RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14914
(216 letters)
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 87.6 bits (217), Expect = 3e-20
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 14/144 (9%)
Query: 35 FQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIE-HPSMCIIGIP 93
F++G D I++CTGY Y +PFL + +++ V+PLYKH+ P + IG+P
Sbjct: 269 FKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLP 328
Query: 94 GDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQS-----THTHVM 148
+ F MF++Q ++ ++ G VTLPS+ +M+ +DI A ++ +TH +
Sbjct: 329 AMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMM----EDINAWYASLEALGIPKRYTHKL 384
Query: 149 HLRSEKYLNSLASMMRGESPVPPV 172
+YLN +A E P V
Sbjct: 385 GKIQSEYLNWIAE----ECGCPLV 404
>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like. This
family includes FMO proteins, cyclohexanone
mono-oxygenase and a number of different
mono-oxygenases.
Length = 532
Score = 84.5 bits (209), Expect = 5e-19
Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 19 VVKKPDIAELTPTGVRFQDGSYEQ-VDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYK 77
V KP + E T T F+DG+ E+ +D++++ TGYT+ +PFL ES +KV + LYK
Sbjct: 296 VKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGYTFSFPFLEESL-VKVETNKIS-LYK 353
Query: 78 HLI--NIEHPSMCIIGIPGDT-VVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIR 134
++ N+E P++ IIG+ + +LQ R+ +++ KG LPS ++M+ + +
Sbjct: 354 YVFPPNLEKPTLAIIGLIQPLGSIIPTVELQARWAVRVFKGLCKLPSSSKMMEEITEKKE 413
Query: 135 AHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLK 175
K + + + Y++ LA+ + + +P + L
Sbjct: 414 KKIKRFGFSQSSTIQTDYIAYMDELAAFIGAKPNLPSLFLT 454
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 31.3 bits (71), Expect = 0.34
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 33 VRFQDGSYEQVDIILYCTGYTYRYP---FLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 88
V F DG+ E D +LY TG R P L+ + G+ V N NI P++
Sbjct: 257 VLFSDGTTELFDTVLYATG---RKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNI--PNIF 311
Query: 89 IIG 91
+G
Sbjct: 312 AVG 314
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 28.6 bits (64), Expect = 2.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 32 GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKV 67
+RF+DGS + D+I+ G L S GIKV
Sbjct: 216 RIRFKDGSSLEADLIVMAAGIRPNDE-LAVSAGIKV 250
>gnl|CDD|217960 pfam04199, Cyclase, Putative cyclase. Proteins in this family are
thought to be cyclase enzymes. They are found in
proteins involved in antibiotic synthesis. However they
are also found in organisms that do not make antibiotics
pointing to a wider role for these proteins. The
proteins contain a conserved motif HXGTHXDXPXH that is
likely to form part of the active site.
Length = 162
Score = 27.3 bits (61), Expect = 3.8
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 10 VKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYP---FLHESCGI 65
V P + D+ G + G DI+L TG+ R+ + + G+
Sbjct: 82 VAHKLPPGYEITAADLEAALKQGGTIKPG-----DIVLIRTGWDKRWGTPEYYNNHPGL 135
>gnl|CDD|225134 COG2224, AceA, Isocitrate lyase [Energy production and conversion].
Length = 433
Score = 27.7 bits (62), Expect = 5.6
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 101 MFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKES 140
MF+L + + MK YV + + A+ H++E
Sbjct: 363 MFELARAYAQEGMKAYVEVQEREFAAAEDGYTAVKHQREV 402
>gnl|CDD|165188 PHA02849, PHA02849, putative transmembrane protein; Provisional.
Length = 82
Score = 26.0 bits (57), Expect = 6.3
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 45 IILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGI 92
++LY ++Y FL++ IK++N + + HL N+ + S I+G+
Sbjct: 33 MLLYLIKWSYVINFLND-MKIKLINLTTRRSFTHLNNVYYTSDNIVGL 79
>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational
modification, protein turnover, chaperones].
Length = 162
Score = 26.8 bits (60), Expect = 6.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 65 IKVVNKNVQPLYKHLIN 81
I V KN PLYK+L
Sbjct: 97 IDVNGKNAHPLYKYLKE 113
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 27.3 bits (60), Expect = 8.8
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 42 QVDIILYCT-GYTYRY-PFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDTVVF 99
++D I + G + Y F +S K K H INI P +
Sbjct: 2773 ELDFIKQNSRGVSLSYIIFKKDSKKHKFSCKCSSNQSNHTINITFDPDADHPEPKSRAII 2832
Query: 100 YMFDLQVRFFLQLMKG 115
FDLQ F + ++G
Sbjct: 2833 KYFDLQDANFAKHLRG 2848
>gnl|CDD|107274 cd06279, PBP1_LacI_like_3, Ligand-binding domain of uncharacterized
DNA-binding regulatory proteins that are members of the
LacI-GalR family of bacterial transcription repressors.
This group includes the ligand-binding domain of
uncharacterized DNA-binding regulatory proteins that are
members of the LacI-GalR family of bacterial
transcription repressors. The LacI-GalR family
repressors are composed of two functional domains: an
N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal ligand-binding domain, which is homologous to
the sugar-binding domain of ABC-type transport systems
that contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 283
Score = 26.8 bits (60), Expect = 9.4
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 32/96 (33%)
Query: 77 KHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAH 136
+HL+++ H + I+G+ L R
Sbjct: 109 RHLLDLGHRRIGILGLR--------------------------------LGRDRNTGRVT 136
Query: 137 RKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPV 172
+ S V R E YL +L S VP
Sbjct: 137 DERLASATFSVARERLEGYLEALEEAGIDISDVPIW 172
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 27.1 bits (60), Expect = 9.9
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 117 VTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKI 176
++ P+ A+++A + AH + V +L++ SL + G S VPP+L+K
Sbjct: 259 LSAPTLAKIIATAMPRV-AHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKA 317
Query: 177 YFESF 181
+ E +
Sbjct: 318 WEERY 322
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.417
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,184,791
Number of extensions: 1030554
Number of successful extensions: 793
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 28
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)