RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14914
(216 letters)
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 335
Score = 65.8 bits (159), Expect = 2e-13
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 3/144 (2%)
Query: 57 PFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMKGY 116
+ +V +Y+H+ I P++ +G+ V F Q F ++ G
Sbjct: 192 KLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGR 251
Query: 117 VTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASMMRGESPVPPVLL-- 174
+ LPSK E L D+ + + + H + + + Y+N L + +PV
Sbjct: 252 LKLPSKEEQLKWQDELMFSLSGANNMYH-SLDYPKDATYINKLHDWCKQATPVLEEEFPS 310
Query: 175 KIYFESFARRCEDFTAFRKDKYKI 198
+ E E+ + R + I
Sbjct: 311 PYWGEKERSIRENMWSIRAKFFGI 334
>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 235
Score = 42.5 bits (98), Expect = 1e-05
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 2 FLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 52
+ E + I +TP GVR + YE +D ++ TG+
Sbjct: 186 LEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSEREYE-LDSLVLATGF 235
>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 107
Score = 34.2 bits (78), Expect = 0.002
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 1 VFLSHHSEHVKKLRFPN-------NVVKKPDIAELTPTG--VRFQDGSYEQ-VDIILYC 49
L+ ++H ++ + P+I + PT + + G +D ++YC
Sbjct: 49 RHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 25.7 bits (56), Expect = 1.5
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 111 QLMKGYVTLPSKAEMLADTDQDIRAHRKESQSTHTHVMHLRSEKYLNSLASM 162
L+ G +K+ +L IR + +Q + LR+ ++ S+
Sbjct: 30 DLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA--VHKSKSL 79
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29
{Cryptosporidium parvum [TaxId: 5807]}
Length = 193
Score = 27.0 bits (59), Expect = 1.6
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 41 EQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGIPGDTVVF 99
++D + TG+T++ + E G +N + L PS ++ + G+ VV
Sbjct: 116 RRLDCDILVTGHTHK-LRVFEKNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVL 174
Query: 100 YMFDLQ 105
Y++DL+
Sbjct: 175 YVYDLR 180
>d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase
{Xanthomonas citri [TaxId: 346]}
Length = 381
Score = 26.3 bits (56), Expect = 3.5
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 47 LYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHL-INIEHPSMCIIGIPGDTVVFYMFDLQ 105
G + Y + +N V ++H +N + ++ + GDT + D+
Sbjct: 286 EDMWGAIHSYAAMEPRDKRNTLNYLVMGPWRHSQVNYDGSALGALNFEGDTARQFRHDVL 345
Query: 106 VRFFLQLMKG 115
FF Q +
Sbjct: 346 RPFFDQYLVD 355
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 25.9 bits (55), Expect = 3.6
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 1/115 (0%)
Query: 1 VFLSH-HSEHVKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFL 59
VFL+H H +H+ L N+ P V + +G+ + + F
Sbjct: 44 VFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFS 103
Query: 60 HESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPGDTVVFYMFDLQVRFFLQLMK 114
+K + P + +++F+++ + +
Sbjct: 104 FNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQG 158
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 25.4 bits (55), Expect = 6.1
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 171 PVLLKIYFESFARRCEDFTAFRKDKYKIIN 200
P +++ E+ R C++F ++D I++
Sbjct: 35 PFSIRVLLEAAIRNCDEFLVKKQDIENILH 64
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 182
Score = 24.8 bits (53), Expect = 7.9
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 41 EQVDIILYCTGYTYRYPFLHESCGIKVVNKN--VQPLYKHLINIEHPSMCIIGIPGDTVV 98
Q D+ + +G+T++ E +N NI PS ++ I TVV
Sbjct: 104 RQFDVDILISGHTHK-FEAFEHENKFYINPGSATGAYNALETNI-IPSFVLMDIQASTVV 161
Query: 99 FYMFDL 104
Y++ L
Sbjct: 162 TYVYQL 167
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 121
Score = 24.3 bits (52), Expect = 8.2
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 25 IAELTPTGVRFQDGSYEQVDIILYCTG 51
+ V DG+ D+++ G
Sbjct: 95 VTGSVDGVVLLDDGTRIAADMVVVGIG 121
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 23.9 bits (51), Expect = 9.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 33 VRFQDGSYEQVDIILYCTG 51
+ +DG E VD +++ G
Sbjct: 98 LELEDGRSETVDCLIWAIG 116
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding
protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 23.6 bits (51), Expect = 9.8
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 4 SHHSEHVKKLRFPNNVVKKPDIAELT 29
++ +L F + +P ++ L+
Sbjct: 13 LEKDAYIVRLVFAGSTTTEPIVSSLS 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.417
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 840,278
Number of extensions: 39084
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 16
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)