoxin reduc 45.9 52 0.0011 28.7 5.5 75 18-95 193-276 (305)
142 PRK07251 pyridine nucleotide-d 45.6 33 0.00072 31.0 4.5 30 30-59 103-135 (438)
143 PRK06327 dihydrolipoamide dehy 45.2 38 0.00083 31.1 4.8 30 30-59 131-163 (475)
144 COG0654 UbiH 2-polyprenyl-6-me 45.1 41 0.00089 29.9 4.9 38 18-55 119-163 (387)
145 TIGR03140 AhpF alkyl hydropero 44.6 42 0.00092 31.3 5.1 42 18-59 281-328 (515)
146 PRK06467 dihydrolipoamide dehy 44.3 35 0.00077 31.4 4.5 43 18-60 107-155 (471)
147 PRK05868 hypothetical protein; 44.3 24 0.00053 31.3 3.3 39 17-55 117-161 (372)
148 PRK07845 flavoprotein disulfid 44.1 34 0.00074 31.4 4.3 38 18-55 106-152 (466)
149 PRK06753 hypothetical protein; 44.0 23 0.0005 31.0 3.1 32 24-55 118-153 (373)
150 PRK15317 alkyl hydroperoxide r 43.9 55 0.0012 30.5 5.7 41 19-59 281-327 (517)
151 TIGR02352 thiamin_ThiO glycine 43.9 19 0.00041 30.8 2.5 31 24-55 159-194 (337)
152 PRK06292 dihydrolipoamide dehy 43.8 32 0.00069 31.3 4.1 24 29-53 118-141 (460)
153 PF05834 Lycopene_cycl: Lycope 43.2 39 0.00084 30.1 4.4 34 22-55 106-143 (374)
154 PRK05249 soluble pyridine nucl 42.9 41 0.00089 30.6 4.6 40 18-57 108-152 (461)
155 KOG1346|consensus 42.8 31 0.00068 32.1 3.7 42 19-60 272-318 (659)
156 PLN02612 phytoene desaturase 42.6 41 0.00089 31.9 4.7 35 18-52 324-364 (567)
157 PF07992 Pyr_redox_2: Pyridine 42.5 8.1 0.00017 30.4 -0.1 24 37-60 105-128 (201)
158 KOG1346|consensus 42.4 23 0.00051 32.8 2.8 41 18-58 407-453 (659)
159 KOG1399|consensus 42.2 97 0.0021 28.7 6.9 63 33-96 128-198 (448)
160 PRK07236 hypothetical protein; 42.0 34 0.00073 30.3 3.9 32 24-55 120-155 (386)
161 PLN02852 ferredoxin-NADP+ redu 41.8 3E+02 0.0065 25.8 10.3 115 41-166 341-469 (491)
162 PRK06115 dihydrolipoamide dehy 41.6 33 0.00072 31.5 3.9 36 19-54 108-148 (466)
163 PF04820 Trp_halogenase: Trypt 40.8 21 0.00045 33.0 2.3 38 18-55 168-212 (454)
164 KOG0404|consensus 40.3 23 0.0005 30.2 2.3 78 25-115 92-182 (322)
165 TIGR00136 gidA glucose-inhibit 40.2 27 0.00058 33.8 3.0 23 32-54 132-154 (617)
166 PRK07403 glyceraldehyde-3-phos 39.8 29 0.00062 31.0 3.0 44 14-57 54-105 (337)
167 PRK11883 protoporphyrinogen ox 39.7 40 0.00087 30.2 4.0 36 18-53 235-274 (451)
168 PRK05192 tRNA uridine 5-carbox 39.1 27 0.00058 33.8 2.8 34 18-51 115-154 (618)
169 PTZ00052 thioredoxin reductase 38.2 45 0.00098 31.0 4.2 28 30-57 129-159 (499)
170 PF03199 GSH_synthase: Eukaryo 37.8 36 0.00078 25.0 2.8 29 27-55 47-75 (105)
171 PRK08013 oxidoreductase; Provi 37.8 57 0.0012 29.1 4.7 38 18-55 126-169 (400)
172 PTZ00188 adrenodoxin reductase 37.1 2.8E+02 0.0062 26.2 9.1 103 41-167 368-480 (506)
173 COG0665 DadA Glycine/D-amino a 36.8 45 0.00098 29.1 3.8 30 24-54 179-212 (387)
174 PRK06912 acoL dihydrolipoamide 36.6 51 0.0011 30.2 4.2 38 18-55 104-145 (458)
175 PRK09897 hypothetical protein; 36.6 47 0.001 31.4 4.1 30 24-53 131-165 (534)
176 COG4529 Uncharacterized protei 36.3 34 0.00073 31.9 2.9 24 33-56 143-166 (474)
177 TIGR03862 flavo_PP4765 unchara 36.3 55 0.0012 29.5 4.3 36 18-53 100-140 (376)
178 TIGR02730 carot_isom carotene 36.0 51 0.0011 30.4 4.2 34 23-56 250-288 (493)
179 PRK08850 2-octaprenyl-6-methox 35.8 35 0.00076 30.4 3.0 38 18-55 126-169 (405)
180 PRK08955 glyceraldehyde-3-phos 35.6 48 0.001 29.5 3.7 44 14-57 54-103 (334)
181 KOG1335|consensus 35.0 59 0.0013 29.9 4.1 76 40-116 300-377 (506)
182 TIGR01350 lipoamide_DH dihydro 34.4 61 0.0013 29.4 4.4 32 25-56 111-145 (461)
183 PRK15425 gapA glyceraldehyde-3 34.3 48 0.001 29.5 3.5 44 14-57 53-104 (331)
184 PRK07494 2-octaprenyl-6-methox 33.1 40 0.00086 29.7 2.9 32 24-55 133-168 (388)
185 PRK06416 dihydrolipoamide dehy 33.0 59 0.0013 29.6 4.0 38 18-55 106-147 (462)
186 PRK10262 thioredoxin reductase 32.5 67 0.0014 27.6 4.1 30 31-60 93-123 (321)
187 KOG2311|consensus 32.4 32 0.00069 32.5 2.1 22 31-52 163-184 (679)
188 PRK07608 ubiquinone biosynthes 32.1 43 0.00092 29.4 2.9 38 18-55 126-168 (388)
189 PLN02697 lycopene epsilon cycl 32.1 77 0.0017 30.0 4.7 36 19-54 207-248 (529)
190 COG0445 GidA Flavin-dependent 31.1 39 0.00084 32.3 2.5 22 31-52 135-156 (621)
191 TIGR03329 Phn_aa_oxid putative 30.7 80 0.0017 28.8 4.5 33 19-52 198-235 (460)
192 cd01176 IPT_RBP-Jkappa IPT dom 30.5 31 0.00067 24.8 1.4 36 21-56 55-95 (97)
193 PRK05732 2-octaprenyl-6-methox 30.4 53 0.0011 28.9 3.2 38 18-55 127-170 (395)
194 TIGR01901 adhes_NPXG filamento 30.4 86 0.0019 21.7 3.6 35 17-51 40-76 (79)
195 PLN02237 glyceraldehyde-3-phos 30.2 54 0.0012 30.4 3.2 42 14-55 128-178 (442)
196 COG1148 HdrA Heterodisulfide r 30.0 46 0.001 31.5 2.7 24 31-54 286-312 (622)
197 PRK12416 protoporphyrinogen ox 28.7 78 0.0017 28.7 4.1 34 19-52 241-278 (463)
198 TIGR01989 COQ6 Ubiquinone bios 28.3 98 0.0021 28.0 4.6 24 32-55 161-184 (437)
199 PF08476 VD10_N: Viral D10 N-t 26.9 59 0.0013 20.1 2.0 20 31-55 21-40 (45)
200 PRK01747 mnmC bifunctional tRN 26.3 89 0.0019 30.2 4.1 32 24-55 429-464 (662)
201 PRK07818 dihydrolipoamide dehy 26.3 1.1E+02 0.0024 28.0 4.6 27 30-56 119-149 (466)
202 PRK11259 solA N-methyltryptoph 26.0 60 0.0013 28.3 2.7 30 24-54 171-204 (376)
203 PLN02676 polyamine oxidase 25.6 1.2E+02 0.0025 28.3 4.6 36 18-53 246-285 (487)
204 PTZ00023 glyceraldehyde-3-phos 25.5 96 0.0021 27.6 3.9 44 14-57 54-105 (337)
205 PF06594 HCBP_related: Haemoly 25.5 31 0.00066 20.7 0.5 14 31-44 28-41 (43)
206 COG3634 AhpF Alkyl hydroperoxi 25.2 1.9E+02 0.0041 26.5 5.6 59 32-96 303-366 (520)
207 PLN03096 glyceraldehyde-3-phos 25.1 83 0.0018 28.7 3.5 42 15-56 114-164 (395)
208 PF00743 FMO-like: Flavin-bind 24.8 52 0.0011 31.1 2.2 63 33-96 126-195 (531)
209 TIGR01532 E4PD_g-proteo D-eryt 24.6 1.1E+02 0.0023 27.2 4.0 43 15-57 54-104 (325)
210 PRK13535 erythrose 4-phosphate 24.3 1E+02 0.0023 27.4 3.9 41 15-55 56-104 (336)
211 TIGR01534 GAPDH-I glyceraldehy 24.0 98 0.0021 27.4 3.6 44 14-57 52-105 (327)
212 TIGR01377 soxA_mon sarcosine o 23.9 1.3E+02 0.0028 26.2 4.5 29 24-53 167-199 (380)
213 PLN02568 polyamine oxidase 23.9 1.1E+02 0.0024 28.9 4.2 34 19-52 257-294 (539)
214 PRK06834 hypothetical protein; 23.4 1.3E+02 0.0028 27.9 4.5 37 19-55 115-157 (488)
215 TIGR02734 crtI_fam phytoene de 23.1 1.1E+02 0.0024 28.1 4.0 35 22-56 239-278 (502)
216 PRK07729 glyceraldehyde-3-phos 21.7 1.1E+02 0.0025 27.3 3.6 45 14-58 53-105 (343)
217 PLN02358 glyceraldehyde-3-phos 21.5 1.1E+02 0.0023 27.4 3.3 45 14-58 57-111 (338)
218 PF08140 Cuticle_1: Crustacean 21.4 92 0.002 18.8 2.0 19 24-42 21-39 (40)
219 PLN02268 probable polyamine ox 21.3 1.2E+02 0.0027 27.1 3.9 30 23-52 217-250 (435)
220 PRK08401 L-aspartate oxidase; 20.9 81 0.0017 29.0 2.6 19 37-55 158-176 (466)
221 KOG0685|consensus 20.9 1.1E+02 0.0023 28.8 3.3 33 17-49 244-281 (498)
222 COG2509 Uncharacterized FAD-de 20.7 84 0.0018 29.3 2.6 24 32-55 208-231 (486)
223 PRK07364 2-octaprenyl-6-methox 20.7 1.7E+02 0.0038 25.8 4.7 38 18-55 136-182 (415)
224 PLN02487 zeta-carotene desatur 20.6 1.4E+02 0.003 28.6 4.1 37 19-55 312-361 (569)
225 PLN02272 glyceraldehyde-3-phos 20.5 1.2E+02 0.0026 27.9 3.6 44 14-57 137-189 (421)
226 TIGR03143 AhpF_homolog putativ 20.5 2E+02 0.0043 27.1 5.2 40 19-59 75-119 (555)
227 PRK00711 D-amino acid dehydrog 20.3 1.1E+02 0.0023 27.2 3.2 34 19-53 216-256 (416)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=3.9e-43 Score=325.10 Aligned_cols=197 Identities=31% Similarity=0.557 Sum_probs=100.9
Q ss_pred CCcCCCCC-----CCcEEcCCceEEecCcEEEcCCCEE-eccEEEEcCCCCCCCCCCCCCCCeEecCCcccccccccccC
Q psy14914 9 HVKKLRFP-----NNVVKKPDIAELTPTGVRFQDGSYE-QVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINI 82 (216)
Q Consensus 9 ~~~~~~~p-----~~V~~~~~I~~~~~~~V~f~dG~~~-~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~ly~~~~~~ 82 (216)
+.++|+|+ ++|++++.|++|++++|+|.||+++ ++|+|||||||+.+||||++++ +...++.+ .||+++|++
T Consensus 281 ~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~-~~~~~~~~-~LYk~vfp~ 358 (531)
T PF00743_consen 281 PTINDELPNRIRSGRIKVKPDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESL-IKVDDNRV-RLYKHVFPP 358 (531)
T ss_dssp ------------------EE-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTT-T-S-SSSS-SEETTTEET
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-ccccccccc
Confidence 77888888 4688899999999999999999986 7999999999999999999765 44455665 799999998
Q ss_pred C--CCCeEEEccCCCc-chhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCCCCceeeccccHHHHHHHH
Q psy14914 83 E--HPSMCIIGIPGDT-VVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSL 159 (216)
Q Consensus 83 ~--~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~~~LPs~~em~~~~~~~~~~~~~~~~~r~~h~~~~~~~~Y~d~L 159 (216)
+ .|||+|||++++. +.|+++|+||||+|++|+|+.+||+.++|+++++++.+++.+++.....|.+.+++..|+|+|
T Consensus 359 ~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~~~~~~~~~d~~~y~deL 438 (531)
T PF00743_consen 359 NLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGFSPRHTIQVDYIDYMDEL 438 (531)
T ss_dssp ETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5 5999999999875 479999999999999999999999999999999988776655542122344678999999999
Q ss_pred HHHhcCCCCChHHHHHHH-HhHHHhHhccCCCCCCCCeeeCCCCccccCCCCC
Q psy14914 160 ASMMRGESPVPPVLLKIY-FESFARRCEDFTAFRKDKYKIINEKVFVREPGAA 211 (216)
Q Consensus 160 ~~~~~g~~p~~~~~~~~~-~~~~~~~~~~~~~y~~~~Yr~~~~~~~~~~~~~~ 211 (216)
|+++ |+.| .+++++ .++.+++..+++++.+++|||.||++|.++++|.
T Consensus 439 A~~i-G~~P---~~~~l~~~dp~l~~~~~~gp~~p~~YRL~Gpg~w~gar~ai 487 (531)
T PF00743_consen 439 AREI-GCKP---NFWKLFLTDPKLARKLYFGPCTPYQYRLFGPGKWPGAREAI 487 (531)
T ss_dssp S----------------------------------------------------
T ss_pred cccc-cccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence 9999 9998 555554 6899999999999999999999999999999986
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.1e-37 Score=284.70 Aligned_cols=213 Identities=24% Similarity=0.421 Sum_probs=176.3
Q ss_pred CeecccCCCC-cCCCCC---CCcEEcCCceEEec-CcEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCCccccc
Q psy14914 1 VFLSHHSEHV-KKLRFP---NNVVKKPDIAELTP-TGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPL 75 (216)
Q Consensus 1 v~~s~~~~~~-~~~~~p---~~V~~~~~I~~~~~-~~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~l 75 (216)
|++|++..+. ....+| .++.+.+.|+++.+ ++|+|.||+++++|+||+||||++++|||+....+..+++++.+|
T Consensus 230 V~l~~r~~~~~~~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~L 309 (461)
T PLN02172 230 VHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPL 309 (461)
T ss_pred EEEEEeeccccccccCcCCCCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhh
Confidence 5677763322 111233 35677778888765 459999999999999999999999999998643366778888899
Q ss_pred ccccccCCC-CCeEEEccCCCcchhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcC-CCCceeeccccHH
Q psy14914 76 YKHLINIEH-PSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKES-QSTHTHVMHLRSE 153 (216)
Q Consensus 76 y~~~~~~~~-P~L~fiG~~~~~~~~~~~e~Qa~~ia~~~~g~~~LPs~~em~~~~~~~~~~~~~~~-~~r~~h~~~~~~~ 153 (216)
|+|+|++.. |||+|||++..+++|+++|+||+|+|++|+|+.+|||.++|+++++++.+.+...| ..|++|.++..++
T Consensus 310 y~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~~~~~~~~~~g~~~r~~h~~~~~~~ 389 (461)
T PLN02172 310 YKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGKIQS 389 (461)
T ss_pred HHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHhcCCCCceeEEcCccHH
Confidence 999999974 99999999977789999999999999999999999999999999998877766667 7788998877899
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHhHHHhHhccCCCCCCC----CeeeCCCCccccCCCCCCCC
Q psy14914 154 KYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAFRKD----KYKIINEKVFVREPGAAKYP 214 (216)
Q Consensus 154 ~Y~d~L~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~y~~~----~Yr~~~~~~~~~~~~~~~~~ 214 (216)
.|+|+|++.+ |+.|.++|+++||......++.++..||+. +|++.+...|.+..=-..+|
T Consensus 390 ~y~~~la~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (461)
T PLN02172 390 EYLNWIAEEC-GCPLVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEAYEDFARKKLISSHP 453 (461)
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHhCHHhhccccccccceeecccccceEEEeecCh
Confidence 9999999999 999999999999999999999999999988 77777766655443333334
No 3
>KOG1399|consensus
Probab=99.87 E-value=1.9e-22 Score=183.13 Aligned_cols=185 Identities=29% Similarity=0.469 Sum_probs=148.9
Q ss_pred CCcEEcCCceEEecCcEEEcCCCE-EeccEEEEcCCCCCCCCCCCCCCCeEecCCcccccccccccCCC-CCeEEEccCC
Q psy14914 17 NNVVKKPDIAELTPTGVRFQDGSY-EQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEH-PSMCIIGIPG 94 (216)
Q Consensus 17 ~~V~~~~~I~~~~~~~V~f~dG~~-~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~ly~~~~~~~~-P~L~fiG~~~ 94 (216)
.++..++.|+.+++++++|.++.. ..+|.||+||||.+.||||+....+...++.+.+||+++|++.. |.+.|+|++.
T Consensus 231 ~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~ 310 (448)
T KOG1399|consen 231 ENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPL 310 (448)
T ss_pred cceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccchhhCccccccccCe
Confidence 566777779999999966655554 58999999999999999998654334556666799999999864 6888888887
Q ss_pred CcchhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcC--CCCceeeccc-cHHHHHHHHHHHhcCCCCChH
Q psy14914 95 DTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKES--QSTHTHVMHL-RSEKYLNSLASMMRGESPVPP 171 (216)
Q Consensus 95 ~~~~~~~~e~Qa~~ia~~~~g~~~LPs~~em~~~~~~~~~~~~~~~--~~r~~h~~~~-~~~~Y~d~L~~~~~g~~p~~~ 171 (216)
..+.|+++|+||+|++++++|+.+||+.++|.++.......+...+ ..|++|.+.. .+..|...++... |+...++
T Consensus 311 ~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~~~~~~-g~~~~~~ 389 (448)
T KOG1399|consen 311 IQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINWFADLC-GFPKTEP 389 (448)
T ss_pred eeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhhhhhhc-CCCCcch
Confidence 6578999999999999999999999999999999988766555555 4788876543 6778988899888 8866555
Q ss_pred HHHHHHHhHHHhHhccCCCCCCCCeeeCCCCccccCCCCC
Q psy14914 172 VLLKIYFESFARRCEDFTAFRKDKYKIINEKVFVREPGAA 211 (216)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~y~~~~Yr~~~~~~~~~~~~~~ 211 (216)
|+. +..+.++.+.+.|++.+++.|.++..++
T Consensus 390 ~~~---------~~~~~g~~~~y~~~~~~~~~w~g~~~~~ 420 (448)
T KOG1399|consen 390 WLA---------KEGWKGPCGLYAYGLTGPDKWDGAAKLI 420 (448)
T ss_pred HHh---------hhhccCccceeEeecccCcccccHHHHH
Confidence 543 3467889999999999999999875443
No 4
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.74 E-value=0.00017 Score=65.61 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=66.5
Q ss_pred CcEEcC--CceEEecCcEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecC-CcccccccccccCCCCCeEEEccCC
Q psy14914 18 NVVKKP--DIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN-KNVQPLYKHLINIEHPSMCIIGIPG 94 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~-~~v~~ly~~~~~~~~P~L~fiG~~~ 94 (216)
+|+++. .|+++++++|+++||+++++|.||+|+|.... +++.. .++..++ +++ ..=..+-.+++||+|-+|=+.
T Consensus 242 gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~-~~l~~~~~G~I-~Vd~~l~~~~~~~IfAiGD~a 318 (424)
T PTZ00318 242 GVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG-PLTKQ-LKVDKTSRGRI-SVDDHLRVKPIPNVFALGDCA 318 (424)
T ss_pred CCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc-chhhh-cCCcccCCCcE-EeCCCcccCCCCCEEEEeccc
Confidence 477763 59999999999999999999999999999876 55432 3333332 233 111222236789999999654
Q ss_pred Cc------chhhHHHHHHHHHHHHHhCC
Q psy14914 95 DT------VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 95 ~~------~~~~~~e~Qa~~ia~~~~g~ 116 (216)
.. .....+..|++++|.-+.+.
T Consensus 319 ~~~~~~~~~~~~~A~~qg~~~A~ni~~~ 346 (424)
T PTZ00318 319 ANEERPLPTLAQVASQQGVYLAKEFNNE 346 (424)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 32 13467889999998877543
No 5
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.30 E-value=0.00088 Score=61.16 Aligned_cols=96 Identities=18% Similarity=0.296 Sum_probs=66.9
Q ss_pred CcEEc--CCceEEecCcEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCC-cccccccccccCCCCCeEEEccCC
Q psy14914 18 NVVKK--PDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGIPG 94 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~~ly~~~~~~~~P~L~fiG~~~ 94 (216)
+|+++ ..|+++++..|+++||+.+++|.||+|||+++..+++.. .++..+++ ++ ..-.++ -.+.||+|.+|=+.
T Consensus 203 gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~-~gl~~~~~G~i-~Vd~~~-~t~~~~IyA~GD~~ 279 (438)
T PRK13512 203 EIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIES-SNIKLDDKGFI-PVNDKF-ETNVPNIYAIGDII 279 (438)
T ss_pred CCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHh-cCcccCCCCcE-EECCCc-ccCCCCEEEeeeeE
Confidence 47775 358899888899999999999999999999998777753 34444332 22 121121 23689999998664
Q ss_pred Cc-----------chhhHHHHHHHHHHHHHhCC
Q psy14914 95 DT-----------VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 95 ~~-----------~~~~~~e~Qa~~ia~~~~g~ 116 (216)
.. .....+..||+.+|+-+.|.
T Consensus 280 ~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 280 TSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred EeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 21 11245778999999988874
No 6
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.23 E-value=0.0012 Score=58.34 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=61.0
Q ss_pred CcEEcC--CceEEecCcEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecC-CcccccccccccCCCCCeEEEccCC
Q psy14914 18 NVVKKP--DIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN-KNVQPLYKHLINIEHPSMCIIGIPG 94 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~-~~v~~ly~~~~~~~~P~L~fiG~~~ 94 (216)
+|+++. .+.++++++|++.||+++++|.||+|||.++. +++.. .++..++ +++ ..=..+-..++||+|.+|=+.
T Consensus 205 gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~-~gl~~~~~g~i-~vd~~l~~~~~~~Iya~GD~~ 281 (364)
T TIGR03169 205 GIEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAP-PWLAE-SGLPLDEDGFL-RVDPTLQSLSHPHVFAAGDCA 281 (364)
T ss_pred CCEEEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChh-hHHHH-cCCCcCCCCeE-EECCccccCCCCCEEEeeeee
Confidence 577764 58888888899999999999999999999875 45532 2232222 222 111112224689999999654
Q ss_pred Cc----c--hhhHHHHHHHHHHHHHh
Q psy14914 95 DT----V--VFYMFDLQVRFFLQLMK 114 (216)
Q Consensus 95 ~~----~--~~~~~e~Qa~~ia~~~~ 114 (216)
.. . ....+..||+.+|+-+.
T Consensus 282 ~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 282 VITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred ecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 21 1 23457778888776654
No 7
>PRK07846 mycothione reductase; Reviewed
Probab=97.15 E-value=0.0028 Score=58.14 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=66.7
Q ss_pred CcEEc--CCceEEecC--c--EEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCCCeE
Q psy14914 18 NVVKK--PDIAELTPT--G--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~--~--V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P~L~ 88 (216)
+|++. ..|.+++++ + |.+.||+++++|.||+|||.++..+++. ...++..+++. +. .-|.. .+.||+|
T Consensus 220 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~---Ts~p~Iy 296 (451)
T PRK07846 220 RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQR---TSAEGVF 296 (451)
T ss_pred CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcc---cCCCCEE
Confidence 46664 347788643 3 5677899999999999999999988875 33456554332 21 12222 5789999
Q ss_pred EEccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 89 IIGIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 89 fiG~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
.+|=..... .-+.+..|++.++.-+.|.
T Consensus 297 A~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 297 ALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred EEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 999665432 3468899999999888764
No 8
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.11 E-value=0.0014 Score=59.43 Aligned_cols=96 Identities=13% Similarity=0.205 Sum_probs=65.4
Q ss_pred CcEEcC--CceEEecCc--EEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecC-CcccccccccccCCCCCeEEEcc
Q psy14914 18 NVVKKP--DIAELTPTG--VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN-KNVQPLYKHLINIEHPSMCIIGI 92 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~--V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~-~~v~~ly~~~~~~~~P~L~fiG~ 92 (216)
+|++.. .|.++++++ +++.||+++++|.||+|||+++..+++.. .++..++ +++ ..-.+ +-.+.|++|.+|=
T Consensus 193 gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~~~G~i-~vd~~-~~t~~~~Vya~GD 269 (427)
T TIGR03385 193 EINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKD-SGLKLGETGAI-WVNEK-FQTSVPNIYAAGD 269 (427)
T ss_pred CCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHh-cCcccCCCCCE-EECCC-cEeCCCCEEEeee
Confidence 477753 588888655 37889999999999999999988776643 3343332 222 11111 1236899999986
Q ss_pred CCCc-----------chhhHHHHHHHHHHHHHhCC
Q psy14914 93 PGDT-----------VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 93 ~~~~-----------~~~~~~e~Qa~~ia~~~~g~ 116 (216)
.... .....+..|++.+|+-+.|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 270 VAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred eEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 5421 13478899999999999875
No 9
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.08 E-value=0.0019 Score=57.59 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=63.2
Q ss_pred CcEEc--CCceEEecC----cEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCCcccccccccccCCCCCeEEEc
Q psy14914 18 NVVKK--PDIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 91 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~----~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~fiG 91 (216)
+|++. ..|++++++ .|.+.||+++++|.||+|||+.+...++.. .|+..++.-+-.-+. -.+.||+|.+|
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~-~gl~~~~gi~vd~~l---~ts~~~VyA~G 272 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARR-AGLAVNRGIVVDSYL---QTSAPDIYALG 272 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHH-CCCCcCCCEEECCCc---ccCCCCEEEee
Confidence 46665 358888753 378899999999999999999987655432 333322211101122 23579999999
Q ss_pred cCCCc-----chhhHHHHHHHHHHHHHhCC
Q psy14914 92 IPGDT-----VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 92 ~~~~~-----~~~~~~e~Qa~~ia~~~~g~ 116 (216)
=+... ..+..+..|++.+|+-+.|.
T Consensus 273 D~a~~~~~~~~~~~~a~~~g~~~a~n~~g~ 302 (377)
T PRK04965 273 DCAEINGQVLPFLQPIQLSAMALAKNLLGQ 302 (377)
T ss_pred ecEeECCceeehHHHHHHHHHHHHHHhcCC
Confidence 66431 23445679999999999885
No 10
>PRK06116 glutathione reductase; Validated
Probab=96.91 E-value=0.0095 Score=54.43 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=66.6
Q ss_pred CcEEcC--CceEEec--C---cEEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-ccccccccccCCCCCeE
Q psy14914 18 NVVKKP--DIAELTP--T---GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQPLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~---~V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~~ly~~~~~~~~P~L~ 88 (216)
+|++.. .|.++++ + .|.+.||+++++|.||+|||+++...+|. ...++..+++. + ..-.++ -.+.||+|
T Consensus 222 GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~-~Ts~~~Iy 299 (450)
T PRK06116 222 GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYI-IVDEYQ-NTNVPGIY 299 (450)
T ss_pred CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcE-ecCCCC-CcCCCCEE
Confidence 477753 4888863 2 26778999899999999999998877543 23445544332 2 111111 24689999
Q ss_pred EEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 89 IIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 89 fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
.+|=+... .....+..|++.+|..+.|.
T Consensus 300 A~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 300 AVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred EEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 99976533 24578899999999998874
No 11
>PLN02507 glutathione reductase
Probab=96.90 E-value=0.0099 Score=55.35 Aligned_cols=96 Identities=22% Similarity=0.320 Sum_probs=66.6
Q ss_pred CcEEcC--CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCCCeE
Q psy14914 18 NVVKKP--DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P~L~ 88 (216)
+|++.. .|+++++ ++ |.+.+|+++++|.||+|||+++...+|. +..++..+++. +. .-|.. .+.||+|
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~---Ts~p~Iy 334 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR---TNIPSIW 334 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc---CCCCCEE
Confidence 466653 4778863 33 5677888899999999999999887653 23455554332 21 12222 4789999
Q ss_pred EEccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 89 IIGIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 89 fiG~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
-+|=+.... ..+.+..|++.++.-+.|.
T Consensus 335 AiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 335 AIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred EeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 999775432 3578899999999988764
No 12
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.90 E-value=0.0034 Score=56.95 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=65.9
Q ss_pred CcEEc--CCceEEecCcEEEcCCCE-EeccEEEEcCCCCCCCCCCCCCCCeEec-CCcccccccccccCCCCCeEEEccC
Q psy14914 18 NVVKK--PDIAELTPTGVRFQDGSY-EQVDIILYCTGYTYRYPFLHESCGIKVV-NKNVQPLYKHLINIEHPSMCIIGIP 93 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~~V~f~dG~~-~~~D~II~aTGy~~~~pfl~~~~~l~~~-~~~v~~ly~~~~~~~~P~L~fiG~~ 93 (216)
+|++. ..|+++++++|.+++|.. +++|.||||+|-+.+ |++..-.++..+ .+++ -.=..+-.+++||+|.+|=+
T Consensus 223 GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl-~V~~~L~~~~~~~IFa~GD~ 300 (405)
T COG1252 223 GVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRL-VVNPTLQVPGHPDIFAAGDC 300 (405)
T ss_pred CCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCE-EeCCCcccCCCCCeEEEecc
Confidence 46664 569999999999999995 999999999999876 333320122111 1222 11122234789999999855
Q ss_pred CCc-------chhhHHHHHHHHHHHHHhCCC
Q psy14914 94 GDT-------VVFYMFDLQVRFFLQLMKGYV 117 (216)
Q Consensus 94 ~~~-------~~~~~~e~Qa~~ia~~~~g~~ 117 (216)
... ..-+.+..|++++|+.+....
T Consensus 301 A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l 331 (405)
T COG1252 301 AAVIDPRPVPPTAQAAHQQGEYAAKNIKARL 331 (405)
T ss_pred ccCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 422 234788999999998876544
No 13
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.82 E-value=0.0045 Score=52.55 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=59.8
Q ss_pred CcEEcC--CceEEecCc----EEEc---CCC--EEeccEEEEcCCCCCCCCCCCCCCCeEec-CCcccccccccccCCCC
Q psy14914 18 NVVKKP--DIAELTPTG----VRFQ---DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVV-NKNVQPLYKHLINIEHP 85 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~----V~f~---dG~--~~~~D~II~aTGy~~~~pfl~~~~~l~~~-~~~v~~ly~~~~~~~~P 85 (216)
+|++.. .+.++++++ +++. +|+ ++++|.||+|||+++..+++... +..+ ++++ ..-.. +..+.|
T Consensus 191 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~--~~~~~~g~i-~v~~~-~~t~~~ 266 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL--LELDEGGYI-VTDEG-MRTSVP 266 (300)
T ss_pred CeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh--heecCCCcE-EECCC-CccCCC
Confidence 566653 578887643 5554 343 46999999999999887776542 2222 2233 22222 335789
Q ss_pred CeEEEccCCC--cchhhHHHHHHHHHHHHHh
Q psy14914 86 SMCIIGIPGD--TVVFYMFDLQVRFFLQLMK 114 (216)
Q Consensus 86 ~L~fiG~~~~--~~~~~~~e~Qa~~ia~~~~ 114 (216)
|+|.+|=... ......+-.|++.+|..+.
T Consensus 267 ~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 267 GVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred CEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 9999998765 2345677778888776654
No 14
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.81 E-value=0.0047 Score=60.61 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=64.2
Q ss_pred CcEEcC--CceEEecC----cEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCCcccccccccccCCCCCeEEEc
Q psy14914 18 NVVKKP--DIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 91 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~----~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~fiG 91 (216)
+|++.. .+.++.++ +|+|+||+++++|.||+|||+++..+++. ..++..++.-+-.-+.+ .+.||+|.+|
T Consensus 196 GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~-~~gl~~~ggI~Vd~~~~---Ts~p~IyA~G 271 (785)
T TIGR02374 196 GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAV-SAGIKVNRGIIVNDSMQ---TSDPDIYAVG 271 (785)
T ss_pred CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHH-hcCCccCCCEEECCCcc---cCCCCEEEee
Confidence 466653 47777643 48899999999999999999998876543 23343332211122222 3689999999
Q ss_pred cCCCc-----chhhHHHHHHHHHHHHHhCCC
Q psy14914 92 IPGDT-----VVFYMFDLQVRFFLQLMKGYV 117 (216)
Q Consensus 92 ~~~~~-----~~~~~~e~Qa~~ia~~~~g~~ 117 (216)
=.... +.+..+..||+.+|.-+.|..
T Consensus 272 D~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 272 ECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred ecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 66431 223456789999999998854
No 15
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.81 E-value=0.012 Score=53.98 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=65.2
Q ss_pred CcEEcC--CceEEecC-----cEEEcCC-CEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCCC
Q psy14914 18 NVVKKP--DIAELTPT-----GVRFQDG-SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHPS 86 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~-----~V~f~dG-~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P~ 86 (216)
+|+++. .|++++++ .|++++| +.+++|.||+|||+++....|. ...++..+++. +. .-|. -.+.||
T Consensus 221 gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~---~T~~p~ 297 (450)
T TIGR01421 221 GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQ---NTNVPG 297 (450)
T ss_pred CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCC---cCCCCC
Confidence 477764 47788642 3677888 4579999999999999877653 33455554332 20 1122 246899
Q ss_pred eEEEccCCCc-chhhHHHHHHHHHHHHHhC
Q psy14914 87 MCIIGIPGDT-VVFYMFDLQVRFFLQLMKG 115 (216)
Q Consensus 87 L~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g 115 (216)
+|-+|=+... ...+.+..|++.+|.-+.|
T Consensus 298 IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 298 IYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred EEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 9999975443 3457889999999998875
No 16
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.68 E-value=0.013 Score=53.74 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=66.4
Q ss_pred CcEEc--CCceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCCCCCCCC-CCCeEecCCc-ccccccccccCCCCCeEE
Q psy14914 18 NVVKK--PDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLHE-SCGIKVVNKN-VQPLYKHLINIEHPSMCI 89 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~~pfl~~-~~~l~~~~~~-v~~ly~~~~~~~~P~L~f 89 (216)
+|++. ..|.++++ ++ |.+.+|+++++|.||+|||..+...++.. ..|+..+++. + ..=.++ -.+.|++|.
T Consensus 223 gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i-~vd~~~-~Ts~~~IyA 300 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRI-KVDEYG-RTSARGVWA 300 (452)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcE-eeCCCc-ccCCCCEEE
Confidence 46665 34778763 33 55678888999999999999998877642 3456554332 2 111111 257899999
Q ss_pred EccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 90 IGIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 90 iG~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
+|=..... ..+.+..|++.+|..+.|.
T Consensus 301 ~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 301 LGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred eecccCcccChhHHHHHHHHHHHHhcCC
Confidence 99775442 3468899999999888764
No 17
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0061 Score=56.00 Aligned_cols=101 Identities=20% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCcEEcCC-ceEEecCcEEEcCCCEEeccEEEEcCCCCC-CCCCCCCCCCeEecCCcccccccccccCCCCCeEEEccCC
Q psy14914 17 NNVVKKPD-IAELTPTGVRFQDGSYEQVDIILYCTGYTY-RYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPG 94 (216)
Q Consensus 17 ~~V~~~~~-I~~~~~~~V~f~dG~~~~~D~II~aTGy~~-~~pfl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~fiG~~~ 94 (216)
.++.+++. |+.++..++...+|+.++.|+|+.+|||+. .+..+....+...-+....-.|+++...+.||+++++.+.
T Consensus 308 ~~~~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~ 387 (443)
T COG2072 308 GDVEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPT 387 (443)
T ss_pred cccceeeccccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCcc
Confidence 35677764 777778888887777789999999999987 5544433221111122333568888888999999998887
Q ss_pred Ccc----hhhHHHHHHHHHHHHHhCCC
Q psy14914 95 DTV----VFYMFDLQVRFFLQLMKGYV 117 (216)
Q Consensus 95 ~~~----~~~~~e~Qa~~ia~~~~g~~ 117 (216)
... .-...|.+.++++..+.-..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (443)
T COG2072 388 KASGGLKAALRAELRITLLADAIAHGR 414 (443)
T ss_pred CCcccchhHHhhhhhhhHHHHHHHhcc
Confidence 642 23567777888877776543
No 18
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.53 E-value=0.03 Score=51.26 Aligned_cols=96 Identities=20% Similarity=0.334 Sum_probs=65.5
Q ss_pred CcEEcC--CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCCCeE
Q psy14914 18 NVVKKP--DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P~L~ 88 (216)
+|++.. .|.++++ ++ |.+.||+++++|.||+|||+.+....|. ...++..+++. +. .-|.+ .+.||+|
T Consensus 221 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~---Ts~~~Iy 297 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSR---TSIPSIY 297 (446)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCc---cCCCCEE
Confidence 477764 4778763 33 6677898899999999999998866542 23455544332 21 11222 3689999
Q ss_pred EEccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 89 IIGIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 89 fiG~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
.+|=+.... ..+.+..|++.++..+.|.
T Consensus 298 A~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 298 AVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred EeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 999776432 3468899999999888763
No 19
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.50 E-value=0.027 Score=51.77 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=64.0
Q ss_pred CcEEcC--CceEEecCc----EEEc--CCC--EEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCC
Q psy14914 18 NVVKKP--DIAELTPTG----VRFQ--DGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEH 84 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~----V~f~--dG~--~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~ 84 (216)
+|++.. .|+++++++ +++. ||+ ++++|.||+|||+.+....+. ...++..++.. +. .-|.. .+.
T Consensus 227 gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~---Ts~ 303 (466)
T PRK07818 227 GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMR---TNV 303 (466)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcc---cCC
Confidence 577763 488887532 4554 775 579999999999998876542 23445443322 21 12222 368
Q ss_pred CCeEEEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 85 PSMCIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 85 P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|++|.+|=.... .....+..|++.+|..+.|.
T Consensus 304 p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 304 PHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred CCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 999999965432 34578899999999998874
No 20
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.25 E-value=0.045 Score=50.38 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=65.2
Q ss_pred CcEEcC--CceEEe--cCc--EEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCC-cccccccccccCCCCCeEE
Q psy14914 18 NVVKKP--DIAELT--PTG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNK-NVQPLYKHLINIEHPSMCI 89 (216)
Q Consensus 18 ~V~~~~--~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~-~v~~ly~~~~~~~~P~L~f 89 (216)
+|++.. .|.+++ +++ |.+.||+++++|.||+|||+.+....+. ...++.+++. .+ ..-.++ -.+.||+|.
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i-~Vd~~~-~Ts~~~IyA 309 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHI-TVDRVS-RTSVPGIYA 309 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcE-eECCCc-ccCCCCEEE
Confidence 477753 477885 333 5667899899999999999998876542 2345554432 22 111111 237899999
Q ss_pred EccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 90 IGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 90 iG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
+|=.... .....+..|++.++..+.|.
T Consensus 310 ~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 310 AGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred EeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 9976543 23578899999999887764
No 21
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.23 E-value=0.015 Score=52.18 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=63.1
Q ss_pred CcEEc--CCceEEecC---cEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCCccc-ccccccccCCCCCeEEEc
Q psy14914 18 NVVKK--PDIAELTPT---GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ-PLYKHLINIEHPSMCIIG 91 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~---~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~-~ly~~~~~~~~P~L~fiG 91 (216)
+|+++ ..|++++++ .|.+.||+++++|.||+|+|..+...++. ..++..+ +.+. .-|. -.+.||+|-+|
T Consensus 200 GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~-~~gl~~~-~gi~vd~~~---~ts~~~IyA~G 274 (396)
T PRK09754 200 GVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAR-EANLDTA-NGIVIDEAC---RTCDPAIFAGG 274 (396)
T ss_pred CCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHH-hcCCCcC-CCEEECCCC---ccCCCCEEEcc
Confidence 46665 357888743 26788999999999999999998755543 2334322 2220 1122 23578998888
Q ss_pred cCCC-----c-----chhhHHHHHHHHHHHHHhCCC
Q psy14914 92 IPGD-----T-----VVFYMFDLQVRFFLQLMKGYV 117 (216)
Q Consensus 92 ~~~~-----~-----~~~~~~e~Qa~~ia~~~~g~~ 117 (216)
=+.. . ..++.+..|++.+|+-+.|..
T Consensus 275 D~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 275 DVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred ceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 5431 1 246889999999999998853
No 22
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.23 E-value=0.046 Score=50.84 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=65.9
Q ss_pred CcEEcC--CceEEec--C---cEEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCCCe
Q psy14914 18 NVVKKP--DIAELTP--T---GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHPSM 87 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~---~V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P~L 87 (216)
+|++.. .+++++. + .|.+.||+++++|.||+|||..+...++. +..++..+++. +. .-|.+ .+.||+
T Consensus 245 GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~---Ts~~~I 321 (486)
T TIGR01423 245 GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR---TNVPNI 321 (486)
T ss_pred CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCc---CCCCCE
Confidence 466653 4778863 2 36778898899999999999998877654 23445544332 21 12222 368999
Q ss_pred EEEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 88 CIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 88 ~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|-+|=+... ...+.+..|++.++.-+.|.
T Consensus 322 yA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 322 YAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred EEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 999977543 24578899999999888763
No 23
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.21 E-value=0.032 Score=51.09 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=64.4
Q ss_pred CcEEcC--CceEEecC--c--EEEcCC---CEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCcccccccccccCCCCCe
Q psy14914 18 NVVKKP--DIAELTPT--G--VRFQDG---SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSM 87 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~--~--V~f~dG---~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v~~ly~~~~~~~~P~L 87 (216)
+|++.. .|.+++++ + +.+.+| +++++|.||+|||..+...++. +..++..+++++ ..-.++ -...|++
T Consensus 227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i-~vd~~~-~t~~~~V 304 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFI-EVDEQL-RTNVPNI 304 (462)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEE-eECCCC-ccCCCCE
Confidence 467653 48888753 3 445566 6689999999999998877663 234454443222 111111 2568999
Q ss_pred EEEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 88 CIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 88 ~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|-+|=+... .....+..|++.+|.-+.|.
T Consensus 305 yAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 305 YAIGDIVGGPMLAHKASAEGIIAAEAIAGN 334 (462)
T ss_pred EEeeecCCCcchHHHHHHHHHHHHHHHcCC
Confidence 999966532 24578899999999988875
No 24
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.12 E-value=0.059 Score=50.20 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=64.8
Q ss_pred CcEEcC--CceEEec--C--cEEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCcccccccccccCCCCCeEEE
Q psy14914 18 NVVKKP--DIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCII 90 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v~~ly~~~~~~~~P~L~fi 90 (216)
+|++.. .+.++++ + .|++.||+++++|.||+|+|+.+...+|. ...++..+++..-..-.. -.+.|++|-+
T Consensus 236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAi 313 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAV 313 (499)
T ss_pred CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEE
Confidence 466653 3556653 2 36788999899999999999999887774 345555543321000011 3568999999
Q ss_pred ccCCC--cchhhHHHHHHHHHHHHHhCC
Q psy14914 91 GIPGD--TVVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 91 G~~~~--~~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|=... ....+.+..|++.+|.-+.|.
T Consensus 314 GDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 314 GDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred EEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 97543 224578899999999888763
No 25
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.07 E-value=0.053 Score=49.61 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=64.1
Q ss_pred CcEEcC--CceEEe--cCc--EEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-ccccccccccCCCCCeEE
Q psy14914 18 NVVKKP--DIAELT--PTG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQPLYKHLINIEHPSMCI 89 (216)
Q Consensus 18 ~V~~~~--~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~~ly~~~~~~~~P~L~f 89 (216)
+|++.. .|.+++ +++ +++.+|+++++|.||+|||.++....+. ...++..++.. + .-...+-...||+|-
T Consensus 230 gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i--~vd~~~~t~~~~IyA 307 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQL--KVNENYQTAVPHIYA 307 (461)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcE--eeCCCcccCCCCEEE
Confidence 466653 477776 333 4567898899999999999998876542 23445443322 2 111111235799999
Q ss_pred EccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 90 IGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 90 iG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
+|=.... .....+..|++.+|..+.|.
T Consensus 308 iGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 308 VGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred eeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9976532 23467899999999988875
No 26
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.88 E-value=0.029 Score=50.95 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=61.4
Q ss_pred CcEEc--CCceEEecCc---EEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecC-Cccc-ccccccccCCCCCeEEE
Q psy14914 18 NVVKK--PDIAELTPTG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN-KNVQ-PLYKHLINIEHPSMCII 90 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~~---V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~-~~v~-~ly~~~~~~~~P~L~fi 90 (216)
+|++. ..|.++++++ .+..+|.++++|.||+|||+.+..+++.. .|+..++ +++. .-+.+ ...||+|-+
T Consensus 205 gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~-~gl~~~~~g~i~vd~~~~---t~~~~IyA~ 280 (444)
T PRK09564 205 GVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLED-TGLKTLKNGAIIVDEYGE---TSIENIYAA 280 (444)
T ss_pred CCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHh-cCccccCCCCEEECCCcc---cCCCCEEEe
Confidence 36665 3588887543 23345667899999999999987777653 3343322 2221 11222 358999999
Q ss_pred ccCCCc-----------chhhHHHHHHHHHHHHHhCC
Q psy14914 91 GIPGDT-----------VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 91 G~~~~~-----------~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|=+... .....+..|++.+|.-+.|.
T Consensus 281 GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~ 317 (444)
T PRK09564 281 GDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGR 317 (444)
T ss_pred eeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCC
Confidence 855421 13468899999999988874
No 27
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.83 E-value=0.048 Score=54.09 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=64.1
Q ss_pred CcEEcC--CceEEecC------cEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCC-ccc-ccccccccCCCCCe
Q psy14914 18 NVVKKP--DIAELTPT------GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQ-PLYKHLINIEHPSM 87 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~------~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~-~ly~~~~~~~~P~L 87 (216)
+|+++. .++++.++ +|.|.||+++++|.||+|||.++...++. ..|+..++. .+. .-+.. ...||+
T Consensus 201 GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~-~~Gl~~~~~G~I~VD~~l~---Ts~p~I 276 (847)
T PRK14989 201 GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLAT-QCGLAVAPRGGIVINDSCQ---TSDPDI 276 (847)
T ss_pred CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHh-hcCccCCCCCcEEECCCCc---CCCCCE
Confidence 466653 47788532 47899999999999999999998866543 234433322 220 11222 358999
Q ss_pred EEEccCCCc-----chhhHHHHHHHHHHHHHhCCC
Q psy14914 88 CIIGIPGDT-----VVFYMFDLQVRFFLQLMKGYV 117 (216)
Q Consensus 88 ~fiG~~~~~-----~~~~~~e~Qa~~ia~~~~g~~ 117 (216)
|-+|=+... +....+..||+.+|..+.|..
T Consensus 277 YAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 277 YAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred EEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 999965432 234567789999999998853
No 28
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.48 E-value=0.12 Score=47.47 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=43.2
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCCCeEecCC-cccccccccccCCCCCeEEEccCCCc-chhhHHHHHHHHHHHHH
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLM 113 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~~ly~~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~~ 113 (216)
++++|.||+|+|+.+...++....++..++. .+ ..=......+.|++|.+|=.... .....+..|++.+|..+
T Consensus 373 ~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i-~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I 447 (457)
T PRK11749 373 TLPADLVIKAIGQTPNPLILSTTPGLELNRWGTI-IADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAI 447 (457)
T ss_pred EEECCEEEECccCCCCchhhccccCccCCCCCCE-EeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHH
Confidence 5799999999999988555443233333222 22 11111123467999999976543 23455667777766544
No 29
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.45 E-value=0.12 Score=47.63 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=63.4
Q ss_pred CcEEcC--CceEEecC--c--EEEcCC----CEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCcccccccccccCCCCC
Q psy14914 18 NVVKKP--DIAELTPT--G--VRFQDG----SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPS 86 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~--~--V~f~dG----~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v~~ly~~~~~~~~P~ 86 (216)
+|++.. .|.+++++ + |.+.|| +++++|.||+|||+.+..++|. +..++..+++..-..-.++ -...|+
T Consensus 238 gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~Ts~~~ 316 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC-RTNVPN 316 (475)
T ss_pred CcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC-ccCCCC
Confidence 477753 58888743 3 455553 3579999999999999877653 2344544433211111111 236899
Q ss_pred eEEEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 87 MCIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 87 L~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
+|.+|=.... .....+..|++.+|.-+.|.
T Consensus 317 VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 317 VYAIGDVVRGPMLAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred EEEEEeccCCcchHHHHHHHHHHHHHHHcCC
Confidence 9999966432 24577889999999988874
No 30
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=95.43 E-value=0.14 Score=47.55 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=62.6
Q ss_pred CcEEcC--CceEEec--C--cEEEcCCC---EEeccEEEEcCCCCCCCCCCC-CCCCeEecC--CcccccccccccCCCC
Q psy14914 18 NVVKKP--DIAELTP--T--GVRFQDGS---YEQVDIILYCTGYTYRYPFLH-ESCGIKVVN--KNVQPLYKHLINIEHP 85 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~--~V~f~dG~---~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~--~~v~~ly~~~~~~~~P 85 (216)
+|+++. .+.++++ + .|++.||+ ++++|.||+|||..+...+|. +..++.+++ ..+ .....+-.+.|
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I--~Vd~~~~Ts~p 311 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKI--PADEEEQTNVP 311 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeE--ecCCCcccCCC
Confidence 466653 3556653 2 26677774 679999999999999877754 334555443 222 11111224689
Q ss_pred CeEEEccCCC--cchhhHHHHHHHHHHHHHhC
Q psy14914 86 SMCIIGIPGD--TVVFYMFDLQVRFFLQLMKG 115 (216)
Q Consensus 86 ~L~fiG~~~~--~~~~~~~e~Qa~~ia~~~~g 115 (216)
++|-+|=+.. ....+.+..|++.+|+-+.|
T Consensus 312 ~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 312 YIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 9999997543 22357889999999998876
No 31
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.43 E-value=0.12 Score=47.16 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=61.7
Q ss_pred CcEEcC--CceEEec--CcE--EEcCC--CEEeccEEEEcCCCCCCCCCC-CCCCCeEecCCc-ccccccccccCCCCCe
Q psy14914 18 NVVKKP--DIAELTP--TGV--RFQDG--SYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKN-VQPLYKHLINIEHPSM 87 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~V--~f~dG--~~~~~D~II~aTGy~~~~pfl-~~~~~l~~~~~~-v~~ly~~~~~~~~P~L 87 (216)
+|++.. .|.+++. +++ .+.+| +++++|.||+|||..+..+.+ -...++..++.. + ..=.. +-...|++
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i-~vd~~-l~t~~~~I 302 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRI-VVDEY-MRTNVPGI 302 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcE-eeCCC-cccCCCCE
Confidence 466653 4777763 444 44567 467999999999999887632 122344443322 2 11111 12357999
Q ss_pred EEEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 88 CIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 88 ~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|.+|=.... .....+..|++.+|..+.++
T Consensus 303 yaiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 303 YAIGDVIGGPMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred EEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999977543 23577889999999988765
No 32
>PRK06370 mercuric reductase; Validated
Probab=95.40 E-value=0.17 Score=46.37 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=61.8
Q ss_pred CcEEcC--CceEEecC--c--EEEc--C-CCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-ccccccccccCCCCC
Q psy14914 18 NVVKKP--DIAELTPT--G--VRFQ--D-GSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQPLYKHLINIEHPS 86 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~--~--V~f~--d-G~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~~ly~~~~~~~~P~ 86 (216)
+|++.. .+.+++++ + |.+. + ++++++|.||+|||.++....|. +..++..+++. + ..-.+ +-.+.||
T Consensus 226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i-~vd~~-l~t~~~~ 303 (463)
T PRK06370 226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYI-KVDDQ-LRTTNPG 303 (463)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcE-eECcC-CcCCCCC
Confidence 477753 48888743 3 3342 3 34679999999999998876442 23445444332 2 11111 1236899
Q ss_pred eEEEccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 87 MCIIGIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 87 L~fiG~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
+|-+|=..... .-..+..|++.+|.-+.|.
T Consensus 304 IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 304 IYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 99999765432 3467889999999888764
No 33
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.13 E-value=0.23 Score=45.21 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=60.7
Q ss_pred CcEEcC--CceEEecC--cE-EEcCCCEEeccEEEEcCCCCCCCCCCCC-CCCeEecCCc-ccccccccccCCCCCeEEE
Q psy14914 18 NVVKKP--DIAELTPT--GV-RFQDGSYEQVDIILYCTGYTYRYPFLHE-SCGIKVVNKN-VQPLYKHLINIEHPSMCII 90 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~--~V-~f~dG~~~~~D~II~aTGy~~~~pfl~~-~~~l~~~~~~-v~~ly~~~~~~~~P~L~fi 90 (216)
+|++.. .+.+++++ ++ +..+|+++++|.||+|||..+..+.+.. ..++..+++. + ..-.+ +-...||+|.+
T Consensus 212 GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i-~vd~~-~~t~~~~Iyai 289 (438)
T PRK07251 212 GITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAI-KVDDY-CQTSVPGVFAV 289 (438)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcE-EECCC-cccCCCCEEEe
Confidence 466653 47777643 34 3456778899999999999988765532 1234333322 2 11111 22368999999
Q ss_pred ccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 91 GIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 91 G~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
|=+.... ..+.+..|++.++..+.|.
T Consensus 290 GD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 290 GDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred eecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9775432 3466677888888777653
No 34
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.11 E-value=0.14 Score=47.26 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=61.1
Q ss_pred cEEcC--CceEEe--cCc--EEEcCC----CEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCC
Q psy14914 19 VVKKP--DIAELT--PTG--VRFQDG----SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHP 85 (216)
Q Consensus 19 V~~~~--~I~~~~--~~~--V~f~dG----~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P 85 (216)
|.+.. .|++++ +++ +.+.++ +++++|.||+|||+++...++. ...++.+++.. +. .-|.. .+.|
T Consensus 229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~---t~~p 305 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCR---TNVP 305 (471)
T ss_pred eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcc---cCCC
Confidence 55543 477776 333 445553 2579999999999999877653 23455544332 20 11222 3689
Q ss_pred CeEEEccCCC-cchhhHHHHHHHHHHHHHhCC
Q psy14914 86 SMCIIGIPGD-TVVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 86 ~L~fiG~~~~-~~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|+|-+|=+.. ......+..|++.+|..+.|.
T Consensus 306 ~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 306 HIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred CEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 9999996532 224578899999999988774
No 35
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.07 E-value=0.19 Score=46.34 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=62.2
Q ss_pred CcEEcC--CceEEec--CcE--EEc---CC--CEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCcc-cccccccccCCC
Q psy14914 18 NVVKKP--DIAELTP--TGV--RFQ---DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNV-QPLYKHLINIEH 84 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~V--~f~---dG--~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v-~~ly~~~~~~~~ 84 (216)
+|+++. .++++++ +++ .+. +| +++++|.||+|||+.+....|. +..++..++..+ ..-+. -.+.
T Consensus 229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~---~Ts~ 305 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHH---RTSV 305 (466)
T ss_pred CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCe---ecCC
Confidence 467753 4788874 344 332 33 4579999999999998766553 223444433222 11121 2468
Q ss_pred CCeEEEccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 85 PSMCIIGIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 85 P~L~fiG~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
|++|-+|=+.... .-+.+..|++.+|.-+.|.
T Consensus 306 ~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 306 PGVWVIGDVTSGPMLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred CCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9999999776432 3478899999999988775
No 36
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.90 E-value=0.18 Score=46.17 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=62.2
Q ss_pred cEEcC--CceEEecC---cEEE--cCCC--EEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCCC
Q psy14914 19 VVKKP--DIAELTPT---GVRF--QDGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHPS 86 (216)
Q Consensus 19 V~~~~--~I~~~~~~---~V~f--~dG~--~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P~ 86 (216)
|++.. .|.+++++ +|.+ .+|+ ++++|.||+|||..+..++|. +..++..+++. +. .-|.. .+.||
T Consensus 224 I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~---ts~~~ 300 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQ---TSVPG 300 (460)
T ss_pred cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcc---cCCCC
Confidence 66653 47788643 3553 4554 579999999999999887543 23455444332 20 11222 26899
Q ss_pred eEEEccCCCcc-hhhHHHHHHHHHHHHHhC
Q psy14914 87 MCIIGIPGDTV-VFYMFDLQVRFFLQLMKG 115 (216)
Q Consensus 87 L~fiG~~~~~~-~~~~~e~Qa~~ia~~~~g 115 (216)
+|.+|=+.... ....+..|++.+|..+.|
T Consensus 301 IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 301 IYAAGDVNGKPPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred EEEEEecCCCccchhHHHHHHHHHHHHhcC
Confidence 99999775432 347889999999998877
No 37
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.85 E-value=0.2 Score=48.39 Aligned_cols=77 Identities=16% Similarity=0.042 Sum_probs=51.5
Q ss_pred EEeccEEEEcCCCCCCCCCCC-CCCCeEecCCccc-cccccccc---CCCCCeEEEccCCCcc-hhhHHHHHHHHHHHHH
Q psy14914 40 YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQ-PLYKHLIN---IEHPSMCIIGIPGDTV-VFYMFDLQVRFFLQLM 113 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v~-~ly~~~~~---~~~P~L~fiG~~~~~~-~~~~~e~Qa~~ia~~~ 113 (216)
++++|.||+|||.++....|. +..++..+++.+. .-|.++.. ...|++|-+|=+.... ..+.+..|++.++..+
T Consensus 413 ~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni 492 (659)
T PTZ00153 413 ETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWI 492 (659)
T ss_pred EEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHH
Confidence 579999999999999877764 2334433332221 22333321 1268999999765432 3478999999999999
Q ss_pred hCC
Q psy14914 114 KGY 116 (216)
Q Consensus 114 ~g~ 116 (216)
.|.
T Consensus 493 ~g~ 495 (659)
T PTZ00153 493 EGK 495 (659)
T ss_pred cCC
Confidence 885
No 38
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.80 E-value=0.15 Score=46.32 Aligned_cols=102 Identities=16% Similarity=0.227 Sum_probs=56.4
Q ss_pred CcEEcC--CceEEecCc---EEEc-----CC--CEEeccEEEEcCCCCCCCC-CCCCC-CCeEecCC-c--ccccccccc
Q psy14914 18 NVVKKP--DIAELTPTG---VRFQ-----DG--SYEQVDIILYCTGYTYRYP-FLHES-CGIKVVNK-N--VQPLYKHLI 80 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~---V~f~-----dG--~~~~~D~II~aTGy~~~~p-fl~~~-~~l~~~~~-~--v~~ly~~~~ 80 (216)
+|.+.+ ++++++..| +.+. +| +++++|+||+||||+...| ||+.- ..+.+++. + +.+=|+-..
T Consensus 292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~ 371 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLW 371 (436)
T ss_pred CeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeec
Confidence 566654 477777533 5442 23 3468999999999998887 77631 11222222 1 222232222
Q ss_pred cCCCC-CeEEEccCCC---cc--hhhHHHHHHHHHHHHHhCCCCC
Q psy14914 81 NIEHP-SMCIIGIPGD---TV--VFYMFDLQVRFFLQLMKGYVTL 119 (216)
Q Consensus 81 ~~~~P-~L~fiG~~~~---~~--~~~~~e~Qa~~ia~~~~g~~~L 119 (216)
-..-+ .+|.-|.... ++ .+.+.-.-|..|+.-+.|+.+-
T Consensus 372 ~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~ 416 (436)
T COG3486 372 DGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKY 416 (436)
T ss_pred CCCCcceEEEecccccccccCCccchHHHHHHHHHHHHHhCcCCC
Confidence 12233 3444454432 12 3566677777888888887643
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.77 E-value=0.25 Score=45.33 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=62.8
Q ss_pred CcEEcC--CceEEecC--cEEEc-CCC--EEeccEEEEcCCCCCCCCCCC-CCCCeEecCCccc-ccccccccCCCCCeE
Q psy14914 18 NVVKKP--DIAELTPT--GVRFQ-DGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQ-PLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~--~V~f~-dG~--~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v~-~ly~~~~~~~~P~L~ 88 (216)
+|++.. .|.+++++ .+.+. +|+ ++++|.||+|||..+...++. +..++...++.+. .-|.+ ...||+|
T Consensus 225 GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~---ts~~~Vy 301 (458)
T PRK06912 225 GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQ---TNVPHIY 301 (458)
T ss_pred CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCee---cCCCCEE
Confidence 477753 47888753 35554 453 479999999999998877653 2234444333321 12222 3579999
Q ss_pred EEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 89 IIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 89 fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
-+|=.... .....+..|++.+|..+.|.
T Consensus 302 A~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 302 ACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred EEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 99976542 23467889999999988874
No 40
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.60 E-value=0.3 Score=44.94 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=61.6
Q ss_pred CcEEcC--CceEEe---cCcE---EEcCCC--EEeccEEEEcCCCCCCCCCCCC-CCCeEecCCcccccccccccCCCCC
Q psy14914 18 NVVKKP--DIAELT---PTGV---RFQDGS--YEQVDIILYCTGYTYRYPFLHE-SCGIKVVNKNVQPLYKHLINIEHPS 86 (216)
Q Consensus 18 ~V~~~~--~I~~~~---~~~V---~f~dG~--~~~~D~II~aTGy~~~~pfl~~-~~~l~~~~~~v~~ly~~~~~~~~P~ 86 (216)
+|++.. .|.+++ ++++ .+.||+ ++++|.||+|||.++..+.+.. ..++..++..+ ..-.+ +....||
T Consensus 235 gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i-~Vd~~-l~ts~~~ 312 (472)
T PRK05976 235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFI-QIDDF-CQTKERH 312 (472)
T ss_pred CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEE-EECCC-cccCCCC
Confidence 477653 477776 3443 345775 4799999999999988776532 23333222222 11111 1235799
Q ss_pred eEEEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 87 MCIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 87 L~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
++.+|=.... .....+..|++.++..+.|.
T Consensus 313 IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 313 IYAIGDVIGEPQLAHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9999977533 23577889999999888775
No 41
>PRK13748 putative mercuric reductase; Provisional
Probab=94.56 E-value=0.38 Score=45.16 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=61.6
Q ss_pred CcEEcC--CceEEec--CcE--EEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCCCeE
Q psy14914 18 NVVKKP--DIAELTP--TGV--RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~V--~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P~L~ 88 (216)
+|++.. .+++++. +++ .+.+| ++++|.||+|||+.+...+|. +..++..+++. +. .-|.. .+.||+|
T Consensus 324 gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~---Ts~~~Iy 399 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMR---TSVPHIY 399 (561)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcc---cCCCCEE
Confidence 466653 4777763 333 33344 689999999999999877653 23455544322 21 22322 3689999
Q ss_pred EEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 89 IIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 89 fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
.+|=+... ...+.+..|++.++.-+.|.
T Consensus 400 A~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 400 AAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred EeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 99977543 34567888999999888764
No 42
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.55 E-value=0.36 Score=44.23 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=61.8
Q ss_pred CcEEcC--CceEEecC--c--EEEcC---CCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCc-cc-ccccccccCCCC
Q psy14914 18 NVVKKP--DIAELTPT--G--VRFQD---GSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQ-PLYKHLINIEHP 85 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~--~--V~f~d---G~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~-v~-~ly~~~~~~~~P 85 (216)
+|++.. .|++++++ . +.+.+ ++++++|.||+|||.++....|. ...++..+++. +. .-+. -...|
T Consensus 221 gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~---~Ts~~ 297 (463)
T TIGR02053 221 GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETL---RTSNP 297 (463)
T ss_pred CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCc---cCCCC
Confidence 477653 47888643 2 44432 34679999999999998876432 23444443322 21 1122 23689
Q ss_pred CeEEEccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 86 SMCIIGIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 86 ~L~fiG~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
++|-+|=..... ....+..|++.+|.-+.|.
T Consensus 298 ~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 298 GIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 999999765432 3578899999999988774
No 43
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.50 E-value=0.25 Score=45.60 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=43.2
Q ss_pred EEeccEEEEcCCCCCCCC-CCCCCCCeEecCCcccccccccccCCCCCeEEEccCCCcc-hhhHHHHHHHHHHH----HH
Q psy14914 40 YEQVDIILYCTGYTYRYP-FLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDTV-VFYMFDLQVRFFLQ----LM 113 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~p-fl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~fiG~~~~~~-~~~~~e~Qa~~ia~----~~ 113 (216)
++++|.||+|+|+.+... ++. ..++..++......-...+-.+.|++|.+|=..... ....+-.|++.+|. ++
T Consensus 386 ~i~~D~VI~A~G~~p~~~~l~~-~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L 464 (471)
T PRK12810 386 VLPADLVLLAMGFTGPEAGLLA-QFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYL 464 (471)
T ss_pred EEECCEEEECcCcCCCchhhcc-ccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 479999999999998643 443 344443322210111011235689999999665432 22344555555444 44
Q ss_pred hCCCCC
Q psy14914 114 KGYVTL 119 (216)
Q Consensus 114 ~g~~~L 119 (216)
.|+..+
T Consensus 465 ~g~~~~ 470 (471)
T PRK12810 465 MGSTAL 470 (471)
T ss_pred hcCCCC
Confidence 554433
No 44
>PTZ00058 glutathione reductase; Provisional
Probab=94.36 E-value=0.44 Score=45.23 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=60.5
Q ss_pred CcEEcC--CceEEecC---c--EEEcCCC-EEeccEEEEcCCCCCCCCCCCCC-CCeEecCCccc-ccccccccCCCCCe
Q psy14914 18 NVVKKP--DIAELTPT---G--VRFQDGS-YEQVDIILYCTGYTYRYPFLHES-CGIKVVNKNVQ-PLYKHLINIEHPSM 87 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~---~--V~f~dG~-~~~~D~II~aTGy~~~~pfl~~~-~~l~~~~~~v~-~ly~~~~~~~~P~L 87 (216)
+|++.. .+.+++++ + +.+.+|. ++++|.||+|||+.+...+|..+ .++..+++.+. .-|. -.+.|++
T Consensus 292 GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~l---qTs~p~I 368 (561)
T PTZ00058 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQ---RTSVKHI 368 (561)
T ss_pred CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcCC---ccCCCCE
Confidence 466653 47788742 2 3444554 68999999999999887776432 22222222221 1222 2467899
Q ss_pred EEEccCCC----------------------------------cc-hhhHHHHHHHHHHHHHhCC
Q psy14914 88 CIIGIPGD----------------------------------TV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 88 ~fiG~~~~----------------------------------~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
|-+|=+.. .. ..+.+..|++.+|.-+.|.
T Consensus 369 YA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 369 YAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred EEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 99886544 12 2378899999999888774
No 45
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.95 E-value=0.48 Score=44.76 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=44.4
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCCCeEecCCcccccccccccCCCCCeEEEccCCCc-chhhHHHHHHHHHHHHH
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLM 113 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~~ 113 (216)
++++|.||+|+|+..+..++....++...++.+ ..-...+..+.|++|.+|=.... .....+..|++.+|..+
T Consensus 366 ~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i-~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i 439 (564)
T PRK12771 366 TLEADLVVLAIGQDIDSAGLESVPGVEVGRGVV-QVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI 439 (564)
T ss_pred EEECCEEEECcCCCCchhhhhhccCcccCCCCE-EeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence 469999999999998877776423343122222 11122334578999999976542 23455566666665443
No 46
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.87 E-value=0.17 Score=51.03 Aligned_cols=78 Identities=12% Similarity=0.003 Sum_probs=53.3
Q ss_pred CCEEeccEEEEcCCCCCCCCCCCCCCCeEecCC-cccccccccccCCCCCeEEEccCCC-cchhhHHHHHHHHHHHHHhC
Q psy14914 38 GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGIPGD-TVVFYMFDLQVRFFLQLMKG 115 (216)
Q Consensus 38 G~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~~ly~~~~~~~~P~L~fiG~~~~-~~~~~~~e~Qa~~ia~~~~g 115 (216)
+.++++|.||+|+|+.+...++.. .|+..++. ++ .. ...+-.+.|++|.+|=... ......+-.|++.+|+.+.+
T Consensus 763 ~~~I~aD~VIvAIG~~Pntelle~-~GL~ld~~G~I-~V-DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~ 839 (1019)
T PRK09853 763 TVTLEADTVITAIGEQVDTELLKA-NGIPLDKKGWP-VV-DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILS 839 (1019)
T ss_pred eEEEEeCEEEECCCCcCChhHHHh-cCccccCCCCE-Ee-CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhh
Confidence 345799999999999998777743 34443332 22 11 2223346899999997754 33556788999999998877
Q ss_pred CCC
Q psy14914 116 YVT 118 (216)
Q Consensus 116 ~~~ 118 (216)
...
T Consensus 840 ~~~ 842 (1019)
T PRK09853 840 REG 842 (1019)
T ss_pred hcC
Confidence 543
No 47
>PLN02546 glutathione reductase
Probab=93.79 E-value=0.41 Score=45.41 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=61.6
Q ss_pred CcEEcC--CceEEec---CcE--EEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCC-ccc-ccccccccCCCCCe
Q psy14914 18 NVVKKP--DIAELTP---TGV--RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNK-NVQ-PLYKHLINIEHPSM 87 (216)
Q Consensus 18 ~V~~~~--~I~~~~~---~~V--~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~-~v~-~ly~~~~~~~~P~L 87 (216)
+|++.. .+.++++ +.+ .+.+|+...+|.||+|+|+++...+|. +..++..+++ .+. .-|.+ .+.||+
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~---Ts~p~I 383 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR---TSVPSI 383 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCce---eCCCCE
Confidence 477653 4677753 223 334554456899999999999877653 2344444332 221 22333 368999
Q ss_pred EEEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 88 CIIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 88 ~fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|-+|=+... ...+.+-.|++.+|..+.|.
T Consensus 384 YAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 384 WAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred EEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999966543 34578899999999988774
No 48
>PRK14694 putative mercuric reductase; Provisional
Probab=93.74 E-value=0.56 Score=43.13 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=61.2
Q ss_pred CcEEcC--CceEEec--CcEEEc-CCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCccc-ccccccccCCCCCeEEE
Q psy14914 18 NVVKKP--DIAELTP--TGVRFQ-DGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQ-PLYKHLINIEHPSMCII 90 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~V~f~-dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v~-~ly~~~~~~~~P~L~fi 90 (216)
+|++.. .+++++. +.+.+. ++.++++|.||+|||..+...++. ...++..+++.+. .-|.. ...|++|-+
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~---Ts~~~IyA~ 308 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQ---TTVSGIYAA 308 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcc---cCCCCEEEE
Confidence 467653 5777764 223332 444689999999999999877653 2234433322221 12222 368999999
Q ss_pred ccCCC-cchhhHHHHHHHHHHHHHhCC
Q psy14914 91 GIPGD-TVVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 91 G~~~~-~~~~~~~e~Qa~~ia~~~~g~ 116 (216)
|=... ....+.+..|++.+|.-+.|.
T Consensus 309 GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 309 GDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred eecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 96643 234567888999999888764
No 49
>PRK14727 putative mercuric reductase; Provisional
Probab=93.37 E-value=0.79 Score=42.37 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=61.2
Q ss_pred CcEEcC--CceEEe--cCcE--EEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCC-ccc-ccccccccCCCCCeE
Q psy14914 18 NVVKKP--DIAELT--PTGV--RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNK-NVQ-PLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~~--~I~~~~--~~~V--~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~-~v~-~ly~~~~~~~~P~L~ 88 (216)
+|++.. .+++++ ++++ .+.+| ++++|.||+|||..+...+|. ...++..+.+ .+. .-|.. .+.||+|
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~---Ts~~~Iy 317 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAME---TSAPDIY 317 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCee---cCCCCEE
Confidence 466653 477775 3333 33444 579999999999999876653 2334544332 221 11222 3689999
Q ss_pred EEccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 89 IIGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 89 fiG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
-+|=+... ...+.+..|++.+|.-+.|.
T Consensus 318 A~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 318 AAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred EeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 99976543 34577888999999988774
No 50
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.14 E-value=0.87 Score=41.43 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=61.3
Q ss_pred CcEEc--CCceEEec--CcEEEc-CCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCC-ccc-ccccccccCCCCCeEE
Q psy14914 18 NVVKK--PDIAELTP--TGVRFQ-DGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNK-NVQ-PLYKHLINIEHPSMCI 89 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~V~f~-dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~-~v~-~ly~~~~~~~~P~L~f 89 (216)
+|++. ..|+++++ +++.+. ++.++++|.||+|||..+...++. ...++.+++. .+. .-|.+ .+.||+|-
T Consensus 213 gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~---Ts~~~IyA 289 (441)
T PRK08010 213 GVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLH---TTADNIWA 289 (441)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcc---cCCCCEEE
Confidence 47775 24888874 334433 233578999999999998876553 2344554432 221 12222 36899999
Q ss_pred EccCCCc-chhhHHHHHHHHHHHHHhCC
Q psy14914 90 IGIPGDT-VVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 90 iG~~~~~-~~~~~~e~Qa~~ia~~~~g~ 116 (216)
+|=.... ...+.+..|++.++.-+.|.
T Consensus 290 ~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 290 MGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred eeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 9977653 23467788899888877763
No 51
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.47 E-value=0.56 Score=41.41 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=45.3
Q ss_pred CEEeccEEEEcCCCCCCCCCCCCCCCeEecCC-ccc-ccccccccCCCCCeEEEccCCC-cchhhHHHHHHHHHHHHHh
Q psy14914 39 SYEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQ-PLYKHLINIEHPSMCIIGIPGD-TVVFYMFDLQVRFFLQLMK 114 (216)
Q Consensus 39 ~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~-~ly~~~~~~~~P~L~fiG~~~~-~~~~~~~e~Qa~~ia~~~~ 114 (216)
+++++|.||+|+|+.+...+.....++..+.. .+. .-+.. ...|++|.+|=... ......+..|++.+|.-+.
T Consensus 271 ~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~---t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~ 346 (352)
T PRK12770 271 FVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHM---TSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIH 346 (352)
T ss_pred EEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcc---cCCCCEEEEcccccCcchHHHHHHHHHHHHHHHH
Confidence 35799999999999987655443244433332 220 11222 36799999996543 3345667777777776553
No 52
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.38 E-value=1.1 Score=41.44 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=63.6
Q ss_pred CceEEecC----cEEEcCCC--EEeccEEEEcCCCCCCCCCCC-CCCCeEecCC-ccc-ccccccccCCCCCeEEEccCC
Q psy14914 24 DIAELTPT----GVRFQDGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNK-NVQ-PLYKHLINIEHPSMCIIGIPG 94 (216)
Q Consensus 24 ~I~~~~~~----~V~f~dG~--~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~-~v~-~ly~~~~~~~~P~L~fiG~~~ 94 (216)
.+++++.+ .+.+++|+ ++++|.|++|||=++..+-|. +..|+.+++. .+. . +. +-.+.||+|-+|=..
T Consensus 236 ~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~--~~Tnvp~IyA~GDV~ 312 (454)
T COG1249 236 KVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQ--MTTNVPGIYAIGDVI 312 (454)
T ss_pred eEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-Cc--cccCCCCEEEeeccC
Confidence 46666542 37788887 578999999999999887554 3456766664 321 2 22 234589999999774
Q ss_pred Cc-chhhHHHHHHHHHHHHHhC
Q psy14914 95 DT-VVFYMFDLQVRFFLQLMKG 115 (216)
Q Consensus 95 ~~-~~~~~~e~Qa~~ia~~~~g 115 (216)
.. ...+.+..|++.+|..+.|
T Consensus 313 ~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 313 GGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred CCcccHhHHHHHHHHHHHHHhC
Confidence 33 3458999999999999886
No 53
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.30 E-value=1.3 Score=40.58 Aligned_cols=71 Identities=8% Similarity=-0.082 Sum_probs=45.1
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCCCeEecCC-ccc-ccccccccCCCCCeEEEccCCCc-chhhHHHHHHHHHHHHHh
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQ-PLYKHLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLMK 114 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~-~ly~~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~~~ 114 (216)
++++|.||+|+|+.+...++.. .++.++.. .+. .-+ +-.+.|++|.+|=.... .....+-.|++.+|..+.
T Consensus 373 ~i~~D~Vi~AiG~~p~~~~l~~-~gl~~~~~G~i~vd~~---~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 373 KLEADAVIVAIGNGSNPIMAET-TRLKTSERGTIVVDED---QRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred EEECCEEEECCCCCCCchhhhc-cCcccCCCCeEEeCCC---CccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4799999999999988655542 33433322 110 111 12357999999976543 345677788888887654
No 54
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=92.14 E-value=0.17 Score=49.08 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=53.1
Q ss_pred CcEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCCcccccccccccCCCCCeEEEccCCC-----c-chhhHHHH
Q psy14914 31 TGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGD-----T-VVFYMFDL 104 (216)
Q Consensus 31 ~~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~fiG~~~~-----~-~~~~~~e~ 104 (216)
.+|.|+||+.+++|.||+|+|+++...+- .+.|+.++..-+-.-|.+ ..+|+++-+|=+.. . ..+|.. -
T Consensus 220 ~~vr~~DG~~i~ad~VV~a~GIrPn~ela-~~aGlavnrGIvvnd~mq---TsdpdIYAvGEcae~~g~~yGLVaP~y-e 294 (793)
T COG1251 220 EGVRFADGTEIPADLVVMAVGIRPNDELA-KEAGLAVNRGIVVNDYMQ---TSDPDIYAVGECAEHRGKVYGLVAPLY-E 294 (793)
T ss_pred eeEeecCCCcccceeEEEecccccccHhH-HhcCcCcCCCeeeccccc---ccCCCeeehhhHHHhcCccceehhHHH-H
Confidence 67999999999999999999999875432 223343333222122222 36889999885532 1 245554 4
Q ss_pred HHHHHHHHHhCC
Q psy14914 105 QVRFFLQLMKGY 116 (216)
Q Consensus 105 Qa~~ia~~~~g~ 116 (216)
|++.+|..+.|.
T Consensus 295 q~~v~a~hl~~~ 306 (793)
T COG1251 295 QAKVLADHLCGG 306 (793)
T ss_pred HHHHHHHHhccC
Confidence 688888888775
No 55
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.12 E-value=0.55 Score=47.54 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=52.3
Q ss_pred CCC--EEeccEEEEcCCCCCCCCCCCCCCCeEecCC-cccccccccccCCCCCeEEEccCCC-cchhhHHHHHHHHHHHH
Q psy14914 37 DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGIPGD-TVVFYMFDLQVRFFLQL 112 (216)
Q Consensus 37 dG~--~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~~ly~~~~~~~~P~L~fiG~~~~-~~~~~~~e~Qa~~ia~~ 112 (216)
+|+ ++++|.||+|+|+.++..++.. .++..+.. .+ ..=......+.|++|.+|=... ......+-.|++.+|..
T Consensus 757 ~Gee~~I~aD~VIvAiG~~Pnt~lle~-~GL~ld~~G~I-~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~n 834 (1012)
T TIGR03315 757 TGETVDLPADTVIAAVGEQVDTDLLQK-NGIPLDEYGWP-VVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANA 834 (1012)
T ss_pred CCCeEEEEeCEEEEecCCcCChHHHHh-cCcccCCCCCE-EeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHH
Confidence 455 4699999999999988776643 34443322 22 1111122346799999997653 34567788999999988
Q ss_pred HhCCC
Q psy14914 113 MKGYV 117 (216)
Q Consensus 113 ~~g~~ 117 (216)
+.++.
T Consensus 835 Il~~~ 839 (1012)
T TIGR03315 835 ILSRE 839 (1012)
T ss_pred Hhccc
Confidence 87654
No 56
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.67 E-value=0.31 Score=38.02 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=26.7
Q ss_pred CCCcEEc---CCceEEec--C--cEEEcCCCEEeccEEEEcCCC
Q psy14914 16 PNNVVKK---PDIAELTP--T--GVRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 16 p~~V~~~---~~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy 52 (216)
|.+|++. ..+..+.. + .|++.||+.+.+|.||+|||.
T Consensus 112 ~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 112 PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 4444442 45666653 2 378899999999999999995
No 57
>PRK12831 putative oxidoreductase; Provisional
Probab=91.23 E-value=1.3 Score=40.88 Aligned_cols=73 Identities=8% Similarity=-0.032 Sum_probs=43.4
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCCCeEecCC-cccccccccccCCCCCeEEEccCCCc-chhhHHHHHHHHHHHHH
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLM 113 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~~ly~~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~~ 113 (216)
.+++|.||+|+|+.++..++....++..++. .+ ..=...+-.+.|++|.+|=.... .....+-.|++.+|..+
T Consensus 382 ~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i-~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I 456 (464)
T PRK12831 382 VLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCI-VADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAI 456 (464)
T ss_pred EEECCEEEECCCCCCChhhhcccCCceECCCCcE-EECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHH
Confidence 4799999999999988766654344544332 22 11111123467999999966442 23345555555555443
No 58
>KOG1336|consensus
Probab=90.82 E-value=0.54 Score=43.38 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=48.8
Q ss_pred CcEEc--CCceEEecCc------EEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCCcccccccccccCCCCCeEE
Q psy14914 18 NVVKK--PDIAELTPTG------VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCI 89 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~~------V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~f 89 (216)
.|+++ ..+.+++++. |.+.||+++++|.||++||=++.-+|+.. +...+...--..+..+ -...||++-
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~--g~~~~~~G~i~V~~~f-~t~~~~VyA 345 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK--GILLDSKGGIKVDEFF-QTSVPNVYA 345 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc--cceecccCCEeehhce-eeccCCccc
Confidence 35554 4577887533 78899999999999999999999888874 2222222211222222 234888888
Q ss_pred EccCC
Q psy14914 90 IGIPG 94 (216)
Q Consensus 90 iG~~~ 94 (216)
+|=..
T Consensus 346 iGDva 350 (478)
T KOG1336|consen 346 IGDVA 350 (478)
T ss_pred cccee
Confidence 88554
No 59
>PRK10262 thioredoxin reductase; Provisional
Probab=90.76 E-value=0.55 Score=40.75 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=54.8
Q ss_pred CcEEcC--CceEEecC-----cEEEcCC------CEEeccEEEEcCCCCCCCCCCCCCCCeEecCCcc--cc-ccccccc
Q psy14914 18 NVVKKP--DIAELTPT-----GVRFQDG------SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNV--QP-LYKHLIN 81 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~-----~V~f~dG------~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v--~~-ly~~~~~ 81 (216)
+|++.. .|.+++++ +|++.++ +++++|.||+|+|+.+...++... +..++.++ .+ +.-.-..
T Consensus 199 gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~--l~~~~g~i~vd~~~~~~~~~ 276 (321)
T PRK10262 199 NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQ--LELENGYIKVQSGIHGNATQ 276 (321)
T ss_pred CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhcc--ccccCCEEEECCCCcccccc
Confidence 477654 48888765 4777653 257999999999999886655422 22222222 11 1000124
Q ss_pred CCCCCeEEEccCCCcc------hhhHHHHHHHHHHHHHhC
Q psy14914 82 IEHPSMCIIGIPGDTV------VFYMFDLQVRFFLQLMKG 115 (216)
Q Consensus 82 ~~~P~L~fiG~~~~~~------~~~~~e~Qa~~ia~~~~g 115 (216)
.+.|++|-+|=+.... ...-.-..|..+.+++.+
T Consensus 277 t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 277 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred cCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHh
Confidence 5789999998665321 123333445555555544
No 60
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.35 E-value=1.3 Score=40.99 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=44.2
Q ss_pred EEeccEEEEcCCCCCCC-CCCCCCCCeEecCCc-c--cccccccccCCCCCeEEEccCCCcc-hhhHHHHHHHHHHHHHh
Q psy14914 40 YEQVDIILYCTGYTYRY-PFLHESCGIKVVNKN-V--QPLYKHLINIEHPSMCIIGIPGDTV-VFYMFDLQVRFFLQLMK 114 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~-pfl~~~~~l~~~~~~-v--~~ly~~~~~~~~P~L~fiG~~~~~~-~~~~~e~Qa~~ia~~~~ 114 (216)
++++|.||+|+|+.++. +++.. .++.+++.. + .+.|+..+..+.|++|.+|=..... ....+-.|++.+|..+.
T Consensus 384 ~i~~D~Vi~a~G~~p~~~~~~~~-~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 384 VLPADVVIMAFGFQPHAMPWLAG-HGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred EEECCEEEECCcCCCCccccccc-cCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 46999999999999874 44432 334333221 1 1122222334689999999765432 33556777777776543
No 61
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.68 E-value=0.66 Score=43.35 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=52.8
Q ss_pred CcEEcC--CceEEecC-----cEEEcCC-----CEEeccEEEEcCCCCCCCCCCCCCCCeEecC-Cccc-ccccccccCC
Q psy14914 18 NVVKKP--DIAELTPT-----GVRFQDG-----SYEQVDIILYCTGYTYRYPFLHESCGIKVVN-KNVQ-PLYKHLINIE 83 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~-----~V~f~dG-----~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~-~~v~-~ly~~~~~~~ 83 (216)
+|++.. .|.++.++ +|++.|+ +++++|.||+|+|..+..+++... +..++ +++. .-+.+ .+
T Consensus 402 gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~--~~~~~~G~I~vd~~~~---Ts 476 (515)
T TIGR03140 402 NVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA--VELNRRGEIVIDERGR---TS 476 (515)
T ss_pred CCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh--cccCCCCeEEECCCCC---CC
Confidence 577653 47788754 4777653 246999999999999987777532 22222 1220 11222 36
Q ss_pred CCCeEEEccCCCc--chhhHHHHHHHHHHHH
Q psy14914 84 HPSMCIIGIPGDT--VVFYMFDLQVRFFLQL 112 (216)
Q Consensus 84 ~P~L~fiG~~~~~--~~~~~~e~Qa~~ia~~ 112 (216)
.|++|-+|=+... .....+-.|+.-+|..
T Consensus 477 ~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~ 507 (515)
T TIGR03140 477 VPGIFAAGDVTTVPYKQIIIAMGEGAKAALS 507 (515)
T ss_pred CCCEEEcccccCCccceEEEEEccHHHHHHH
Confidence 8999999976542 1223344444444433
No 62
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.46 E-value=1.1 Score=41.82 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=52.7
Q ss_pred CcEEcC--CceEEecC-----cEEEcC---CC--EEeccEEEEcCCCCCCCCCCCCCCCeEecC-CcccccccccccCCC
Q psy14914 18 NVVKKP--DIAELTPT-----GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVN-KNVQPLYKHLINIEH 84 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~-----~V~f~d---G~--~~~~D~II~aTGy~~~~pfl~~~~~l~~~~-~~v~~ly~~~~~~~~ 84 (216)
+|++.. .+.++.++ +|++.| |+ ++++|.|++|+|+.+...++... +..++ +.+ +-...+-.+.
T Consensus 401 gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~--v~~~~~g~i--~vd~~l~Ts~ 476 (517)
T PRK15317 401 NVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT--VELNRRGEI--IVDARGATSV 476 (517)
T ss_pred CcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh--eeeCCCCcE--EECcCCCCCC
Confidence 677754 47777765 356653 43 36899999999999987777542 33332 222 1111112478
Q ss_pred CCeEEEccCCCcc--hhhHHHHHHHHHH
Q psy14914 85 PSMCIIGIPGDTV--VFYMFDLQVRFFL 110 (216)
Q Consensus 85 P~L~fiG~~~~~~--~~~~~e~Qa~~ia 110 (216)
|++|.+|=..... ....+..++.-+|
T Consensus 477 p~IyAaGDv~~~~~k~~~~A~~eG~~Aa 504 (517)
T PRK15317 477 PGVFAAGDCTTVPYKQIIIAMGEGAKAA 504 (517)
T ss_pred CCEEECccccCCCCCEEEEhhhhHHHHH
Confidence 9999999775431 2334444444444
No 63
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.11 E-value=2 Score=41.41 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=44.6
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCCCeEecC-CcccccccccccCCCCCeEEEccCCCc-chhhHHHHHHHHHH----HHH
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESCGIKVVN-KNVQPLYKHLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFL----QLM 113 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~~l~~~~-~~v~~ly~~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia----~~~ 113 (216)
.+++|.||+|+|+.++..++.. .++..+. +++ ..-...+-.+.|++|.+|=.... .....+-.|++.+| +++
T Consensus 423 ~i~~D~VI~AiG~~p~~~ll~~-~gl~~~~~G~I-~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L 500 (652)
T PRK12814 423 TLQADTVISAIGQQVDPPIAEA-AGIGTSRNGTV-KVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFL 500 (652)
T ss_pred EEECCEEEECCCCcCCcccccc-cCccccCCCcE-eeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999988777643 3343332 222 11122233567999999966432 23344555665555 455
Q ss_pred hCC
Q psy14914 114 KGY 116 (216)
Q Consensus 114 ~g~ 116 (216)
.|+
T Consensus 501 ~g~ 503 (652)
T PRK12814 501 NGK 503 (652)
T ss_pred cCC
Confidence 564
No 64
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=88.58 E-value=2.5 Score=39.27 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=40.8
Q ss_pred EEeccEEEEcCCCC-CCCCCCCCCCCeEecC-CcccccccccccCCCCCeEEEccCCCc-chhhHHHHHHHHHHHH
Q psy14914 40 YEQVDIILYCTGYT-YRYPFLHESCGIKVVN-KNVQPLYKHLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQL 112 (216)
Q Consensus 40 ~~~~D~II~aTGy~-~~~pfl~~~~~l~~~~-~~v~~ly~~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~ 112 (216)
++++|.||+|+|.. +..+++.. .++..+. +.+ ..-......+.|++|.+|=.... .....+..|++.+|..
T Consensus 400 ~i~~D~Vi~AiG~~~p~~~~~~~-~gl~~~~~G~i-~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~ 473 (485)
T TIGR01317 400 VFEADLVLLAMGFVGPEQILLDD-FGVKKTRRGNI-SAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAA 473 (485)
T ss_pred EEECCEEEEccCcCCCccccccc-cCcccCCCCCE-EecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHH
Confidence 47999999999996 65666653 3443322 222 11111224568999999865432 2234455666665544
No 65
>PRK13984 putative oxidoreductase; Provisional
Probab=87.15 E-value=1.6 Score=41.48 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=42.4
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCC--CeEecCCccc-ccccccccCCCCCeEEEccCCCcchhhHHHHHHHHHHHHH
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESC--GIKVVNKNVQ-PLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLM 113 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~--~l~~~~~~v~-~ly~~~~~~~~P~L~fiG~~~~~~~~~~~e~Qa~~ia~~~ 113 (216)
++++|.||+|+|+.+...+|..+. ++..+.+.+. .-+ +-.+.|++|.+|=.........+-.+++.+|..+
T Consensus 524 ~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~---~~Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I 597 (604)
T PRK13984 524 IVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEY---GQTSIPWLFAGGDIVHGPDIIHGVADGYWAAEGI 597 (604)
T ss_pred EEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCC---CccCCCCEEEecCcCCchHHHHHHHHHHHHHHHH
Confidence 579999999999998877765322 2322222220 111 2346899999997765433334455566655544
No 66
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=86.31 E-value=3.2 Score=40.70 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=44.1
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCCCeEecCC-cccccccccccCCCCCeEEEccCCCc-chhhHHHHHHHHHHHHHh
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLMK 114 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~~ly~~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~~~ 114 (216)
++++|.||+|+|+.++..++....++.+++. .+ ..=.. ...+.|++|-+|=.... .....+-.|++.+|..+.
T Consensus 672 ~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i-~vd~~-~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 672 TVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTI-VVDEE-MQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred EEECCEEEECcCCCCCccccccccCceECCCCCE-EeCCC-CCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 3699999999999988655543224444332 22 11011 13568999999976543 234556666666665543
No 67
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=85.88 E-value=1.2 Score=39.25 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=34.4
Q ss_pred CcEEc-CCceEEec--CcEEEcCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK-PDIAELTP--TGVRFQDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~-~~I~~~~~--~~V~f~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|+++ ..+.+++. +.|.++||+++..|.+|+|||-.+.+|-++
T Consensus 68 gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~ 113 (364)
T TIGR03169 68 GARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE 113 (364)
T ss_pred CCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCC
Confidence 46664 46888874 568999999999999999999998876554
No 68
>KOG2495|consensus
Probab=84.98 E-value=4.4 Score=37.29 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=59.5
Q ss_pred CcEEcC--CceEEecCcEEEcCC----CEEeccEEEEcCCCCCCCCCCCCC-CCeEecCCc-c-cccccccccCCCCCeE
Q psy14914 18 NVVKKP--DIAELTPTGVRFQDG----SYEQVDIILYCTGYTYRYPFLHES-CGIKVVNKN-V-QPLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~V~f~dG----~~~~~D~II~aTGy~~~~pfl~~~-~~l~~~~~~-v-~~ly~~~~~~~~P~L~ 88 (216)
+|.++. .++.++++.++..++ ++++.-.+||+||=... |+...- .++.-.+.+ + -.-|.. ..+.+|+|
T Consensus 287 ~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~Lr--V~G~~nvf 363 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLR--VKGVKNVF 363 (491)
T ss_pred cceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceee--ccCcCceE
Confidence 466653 588899988877655 45678999999998765 332210 011111100 0 011222 36788999
Q ss_pred EEccCCC-c---chhhHHHHHHHHHHHHHhC
Q psy14914 89 IIGIPGD-T---VVFYMFDLQVRFFLQLMKG 115 (216)
Q Consensus 89 fiG~~~~-~---~~~~~~e~Qa~~ia~~~~g 115 (216)
-||=+.. . .+-.+++.|+.|+|+.|.-
T Consensus 364 AiGDca~~~~~~~tAQVA~QqG~yLAk~fn~ 394 (491)
T KOG2495|consen 364 AIGDCADQRGLKPTAQVAEQQGAYLAKNFNK 394 (491)
T ss_pred EeccccccccCccHHHHHHHHHHHHHHHHHH
Confidence 9997652 1 1447999999999999963
No 69
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=84.80 E-value=2.3 Score=39.11 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=38.1
Q ss_pred EEEcCCCEE--eccEEEEcCCCCCCCCCCCCCCCeEe-cCCccc-ccccccccCCCCCeEEEccCCCcc
Q psy14914 33 VRFQDGSYE--QVDIILYCTGYTYRYPFLHESCGIKV-VNKNVQ-PLYKHLINIEHPSMCIIGIPGDTV 97 (216)
Q Consensus 33 V~f~dG~~~--~~D~II~aTGy~~~~pfl~~~~~l~~-~~~~v~-~ly~~~~~~~~P~L~fiG~~~~~~ 97 (216)
|..++|... .+|.||+|||+ ++.|.++.-.|+.. .+..++ .-|.+...-.-.+..+||..++..
T Consensus 121 V~~~~~~~~~~~a~~vV~ATG~-~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~ 188 (443)
T COG2072 121 VTTSDGGTGELTADFVVVATGH-LSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAV 188 (443)
T ss_pred EEEcCCCeeeEecCEEEEeecC-CCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHH
Confidence 667777664 49999999999 67676664323321 121111 123333222235889999988753
No 70
>PRK07846 mycothione reductase; Reviewed
Probab=81.16 E-value=3.1 Score=38.18 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=31.7
Q ss_pred CcEEcCCceE-EecCcEEEcCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKKPDIAE-LTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~~~I~~-~~~~~V~f~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|++...-.+ +++++|...+|+++.+|.||+|||=++..|-++
T Consensus 103 ~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~ 146 (451)
T PRK07846 103 NIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVI 146 (451)
T ss_pred CcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCC
Confidence 5666544333 446779998898899999999999877665443
No 71
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=80.74 E-value=3 Score=35.08 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=27.9
Q ss_pred CCceEEecC----cEEEcCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 23 PDIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 23 ~~I~~~~~~----~V~f~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
..+.+++.. .|.+.+|.++.+|.||+|||-.+..|.++
T Consensus 77 ~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~ 118 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP 118 (300)
T ss_pred EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC
Confidence 346666643 36677888899999999999977655444
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=80.70 E-value=6.1 Score=40.10 Aligned_cols=92 Identities=9% Similarity=-0.032 Sum_probs=56.0
Q ss_pred CcEEcC--CceEEecC----cEEEc----CCCEEeccEEEEcCCCCCCCCCCCC-CCCeEecCCcccccccccccCCCCC
Q psy14914 18 NVVKKP--DIAELTPT----GVRFQ----DGSYEQVDIILYCTGYTYRYPFLHE-SCGIKVVNKNVQPLYKHLINIEHPS 86 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~----~V~f~----dG~~~~~D~II~aTGy~~~~pfl~~-~~~l~~~~~~v~~ly~~~~~~~~P~ 86 (216)
+|+++. .|.++.++ +|.+. +++++++|.|++++|+.+...++.. ...+.+++.. ..|.- ..+.|+
T Consensus 365 GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~--~~~~~--~t~v~g 440 (985)
T TIGR01372 365 GIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAI--AAFLP--GDAVQG 440 (985)
T ss_pred CCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeecccc--Cceec--CCCCCC
Confidence 466653 47777754 46665 4556799999999999988665432 1223333221 11111 145799
Q ss_pred eEEEccCCCcchhhHHHHHHHHHHHHH
Q psy14914 87 MCIIGIPGDTVVFYMFDLQVRFFLQLM 113 (216)
Q Consensus 87 L~fiG~~~~~~~~~~~e~Qa~~ia~~~ 113 (216)
++.+|=.........+..+++.++..+
T Consensus 441 VyaaGD~~g~~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 441 CILAGAANGLFGLAAALADGAAAGAAA 467 (985)
T ss_pred eEEeeccCCccCHHHHHHHHHHHHHHH
Confidence 999997665444455666676666554
No 73
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=80.08 E-value=2.2 Score=38.70 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=28.1
Q ss_pred CCcEEc-CCceEEec-----CcEEEcCCCEEeccEEEEcCCC
Q psy14914 17 NNVVKK-PDIAELTP-----TGVRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 17 ~~V~~~-~~I~~~~~-----~~V~f~dG~~~~~D~II~aTGy 52 (216)
+||++. ..|..+.. .+|+..+|+.+.+|+||.|||-
T Consensus 109 ~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 477775 56888853 5689999999999999999997
No 74
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.09 E-value=9.8 Score=36.70 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=43.3
Q ss_pred EEeccEEEEcCCCCCCC-CCCCCCCCeEecCC-ccc-cccc-ccccCCCCCeEEEccCCCc-chhhHHHHHHHHHHHHHh
Q psy14914 40 YEQVDIILYCTGYTYRY-PFLHESCGIKVVNK-NVQ-PLYK-HLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLMK 114 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~-pfl~~~~~l~~~~~-~v~-~ly~-~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~~~ 114 (216)
++++|.||+|+|+.+.- .++.. .++.++.. .+. .-.. ..+-.+.|++|-+|=.... .....+-.|++.+|..+.
T Consensus 570 ~i~~D~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 570 VMPADAVIMAFGFNPHGMPWLES-HGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred EEECCEEEECccCCCCccccccc-cCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 47999999999999863 35543 34443322 110 0000 0123467999999966543 234566677777776553
No 75
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=78.45 E-value=2.4 Score=33.65 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=18.6
Q ss_pred CCceEEec--C--cEEEcCCCEEeccEEEEcCCC
Q psy14914 23 PDIAELTP--T--GVRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 23 ~~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy 52 (216)
..|++++. + .|.+.+|.++.+|.||+|||.
T Consensus 103 ~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 103 TRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp --EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 34666663 2 288888978899999999996
No 76
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=78.13 E-value=5.3 Score=35.81 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=31.8
Q ss_pred CcEEcC--CceEEec--CcEEEcCCCEEeccEEEEcCCCCCC-CCC
Q psy14914 18 NVVKKP--DIAELTP--TGVRFQDGSYEQVDIILYCTGYTYR-YPF 58 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~V~f~dG~~~~~D~II~aTGy~~~-~pf 58 (216)
+|++.. .+.+++. +.|++.||+++.+|.+|+|||=.+. +|.
T Consensus 72 ~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~ 117 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPL 117 (396)
T ss_pred CCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCC
Confidence 577763 3777864 4588999999999999999999864 344
No 77
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=77.64 E-value=8.2 Score=39.35 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=42.3
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCCCeEecCC-ccccccc----ccccCCCCCeEEEccCCCc-chhhHHHHHHHHHHHH
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYK----HLINIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQL 112 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~-~v~~ly~----~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ia~~ 112 (216)
++++|.||+|+|+.++..++....++.++.. .+ ..-. ..+-.+.|++|.+|=.... .....+-.|++.+|..
T Consensus 672 ~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I-~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~ 749 (1006)
T PRK12775 672 DLECDTVIYALGTKANPIITQSTPGLALNKWGNI-AADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARS 749 (1006)
T ss_pred EEEcCEEEECCCcCCChhhhhccCCcccCCCCcE-EeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHH
Confidence 4799999999999988655432222332221 11 1111 2234578999999976543 2345566666666654
No 78
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=77.56 E-value=4 Score=36.46 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=30.5
Q ss_pred CcEEcCCceEEecCcEEEcCCCEEeccEEEEcCCCCC
Q psy14914 18 NVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 18 ~V~~~~~I~~~~~~~V~f~dG~~~~~D~II~aTGy~~ 54 (216)
.|.....|.++++++|.+.||+++.+|.||-|+|.+.
T Consensus 102 ~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 102 GVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred cEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 3444456888888889999999999999999999764
No 79
>PRK06116 glutathione reductase; Validated
Probab=76.87 E-value=3.7 Score=37.42 Aligned_cols=41 Identities=22% Similarity=0.096 Sum_probs=29.4
Q ss_pred CcEEc-CCceEEecCcEEEcCCCEEeccEEEEcCCCCCCCCCC
Q psy14914 18 NVVKK-PDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 18 ~V~~~-~~I~~~~~~~V~f~dG~~~~~D~II~aTGy~~~~pfl 59 (216)
+|+++ +....++++.|.. ||+++.+|.||+|||-.+..|-+
T Consensus 107 gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 107 GVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDI 148 (450)
T ss_pred CCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCC
Confidence 45554 3355556677777 78788999999999987655544
No 80
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=76.73 E-value=8.2 Score=39.10 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=48.5
Q ss_pred EEeccEEEEcCCCCCCCCCCCCCCCeEecCCc-ccccccccccCCCCCeEEEccCCCcc-hhhHHHHHHHHHHHHHhCCC
Q psy14914 40 YEQVDIILYCTGYTYRYPFLHESCGIKVVNKN-VQPLYKHLINIEHPSMCIIGIPGDTV-VFYMFDLQVRFFLQLMKGYV 117 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~-v~~ly~~~~~~~~P~L~fiG~~~~~~-~~~~~e~Qa~~ia~~~~g~~ 117 (216)
++++|.||+|+|+.....+.....++..+... + ..-...+-.+.|++|.+|=..... ....+-.+++-+|..+...+
T Consensus 548 ~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I-~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 548 RVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTI-EVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred EEECCEEEEcCCcCCChhhhhcccCceECCCCCE-EECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 36999999999999764332222344433222 2 111112234679999999665442 34556677888888777665
Q ss_pred CCC
Q psy14914 118 TLP 120 (216)
Q Consensus 118 ~LP 120 (216)
.+.
T Consensus 627 ~~~ 629 (944)
T PRK12779 627 PFT 629 (944)
T ss_pred ccc
Confidence 543
No 81
>PLN02546 glutathione reductase
Probab=74.07 E-value=5 Score=38.10 Aligned_cols=42 Identities=21% Similarity=0.130 Sum_probs=31.2
Q ss_pred CcEEcC-CceEEecCcEEEcCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKKP-DIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~~-~I~~~~~~~V~f~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|+++. ..+.++.+.|.. ||+++.+|.||+|||-++..|-++
T Consensus 192 gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~Ip 234 (558)
T PLN02546 192 GVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIP 234 (558)
T ss_pred CcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCC
Confidence 466653 455666777766 788889999999999988766544
No 82
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=73.31 E-value=8.1 Score=38.21 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=32.8
Q ss_pred CcEEcC--CceEEec--CcEEEcCCCEEeccEEEEcCCCCCCCCCC
Q psy14914 18 NVVKKP--DIAELTP--TGVRFQDGSYEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~V~f~dG~~~~~D~II~aTGy~~~~pfl 59 (216)
+|+++. .+.+++. +.|++.+|+++.+|.+|+|||-.+..|-+
T Consensus 68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~i 113 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPI 113 (785)
T ss_pred CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCC
Confidence 577763 4888875 55899999999999999999987654433
No 83
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=72.99 E-value=5.6 Score=36.09 Aligned_cols=42 Identities=7% Similarity=-0.098 Sum_probs=30.9
Q ss_pred cEEc-CCceEEec--CcEEE----------cCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 19 VVKK-PDIAELTP--TGVRF----------QDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 19 V~~~-~~I~~~~~--~~V~f----------~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
++.. ..+.+|+. +.|.+ .+|.++++|.+|+|||-.+.++-++
T Consensus 77 ~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ip 131 (424)
T PTZ00318 77 NRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIP 131 (424)
T ss_pred eEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCC
Confidence 4443 56888874 55777 4677889999999999987765443
No 84
>KOG3851|consensus
Probab=72.45 E-value=1.8 Score=38.56 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCCCCCcEE-cCCceEEec--CcEEEcCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 13 LRFPNNVVK-KPDIAELTP--TGVRFQDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 13 ~~~p~~V~~-~~~I~~~~~--~~V~f~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+-+|++.+. +..+++|++ ++|++.+|+++..|-.|.|+|-+.+|.-+.
T Consensus 101 ~liP~~a~wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik 151 (446)
T KOG3851|consen 101 SLIPKGATWIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK 151 (446)
T ss_pred ccccCCcHHHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence 447777665 456999986 679999999999999999999999886553
No 85
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=72.09 E-value=16 Score=35.25 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=41.4
Q ss_pred EEeccEEEEcCCCCCC-CCCCCCCCCeEecCCc-cc-ccc-cccccCCCCCeEEEccCCCcc-hhhHHHHHHHHHHHHHh
Q psy14914 40 YEQVDIILYCTGYTYR-YPFLHESCGIKVVNKN-VQ-PLY-KHLINIEHPSMCIIGIPGDTV-VFYMFDLQVRFFLQLMK 114 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~-~pfl~~~~~l~~~~~~-v~-~ly-~~~~~~~~P~L~fiG~~~~~~-~~~~~e~Qa~~ia~~~~ 114 (216)
.+++|.||+|+|+... ..++.. .++.+++.. +. .-+ ...+-.+.|++|.+|=..... ....+-.|++.+|+.+.
T Consensus 553 ~i~aD~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~ 631 (639)
T PRK12809 553 ELPADVLIMAFGFQAHAMPWLQG-SGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDML 631 (639)
T ss_pred EEECCEEEECcCCCCCccccccc-cCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4689999999999975 345542 344333221 10 000 111234679999999765432 23445556666655443
No 86
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=71.69 E-value=15 Score=34.76 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=51.2
Q ss_pred CcEEcC--CceEEecCc----EEE---cCCCEE--e--ccE----EEEcCCCCCCCCCCCCCCCeEecC-Cccc-ccccc
Q psy14914 18 NVVKKP--DIAELTPTG----VRF---QDGSYE--Q--VDI----ILYCTGYTYRYPFLHESCGIKVVN-KNVQ-PLYKH 78 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~----V~f---~dG~~~--~--~D~----II~aTGy~~~~pfl~~~~~l~~~~-~~v~-~ly~~ 78 (216)
+|+++. .|.++++++ +.+ .+|+.. + +|. ||+|+|+.+...++... +.+++ +++. .-+.
T Consensus 193 gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~--l~l~~~G~I~vd~~~- 269 (555)
T TIGR03143 193 KIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGV--VELDKRGYIPTNEDM- 269 (555)
T ss_pred CcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhh--cccCCCCeEEeCCcc-
Confidence 577753 488887643 233 467653 2 566 99999999887766532 22332 2221 1122
Q ss_pred cccCCCCCeEEEccCCCc--chhhHHHHHHHHHHHH
Q psy14914 79 LINIEHPSMCIIGIPGDT--VVFYMFDLQVRFFLQL 112 (216)
Q Consensus 79 ~~~~~~P~L~fiG~~~~~--~~~~~~e~Qa~~ia~~ 112 (216)
-.+.||+|.+|=.... .....+-.|++.+|.-
T Consensus 270 --~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~ 303 (555)
T TIGR03143 270 --ETNVPGVYAAGDLRPKELRQVVTAVADGAIAATS 303 (555)
T ss_pred --ccCCCCEEEceeccCCCcchheeHHhhHHHHHHH
Confidence 2367999999976421 1234455565555543
No 87
>KOG2755|consensus
Probab=71.24 E-value=4 Score=35.36 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=27.8
Q ss_pred CCceEEe--cCcEEEcCCCEEeccEEEEcCCCCCCC
Q psy14914 23 PDIAELT--PTGVRFQDGSYEQVDIILYCTGYTYRY 56 (216)
Q Consensus 23 ~~I~~~~--~~~V~f~dG~~~~~D~II~aTGy~~~~ 56 (216)
.++..++ ++-|+.++|..+..+-+.+||||++.+
T Consensus 71 ~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 71 NDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred HhhhhhccccceEEecCCceeeEEEEEEecCCCcce
Confidence 3455555 355999999999999999999999775
No 88
>KOG0405|consensus
Probab=69.61 E-value=21 Score=32.38 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=53.3
Q ss_pred EEEcCCCEEeccEEEEcCCCCCCCCCCC-CCCCeEecCCcc--cccccccccCCCCCeEEEccCCCc-chhhHHHHHHHH
Q psy14914 33 VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNV--QPLYKHLINIEHPSMCIIGIPGDT-VVFYMFDLQVRF 108 (216)
Q Consensus 33 V~f~dG~~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v--~~ly~~~~~~~~P~L~fiG~~~~~-~~~~~~e~Qa~~ 108 (216)
+..+.|+..++|.++||||=++..--|. +..|+.++.+.. ..-|+++ +.|+++-+|=...- .-.|.+=+.+|-
T Consensus 266 ~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T---nvp~I~avGDv~gk~~LTPVAiaagr~ 342 (478)
T KOG0405|consen 266 VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT---NVPSIWAVGDVTGKINLTPVAIAAGRK 342 (478)
T ss_pred EEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC---CCCceEEeccccCcEecchHHHhhhhh
Confidence 4445666668999999999987755444 235666554431 2445554 68999999977543 345777777888
Q ss_pred HHHHHhC
Q psy14914 109 FLQLMKG 115 (216)
Q Consensus 109 ia~~~~g 115 (216)
+|..+-|
T Consensus 343 la~rlF~ 349 (478)
T KOG0405|consen 343 LANRLFG 349 (478)
T ss_pred HHHHhhc
Confidence 8865544
No 89
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=69.36 E-value=7.7 Score=35.56 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=29.9
Q ss_pred CcEEcCCceEEe-cCcEEEcCCCEEeccEEEEcCCCCCCCC
Q psy14914 18 NVVKKPDIAELT-PTGVRFQDGSYEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 18 ~V~~~~~I~~~~-~~~V~f~dG~~~~~D~II~aTGy~~~~p 57 (216)
+|++.-.-.+|. .+.|...+|+++.+|.||+|||=++..|
T Consensus 106 gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p 146 (452)
T TIGR03452 106 NIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIP 146 (452)
T ss_pred CeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCC
Confidence 577765444554 4668888888889999999999876554
No 90
>PRK14694 putative mercuric reductase; Provisional
Probab=68.07 E-value=10 Score=34.89 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=28.9
Q ss_pred CcEEc-CCceEEecCc--EEEcCCC--EEeccEEEEcCCCCCCCCCC
Q psy14914 18 NVVKK-PDIAELTPTG--VRFQDGS--YEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 18 ~V~~~-~~I~~~~~~~--V~f~dG~--~~~~D~II~aTGy~~~~pfl 59 (216)
+|++. +.+..+++++ |.+.||+ ++.+|.||+|||-++..|-+
T Consensus 111 ~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i 157 (468)
T PRK14694 111 AITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPV 157 (468)
T ss_pred CeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCC
Confidence 45554 3466666554 5567774 57999999999988765543
No 91
>PRK06847 hypothetical protein; Provisional
Probab=67.73 E-value=8.6 Score=33.72 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=25.0
Q ss_pred CceEEec--C--cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 24 DIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 24 ~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.+.+++. + .|.+.||+++.+|.||.|+|....
T Consensus 129 ~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 129 TVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred EEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 4666653 2 367889999999999999998754
No 92
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=67.11 E-value=8.8 Score=35.07 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=34.6
Q ss_pred CcEEc-CCceEEec--CcEEEcCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK-PDIAELTP--TGVRFQDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~-~~I~~~~~--~~V~f~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|..+ ..+..|+. +.|.++|+..++.|..|+|+|....++-++
T Consensus 72 ~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~ 117 (405)
T COG1252 72 NVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIP 117 (405)
T ss_pred ceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCC
Confidence 36665 56888884 669999988899999999999998875444
No 93
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=67.03 E-value=9.6 Score=34.77 Aligned_cols=43 Identities=26% Similarity=0.207 Sum_probs=29.1
Q ss_pred CcEEc-CCceEEecCcEEE-cCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK-PDIAELTPTGVRF-QDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~-~~I~~~~~~~V~f-~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|++. ..+..++.+.+.. .+|+++.+|.||+|||-++..|-++
T Consensus 104 gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~ 148 (446)
T TIGR01424 104 GVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLP 148 (446)
T ss_pred CcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCC
Confidence 35554 3355566666544 4677789999999999887655443
No 94
>PTZ00058 glutathione reductase; Provisional
Probab=65.81 E-value=12 Score=35.64 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.2
Q ss_pred cCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 36 QDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 36 ~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
.||+++.+|.||.|||-++..|-++
T Consensus 196 ~~g~~i~ad~lVIATGS~P~~P~Ip 220 (561)
T PTZ00058 196 DDGQVIEGKNILIAVGNKPIFPDVK 220 (561)
T ss_pred CCCcEEECCEEEEecCCCCCCCCCC
Confidence 4677889999999999887666554
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=64.39 E-value=9.5 Score=34.73 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=27.2
Q ss_pred CcEEc--CCceEEecC--c--EEEcCCCEEeccEEEEcCCC
Q psy14914 18 NVVKK--PDIAELTPT--G--VRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~--~--V~f~dG~~~~~D~II~aTGy 52 (216)
+|+++ ..|.++..+ + +..++|+++.+|.+|+|||=
T Consensus 125 gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 125 GVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred CcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCC
Confidence 46775 458888754 2 66678888999999999994
No 96
>KOG1336|consensus
Probab=64.15 E-value=11 Score=35.12 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCceEEe--cCcEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 23 PDIAELT--PTGVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 23 ~~I~~~~--~~~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
..|.+++ .++|++.+|+.+..|.+|+|||....
T Consensus 148 t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336|consen 148 TSVVKADLASKTLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred ceeEEeeccccEEEeCCCceeecceEEEeecCccc
Confidence 4577776 57899999999999999999999543
No 97
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=63.78 E-value=15 Score=32.15 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=60.2
Q ss_pred cEEc--CCceEEecCc-------EEEcCCCEEeccEEEEcCCCCCCCCCCCCCC--CeEecCCcccccccccccCCCCCe
Q psy14914 19 VVKK--PDIAELTPTG-------VRFQDGSYEQVDIILYCTGYTYRYPFLHESC--GIKVVNKNVQPLYKHLINIEHPSM 87 (216)
Q Consensus 19 V~~~--~~I~~~~~~~-------V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~--~l~~~~~~v~~ly~~~~~~~~P~L 87 (216)
|+++ ..+.+++.+. +...+|..+++|.++.++|..+.. ++..+. ++...+.++ .....+.....++.
T Consensus 193 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~-~l~~~~~~~~~~~~g~i-~v~~~~~~~~~~~v 270 (415)
T COG0446 193 VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNV-VLANDALPGLALAGGAV-LVDERGGTSKDPDV 270 (415)
T ss_pred cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccH-HHHhhCccceeccCCCE-EEccccccCCCCCE
Confidence 5553 3577777543 688889999999999999999873 333222 233333344 33333322257777
Q ss_pred EEEccCCC-----------cchhhHHHHHHHHHHHHHhCC
Q psy14914 88 CIIGIPGD-----------TVVFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 88 ~fiG~~~~-----------~~~~~~~e~Qa~~ia~~~~g~ 116 (216)
+-+|-... ...+..+..|++.++....+.
T Consensus 271 ~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 271 YAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred EeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 77776321 124678888888888887764
No 98
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=63.17 E-value=14 Score=32.89 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=28.8
Q ss_pred CcEEc--CCceEEec--C--cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|+++ ..+.+++. + .|.|+||+++++|.||-|+|.+..
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 46664 24666652 3 478899999999999999999765
No 99
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=63.14 E-value=18 Score=36.29 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=30.5
Q ss_pred CcEEcC--CceEEec--CcEEEcCCCEEeccEEEEcCCCCCCCC
Q psy14914 18 NVVKKP--DIAELTP--TGVRFQDGSYEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~V~f~dG~~~~~D~II~aTGy~~~~p 57 (216)
+|+++. .+.+++. +.|...+|+++.+|.+|+|||-.+..|
T Consensus 73 gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 73 GIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred CCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCC
Confidence 577753 3777875 447788898899999999999875544
No 100
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=62.33 E-value=12 Score=34.16 Aligned_cols=39 Identities=26% Similarity=0.195 Sum_probs=24.8
Q ss_pred CcEEcCCceEEe-cCcEEEcCCCEEeccEEEEcCCCCCCCC
Q psy14914 18 NVVKKPDIAELT-PTGVRFQDGSYEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 18 ~V~~~~~I~~~~-~~~V~f~dG~~~~~D~II~aTGy~~~~p 57 (216)
+|+++..-.++. ++.|.. +|+.+.+|.||+|||=++..|
T Consensus 105 gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p 144 (450)
T TIGR01421 105 KVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFP 144 (450)
T ss_pred CCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCC
Confidence 355543323333 344544 677789999999999876655
No 101
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=62.20 E-value=15 Score=33.28 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=29.5
Q ss_pred CcEEc--CCceEEec--CcEEEcC---CCEEe--ccEEEEcCCCCCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--TGVRFQD---GSYEQ--VDIILYCTGYTYRYPFL 59 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~V~f~d---G~~~~--~D~II~aTGy~~~~pfl 59 (216)
+|++. ..+.+++. +.|.+.+ |+.++ +|.+|+|||-++..|-+
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i 120 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPI 120 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCC
Confidence 45553 35777763 5577765 66666 99999999998766543
No 102
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=62.11 E-value=23 Score=32.80 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=56.5
Q ss_pred CcEEcCCceEEec-CcEEEcC--CCEEeccEEEEcCCCCCCCC-CCCCCC-CeEecCCcccccccccccCCCC-CeEEEc
Q psy14914 18 NVVKKPDIAELTP-TGVRFQD--GSYEQVDIILYCTGYTYRYP-FLHESC-GIKVVNKNVQPLYKHLINIEHP-SMCIIG 91 (216)
Q Consensus 18 ~V~~~~~I~~~~~-~~V~f~d--G~~~~~D~II~aTGy~~~~p-fl~~~~-~l~~~~~~v~~ly~~~~~~~~P-~L~fiG 91 (216)
+|++.-.-.+|.+ ++|...+ .+++++|.||.|||=++..| ...-+. .+-.++.- .+....| +|.+||
T Consensus 108 ~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~-------l~~~~lP~~lvIiG 180 (454)
T COG1249 108 GVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDA-------LFLLELPKSLVIVG 180 (454)
T ss_pred CCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhh-------cccccCCCEEEEEC
Confidence 5677666666664 6666655 36789999999999997644 222111 01111111 1122566 799998
Q ss_pred cCCCcchhhHHHHHHHHHHH-----HH-hCCCCCCCH-HHHHHHHHHHHHH
Q psy14914 92 IPGDTVVFYMFDLQVRFFLQ-----LM-KGYVTLPSK-AEMLADTDQDIRA 135 (216)
Q Consensus 92 ~~~~~~~~~~~e~Qa~~ia~-----~~-~g~~~LPs~-~em~~~~~~~~~~ 135 (216)
.-.- .+|+...|... ++ .+..-||.. +++.+.+.+.++.
T Consensus 181 gG~I-----GlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~ 226 (454)
T COG1249 181 GGYI-----GLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEK 226 (454)
T ss_pred CCHH-----HHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHh
Confidence 7532 34654444331 01 122336733 4565666555443
No 103
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=61.59 E-value=13 Score=33.96 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=27.7
Q ss_pred CcEEcC-CceEEecCcEEEcCCC-EEeccEEEEcCCCCCCCCCC
Q psy14914 18 NVVKKP-DIAELTPTGVRFQDGS-YEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 18 ~V~~~~-~I~~~~~~~V~f~dG~-~~~~D~II~aTGy~~~~pfl 59 (216)
+|+++. .....+++.|...+|+ .+.+|.||+|||-++..|-+
T Consensus 102 gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i 145 (463)
T TIGR02053 102 GVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPI 145 (463)
T ss_pred CcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCC
Confidence 355543 2333445668887765 46899999999988765543
No 104
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=61.57 E-value=14 Score=32.75 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=29.7
Q ss_pred CcEEc--CCceEEecC-cEEEcCCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK--PDIAELTPT-GVRFQDGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~-~V~f~dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|+++ ..|.+++.. ..+..+|..+.+|.+|+|||-.+..|-++
T Consensus 72 gv~~~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~~~p~i~ 117 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIP 117 (377)
T ss_pred CCEEECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCCCCCCCC
Confidence 46665 247788753 23335787889999999999876555443
No 105
>PLN02463 lycopene beta cyclase
Probab=60.97 E-value=15 Score=33.79 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=28.2
Q ss_pred CcEEc-CCceEEec----CcEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK-PDIAELTP----TGVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~-~~I~~~~~----~~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|++. ..|.+++. ..|.++||+++.+|.||.|||.+..
T Consensus 128 GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 128 GVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred CCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 35553 34666653 2378899999999999999999765
No 106
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=60.94 E-value=12 Score=35.24 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=36.6
Q ss_pred EeccEEEEcCCCCCCC--CCCCCCCCeEecCCc-ccccccccccC--CCCCeEEEccCCCcchhhHHHHHHHHH
Q psy14914 41 EQVDIILYCTGYTYRY--PFLHESCGIKVVNKN-VQPLYKHLINI--EHPSMCIIGIPGDTVVFYMFDLQVRFF 109 (216)
Q Consensus 41 ~~~D~II~aTGy~~~~--pfl~~~~~l~~~~~~-v~~ly~~~~~~--~~P~L~fiG~~~~~~~~~~~e~Qa~~i 109 (216)
+++|.||++||+.++- .-+..-+||..++.+ +.+++-.+.+. ..+++|..|..+.+--.+-.-.||..+
T Consensus 463 ~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaqa~aA 536 (622)
T COG1148 463 IEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQAKAA 536 (622)
T ss_pred cccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHHHHHHhHHH
Confidence 4899999999998652 122222344333322 11222222222 356999999988753333333344433
No 107
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=59.46 E-value=12 Score=32.69 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=26.3
Q ss_pred CcEEcC--CceEEecCcEEEcCCCEEeccEEEEcCCCCC
Q psy14914 18 NVVKKP--DIAELTPTGVRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 18 ~V~~~~--~I~~~~~~~V~f~dG~~~~~D~II~aTGy~~ 54 (216)
.+++.. .|.+++.++|..++|+ +.+|.||+|||...
T Consensus 160 Gv~i~~~t~V~~i~~~~v~t~~g~-i~a~~VV~A~G~~s 197 (365)
T TIGR03364 160 GVEFHWNTAVTSVETGTVRTSRGD-VHADQVFVCPGADF 197 (365)
T ss_pred CCEEEeCCeEEEEecCeEEeCCCc-EEeCEEEECCCCCh
Confidence 355542 4777776678887775 57999999999854
No 108
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=58.99 E-value=15 Score=33.54 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=29.8
Q ss_pred CcEEc--CCceEEec--CcEEEcCC---C--EEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--TGVRFQDG---S--YEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~V~f~dG---~--~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|+++ ..+.+++. +.|.+.++ + ++.+|.+|+|||-++..|-++
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~ 123 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFE 123 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCC
Confidence 45553 56888874 45777664 2 247899999999988765443
No 109
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=57.87 E-value=19 Score=31.80 Aligned_cols=38 Identities=16% Similarity=0.386 Sum_probs=27.6
Q ss_pred CcEEc--CCceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
++++. ..+.+++. ++ |++.||+++.+|.||.|+|....
T Consensus 125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 35554 24666653 33 67789998999999999999754
No 110
>PRK13748 putative mercuric reductase; Provisional
Probab=57.37 E-value=20 Score=33.66 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=27.8
Q ss_pred CcEEc-CCceEEecCcEEE--cCCC--EEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK-PDIAELTPTGVRF--QDGS--YEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~-~~I~~~~~~~V~f--~dG~--~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|+++ +.+..++++.+.. .+|+ ++.+|.||+|||-++..|-++
T Consensus 203 ~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~ 250 (561)
T PRK13748 203 AITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIP 250 (561)
T ss_pred CeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC
Confidence 35553 3344455565444 5664 479999999999987665443
No 111
>PRK09126 hypothetical protein; Provisional
Probab=56.36 E-value=22 Score=31.33 Aligned_cols=38 Identities=5% Similarity=0.090 Sum_probs=27.6
Q ss_pred CcEEcC--CceEEec--C--cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKKP--DIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
++++.. .+.+++. + .|.++||+++.+|.||.|+|.+..
T Consensus 125 g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 125 GIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 455542 3666642 3 367889999999999999999765
No 112
>PRK06370 mercuric reductase; Validated
Probab=56.18 E-value=20 Score=32.80 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=21.4
Q ss_pred cCcEEEcCCCEEeccEEEEcCCCCCCCCCC
Q psy14914 30 PTGVRFQDGSYEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 30 ~~~V~f~dG~~~~~D~II~aTGy~~~~pfl 59 (216)
++.|.. +|+++.+|.||+|||=++..|-+
T Consensus 122 ~~~v~v-~~~~~~~d~lViATGs~p~~p~i 150 (463)
T PRK06370 122 PNTVRV-GGETLRAKRIFINTGARAAIPPI 150 (463)
T ss_pred CCEEEE-CcEEEEeCEEEEcCCCCCCCCCC
Confidence 345555 56678999999999987765543
No 113
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=56.15 E-value=21 Score=32.10 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=29.4
Q ss_pred CcEEc--CCceEEe--cCcEEEcC---CCEEe--ccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK--PDIAELT--PTGVRFQD---GSYEQ--VDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~--~~I~~~~--~~~V~f~d---G~~~~--~D~II~aTGy~~~~pfl~ 60 (216)
+|+++ ..+.+++ ++.|.+.+ |+++. +|.||+|||-++..|-++
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~ 109 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIE 109 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCC
Confidence 45553 3577776 45577754 34666 999999999987665443
No 114
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=55.77 E-value=6.8 Score=33.48 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=24.2
Q ss_pred cEEcC--CceEEe--cC---cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 19 VVKKP--DIAELT--PT---GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 19 V~~~~--~I~~~~--~~---~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
++++. .|.++. ++ +|..+||+ +.+|.||.|||+...
T Consensus 162 v~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 162 VEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp -EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred hhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence 55542 577776 23 37788887 999999999999654
No 115
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=55.25 E-value=17 Score=32.58 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=25.0
Q ss_pred CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 24 DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 24 ~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.+.+++. ++ |.|+||+++++|.||.|+|.+..
T Consensus 125 ~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 125 RATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred EEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4666652 33 78899999999999999998754
No 116
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=55.09 E-value=20 Score=35.34 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=31.8
Q ss_pred CCcEEcC--CceEEec--CcEEEcCCCEEeccEEEEcCCCCCCCCCCCC
Q psy14914 17 NNVVKKP--DIAELTP--TGVRFQDGSYEQVDIILYCTGYTYRYPFLHE 61 (216)
Q Consensus 17 ~~V~~~~--~I~~~~~--~~V~f~dG~~~~~D~II~aTGy~~~~pfl~~ 61 (216)
.+|++.+ .+..++. +.|+.++|..+..|-.|+||| ++||+.+
T Consensus 72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATG---S~pfi~P 117 (793)
T COG1251 72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATG---SYPFILP 117 (793)
T ss_pred cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecC---ccccccC
Confidence 3688864 4778875 446667788899999999999 4677754
No 117
>PRK07588 hypothetical protein; Provisional
Probab=54.18 E-value=23 Score=31.33 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=29.3
Q ss_pred CCcEEc--CCceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCCC
Q psy14914 17 NNVVKK--PDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRY 56 (216)
Q Consensus 17 ~~V~~~--~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~~ 56 (216)
.+++++ ..+.+++. ++ |.|+||+++++|.||-|.|-+...
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence 346664 24667753 33 678899999999999999987653
No 118
>PRK14727 putative mercuric reductase; Provisional
Probab=54.02 E-value=25 Score=32.49 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEcCCC--EEeccEEEEcCCCCCCCCCCC
Q psy14914 34 RFQDGS--YEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 34 ~f~dG~--~~~~D~II~aTGy~~~~pfl~ 60 (216)
...||+ ++.+|.||+|||-.+..|-++
T Consensus 140 ~~~~g~~~~~~~d~lViATGs~p~~p~i~ 168 (479)
T PRK14727 140 RLHDGGERVLAADRCLIATGSTPTIPPIP 168 (479)
T ss_pred EeCCCceEEEEeCEEEEecCCCCCCCCCC
Confidence 345775 478999999999887655443
No 119
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=53.95 E-value=22 Score=31.15 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=44.7
Q ss_pred CceEEecC----cEEEcCCCEEeccEEEEcCCCCCCCCCCCCCCCeEecCCccc--ccccccccCCCCCeEEEccCCCcc
Q psy14914 24 DIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ--PLYKHLINIEHPSMCIIGIPGDTV 97 (216)
Q Consensus 24 ~I~~~~~~----~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~--~ly~~~~~~~~P~L~fiG~~~~~~ 97 (216)
.+.+++.. .|..++|+ ..++.||.|||.....|-++.+. ...+..+. ..-.+ +..+. .+++||.-++.
T Consensus 82 ~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~--e~~g~gv~yc~~cdg-~~~~k-~v~ViGgG~sA- 155 (305)
T COG0492 82 EVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEE--EFEGKGVSYCATCDG-FFKGK-DVVVIGGGDSA- 155 (305)
T ss_pred EEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcch--hhcCCceEEeeecCc-cccCC-eEEEEcCCHHH-
Confidence 46666654 35666777 89999999999998876554211 11122221 11112 33333 78888877653
Q ss_pred hhhHHHHHHHHHHHHH
Q psy14914 98 VFYMFDLQVRFFLQLM 113 (216)
Q Consensus 98 ~~~~~e~Qa~~ia~~~ 113 (216)
--.|.+++.+-
T Consensus 156 -----ve~Al~L~~~a 166 (305)
T COG0492 156 -----VEEALYLSKIA 166 (305)
T ss_pred -----HHHHHHHHHhc
Confidence 22355555544
No 120
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=53.94 E-value=13 Score=33.66 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=31.6
Q ss_pred CCcEEcCCceEEe--cCcEEEcC--CCEEeccEEEEcCCCCCCCCCCC
Q psy14914 17 NNVVKKPDIAELT--PTGVRFQD--GSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 17 ~~V~~~~~I~~~~--~~~V~f~d--G~~~~~D~II~aTGy~~~~pfl~ 60 (216)
++|.....|.++. ++||++.+ |.+..+|.||.||==......|+
T Consensus 232 ~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~ 279 (447)
T COG2907 232 GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLD 279 (447)
T ss_pred ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcC
Confidence 4466666688887 58877766 88888999999996655544554
No 121
>PRK08163 salicylate hydroxylase; Provisional
Probab=52.55 E-value=28 Score=30.78 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=26.8
Q ss_pred cEEc--CCceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 19 VVKK--PDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 19 V~~~--~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
|++. ..+.+++. ++ |.+.||+++.+|.||.|+|....
T Consensus 125 v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 125 VEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred cEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 5554 24666653 33 56789988999999999998654
No 122
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=52.14 E-value=53 Score=30.36 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=35.1
Q ss_pred CCceEEec--Cc--EEEcCC--C--EEeccEEEEcCCCCCCCCCCCCCCCeE-ecCCccc-ccccccccCCCCCeEEEcc
Q psy14914 23 PDIAELTP--TG--VRFQDG--S--YEQVDIILYCTGYTYRYPFLHESCGIK-VVNKNVQ-PLYKHLINIEHPSMCIIGI 92 (216)
Q Consensus 23 ~~I~~~~~--~~--V~f~dG--~--~~~~D~II~aTGy~~~~pfl~~~~~l~-~~~~~v~-~ly~~~~~~~~P~L~fiG~ 92 (216)
..|.+++. +. |...++ . +..+|.||.|||-. +-|.++.--|+. +.+..++ .-|+..-.-...++.+||.
T Consensus 134 t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~-~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~ 212 (461)
T PLN02172 134 TEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHY-TEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGN 212 (461)
T ss_pred CEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCC-CCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECC
Confidence 45666663 22 444433 2 24689999999953 223332211221 1111111 1122211113458899998
Q ss_pred CCCc
Q psy14914 93 PGDT 96 (216)
Q Consensus 93 ~~~~ 96 (216)
..+.
T Consensus 213 G~Sg 216 (461)
T PLN02172 213 FASG 216 (461)
T ss_pred CcCH
Confidence 7654
No 123
>PRK09897 hypothetical protein; Provisional
Probab=52.04 E-value=17 Score=34.34 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=27.7
Q ss_pred CcEEcCCceEE--e---cCc-EEEcCCCEEeccEEEEcCCCCC----CCCCCC
Q psy14914 18 NVVKKPDIAEL--T---PTG-VRFQDGSYEQVDIILYCTGYTY----RYPFLH 60 (216)
Q Consensus 18 ~V~~~~~I~~~--~---~~~-V~f~dG~~~~~D~II~aTGy~~----~~pfl~ 60 (216)
.++++..++.+ + +.. +.++| ....+|+||=|||++. ++||-+
T Consensus 406 ~L~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~a~G~~~~~~~~~pf~~ 457 (534)
T PRK09897 406 IIHILALGEDYEMEINESRTVIKTED-NSYSFDVFIDARGQRPLKVKDIPFPG 457 (534)
T ss_pred CEEEEecCccceeEecCCeEEEEeCC-CceEeCEEEECCCCCCCccccCCchH
Confidence 46666544433 2 233 55555 4778999999999986 478754
No 124
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=51.99 E-value=12 Score=32.57 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=25.9
Q ss_pred cEEcCCceEEec--C--cEEEcCCCEEeccEEEEcCCCCC
Q psy14914 19 VVKKPDIAELTP--T--GVRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 19 V~~~~~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy~~ 54 (216)
|+....|++|+. + .|++.||+++.+|.||+|+....
T Consensus 226 i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 226 IRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp EESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred eecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence 444456777763 2 37889999999999999999854
No 125
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=51.70 E-value=22 Score=32.38 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=23.0
Q ss_pred CcEEc--CCceEEe--cCc---EEEcCCCEEeccEEEEcCCCCCCCCC
Q psy14914 18 NVVKK--PDIAELT--PTG---VRFQDGSYEQVDIILYCTGYTYRYPF 58 (216)
Q Consensus 18 ~V~~~--~~I~~~~--~~~---V~f~dG~~~~~D~II~aTGy~~~~pf 58 (216)
+|+++ ..|..+. +++ |.++++.++.+|.||+|||=.. +|-
T Consensus 123 gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S-~p~ 169 (409)
T PF03486_consen 123 GVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS-YPK 169 (409)
T ss_dssp T-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS-SGG
T ss_pred CCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC-ccc
Confidence 35665 3577774 444 6666777889999999999753 443
No 126
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=51.33 E-value=30 Score=30.66 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=27.1
Q ss_pred CcEEc--CCceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|++. ..+.++.. ++ |.++||+++.+|.||.|+|....
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 35553 24666653 22 67788988999999999999764
No 127
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=50.82 E-value=29 Score=30.25 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=27.2
Q ss_pred cEEcC--CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 19 VVKKP--DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 19 V~~~~--~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+++.. .+++++. ++ |.++||+++++|.||.|+|....
T Consensus 122 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 122 VTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred cEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 55543 4666652 33 67789998999999999998754
No 128
>PLN02507 glutathione reductase
Probab=50.13 E-value=30 Score=32.24 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=28.3
Q ss_pred CcEEc-CCceEEecCcE--EEcCCCE--EeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK-PDIAELTPTGV--RFQDGSY--EQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~-~~I~~~~~~~V--~f~dG~~--~~~D~II~aTGy~~~~pfl~ 60 (216)
+|+++ +..+.++++++ ...||++ +.+|.||+|||=++..|-++
T Consensus 138 gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~ip 185 (499)
T PLN02507 138 GVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIP 185 (499)
T ss_pred CcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCCCC
Confidence 45554 33555666654 4457764 58899999999876655443
No 129
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=49.79 E-value=28 Score=32.36 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=28.4
Q ss_pred CcEEcCCceEEec-CcEEEcC--------CCEEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKKPDIAELTP-TGVRFQD--------GSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~~~I~~~~~-~~V~f~d--------G~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|++...-.+|.+ ++|...+ ++.+.+|.||+|||-++..|-++
T Consensus 118 gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p~~p~i~ 169 (486)
T TIGR01423 118 GLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIP 169 (486)
T ss_pred CeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCCCCCCCCC
Confidence 5666655556654 4465542 23579999999999987655443
No 130
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=49.78 E-value=27 Score=33.92 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=27.3
Q ss_pred cEEcCCceEEe-cCcEEE-cCCCEEeccEEEEcCCCCCCCC
Q psy14914 19 VVKKPDIAELT-PTGVRF-QDGSYEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 19 V~~~~~I~~~~-~~~V~f-~dG~~~~~D~II~aTGy~~~~p 57 (216)
|++...-.+|. +++|.. .+|+++.+|.||+|||-++..|
T Consensus 249 v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P 289 (659)
T PTZ00153 249 VQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIP 289 (659)
T ss_pred eEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCC
Confidence 55555555664 355554 3677789999999999987655
No 131
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=49.77 E-value=30 Score=31.35 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=28.6
Q ss_pred CcEEc-CCceEEecCcEE--EcCCC-EEeccEEEEcCCCCCCCCCCC
Q psy14914 18 NVVKK-PDIAELTPTGVR--FQDGS-YEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 18 ~V~~~-~~I~~~~~~~V~--f~dG~-~~~~D~II~aTGy~~~~pfl~ 60 (216)
+|++. +.+..++.+.+. ..||. ++.+|.||+|||=.+..|-++
T Consensus 91 gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~ 137 (441)
T PRK08010 91 NIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIP 137 (441)
T ss_pred CcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCC
Confidence 45554 345556665543 45775 579999999999887655443
No 132
>PRK07045 putative monooxygenase; Reviewed
Probab=49.76 E-value=27 Score=30.84 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=27.8
Q ss_pred CcEEc--CCceEEec--C----cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--T----GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~----~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
++++. -.++.++. + +|.++||+++.+|.||-|+|-+..
T Consensus 121 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 121 NVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred CeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 45554 24666653 2 478889999999999999999753
No 133
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=49.64 E-value=34 Score=30.22 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=27.6
Q ss_pred CcEEc--CCceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|++. ..+.++.. ++ |.+.||+++.+|.||.|+|....
T Consensus 127 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred CcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 45654 24666642 32 67789988999999999999765
No 134
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=49.35 E-value=29 Score=30.88 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=27.8
Q ss_pred CcEEcC--CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKKP--DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
++++.. .+.+++. ++ |.+.||+++.+|.||-|+|-...
T Consensus 126 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 126 DIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 355542 4666653 33 67889988999999999998754
No 135
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=49.14 E-value=32 Score=30.12 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=28.4
Q ss_pred CcEEc--CCceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
++++. ..+.+++. ++ |.++||+++.+|.||-|.|....
T Consensus 120 gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 120 NIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 56665 34777753 33 67789988999999999998753
No 136
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=48.88 E-value=32 Score=30.32 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.3
Q ss_pred EEEcCCCEEeccEEEEcCCCCC
Q psy14914 33 VRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 33 V~f~dG~~~~~D~II~aTGy~~ 54 (216)
|.+.||+++.+|.||.|||...
T Consensus 120 v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 120 VYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEeCCCCEEEeCEEEECCCCch
Confidence 6677888899999999999875
No 137
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=48.61 E-value=26 Score=30.99 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCceEEe--cCc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 23 PDIAELT--PTG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 23 ~~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
..|.+++ +++ |...+|+.+.+|.||+|||....
T Consensus 155 ~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 155 TEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred CEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 3456664 233 56678887899999999998643
No 138
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=47.89 E-value=35 Score=31.69 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=27.3
Q ss_pred CcEEcCCceEEe-cCcEEEc--CCC--EEeccEEEEcCCCCCCCCCC
Q psy14914 18 NVVKKPDIAELT-PTGVRFQ--DGS--YEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 18 ~V~~~~~I~~~~-~~~V~f~--dG~--~~~~D~II~aTGy~~~~pfl 59 (216)
+|++...-.+|. +++|... +|+ ++.+|.||+|||-++..|-+
T Consensus 114 ~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~i 160 (484)
T TIGR01438 114 KVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGI 160 (484)
T ss_pred CcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCC
Confidence 455554444554 3556664 443 57999999999998765544
No 139
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=46.89 E-value=28 Score=31.53 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=26.4
Q ss_pred CcEEcCCceEEec--C--cEEEcCCCEEeccEEEEcCCCCC
Q psy14914 18 NVVKKPDIAELTP--T--GVRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 18 ~V~~~~~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy~~ 54 (216)
+|.....|.+|+. + .|.+.||+++++|.||+||--..
T Consensus 239 ~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 279 (462)
T TIGR00562 239 KVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKA 279 (462)
T ss_pred eEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHH
Confidence 3444456788863 3 36677888889999999998643
No 140
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=46.36 E-value=24 Score=32.42 Aligned_cols=38 Identities=18% Similarity=0.051 Sum_probs=25.4
Q ss_pred CcEEc-CCceEEecC-------c--EEEcCC--CEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK-PDIAELTPT-------G--VRFQDG--SYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~-~~I~~~~~~-------~--V~f~dG--~~~~~D~II~aTGy~~~ 55 (216)
+|++. +..+.++++ + |...|| +++.+|.||+|||=++.
T Consensus 106 gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 106 KIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred CCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 45554 334555555 4 445677 35799999999998764
No 141
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=45.88 E-value=52 Score=28.75 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=47.8
Q ss_pred CcEEc--CCceEEec---CcEEEcCC--C--EEeccEEEEcCCCCCCCCCCCCCCCeEecCCcccccccccccCCCCCeE
Q psy14914 18 NVVKK--PDIAELTP---TGVRFQDG--S--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMC 88 (216)
Q Consensus 18 ~V~~~--~~I~~~~~---~~V~f~dG--~--~~~~D~II~aTGy~~~~pfl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~ 88 (216)
+|.++ ..|+++.+ ++|++.++ + .+.+|-|..+.|+.+...|+.. .++..+++.+ -. ..-+-.+.|++|
T Consensus 193 ~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~-~~~~~~~g~I-~v-~~~~~TsvpGif 269 (305)
T COG0492 193 KIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKG-LGVLDENGYI-VV-DEEMETSVPGIF 269 (305)
T ss_pred CeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhh-ccccCCCCcE-Ec-CCCcccCCCCEE
Confidence 56664 36999998 57899874 3 3589999999999998766643 1121111221 00 011346788999
Q ss_pred EEccCCC
Q psy14914 89 IIGIPGD 95 (216)
Q Consensus 89 fiG~~~~ 95 (216)
-+|=...
T Consensus 270 AaGDv~~ 276 (305)
T COG0492 270 AAGDVAD 276 (305)
T ss_pred EeEeecc
Confidence 9886654
No 142
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=45.61 E-value=33 Score=31.03 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=21.1
Q ss_pred cCcEEEcCC---CEEeccEEEEcCCCCCCCCCC
Q psy14914 30 PTGVRFQDG---SYEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 30 ~~~V~f~dG---~~~~~D~II~aTGy~~~~pfl 59 (216)
++.|...++ ..+.+|.||+|||-++..|-+
T Consensus 103 ~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i 135 (438)
T PRK07251 103 NKVIEVQAGDEKIELTAETIVINTGAVSNVLPI 135 (438)
T ss_pred CCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCC
Confidence 455766542 347999999999998765433
No 143
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=45.19 E-value=38 Score=31.14 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=21.0
Q ss_pred cCcEEEc--CCCEEeccEEEEcCCCCCC-CCCC
Q psy14914 30 PTGVRFQ--DGSYEQVDIILYCTGYTYR-YPFL 59 (216)
Q Consensus 30 ~~~V~f~--dG~~~~~D~II~aTGy~~~-~pfl 59 (216)
+..|... +|+++.+|.||+|||-.+. .|.+
T Consensus 131 ~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~ 163 (475)
T PRK06327 131 GYEIKVTGEDETVITAKHVIIATGSEPRHLPGV 163 (475)
T ss_pred CCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC
Confidence 4556664 3457899999999998764 3443
No 144
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=45.06 E-value=41 Score=29.92 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=29.7
Q ss_pred CcEEc--CCceEEecCc----EEEc-CCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTPTG----VRFQ-DGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~~----V~f~-dG~~~~~D~II~aTGy~~~ 55 (216)
+|++. ..|+.++.++ |+++ ||+++++|.||-|-|.+..
T Consensus 119 ~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 119 NVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred CcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence 46775 3588887443 8888 9999999999999998653
No 145
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=44.59 E-value=42 Score=31.29 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=28.9
Q ss_pred CcEEc--CCceEEecC----cEEEcCCCEEeccEEEEcCCCCCCCCCC
Q psy14914 18 NVVKK--PDIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~----~V~f~dG~~~~~D~II~aTGy~~~~pfl 59 (216)
+|.++ ..|.+++.. .|.+.+|+.+.+|.||+|||-.+..|-+
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~i 328 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGV 328 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCC
Confidence 35554 246666532 3667788889999999999987654433
No 146
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.31 E-value=35 Score=31.39 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=26.4
Q ss_pred CcEEcCC-ceEEecCcEEEc--CCC--EEeccEEEEcCCCCCC-CCCCC
Q psy14914 18 NVVKKPD-IAELTPTGVRFQ--DGS--YEQVDIILYCTGYTYR-YPFLH 60 (216)
Q Consensus 18 ~V~~~~~-I~~~~~~~V~f~--dG~--~~~~D~II~aTGy~~~-~pfl~ 60 (216)
+|++... ...+++++|... ||+ ++.+|.||+|||-++. .|.++
T Consensus 107 gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 155 (471)
T PRK06467 107 KVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIP 155 (471)
T ss_pred CCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence 4555433 333345565553 563 5689999999998764 45443
No 147
>PRK05868 hypothetical protein; Validated
Probab=44.28 E-value=24 Score=31.29 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.7
Q ss_pred CCcEEcC--CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 17 NNVVKKP--DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 17 ~~V~~~~--~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.+++++- .|+.++. ++ |.|+||+++++|.||-|.|.+..
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 3455542 3666653 33 67899999999999999999865
No 148
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=44.09 E-value=34 Score=31.40 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=25.1
Q ss_pred CcEEcCC-ceE----EecCcEE--EcCCC--EEeccEEEEcCCCCCC
Q psy14914 18 NVVKKPD-IAE----LTPTGVR--FQDGS--YEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~~~-I~~----~~~~~V~--f~dG~--~~~~D~II~aTGy~~~ 55 (216)
+|++... .+. ++++++. ..||+ ++.+|.||+|||-++.
T Consensus 106 gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 106 GVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred CCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 4566433 333 3445544 45776 5799999999999875
No 149
>PRK06753 hypothetical protein; Provisional
Probab=44.02 E-value=23 Score=31.00 Aligned_cols=32 Identities=19% Similarity=0.459 Sum_probs=24.8
Q ss_pred CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 24 DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 24 ~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.+.+++. ++ |.|+||+++.+|.||-|.|.+..
T Consensus 118 ~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 118 EVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred EEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 4666643 32 67889999999999999998754
No 150
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=43.88 E-value=55 Score=30.52 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=28.8
Q ss_pred cEEcC--CceEEecC----cEEEcCCCEEeccEEEEcCCCCCCCCCC
Q psy14914 19 VVKKP--DIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 19 V~~~~--~I~~~~~~----~V~f~dG~~~~~D~II~aTGy~~~~pfl 59 (216)
++++. .+..++.. .|.+.+|+.+.+|.||+|||-.+..+-+
T Consensus 281 v~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~i 327 (517)
T PRK15317 281 VDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNV 327 (517)
T ss_pred CEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCC
Confidence 55542 46666542 3667888889999999999997655433
No 151
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=43.85 E-value=19 Score=30.78 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=21.0
Q ss_pred CceEEec--Cc---EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 24 DIAELTP--TG---VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 24 ~I~~~~~--~~---V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.|..+.. +. |...+| ++.+|.||+|||....
T Consensus 159 ~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 159 EVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred eEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 4666652 32 344455 7899999999998654
No 152
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=43.84 E-value=32 Score=31.33 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.1
Q ss_pred ecCcEEEcCCCEEeccEEEEcCCCC
Q psy14914 29 TPTGVRFQDGSYEQVDIILYCTGYT 53 (216)
Q Consensus 29 ~~~~V~f~dG~~~~~D~II~aTGy~ 53 (216)
+++.|.. +|+++.+|.||+|||-.
T Consensus 118 ~~~~v~v-~~~~~~~d~lIiATGs~ 141 (460)
T PRK06292 118 DPNTVEV-NGERIEAKNIVIATGSR 141 (460)
T ss_pred cCCEEEE-CcEEEEeCEEEEeCCCC
Confidence 3455555 77778999999999998
No 153
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=43.20 E-value=39 Score=30.09 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=27.5
Q ss_pred cCCceEEecCc----EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 22 KPDIAELTPTG----VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 22 ~~~I~~~~~~~----V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
...|++++.++ |+++||+++.++.||=|+|....
T Consensus 106 ~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 106 NARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred ccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 35688887543 58899999999999999998654
No 154
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=42.90 E-value=41 Score=30.61 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=25.1
Q ss_pred CcEEcC-CceEEecCcEE--EcCCC--EEeccEEEEcCCCCCCCC
Q psy14914 18 NVVKKP-DIAELTPTGVR--FQDGS--YEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 18 ~V~~~~-~I~~~~~~~V~--f~dG~--~~~~D~II~aTGy~~~~p 57 (216)
+|+++. ....++.+++. ..||+ ++.+|.||+|||-.+..|
T Consensus 108 ~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 108 RVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred CCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 355542 34445555543 35675 578999999999775543
No 155
>KOG1346|consensus
Probab=42.78 E-value=31 Score=32.05 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=32.5
Q ss_pred cEE-cC-CceEEec--CcEEEcCCCEEeccEEEEcCCCCCC-CCCCC
Q psy14914 19 VVK-KP-DIAELTP--TGVRFQDGSYEQVDIILYCTGYTYR-YPFLH 60 (216)
Q Consensus 19 V~~-~~-~I~~~~~--~~V~f~dG~~~~~D~II~aTGy~~~-~pfl~ 60 (216)
|-+ ++ .+.+++. +-|.+.||+++..|-.+.|||=.+. .+.+.
T Consensus 272 vAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~ 318 (659)
T KOG1346|consen 272 VAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFE 318 (659)
T ss_pred eEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhh
Confidence 555 34 4788874 5699999999999999999999875 45443
No 156
>PLN02612 phytoene desaturase
Probab=42.64 E-value=41 Score=31.92 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=26.1
Q ss_pred CcEEcCCceEEe--cCc----EEEcCCCEEeccEEEEcCCC
Q psy14914 18 NVVKKPDIAELT--PTG----VRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 18 ~V~~~~~I~~~~--~~~----V~f~dG~~~~~D~II~aTGy 52 (216)
+|.....|++|+ +++ |.+.+|+.+++|.||+||.-
T Consensus 324 ~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 324 EVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred EEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 355556688886 334 66789988999999999864
No 157
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=42.49 E-value=8.1 Score=30.42 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=18.1
Q ss_pred CCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 37 DGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 37 dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
++.++.+|.||+|||-.+..|.++
T Consensus 105 ~~~~~~~d~lviAtG~~~~~~~i~ 128 (201)
T PF07992_consen 105 DGREIKYDYLVIATGSRPRTPNIP 128 (201)
T ss_dssp TEEEEEEEEEEEESTEEEEEESST
T ss_pred CceEecCCeeeecCccccceeecC
Confidence 455679999999999776655554
No 158
>KOG1346|consensus
Probab=42.43 E-value=23 Score=32.84 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=30.3
Q ss_pred CcEEcCC--ceEEe---cCc-EEEcCCCEEeccEEEEcCCCCCCCCC
Q psy14914 18 NVVKKPD--IAELT---PTG-VRFQDGSYEQVDIILYCTGYTYRYPF 58 (216)
Q Consensus 18 ~V~~~~~--I~~~~---~~~-V~f~dG~~~~~D~II~aTGy~~~~pf 58 (216)
.|.|+|. |+++. .+- +.++||+++..|.||.|||-.+.-..
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhh
Confidence 4677763 55443 232 57889999999999999999887543
No 159
>KOG1399|consensus
Probab=42.24 E-value=97 Score=28.73 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=35.4
Q ss_pred EEEcCCC----EEeccEEEEcCCCCCCCCCCCCCCCe---EecCCccc-ccccccccCCCCCeEEEccCCCc
Q psy14914 33 VRFQDGS----YEQVDIILYCTGYTYRYPFLHESCGI---KVVNKNVQ-PLYKHLINIEHPSMCIIGIPGDT 96 (216)
Q Consensus 33 V~f~dG~----~~~~D~II~aTGy~~~~pfl~~~~~l---~~~~~~v~-~ly~~~~~~~~P~L~fiG~~~~~ 96 (216)
|...++. ..-+|+||.|||-. ..|-++...+. .+.+.-++ ..|+.-=.-..-....||..+++
T Consensus 128 V~~~~~~~~~~~~ifd~VvVctGh~-~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG 198 (448)
T KOG1399|consen 128 VTTKDNGTQIEEEIFDAVVVCTGHY-VEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSG 198 (448)
T ss_pred EEEecCCcceeEEEeeEEEEcccCc-CCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccH
Confidence 6665553 34699999999988 55655543221 12222221 23442111123588899998876
No 160
>PRK07236 hypothetical protein; Provisional
Probab=41.97 E-value=34 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.4
Q ss_pred CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 24 DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 24 ~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.+.+++. ++ |+|+||+++.+|.||.|-|-+..
T Consensus 120 ~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 120 TLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred EEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 4677753 33 78899999999999999998654
No 161
>PLN02852 ferredoxin-NADP+ reductase
Probab=41.76 E-value=3e+02 Score=25.80 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=58.6
Q ss_pred EeccEEEEcCCCCC----CCCCCCCCCCeEecC-CcccccccccccCCCCCeEEEccCCCc------chhhHHHHHHHHH
Q psy14914 41 EQVDIILYCTGYTY----RYPFLHESCGIKVVN-KNVQPLYKHLINIEHPSMCIIGIPGDT------VVFYMFDLQVRFF 109 (216)
Q Consensus 41 ~~~D~II~aTGy~~----~~pfl~~~~~l~~~~-~~v~~ly~~~~~~~~P~L~fiG~~~~~------~~~~~~e~Qa~~i 109 (216)
+++|.||.|.||+. .+||-. ..++..++ +++. -........|++|..|-...+ .++..+..-+.-+
T Consensus 341 i~~D~Vi~aIG~~~~p~~~l~f~~-~~gv~~n~~G~V~--~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i 417 (491)
T PLN02852 341 LPCGLVLKSIGYKSLPVDGLPFDH-KRGVVPNVHGRVL--SSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASI 417 (491)
T ss_pred EECCEEEEeecCCCCCCCCCcccc-CcCeeECCCceEE--eCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHH
Confidence 68999999999973 234432 22333332 2221 000112457999999987642 1345555555555
Q ss_pred HHHHhC-CCCCCC--HHHHHHHHHHHHHHHHhcCCCCceeeccccHHHHHHHHHHHhcCC
Q psy14914 110 LQLMKG-YVTLPS--KAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGE 166 (216)
Q Consensus 110 a~~~~g-~~~LPs--~~em~~~~~~~~~~~~~~~~~r~~h~~~~~~~~Y~d~L~~~~~g~ 166 (216)
...+.. +..-|. ...-.+.+.+.+.. + ..+....+.|.-.|.--... |.
T Consensus 418 ~~d~~~~~~~~~~~~~~~~~~~~~~~l~~---r----~~~~v~~~~W~~id~~E~~~-g~ 469 (491)
T PLN02852 418 AEDLEQGRLRGVASPPKPGRDGLLELLES---R----GVRVVPFSGWEKIDSAEKEA-GR 469 (491)
T ss_pred HHHHHcCcccCcccCCCCcHHHHHHHHHH---c----CCCeeCHHHHHHHHHHHHHh-cc
Confidence 555553 222110 00111123322222 2 12224567888888888777 75
No 162
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=41.63 E-value=33 Score=31.48 Aligned_cols=36 Identities=25% Similarity=0.110 Sum_probs=23.3
Q ss_pred cEEcCCceEEec-CcEE--EcCCC--EEeccEEEEcCCCCC
Q psy14914 19 VVKKPDIAELTP-TGVR--FQDGS--YEQVDIILYCTGYTY 54 (216)
Q Consensus 19 V~~~~~I~~~~~-~~V~--f~dG~--~~~~D~II~aTGy~~ 54 (216)
|++...-.+|++ +++. ..||+ ++.+|.||+|||=++
T Consensus 108 v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 108 VDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred CEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCC
Confidence 444433345554 3443 35775 479999999999876
No 163
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=40.79 E-value=21 Score=32.95 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=24.6
Q ss_pred CcEEc-CCceEEe--cC----cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK-PDIAELT--PT----GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~-~~I~~~~--~~----~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.|+++ +.|..+. ++ +|+..||+++++|.+|=|||++.-
T Consensus 168 Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 168 GVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp T-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred CCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 35554 3454442 33 477889999999999999999654
No 164
>KOG0404|consensus
Probab=40.32 E-value=23 Score=30.21 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=43.5
Q ss_pred ceEEecCc---EEEcCCCEEeccEEEEcCCCCCCCCCCCCC-CCeEec---------CCcccccccccccCCCCCeEEEc
Q psy14914 25 IAELTPTG---VRFQDGSYEQVDIILYCTGYTYRYPFLHES-CGIKVV---------NKNVQPLYKHLINIEHPSMCIIG 91 (216)
Q Consensus 25 I~~~~~~~---V~f~dG~~~~~D~II~aTGy~~~~pfl~~~-~~l~~~---------~~~v~~ly~~~~~~~~P~L~fiG 91 (216)
|.+++-.+ .++.|-+.+.+|+||+|||=...=-+|+.+ -+..++ +.- .|+|++- -|+.||
T Consensus 92 Vskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGa-apifrnk------~laVIG 164 (322)
T KOG0404|consen 92 VSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGA-APIFRNK------PLAVIG 164 (322)
T ss_pred hhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCc-chhhcCC------eeEEEc
Confidence 55554222 566777788999999999986542233322 111111 111 2455443 478888
Q ss_pred cCCCcchhhHHHHHHHHHHHHHhC
Q psy14914 92 IPGDTVVFYMFDLQVRFFLQLMKG 115 (216)
Q Consensus 92 ~~~~~~~~~~~e~Qa~~ia~~~~g 115 (216)
.-.+. -..|.++.++-+.
T Consensus 165 GGDsA------~EEA~fLtkyask 182 (322)
T KOG0404|consen 165 GGDSA------MEEALFLTKYASK 182 (322)
T ss_pred CcHHH------HHHHHHHHhhccE
Confidence 76542 3346677766543
No 165
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=40.19 E-value=27 Score=33.77 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.1
Q ss_pred cEEEcCCCEEeccEEEEcCCCCC
Q psy14914 32 GVRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 32 ~V~f~dG~~~~~D~II~aTGy~~ 54 (216)
+|...+|..+.+|.||.|||-..
T Consensus 132 GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 132 GVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred EEEECCCCEEECCEEEEccCccc
Confidence 57888998899999999999863
No 166
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=39.76 E-value=29 Score=30.96 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=28.1
Q ss_pred CCCCCcEEcCCceEEecCcEEEcCCC--------EEeccEEEEcCCCCCCCC
Q psy14914 14 RFPNNVVKKPDIAELTPTGVRFQDGS--------YEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 14 ~~p~~V~~~~~I~~~~~~~V~f~dG~--------~~~~D~II~aTGy~~~~p 57 (216)
.|+..|+...+--.+.++.|.+.+.. ...+|.|++|||-..+-.
T Consensus 54 ~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~~W~~~gvDiV~e~tG~f~s~~ 105 (337)
T PRK07403 54 KLNADISADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKE 105 (337)
T ss_pred CCCCcEEEcCCEEEECCEEEEEEEcCCcccCChhhcCCCEEEeccchhhhHH
Confidence 35666766655556666666554422 236999999999865543
No 167
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=39.71 E-value=40 Score=30.19 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=26.5
Q ss_pred CcEEcCCceEEe--cCc--EEEcCCCEEeccEEEEcCCCC
Q psy14914 18 NVVKKPDIAELT--PTG--VRFQDGSYEQVDIILYCTGYT 53 (216)
Q Consensus 18 ~V~~~~~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy~ 53 (216)
+|.....|++|+ +++ |.+.||+++.+|.||+|+--.
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence 355555678876 334 467899999999999998753
No 168
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=39.09 E-value=27 Score=33.78 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=24.6
Q ss_pred CcEEc-CCceEEe--c---CcEEEcCCCEEeccEEEEcCC
Q psy14914 18 NVVKK-PDIAELT--P---TGVRFQDGSYEQVDIILYCTG 51 (216)
Q Consensus 18 ~V~~~-~~I~~~~--~---~~V~f~dG~~~~~D~II~aTG 51 (216)
++++. ..+..+. + .+|+..+|..+.++.||.|||
T Consensus 115 nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATG 154 (618)
T PRK05192 115 NLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTG 154 (618)
T ss_pred CcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeC
Confidence 45553 3355543 2 247888999999999999999
No 169
>PTZ00052 thioredoxin reductase; Provisional
Probab=38.17 E-value=45 Score=31.03 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=20.8
Q ss_pred cCcEEEcC---CCEEeccEEEEcCCCCCCCC
Q psy14914 30 PTGVRFQD---GSYEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 30 ~~~V~f~d---G~~~~~D~II~aTGy~~~~p 57 (216)
+++|.+.+ +..+.+|.||+|||=.+..|
T Consensus 129 ~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p 159 (499)
T PTZ00052 129 EHTVSYGDNSQEETITAKYILIATGGRPSIP 159 (499)
T ss_pred CCEEEEeeCCCceEEECCEEEEecCCCCCCC
Confidence 45576643 23579999999999987765
No 170
>PF03199 GSH_synthase: Eukaryotic glutathione synthase; InterPro: IPR004887 This entry represents the substrate-binding domain of glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase []. In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. The substrate-binding domain has a 3-layer alpha/beta/alpha structure [].; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 3KAJ_A 3KAL_A 3KAK_A 2WYO_A 2HGS_A 1M0W_B 1M0T_A.
Probab=37.81 E-value=36 Score=25.02 Aligned_cols=29 Identities=31% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEecCcEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 27 ELTPTGVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 27 ~~~~~~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
++++++..+.+|+..++.+|=|-|||.++
T Consensus 47 ~~~~~~~l~~~~~~~eVsVVYfRaGY~P~ 75 (105)
T PF03199_consen 47 KLDPDKRLFVDGTGQEVSVVYFRAGYTPD 75 (105)
T ss_dssp EEETTS-EEETTTTEEEEEEEECS-SSGG
T ss_pred EECCCCCcccCCccEEEEEEEEecCcChh
Confidence 44455555667878899999999999875
No 171
>PRK08013 oxidoreductase; Provisional
Probab=37.79 E-value=57 Score=29.06 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=27.8
Q ss_pred CcEEcC--CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKKP--DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~~--~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|++.. .+.+++. ++ |.|.||+++.+|.||-|.|-+..
T Consensus 126 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 126 DITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred CcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 466642 4666643 33 67889999999999999998754
No 172
>PTZ00188 adrenodoxin reductase; Provisional
Probab=37.06 E-value=2.8e+02 Score=26.21 Aligned_cols=103 Identities=11% Similarity=0.190 Sum_probs=54.1
Q ss_pred EeccEEEEcCCCCCC----CCCCCCCCCeEecCCcccccccccccCCCCCeEEEccCCCc--c----hhhHHHHHHHHHH
Q psy14914 41 EQVDIILYCTGYTYR----YPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDT--V----VFYMFDLQVRFFL 110 (216)
Q Consensus 41 ~~~D~II~aTGy~~~----~pfl~~~~~l~~~~~~v~~ly~~~~~~~~P~L~fiG~~~~~--~----~~~~~e~Qa~~ia 110 (216)
+++|.||.|+||+.. .|| +.. +...+.++. ...|++|..|....+ + +...+..-+.-+.
T Consensus 368 ~~~~lV~rsiGY~g~p~~g~pF-d~~--~~n~~grv~--------~~~~g~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~ 436 (506)
T PTZ00188 368 LVTPLVIFATGFKKSNFAENLY-NQS--VQMFKEDIG--------QHKFAIFKAGWFDKGPKGNIASQILNSKNSTHLVL 436 (506)
T ss_pred EEcCEEEEcccccCCCCCCCCc-ccc--CCCCCCccc--------CCCCCcEEeeecCcCCCceeccCcccHHHHHHHHH
Confidence 589999999999865 333 111 111112221 136899999998643 2 2233333344444
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHhcCCCCceeeccccHHHHHHHHHHHhcCCC
Q psy14914 111 QLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGES 167 (216)
Q Consensus 111 ~~~~g~~~LPs~~em~~~~~~~~~~~~~~~~~r~~h~~~~~~~~Y~d~L~~~~~g~~ 167 (216)
..++... +.... .+.+.++. + ..+....+.|...|..-... |..
T Consensus 437 ~d~~~~~--~~~~~---~~~~ll~~---r----~~~~v~~~~W~~Id~~E~~~-G~~ 480 (506)
T PTZ00188 437 NFLQKVD--IFFDN---DISSLLKE---K----QIPYVSFDDWTYLHQLEKQM-GAQ 480 (506)
T ss_pred HHHhhcC--cccch---hHHHHHHh---c----CCCeecHHHHHHHHHHHHHh-ccc
Confidence 4443311 10011 22222222 2 22235678899999988888 753
No 173
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=36.75 E-value=45 Score=29.11 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=22.2
Q ss_pred CceEEecC----cEEEcCCCEEeccEEEEcCCCCC
Q psy14914 24 DIAELTPT----GVRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 24 ~I~~~~~~----~V~f~dG~~~~~D~II~aTGy~~ 54 (216)
.+..+..+ +|...+|+ +.+|.||+|||...
T Consensus 179 ~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 179 PVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred eEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 45555543 47777777 89999999999753
No 174
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=36.61 E-value=51 Score=30.15 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=24.1
Q ss_pred CcEEc-CCceEEecCcEEE--cCCC-EEeccEEEEcCCCCCC
Q psy14914 18 NVVKK-PDIAELTPTGVRF--QDGS-YEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~-~~I~~~~~~~V~f--~dG~-~~~~D~II~aTGy~~~ 55 (216)
+|++. +....++++.+.. ++|+ ++.+|.||+|||-++.
T Consensus 104 ~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~ 145 (458)
T PRK06912 104 KIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPT 145 (458)
T ss_pred CcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCC
Confidence 34443 2333445566544 3554 5799999999998864
No 175
>PRK09897 hypothetical protein; Provisional
Probab=36.56 E-value=47 Score=31.44 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=20.6
Q ss_pred CceEEec--Cc--EEEcC-CCEEeccEEEEcCCCC
Q psy14914 24 DIAELTP--TG--VRFQD-GSYEQVDIILYCTGYT 53 (216)
Q Consensus 24 ~I~~~~~--~~--V~f~d-G~~~~~D~II~aTGy~ 53 (216)
.|..++. ++ |.+.+ |..+.+|.||+|||-.
T Consensus 131 ~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 131 QVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred EEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC
Confidence 4666653 34 34445 4668999999999973
No 176
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.34 E-value=34 Score=31.94 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEcCCCEEeccEEEEcCCCCCCC
Q psy14914 33 VRFQDGSYEQVDIILYCTGYTYRY 56 (216)
Q Consensus 33 V~f~dG~~~~~D~II~aTGy~~~~ 56 (216)
+.-.||++..+|.||+|||....+
T Consensus 143 ~~~~~g~~~~ad~~Vlatgh~~~~ 166 (474)
T COG4529 143 VTTADGPSEIADIIVLATGHSAPP 166 (474)
T ss_pred EecCCCCeeeeeEEEEeccCCCCC
Confidence 556789999999999999997664
No 177
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=36.26 E-value=55 Score=29.55 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=24.2
Q ss_pred CcEEc--CCceEEecCc--EEEcCC-CEEeccEEEEcCCCC
Q psy14914 18 NVVKK--PDIAELTPTG--VRFQDG-SYEQVDIILYCTGYT 53 (216)
Q Consensus 18 ~V~~~--~~I~~~~~~~--V~f~dG-~~~~~D~II~aTGy~ 53 (216)
+|+++ ..|+.+++++ |.+.++ ..+.+|.||+|||=.
T Consensus 100 gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 100 GVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGA 140 (376)
T ss_pred CCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCc
Confidence 46664 3588885543 454444 357999999999964
No 178
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=36.00 E-value=51 Score=30.40 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=25.6
Q ss_pred CCceEEec-----CcEEEcCCCEEeccEEEEcCCCCCCC
Q psy14914 23 PDIAELTP-----TGVRFQDGSYEQVDIILYCTGYTYRY 56 (216)
Q Consensus 23 ~~I~~~~~-----~~V~f~dG~~~~~D~II~aTGy~~~~ 56 (216)
..|++|.. .+|...+|+++++|.||+|+|-...+
T Consensus 250 ~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 250 ARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred CeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 45777652 25778899989999999999975544
No 179
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=35.83 E-value=35 Score=30.42 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=27.7
Q ss_pred CcEEc--CCceEEec--C--cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~--~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|++. ..+++++. + .|.++||+++.+|.||-|.|-+..
T Consensus 126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 45654 24666642 2 478899999999999999998654
No 180
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=35.58 E-value=48 Score=29.47 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCCCcEEcCCceEEecCcEEEc---CCCEE---eccEEEEcCCCCCCCC
Q psy14914 14 RFPNNVVKKPDIAELTPTGVRFQ---DGSYE---QVDIILYCTGYTYRYP 57 (216)
Q Consensus 14 ~~p~~V~~~~~I~~~~~~~V~f~---dG~~~---~~D~II~aTGy~~~~p 57 (216)
.|+..|+..+.--.|.++.|.+. |=+.+ .+|.||+|||-..+-.
T Consensus 54 ~~~~~v~~~g~~l~~~g~~i~v~~~~~~~~~~w~gvDiVle~tG~~~s~~ 103 (334)
T PRK08955 54 RWHHEVTAEGDAIVINGKRIRTTQNKAIADTDWSGCDVVIEASGVMKTKA 103 (334)
T ss_pred CCCCCEEEcCCEEEECCEEEEEEecCChhhCCccCCCEEEEccchhhcHH
Confidence 35556666655556666666554 22221 6999999999876543
No 181
>KOG1335|consensus
Probab=34.96 E-value=59 Score=29.92 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=48.6
Q ss_pred EEeccEEEEcCCCCCCCCCCC-CCCCeEecCCcccccccccccCCCCCeEEEccCCCcc-hhhHHHHHHHHHHHHHhCC
Q psy14914 40 YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDTV-VFYMFDLQVRFFLQLMKGY 116 (216)
Q Consensus 40 ~~~~D~II~aTGy~~~~pfl~-~~~~l~~~~~~v~~ly~~~~~~~~P~L~fiG~~~~~~-~~~~~e~Qa~~ia~~~~g~ 116 (216)
++++|+++.|+|=++-..-|. +.+|+.. |.+-+-.-..-|...+||++-||=..... --.-+|-|+..+...++|.
T Consensus 300 tle~DvlLVsiGRrP~t~GLgle~iGi~~-D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 300 TLECDVLLVSIGRRPFTEGLGLEKIGIEL-DKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGG 377 (506)
T ss_pred EEEeeEEEEEccCcccccCCChhhccccc-ccccceeccccccccCCceEEecccCCcchhhhhhhhhchhheeeeccc
Confidence 368999999999873322232 1244443 22211122333456789999999876542 2367899999888888876
No 182
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=34.35 E-value=61 Score=29.43 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=21.3
Q ss_pred ceEEecCcEEEc--CC-CEEeccEEEEcCCCCCCC
Q psy14914 25 IAELTPTGVRFQ--DG-SYEQVDIILYCTGYTYRY 56 (216)
Q Consensus 25 I~~~~~~~V~f~--dG-~~~~~D~II~aTGy~~~~ 56 (216)
...++++.+... +| .++.+|.||+|||-++..
T Consensus 111 ~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~ 145 (461)
T TIGR01350 111 AKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRS 145 (461)
T ss_pred EEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCC
Confidence 333445555554 44 357999999999987653
No 183
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=34.35 E-value=48 Score=29.46 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=27.1
Q ss_pred CCCCCcEEcCCceEEecCcEEEc---CC-----CEEeccEEEEcCCCCCCCC
Q psy14914 14 RFPNNVVKKPDIAELTPTGVRFQ---DG-----SYEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 14 ~~p~~V~~~~~I~~~~~~~V~f~---dG-----~~~~~D~II~aTGy~~~~p 57 (216)
.|+..|+...+--.|.++.|.+. |= ....+|.||+|||-..+-.
T Consensus 53 ~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~~w~~~gvDiVle~tG~f~s~~ 104 (331)
T PRK15425 53 RFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDE 104 (331)
T ss_pred CcCCcEEecCCEEEECCeEEEEEEcCChhhCcccccCCCEEEEecchhhcHH
Confidence 46656666555445566665554 21 1236999999999865533
No 184
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=33.15 E-value=40 Score=29.72 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=24.2
Q ss_pred CceEEe--cCc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 24 DIAELT--PTG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 24 ~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.+.+++ +++ |.+++|+++.+|.||.|+|-...
T Consensus 133 ~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 133 EAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred eeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 366664 233 67788988999999999999754
No 185
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=33.00 E-value=59 Score=29.63 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=24.6
Q ss_pred CcEEcC-CceEEecCcEEEc--C-CCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKKP-DIAELTPTGVRFQ--D-GSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~~-~I~~~~~~~V~f~--d-G~~~~~D~II~aTGy~~~ 55 (216)
+|+++. ....++++.+... + ++++.+|.||+|||-++.
T Consensus 106 gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 106 KVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPR 147 (462)
T ss_pred CCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence 455543 3444555555553 3 356799999999998754
No 186
>PRK10262 thioredoxin reductase; Provisional
Probab=32.49 E-value=67 Score=27.60 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=19.9
Q ss_pred CcEEEc-CCCEEeccEEEEcCCCCCCCCCCC
Q psy14914 31 TGVRFQ-DGSYEQVDIILYCTGYTYRYPFLH 60 (216)
Q Consensus 31 ~~V~f~-dG~~~~~D~II~aTGy~~~~pfl~ 60 (216)
+.+.+. +...+.+|.||+|||..+..|-++
T Consensus 93 ~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~ 123 (321)
T PRK10262 93 RPFRLTGDSGEYTCDALIIATGASARYLGLP 123 (321)
T ss_pred CeEEEEecCCEEEECEEEECCCCCCCCCCCC
Confidence 334443 233578999999999987654333
No 187
>KOG2311|consensus
Probab=32.44 E-value=32 Score=32.50 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred CcEEEcCCCEEeccEEEEcCCC
Q psy14914 31 TGVRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 31 ~~V~f~dG~~~~~D~II~aTGy 52 (216)
.||++.||+.+.++.||+-||=
T Consensus 163 ~gV~l~dgt~v~a~~VilTTGT 184 (679)
T KOG2311|consen 163 SGVVLVDGTVVYAESVILTTGT 184 (679)
T ss_pred EEEEEecCcEeccceEEEeecc
Confidence 5799999999999999999995
No 188
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=32.12 E-value=43 Score=29.43 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=26.7
Q ss_pred CcEEc-CCceEEe--cCc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK-PDIAELT--PTG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~-~~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|++. ..+.++. +++ |.+.||+++.+|.||.|+|....
T Consensus 126 ~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 126 NLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred CcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 35554 2366664 233 67788988999999999999654
No 189
>PLN02697 lycopene epsilon cyclase
Probab=32.11 E-value=77 Score=29.97 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=25.7
Q ss_pred cEEc-CCceEEec--Cc---EEEcCCCEEeccEEEEcCCCCC
Q psy14914 19 VVKK-PDIAELTP--TG---VRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 19 V~~~-~~I~~~~~--~~---V~f~dG~~~~~D~II~aTGy~~ 54 (216)
+++. ..+.+++. ++ +++.||.++.+|.||.|||...
T Consensus 207 V~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 207 VSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred CEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 4443 34666652 33 4567898899999999999976
No 190
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=31.15 E-value=39 Score=32.32 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.3
Q ss_pred CcEEEcCCCEEeccEEEEcCCC
Q psy14914 31 TGVRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 31 ~~V~f~dG~~~~~D~II~aTGy 52 (216)
.+|++.+|..+.+++||+.||=
T Consensus 135 ~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 135 VGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred EEEEeCCCCeeecCEEEEeecc
Confidence 5789999999999999999995
No 191
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=30.73 E-value=80 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred cEEcC--CceEEecCc---EEEcCCCEEeccEEEEcCCC
Q psy14914 19 VVKKP--DIAELTPTG---VRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 19 V~~~~--~I~~~~~~~---V~f~dG~~~~~D~II~aTGy 52 (216)
+++.. .|.+++.+. |...+| ++.+|.||+|||-
T Consensus 198 v~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 198 VEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred CEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEcccc
Confidence 45542 366665432 555556 5789999999994
No 192
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=30.53 E-value=31 Score=24.81 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=22.9
Q ss_pred EcCCceEEecCcEEE-cCCCE----EeccEEEEcCCCCCCC
Q psy14914 21 KKPDIAELTPTGVRF-QDGSY----EQVDIILYCTGYTYRY 56 (216)
Q Consensus 21 ~~~~I~~~~~~~V~f-~dG~~----~~~D~II~aTGy~~~~ 56 (216)
++|+|..|.++.-.. .+.+. +.-|-||++||+..+|
T Consensus 55 vvPdis~f~~~w~~~~~p~~VPisLVR~DGvIY~T~ltFtY 95 (97)
T cd01176 55 VVPDISAFREEWRWVRQPVQVPISLVRNDGIIYPTGLTFTY 95 (97)
T ss_pred ecCCHHHhccCceEecCceEeeEEEEecCCeEecCCceEEe
Confidence 567777777654222 22221 2579999999997765
No 193
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=30.40 E-value=53 Score=28.87 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=27.0
Q ss_pred CcEEc--CCceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+++++ ..+.++.. ++ |.+++|..+.+|.||.|+|....
T Consensus 127 g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 127 GVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 35554 24666642 33 67788988899999999998754
No 194
>TIGR01901 adhes_NPXG filamentous haemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.
Probab=30.38 E-value=86 Score=21.74 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=26.5
Q ss_pred CCcEEcC--CceEEecCcEEEcCCCEEeccEEEEcCC
Q psy14914 17 NNVVKKP--DIAELTPTGVRFQDGSYEQVDIILYCTG 51 (216)
Q Consensus 17 ~~V~~~~--~I~~~~~~~V~f~dG~~~~~D~II~aTG 51 (216)
+.+++.+ .+-=+.++||.|..+..+++.-+++.|+
T Consensus 40 G~l~~~G~a~v~l~NPnGI~~g~~~~in~~~~~~sT~ 76 (79)
T TIGR01901 40 GLLQVNGKANVFLINPNGIIFGGGAQINVGGLVASTT 76 (79)
T ss_pred cEEEECCeEeEEEECCCCEEECCCceEecCceEEecc
Confidence 3455555 4555568899998898999999988886
No 195
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=30.18 E-value=54 Score=30.39 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=25.6
Q ss_pred CCCCCcEE-cCCceEEecCcEEEcCCC--------EEeccEEEEcCCCCCC
Q psy14914 14 RFPNNVVK-KPDIAELTPTGVRFQDGS--------YEQVDIILYCTGYTYR 55 (216)
Q Consensus 14 ~~p~~V~~-~~~I~~~~~~~V~f~dG~--------~~~~D~II~aTGy~~~ 55 (216)
.|+..|++ -.+--.|.++.|.+.+.+ ...+|.||.|||-..+
T Consensus 128 ~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s 178 (442)
T PLN02237 128 TFKADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVD 178 (442)
T ss_pred CcCCceEECCCCEEEECCEEEEEEEcCCchhCChhhcCCCEEEEccChhhh
Confidence 35555655 334455566666554431 1469999999997544
No 196
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=29.97 E-value=46 Score=31.47 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=17.4
Q ss_pred CcEEEcCCC-E--EeccEEEEcCCCCC
Q psy14914 31 TGVRFQDGS-Y--EQVDIILYCTGYTY 54 (216)
Q Consensus 31 ~~V~f~dG~-~--~~~D~II~aTGy~~ 54 (216)
..|.|+... . +++-+||.||||+.
T Consensus 286 ~av~~~q~~e~ve~~vGaIIvAtGy~~ 312 (622)
T COG1148 286 EAVDLNQEPEEVELEVGAIIVATGYKP 312 (622)
T ss_pred cccccCCCCcEEEEEeceEEEEccccc
Confidence 346666543 3 47999999999974
No 197
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=28.67 E-value=78 Score=28.74 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=24.1
Q ss_pred cEEcCCceEEec--Cc--EEEcCCCEEeccEEEEcCCC
Q psy14914 19 VVKKPDIAELTP--TG--VRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 19 V~~~~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy 52 (216)
|..-..|++|+. ++ |...+|+++.+|.||+|+-.
T Consensus 241 i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 241 VKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH 278 (463)
T ss_pred EEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence 433445777763 33 56678888899999999953
No 198
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=28.28 E-value=98 Score=28.04 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.2
Q ss_pred cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 32 GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 32 ~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|.+.||+++.+|.||-|-|=+..
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCCh
Confidence 478899999999999999999764
No 199
>PF08476 VD10_N: Viral D10 N-terminal; InterPro: IPR013683 This domain is found on the N terminus of the viral protein D10 (VD10) and the related MutT motif proteins []. The VD10 protein is probably essential for virus replication [] and is often found to the N terminus of a NUDIX hydrolase domain. Previous studies indicated that the vaccinia virus D10 protein, which is conserved in all sequenced poxviruses, participates in the rapid turnover of host and viral mRNAs. D10 contains a motif present in the family of Nudix/MutT enzymes, a subset of which has been shown to enhance mRNA turnover in eukaryotic cells through cleavage of the 5' cap (m7GpppNm-). The D10 protein possesses an intrinsic activity that liberates m7GDP from capped RNA substrates. Furthermore, point mutations in the Nudix/MutT motif abolished decapping activity. D10 has a strong affinity for capped RNA substrates of lengths of 24-309 nt were decapped efficiently. The poxviruses represent the only virus family shown to encode a Nudix hydrolase-decapping enzyme. The activity of the decapping and capping enzymes, accelerate mRNA turnover and helps to eliminate competing host mRNAs allowing stage-specific synthesis of viral proteins [].; GO: 0016791 phosphatase activity
Probab=26.86 E-value=59 Score=20.14 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=14.0
Q ss_pred CcEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 31 TGVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 31 ~~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
++.+|.|+.. .|.+|||...
T Consensus 21 ktyi~~Dd~Q-----rI~aT~F~nq 40 (45)
T PF08476_consen 21 KTYIFSDDSQ-----RITATGFNNQ 40 (45)
T ss_pred CcEEEecCCe-----EEEEeehhhh
Confidence 5567777765 4889999654
No 200
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=26.30 E-value=89 Score=30.16 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=22.4
Q ss_pred CceEEe--cCc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 24 DIAELT--PTG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 24 ~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
.|.+++ +++ |..++|+.+.+|.||.|||....
T Consensus 429 ~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 429 EVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred EeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 466664 233 45566766789999999999753
No 201
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=26.26 E-value=1.1e+02 Score=27.99 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=19.2
Q ss_pred cCcEEE--cCCC--EEeccEEEEcCCCCCCC
Q psy14914 30 PTGVRF--QDGS--YEQVDIILYCTGYTYRY 56 (216)
Q Consensus 30 ~~~V~f--~dG~--~~~~D~II~aTGy~~~~ 56 (216)
+++|.. .||+ ++.+|.||+|||=.+..
T Consensus 119 ~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 149 (466)
T PRK07818 119 ANTLEVDLNDGGTETVTFDNAIIATGSSTRL 149 (466)
T ss_pred CCEEEEEecCCCeeEEEcCEEEEeCCCCCCC
Confidence 455555 3554 47899999999987653
No 202
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=26.02 E-value=60 Score=28.30 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=21.0
Q ss_pred CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCC
Q psy14914 24 DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTY 54 (216)
Q Consensus 24 ~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~ 54 (216)
.+.++.. ++ |..++| .+.+|.||.|||...
T Consensus 171 ~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 171 PVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred EEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 4666643 22 555566 679999999999864
No 203
>PLN02676 polyamine oxidase
Probab=25.56 E-value=1.2e+02 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=26.9
Q ss_pred CcEEcCCceEEe--cCc--EEEcCCCEEeccEEEEcCCCC
Q psy14914 18 NVVKKPDIAELT--PTG--VRFQDGSYEQVDIILYCTGYT 53 (216)
Q Consensus 18 ~V~~~~~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy~ 53 (216)
+|..-..|++|+ +++ |...||+++.+|.||+|....
T Consensus 246 ~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 246 RLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred ceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence 466656677776 344 556789899999999999853
No 204
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=25.46 E-value=96 Score=27.64 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=25.5
Q ss_pred CCCCCcEEcCCceEEecCcEEEcCC--------CEEeccEEEEcCCCCCCCC
Q psy14914 14 RFPNNVVKKPDIAELTPTGVRFQDG--------SYEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 14 ~~p~~V~~~~~I~~~~~~~V~f~dG--------~~~~~D~II~aTGy~~~~p 57 (216)
.|+..|+...+--.++++.|.+... ....+|.|++|||-..+-.
T Consensus 54 ~~~~~v~~~~~~l~i~g~~i~~~~~~dp~~lpW~~~gvDiVle~tG~~~s~~ 105 (337)
T PTZ00023 54 SLPAEVSVTDGFLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKE 105 (337)
T ss_pred CCCCcEEecCCEEEECCeEEEEEeCCChhhCCccccCCCEEEEecchhcCHH
Confidence 3555565544433345555544322 1246999999999865533
No 205
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=25.46 E-value=31 Score=20.73 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=9.6
Q ss_pred CcEEEcCCCEEecc
Q psy14914 31 TGVRFQDGSYEQVD 44 (216)
Q Consensus 31 ~~V~f~dG~~~~~D 44 (216)
..++|+||+..+.+
T Consensus 28 e~i~FaDGt~w~~~ 41 (43)
T PF06594_consen 28 EQIEFADGTVWTRA 41 (43)
T ss_pred eEEEEcCCCEecHH
Confidence 34788888876543
No 206
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.18 E-value=1.9e+02 Score=26.50 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=37.1
Q ss_pred cEEEcCCCEEeccEEEEcCCCCCCCCCCCCC-----CCeEecCCcccccccccccCCCCCeEEEccCCCc
Q psy14914 32 GVRFQDGSYEQVDIILYCTGYTYRYPFLHES-----CGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDT 96 (216)
Q Consensus 32 ~V~f~dG~~~~~D~II~aTGy~~~~pfl~~~-----~~l~~~~~~v~~ly~~~~~~~~P~L~fiG~~~~~ 96 (216)
.|.+.+|..++...||++||=+..---.+.+ .|+..=.+.--|||++- ..+.||.-+++
T Consensus 303 ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK------~VAVIGGGNSG 366 (520)
T COG3634 303 EVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGK------RVAVIGGGNSG 366 (520)
T ss_pred EEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCc------eEEEECCCcch
Confidence 4889999999999999999987542111111 12221112112455543 78999998875
No 207
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=25.12 E-value=83 Score=28.71 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCCCcEE-cCCceEEecCcEEEcCCC--------EEeccEEEEcCCCCCCC
Q psy14914 15 FPNNVVK-KPDIAELTPTGVRFQDGS--------YEQVDIILYCTGYTYRY 56 (216)
Q Consensus 15 ~p~~V~~-~~~I~~~~~~~V~f~dG~--------~~~~D~II~aTGy~~~~ 56 (216)
|+..|+. .++--.|.++.|.+.+.+ ...+|.||.|||-..+-
T Consensus 114 f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~ 164 (395)
T PLN03096 114 FDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDR 164 (395)
T ss_pred cCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhH
Confidence 4444543 233444555555443311 23699999999986553
No 208
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=24.82 E-value=52 Score=31.10 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=30.4
Q ss_pred EEEc-CCCE--EeccEEEEcCCCCCCCCCCCC-C-CCeE-ecCCcc-cccccccccCCCCCeEEEccCCCc
Q psy14914 33 VRFQ-DGSY--EQVDIILYCTGYTYRYPFLHE-S-CGIK-VVNKNV-QPLYKHLINIEHPSMCIIGIPGDT 96 (216)
Q Consensus 33 V~f~-dG~~--~~~D~II~aTGy~~~~pfl~~-~-~~l~-~~~~~v-~~ly~~~~~~~~P~L~fiG~~~~~ 96 (216)
|... +|+. ..+|+||.|||... .|.++. . -|+. ..+.-+ ..-|+.--.-...+..+||...++
T Consensus 126 V~~~~~g~~~~~~fD~VvvatG~~~-~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg 195 (531)
T PF00743_consen 126 VTTENDGKEETEEFDAVVVATGHFS-KPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSG 195 (531)
T ss_dssp EEETTTTEEEEEEECEEEEEE-SSS-CESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHH
T ss_pred EEeecCCeEEEEEeCeEEEcCCCcC-CCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhH
Confidence 5554 3443 36999999999864 344432 1 1221 111111 123444322234688999987654
No 209
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=24.58 E-value=1.1e+02 Score=27.17 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=25.8
Q ss_pred CCCCcEEcCCceEEecCcEEEc---CC-----CEEeccEEEEcCCCCCCCC
Q psy14914 15 FPNNVVKKPDIAELTPTGVRFQ---DG-----SYEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 15 ~p~~V~~~~~I~~~~~~~V~f~---dG-----~~~~~D~II~aTGy~~~~p 57 (216)
|+..|+..++--.+.++.+.+. |= ....+|+|+.|||-..+-.
T Consensus 54 ~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~e 104 (325)
T TIGR01532 54 FPGEVKVDGDCLHVNGDCIRVLHSPTPEALPWRALGVDLVLDCTGVYGNRE 104 (325)
T ss_pred CCCcEEEeCCEEEECCeEEEEEEcCChhhccccccCCCEEEEccchhccHH
Confidence 5555555554445555555444 11 1247999999999876543
No 210
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=24.31 E-value=1e+02 Score=27.38 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCCCcEEcCCceEEecCcEEEc---CCC-----EEeccEEEEcCCCCCC
Q psy14914 15 FPNNVVKKPDIAELTPTGVRFQ---DGS-----YEQVDIILYCTGYTYR 55 (216)
Q Consensus 15 ~p~~V~~~~~I~~~~~~~V~f~---dG~-----~~~~D~II~aTGy~~~ 55 (216)
|+..|+..++--.|.++.|.+. |=+ ...+|.||+|||-..+
T Consensus 56 ~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~~w~~~gvDiVle~tG~~~s 104 (336)
T PRK13535 56 FAWDVRQERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGS 104 (336)
T ss_pred CCCcEEecCCEEEECCEEEEEEEcCCcccCcccccCCCEEEEccchhhh
Confidence 4445555444444555555444 211 2469999999998655
No 211
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=23.96 E-value=98 Score=27.43 Aligned_cols=44 Identities=27% Similarity=0.284 Sum_probs=26.9
Q ss_pred CCCCCcEEcCC-ceEEecC-cEEEc---CCC-----EEeccEEEEcCCCCCCCC
Q psy14914 14 RFPNNVVKKPD-IAELTPT-GVRFQ---DGS-----YEQVDIILYCTGYTYRYP 57 (216)
Q Consensus 14 ~~p~~V~~~~~-I~~~~~~-~V~f~---dG~-----~~~~D~II~aTGy~~~~p 57 (216)
.|+..|++..+ --.|.++ .+.+. |=+ ...+|.|++|||-..+-.
T Consensus 52 ~~~~~v~~~~~~~l~i~g~~~i~v~~~~dp~~~~w~~~gvDiVle~tG~~~s~~ 105 (327)
T TIGR01534 52 RFEGEVTADEDKGLVVNGKFVIVVASERDPSDLPWKALGVDIVIECTGKFRDKE 105 (327)
T ss_pred CCCCcEEecCCceEEECCeEEEEEEecCCcccCchhhcCCCEEEEccchhhcHH
Confidence 46666766555 4455555 55444 211 236999999999866543
No 212
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=23.91 E-value=1.3e+02 Score=26.17 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=19.7
Q ss_pred CceEEec--Cc--EEEcCCCEEeccEEEEcCCCC
Q psy14914 24 DIAELTP--TG--VRFQDGSYEQVDIILYCTGYT 53 (216)
Q Consensus 24 ~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~ 53 (216)
.|.+++. +. |...+| ++.+|.||.|||-.
T Consensus 167 ~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 167 KVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred eEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 3666653 22 455555 67899999999964
No 213
>PLN02568 polyamine oxidase
Probab=23.88 E-value=1.1e+02 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=25.0
Q ss_pred cEEcCCceEEec--Cc--EEEcCCCEEeccEEEEcCCC
Q psy14914 19 VVKKPDIAELTP--TG--VRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 19 V~~~~~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy 52 (216)
|..-..|++|+. ++ |.+.||+++.+|.||+++--
T Consensus 257 I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 257 IQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred EEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 555456777752 33 67789988999999998754
No 214
>PRK06834 hypothetical protein; Provisional
Probab=23.38 E-value=1.3e+02 Score=27.91 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=26.3
Q ss_pred cEEcC--CceEEec--Cc--EEEcCCCEEeccEEEEcCCCCCC
Q psy14914 19 VVKKP--DIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 19 V~~~~--~I~~~~~--~~--V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
|++.. .+.+++. ++ |.+.+|+++.+|.||.|+|-+..
T Consensus 115 v~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 115 VPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred CEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 55542 4666653 33 56678888899999999998754
No 215
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=23.10 E-value=1.1e+02 Score=28.09 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=26.2
Q ss_pred cCCceEEe--cC---cEEEcCCCEEeccEEEEcCCCCCCC
Q psy14914 22 KPDIAELT--PT---GVRFQDGSYEQVDIILYCTGYTYRY 56 (216)
Q Consensus 22 ~~~I~~~~--~~---~V~f~dG~~~~~D~II~aTGy~~~~ 56 (216)
...|++|. ++ +|...+|+++.+|.||+|++....+
T Consensus 239 ~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 239 NAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred CCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 34577765 22 5788899989999999999985543
No 216
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=21.73 E-value=1.1e+02 Score=27.28 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=27.2
Q ss_pred CCCCCcEEcCCceEEecCcEEEc---CCC-----EEeccEEEEcCCCCCCCCC
Q psy14914 14 RFPNNVVKKPDIAELTPTGVRFQ---DGS-----YEQVDIILYCTGYTYRYPF 58 (216)
Q Consensus 14 ~~p~~V~~~~~I~~~~~~~V~f~---dG~-----~~~~D~II~aTGy~~~~pf 58 (216)
.|+..|++..+--.|.++.|.+. |=+ ...+|.|++|||-..+-.+
T Consensus 53 ~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~~W~~~gvDiVle~tG~f~s~~~ 105 (343)
T PRK07729 53 KFDGTVEAFEDHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEK 105 (343)
T ss_pred CCCCcEEecCCEEEECCEEEEEEEcCChhhCcccccCCCEEEEccchhhhHhH
Confidence 35556666555445555555554 211 2369999999998765433
No 217
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=21.47 E-value=1.1e+02 Score=27.37 Aligned_cols=45 Identities=9% Similarity=-0.016 Sum_probs=26.4
Q ss_pred CCCC-CcEE-cCCceEEecCcEEEcCCC---E-----EeccEEEEcCCCCCCCCC
Q psy14914 14 RFPN-NVVK-KPDIAELTPTGVRFQDGS---Y-----EQVDIILYCTGYTYRYPF 58 (216)
Q Consensus 14 ~~p~-~V~~-~~~I~~~~~~~V~f~dG~---~-----~~~D~II~aTGy~~~~pf 58 (216)
.|+. .|+. .+.--.+.++.+.+.+-+ . ..+|.||+|||-..+-.+
T Consensus 57 ~~~~~~v~~~~g~~l~~~g~~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~ 111 (338)
T PLN02358 57 QWKHHELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDK 111 (338)
T ss_pred CcCCCeEEECCCCEEEECCEEEEEEEcCCcccCcccccCCCEEEEcccchhhHHH
Confidence 3553 5655 233344555555554332 2 369999999999766443
No 218
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=21.35 E-value=92 Score=18.83 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=14.2
Q ss_pred CceEEecCcEEEcCCCEEe
Q psy14914 24 DIAELTPTGVRFQDGSYEQ 42 (216)
Q Consensus 24 ~I~~~~~~~V~f~dG~~~~ 42 (216)
.|.-+.+.+++|+||+.+.
T Consensus 21 ~ivl~GpSG~v~sdG~nvQ 39 (40)
T PF08140_consen 21 NIVLIGPSGAVLSDGKNVQ 39 (40)
T ss_pred eEEEECCceEEeeCCcEec
Confidence 4566667889999998653
No 219
>PLN02268 probable polyamine oxidase
Probab=21.34 E-value=1.2e+02 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCceEEe--cCc--EEEcCCCEEeccEEEEcCCC
Q psy14914 23 PDIAELT--PTG--VRFQDGSYEQVDIILYCTGY 52 (216)
Q Consensus 23 ~~I~~~~--~~~--V~f~dG~~~~~D~II~aTGy 52 (216)
..|.+++ +++ |.+.||+++.+|.||+|+--
T Consensus 217 ~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 217 HRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred CeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 4577775 344 66678988999999999844
No 220
>PRK08401 L-aspartate oxidase; Provisional
Probab=20.89 E-value=81 Score=29.01 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCCEEeccEEEEcCCCCCC
Q psy14914 37 DGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 37 dG~~~~~D~II~aTGy~~~ 55 (216)
+|..+.+|.||+|||=...
T Consensus 158 ~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 DGELLKFDATVIATGGFSG 176 (466)
T ss_pred CCEEEEeCeEEECCCcCcC
Confidence 6667789999999997543
No 221
>KOG0685|consensus
Probab=20.87 E-value=1.1e+02 Score=28.76 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=25.4
Q ss_pred CCcEEcCCceEEecC-----cEEEcCCCEEeccEEEEc
Q psy14914 17 NNVVKKPDIAELTPT-----GVRFQDGSYEQVDIILYC 49 (216)
Q Consensus 17 ~~V~~~~~I~~~~~~-----~V~f~dG~~~~~D~II~a 49 (216)
++|.....|..++.+ .|.++||+...+|.||+-
T Consensus 244 ~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvT 281 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVT 281 (498)
T ss_pred hhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEE
Confidence 456666778888754 267889999999999874
No 222
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=20.70 E-value=84 Score=29.34 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.9
Q ss_pred cEEEcCCCEEeccEEEEcCCCCCC
Q psy14914 32 GVRFQDGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 32 ~V~f~dG~~~~~D~II~aTGy~~~ 55 (216)
+|+.++|..+++|.||+|.|=.-.
T Consensus 208 ~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 208 GVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred EEEccCCcEEecCEEEEccCcchH
Confidence 588899999999999999997543
No 223
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=20.66 E-value=1.7e+02 Score=25.83 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=24.8
Q ss_pred CcEEc--CCceEEec--Cc--EEEcC-C--CEEeccEEEEcCCCCCC
Q psy14914 18 NVVKK--PDIAELTP--TG--VRFQD-G--SYEQVDIILYCTGYTYR 55 (216)
Q Consensus 18 ~V~~~--~~I~~~~~--~~--V~f~d-G--~~~~~D~II~aTGy~~~ 55 (216)
+|++. ..+.+++. ++ |.+.+ | .++.+|.||-|+|....
T Consensus 136 ~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 136 NITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred CcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 46664 24666642 33 66654 3 24799999999998764
No 224
>PLN02487 zeta-carotene desaturase
Probab=20.56 E-value=1.4e+02 Score=28.58 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=24.0
Q ss_pred cEEcCCceEEec----------CcEEEc---CCCEEeccEEEEcCCCCCC
Q psy14914 19 VVKKPDIAELTP----------TGVRFQ---DGSYEQVDIILYCTGYTYR 55 (216)
Q Consensus 19 V~~~~~I~~~~~----------~~V~f~---dG~~~~~D~II~aTGy~~~ 55 (216)
|.....|++++- .+|.++ +|.++++|+||+|++-..-
T Consensus 312 V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~ 361 (569)
T PLN02487 312 FHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGI 361 (569)
T ss_pred EEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHH
Confidence 445566777752 135662 3345789999999998643
No 225
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=20.55 E-value=1.2e+02 Score=27.93 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=26.1
Q ss_pred CCCCCcEE-cCCceEEecCcEEEc---CCCE-----EeccEEEEcCCCCCCCC
Q psy14914 14 RFPNNVVK-KPDIAELTPTGVRFQ---DGSY-----EQVDIILYCTGYTYRYP 57 (216)
Q Consensus 14 ~~p~~V~~-~~~I~~~~~~~V~f~---dG~~-----~~~D~II~aTGy~~~~p 57 (216)
.|+..|++ ..+.-.|.++.|.+. |=+. ..+|.||+|||-..+-.
T Consensus 137 ~f~~~v~~~~~~~l~~~G~~I~V~~~~dp~~~~w~~~gVDiVlesTG~f~s~e 189 (421)
T PLN02272 137 NFKGTINVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVE 189 (421)
T ss_pred CCCCcEEEccCCEEEECCEEEEEEecCCcccCcccccCCCEEEEcCchhccHH
Confidence 35556665 344445556565554 2111 25999999999865543
No 226
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=20.54 E-value=2e+02 Score=27.13 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=24.5
Q ss_pred cEEc-CCceEEecC----cEEEcCCCEEeccEEEEcCCCCCCCCCC
Q psy14914 19 VVKK-PDIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFL 59 (216)
Q Consensus 19 V~~~-~~I~~~~~~----~V~f~dG~~~~~D~II~aTGy~~~~pfl 59 (216)
+++. ..+.+++.+ .|...+| .+.+|.||+|||-.+..|-+
T Consensus 75 v~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~i 119 (555)
T TIGR03143 75 VKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGF 119 (555)
T ss_pred CEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCC
Confidence 4443 235555532 2445455 46889999999997665433
No 227
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=20.28 E-value=1.1e+02 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=21.8
Q ss_pred cEEc--CCceEEec--Cc---EEEcCCCEEeccEEEEcCCCC
Q psy14914 19 VVKK--PDIAELTP--TG---VRFQDGSYEQVDIILYCTGYT 53 (216)
Q Consensus 19 V~~~--~~I~~~~~--~~---V~f~dG~~~~~D~II~aTGy~ 53 (216)
+++. ..|.+++. ++ |... +.++.+|.||.|||..
T Consensus 216 ~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~ 256 (416)
T PRK00711 216 VKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSY 256 (416)
T ss_pred CEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcc
Confidence 4554 24666653 22 3334 4467899999999974
Done!