RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14914
(216 letters)
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 150 bits (380), Expect = 2e-43
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 4/208 (1%)
Query: 1 VFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLH 60
+S + ++P N ++P++ + F DGS E+VD I+ CTGY + +PFL+
Sbjct: 223 KLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN 282
Query: 61 ESCGIKVVNKN-VQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGYVTL 119
+ + N+ LYK ++ ++P IG+ F MFD Q + ++ G + L
Sbjct: 283 DDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPL 342
Query: 120 PSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFE 179
PSK EM AD+ KE M+ Y+ +L M S P K + E
Sbjct: 343 PSKEEMKADSMAWR---EKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLE 399
Query: 180 SFARRCEDFTAFRKDKYKIINEKVFVRE 207
+ E+ FR Y+ + +
Sbjct: 400 WKHHKKENIMTFRDHSYRSLMTGTMAPK 427
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 123 bits (311), Expect = 1e-33
Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 14/213 (6%)
Query: 1 VFLSHHSEHVKKLRFPNNVVKKPDIAELTPTG--VRFQDGSYEQ-VDIILYCTGYTYRYP 57
++ + P+I + PT + + G +D ++YCTGY Y P
Sbjct: 238 PIYQSLLG--GGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVP 295
Query: 58 FLHES------CGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQ 111
F + + +V +Y+H+ I P++ +G+ V F Q F +
Sbjct: 296 FPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLAR 355
Query: 112 LMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPP 171
+ G + LPSK E L D+ + + + H+ + + + Y+N L + +PV
Sbjct: 356 VWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHS-LDYPKDATYINKLHDWCKQATPVLE 414
Query: 172 VLL--KIYFESFARRCEDFTAFRKDKYKIINEK 202
+ E E+ + R + I K
Sbjct: 415 EEFPSPYWGEKERSIRENMWSIRAKFFGIEPPK 447
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 55.5 bits (134), Expect = 2e-09
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 10 VKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN 69
V R + P A +PTG+++ DG+ D +++CTG+ L + +
Sbjct: 241 VLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHL-KGLDLVTPQ 299
Query: 70 KNVQPLYKHLINIEHPSMCIIGIP 93
V+ L + PS+ ++G
Sbjct: 300 GQVEVDGSGLRALAVPSVWLLGYG 323
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 42.2 bits (100), Expect = 6e-05
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 16 PN----NVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 52
N + + P I +TP GVR + YE +D ++ TG+
Sbjct: 351 DNVHLVDTLSAP-IETITPRGVRTSEREYE-LDSLVLATGF 389
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 42.2 bits (100), Expect = 6e-05
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 25 IAELTPTGVRFQDGSYEQVDIILYCTGY 52
I E+TP G++ D +Y+ +D+I+Y TG+
Sbjct: 363 IQEVTPEGIKTADAAYD-LDVIIYATGF 389
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 39.9 bits (94), Expect = 4e-04
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 18 NV----VKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 52
NV +K+ I E+T GV +DG ++D++++ TG+
Sbjct: 344 NVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGF 382
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 4e-04
Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 57/215 (26%)
Query: 25 IAELTPTGV----RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN-KNVQPLYKHL 79
IAE G+ ++ + +++ I+ ES + V+ + ++ L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTII-------------ESS-LNVLEPAEYRKMFDRL 378
Query: 80 ------INIEHPSMCII--GIPGDTVVFYMFDLQVRFFL--QLMKGYVTLPSKAEMLADT 129
+I + +I + V+ + L + Q + +++P
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-------SI 431
Query: 130 DQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESF-------A 182
+++ + + H ++ + Y ++ + +PP L + YF S
Sbjct: 432 YLELKVKLENEYALHRSIV----DHY--NIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNI 484
Query: 183 RRCEDFTAFRK---D----KYKIINEKVFVREPGA 210
E T FR D + KI ++ G+
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Score = 32.5 bits (73), Expect = 0.095
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 103 DLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHR-------KESQSTHTHVMHLRSEKY 155
+ + + K ++ ++ D R K+ + V + Y
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 156 LNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF------RKDKYKIINEKVFVREPG 209
L S ++ E P ++ ++Y E R D F R Y + + + P
Sbjct: 92 -KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Score = 31.7 bits (71), Expect = 0.20
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 65/189 (34%)
Query: 15 FPNNVVKKPDIAELTPTGV--RF-QDGSYEQVDIIL-----YC------TGYTYRYPFLH 60
FP + I PT + D V +++ Y T P ++
Sbjct: 381 FPPSA----HI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 61 ESCGIKVVNK--------------------NVQPLYK----------HLINIEHPSMCII 90
+K+ N+ ++ P Y HL NIEHP
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP----- 487
Query: 91 GIPGDTVVFYMFDLQVRFFLQLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHL 150
+F M L RF Q ++ T + + + +T Q ++ ++ +
Sbjct: 488 ---ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDNDP 539
Query: 151 RSEKYLNSL 159
+ E+ +N++
Sbjct: 540 KYERLVNAI 548
Score = 27.9 bits (61), Expect = 3.0
Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 29/107 (27%)
Query: 119 LPSKAE--------MLADTDQDIRAH----RKESQSTHTHVM-----HLRSE---KYLNS 158
LP + ++A++ +D A + + T ++ L K +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 159 LASMMRGESPVPPVLLKIYF--------ESFARRCEDFTAFRKDKYK 197
L+ + + +P +LL + + + ++ K +
Sbjct: 378 LS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 36.4 bits (85), Expect = 0.004
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 25 IAELTPTGVRFQDGSYEQVDIILYCTGY 52
I + TG+ Y+ +D+I+ TG+
Sbjct: 368 IVGMDETGIVTTGAHYD-LDMIVLATGF 394
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.8 bits (67), Expect = 0.74
Identities = 6/59 (10%), Positives = 14/59 (23%)
Query: 8 EHVKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIK 66
+ + + VK D S + TG+ + + +
Sbjct: 226 QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVT 284
>4dey_B Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 1vyt_E
Length = 106
Score = 27.8 bits (61), Expect = 1.1
Identities = 13/73 (17%), Positives = 29/73 (39%)
Query: 113 MKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPV 172
+KGY+ ++AE + ++D ++ ++ S N + GE+ +
Sbjct: 31 LKGYLDWITQAEDIDPENEDEGMDEEKPRNMSMPTSETESVNTENVAGGDIEGENCGARL 90
Query: 173 LLKIYFESFARRC 185
+I F+R
Sbjct: 91 AHRISKSKFSRYW 103
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 28.8 bits (65), Expect = 1.7
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 16 PNNVVKKPDIAELTPTGVRFQD----GSYEQVDIILY 48
+ V K AEL P+ D Y+ + I
Sbjct: 507 LHIVNKLAPTAELRPSEYTQTDERDLMPYDVLARIER 543
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 27.9 bits (63), Expect = 2.3
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 16 PNNVVKKPDIAELTPTGVRFQD---GSYEQVDIILYCTGYTY 54
P ++ KP A+L G + Y +D +L +
Sbjct: 174 PKKILNKPPSADLFV-GQSDEKDLGYPYSVIDPLLKDIEALF 214
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP;
2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 26.7 bits (59), Expect = 3.3
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 44 DIILYCTGY-----TYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCII 90
D +L T YRY L+ + VVN P K + + I
Sbjct: 35 DCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRI 86
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas
syringae PV. tomato STR. DC3000, structural genomics,
PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Length = 203
Score = 26.9 bits (60), Expect = 3.9
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 144 HTHVMHLRSEKYLNSLASMMRGESPVPPVLLKIYFESFARRCEDFTAF 191
+ +L +L LA ++ G + P +++ R E F+A+
Sbjct: 91 WGKMRNLTDSSFL-DLARVVVGATIHSPERAQVWLARINEREETFSAW 137
>1xly_A SHE2P, SHE2, YKL130C; basic helical hairpin, five helix bundle,
dimer, RNA- binding protein, RNA binding protein; 1.95A
{Saccharomyces cerevisiae} SCOP: a.232.1.1
Length = 234
Score = 27.0 bits (59), Expect = 4.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 8 EHVKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIIL 47
+ VKKLRF N+ V + +E G D + D ++
Sbjct: 52 KFVKKLRFYNDSVLSYNASEFINEGKNELDPEADSFDKVI 91
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 26.7 bits (60), Expect = 6.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 16 PNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLH----ESCGIKV 67
P VVK D LT + +DG E VD +++ G R P E+ G+K
Sbjct: 231 PKAVVKNTD-GSLT---LELEDGRSETVDCLIWAIG---REPANDNINLEAAGVKT 279
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 26.4 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 16 PNNVVKKPDIAELTPTGVRFQD---GSYEQVDIILYC 49
P +VKK A L G +D SY +D IL+
Sbjct: 171 PERIVKKKPSAGLWE-GQTDEDELGISYNLLDEILWR 206
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 26.4 bits (59), Expect = 8.1
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 33 VRFQDGSYEQVDIILYCTGYTYRYPFLH----ESCGIKV 67
V F+ G VD+++ G R P + + G+K+
Sbjct: 271 VTFESGKTLDVDVVMMAIG---RIPRTNDLQLGNVGVKL 306
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 26.4 bits (59), Expect = 8.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 16 PNNVVKKPDIAELTPTGVRFQD---GSYEQVDIILYC 49
N +KK A+L + SY ++D L
Sbjct: 175 HENFIKKAPSADLWE-NQSDEADLGFSYTKIDEGLKA 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.417
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,422,091
Number of extensions: 195941
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 33
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)