BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14915
(1046 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like
(Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like
(Ubl) Domain Of Dsk2
Length = 968
Score = 322 bits (826), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 259/865 (29%), Positives = 426/865 (49%), Gaps = 84/865 (9%)
Query: 246 NGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIAD------P---DYSKPLEALT 296
NG +++ + + ++ +S I+Q +A+ E + D P +Y +
Sbjct: 117 NGAFINYITGIVSNVNSYTDFLSQIIQ---RAILEGTALDLLNAVFPTLLEYCNKHVSHF 173
Query: 297 DLLEIRIGSNVWPVCSALVSQVQFQP--ELNTKAVG---------REIAVTSYLGPFFSI 345
DL E I +NV + V+ F+P E+ TK G ++ + LGP S+
Sbjct: 174 DLNESVIYNNVLTIFELFVT---FKPIAEIFTKIDGFFADYSCKPQDFERKTILGPILSL 230
Query: 346 SVFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGF----LYRICHTMLRNN-PTR 400
S E V + N+ L +K A + LQ L+ I ++R + +R
Sbjct: 231 SPI-EAAVAIRNY---GDNLLRSKQQTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSR 286
Query: 401 ETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSD--------KIDLFKV 452
M+ Y A + N R L+ +GFM N+ + S KID K+
Sbjct: 287 TDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKID--KI 344
Query: 453 DLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTLHCTHL 512
D Y N S + +TRL +E + + TA +P F S C+FLTL H
Sbjct: 345 DANY--FNNPSLFIDLSGETRLNSDFKEADAFYDKNRKTADSKPNFISDCFFLTLTYLHY 402
Query: 513 SLLPALA---KYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLS 569
L L+ K +++L++ + V ++++ + + + A+ L + + +K
Sbjct: 403 GLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQ-----LSKMEKALKTTE 457
Query: 570 RSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENLC--NITLPL-PSTVRPE--- 623
+ ++L + F + +L+RV+ E I LPL P + E
Sbjct: 458 SLRFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVD 517
Query: 624 ------------FAALPEWYVEDIAEFLLFALQY--IPGIEDVVEDRCVTWLLVTMCSPQ 669
F PE+ VE + L+ +Y P + V + + + P+
Sbjct: 518 NADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPE 577
Query: 670 MIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAH-KFSSQFLPSYLMKFYTDVETTGS 728
++ NP+L KL+++L + + + I H + ++ L L+ FY VE TGS
Sbjct: 578 LVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGS 637
Query: 729 SSEFYDKFTIRYHISLILKGMW-ESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDE 786
SS+FYDKF RY IS+IL+ ++ + P ++ I +S+ + FV+FV ++ND TFLLDE
Sbjct: 638 SSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARMLNDLTFLLDE 697
Query: 787 SLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQ--LAADERQCRSYLTLGRETVDMFH 844
L +L +H Q + D A A P ++ +E Q LA+ RQ +S L +++ +F
Sbjct: 698 GLSNLAEVHNIQNEL-DNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFE 756
Query: 845 YLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDI 904
+ +I F+ PE+VYRL++MLN+NL+ L GPKC LKV P Y ++P+ LL L +
Sbjct: 757 IYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTV 816
Query: 905 YLHL-DCDEFAAAIAQDERSFRKELFDDAADRMERRQILL-PSSLDKFRALASRAHEISV 962
Y++L + EF +A+A+DERSF + LF A D + R+ L P ++K A++A E
Sbjct: 817 YINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRK 876
Query: 963 ANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPL 1021
A+ +++++Y D PDEF DPLM T+M+DPV LP S + +DRS I HLL+ STDPF+R PL
Sbjct: 877 ADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPL 936
Query: 1022 FEDNLKPNEELKKKIEAWKREKIEK 1046
+++ PNEEL++KI +K++K E+
Sbjct: 937 KLEDVTPNEELRQKILCFKKQKKEE 961
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 322 bits (824), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 258/865 (29%), Positives = 425/865 (49%), Gaps = 84/865 (9%)
Query: 246 NGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADP---------DYSKPLEALT 296
NG +++ + + ++ +S I+Q +A+ E + D +Y +
Sbjct: 131 NGAFINYITGIVSNVNSYTDFLSQIIQ---RAILEGTALDLLNAVFPTLLEYCNKHVSHF 187
Query: 297 DLLEIRIGSNVWPVCSALVSQVQFQP--ELNTKAVG---------REIAVTSYLGPFFSI 345
DL E I +NV + V+ F+P E+ TK G ++ + LGP S+
Sbjct: 188 DLNESVIYNNVLTIFELFVT---FKPIAEIFTKIDGFFADYSCKPQDFERKTILGPILSL 244
Query: 346 SVFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGF----LYRICHTMLRNN-PTR 400
S E V + N+ L +K A + LQ L+ I ++R + +R
Sbjct: 245 SPI-EAAVAIRNY---GDNLLRSKQQTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSR 300
Query: 401 ETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSD--------KIDLFKV 452
M+ Y A + N R L+ +GFM N+ + S KID K+
Sbjct: 301 TDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKID--KI 358
Query: 453 DLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTLHCTHL 512
D Y N S + +TRL +E + + TA +P F S C+FLTL H
Sbjct: 359 DANY--FNNPSLFIDLSGETRLNSDFKEADAFYDKNRKTADSKPNFISDCFFLTLTYLHY 416
Query: 513 SLLPALA---KYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLS 569
L L+ K +++L++ + V ++++ + + + A+ L + + +K
Sbjct: 417 GLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQ-----LSKMEKALKTTE 471
Query: 570 RSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENLC--NITLPL-PSTVRPE--- 623
+ ++L + F + +L+RV+ E I LPL P + E
Sbjct: 472 SLRFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVD 531
Query: 624 ------------FAALPEWYVEDIAEFLLFALQY--IPGIEDVVEDRCVTWLLVTMCSPQ 669
F PE+ VE + L+ +Y P + V + + + P+
Sbjct: 532 NADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPE 591
Query: 670 MIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAH-KFSSQFLPSYLMKFYTDVETTGS 728
++ NP+L KL+++L + + + I H + ++ L L+ FY VE TGS
Sbjct: 592 LVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGS 651
Query: 729 SSEFYDKFTIRYHISLILKGMW-ESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDE 786
SS+FYDKF RY IS+IL+ ++ + P ++ I +S+ + FV+FV ++ND TFLLDE
Sbjct: 652 SSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARMLNDLTFLLDE 711
Query: 787 SLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQ--LAADERQCRSYLTLGRETVDMFH 844
L +L +H Q + D A A P ++ +E Q LA+ RQ +S L +++ +F
Sbjct: 712 GLSNLAEVHNIQNEL-DNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFE 770
Query: 845 YLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDI 904
+ +I F+ PE+VYRL++MLN+NL+ L GPKC LKV P Y ++P+ LL L +
Sbjct: 771 IYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTV 830
Query: 905 YLHL-DCDEFAAAIAQDERSFRKELFDDAADRMERRQILL-PSSLDKFRALASRAHEISV 962
Y++L + EF +A+A+DERSF + LF A D + R+ L P ++K A++A E
Sbjct: 831 YINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRK 890
Query: 963 ANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPL 1021
A+ +++++Y D PDEF DPLM T+M+DPV LP S + +DRS I HLL+ STDPF+R PL
Sbjct: 891 ADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPL 950
Query: 1022 FEDNLKPNEELKKKIEAWKREKIEK 1046
+++ PNEEL++KI +K++K E+
Sbjct: 951 KLEDVTPNEELRQKILCFKKQKKEE 975
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 308 bits (788), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 254/865 (29%), Positives = 417/865 (48%), Gaps = 84/865 (9%)
Query: 246 NGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIAD------P---DYSKPLEALT 296
NG +++ + + ++ +S I+Q +A+ E + D P +Y +
Sbjct: 131 NGAFINYITGIVSNVNSYTDFLSQIIQ---RAILEGTALDLLNAVFPTLLEYCNKHVSHF 187
Query: 297 DLLEIRIGSNVWPVCSALVSQVQFQP--ELNTKAVG---------REIAVTSYLGPFFSI 345
DL E I +NV + V+ F+P E+ TK G ++ + LGP S+
Sbjct: 188 DLNESVIYNNVLTIFELFVT---FKPIAEIFTKIDGFFADYSCKPQDFERKTILGPILSL 244
Query: 346 SVFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGF----LYRICHTMLRNN-PTR 400
S E V + N+ L +K A + LQ L+ I ++R + +R
Sbjct: 245 SPI-EAAVAIRNY---GDNLLRSKQQTAXIHESLQAEHKVVIDRLFFIVDKLVRGSLNSR 300
Query: 401 ETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSD--------KIDLFKV 452
+ Y A + N R L+ +GF N+ + S KID K+
Sbjct: 301 TDXISYFAHIANKNHLRRADHPPFKELSSNGFXSNITLLLVRFSQPFLDISYKKID--KI 358
Query: 453 DLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTLHCTHL 512
D Y N S + +TRL +E + + TA +P F S C+FLTL H
Sbjct: 359 DANY--FNNPSLFIDLSGETRLNSDFKEADAFYDKNRKTADSKPNFISDCFFLTLTYLHY 416
Query: 513 SLLPALA---KYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLS 569
L L+ K +++L++ + V ++++ + + + A+ L + + +K
Sbjct: 417 GLGGTLSFEEKXGSEIKALKEEIEKVKKIAANHDVFARFITAQ-----LSKXEKALKTTE 471
Query: 570 RSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENLC--NITLPL-PSTVRPE--- 623
+ ++L + F + +L+RV+ E I LPL P + E
Sbjct: 472 SLRFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVD 531
Query: 624 ------------FAALPEWYVEDIAEFLLFALQY--IPGIEDVVEDRCVTWLLVTMCSPQ 669
F PE+ VE + L+ +Y P + V + + P+
Sbjct: 532 NADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTXVLRCPE 591
Query: 670 MIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAH-KFSSQFLPSYLMKFYTDVETTGS 728
++ NP+L KL+++L + + + I H + ++ L L+ FY VE TGS
Sbjct: 592 LVSNPHLKGKLVQLLSVGAXPLTDNSPGFXXDIFEHDELVNKNLLYALLDFYVIVEKTGS 651
Query: 729 SSEFYDKFTIRYHISLILKGMW-ESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDE 786
SS+FYDKF RY IS+IL+ ++ + P ++ I +S+ + FV+FV +ND TFLLDE
Sbjct: 652 SSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARXLNDLTFLLDE 711
Query: 787 SLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQ--LAADERQCRSYLTLGRETVDMFH 844
L +L +H Q + D A A P ++ +E Q LA+ RQ +S L ++ +F
Sbjct: 712 GLSNLAEVHNIQNEL-DNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSXKLFE 770
Query: 845 YLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDI 904
+ +I F+ PE+VYRL++ LN+NL+ L GPKC LKV P Y ++P+ LL L +
Sbjct: 771 IYSKDIPAAFVTPEIVYRLASXLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTV 830
Query: 905 YLHL-DCDEFAAAIAQDERSFRKELFDDAADRMERRQILL-PSSLDKFRALASRAHEISV 962
Y++L + EF +A+A+DERSF + LF A D + R+ L P ++K A++A E
Sbjct: 831 YINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRK 890
Query: 963 ANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPL 1021
A+ +++++Y D PDEF DPL T+ +DPV LP S +DRS I HLL+ STDPF+R PL
Sbjct: 891 ADEEEDLEYGDVPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHLLSDSTDPFNRXPL 950
Query: 1022 FEDNLKPNEELKKKIEAWKREKIEK 1046
+++ PNEEL++KI +K++K E+
Sbjct: 951 KLEDVTPNEELRQKILCFKKQKKEE 975
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin
Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating
Enzyme
Length = 100
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 71/91 (78%)
Query: 953 LASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS 1012
A + EI N + E+DY+DAPDEFRDPLMDTLM DPV LPSG +MDRS+I+RHLLNS
Sbjct: 5 FAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP 64
Query: 1013 TDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
TDPF+RQ L E L+P ELK++I+AW REK
Sbjct: 65 TDPFNRQTLTESMLEPVPELKEQIQAWMREK 95
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 65/76 (85%)
Query: 968 EVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLK 1027
E+DY+DAPDEFRDPLMDTLM DPV LPSG VMDRS+I+RHLLNS TDPF+RQ L E L+
Sbjct: 5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLE 64
Query: 1028 PNEELKKKIEAWKREK 1043
P ELK++I+AW REK
Sbjct: 65 PVPELKEQIQAWMREK 80
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 966 KKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFED 1024
++E Y DA DEF DP+M TLM DPV LPS V +DRS I RHLL+ TDPF+R PL D
Sbjct: 11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70
Query: 1025 NLKPNEELKKKIEAWKREKIEK 1046
++PN ELK+KI+ W E+ ++
Sbjct: 71 QIRPNTELKEKIQRWLAERKQQ 92
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 986 LMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEELKKKIEAWKRE 1042
LM +P PSG+ DR I HL DP +R PL +D L PN +K+ I+A+ +E
Sbjct: 22 LMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 79
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 986 LMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEELKKKIEAWKRE 1042
LM +P PSG+ DR I HL DP +R PL +D L PN +K+ I+A+ +E
Sbjct: 115 LMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEE 1031
D PD + LM +P PSG+ DR I HL +P +R PL ++ L PN
Sbjct: 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 263
Query: 1032 LKKKIEAW 1039
+K+ I+A+
Sbjct: 264 MKEVIDAF 271
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An
Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNLKPNEELK 1033
P+ FR P+ LM+DPV + +G +RS I + L T P S++ L L PN LK
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 1034 KKIEAW 1039
I W
Sbjct: 66 SLIALW 71
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEE 1031
D PD + LM +P PSG+ DR I HL +P +R PL ++ L PN
Sbjct: 1 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 60
Query: 1032 LKKKIEAWKRE 1042
+K+ I+A+ E
Sbjct: 61 MKEVIDAFISE 71
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 163 VELQDILLSKNNTCVLGHYTASYARVFE 190
+E D+++S N+TCVLGH A ++F+
Sbjct: 44 METGDVIVSVNDTCVLGHTHAQVVKIFQ 71
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 163 VELQDILLSKNNTCVLGHYTASYARVFE 190
+E D+++S N+TCVLGH A ++F+
Sbjct: 62 METGDVIVSVNDTCVLGHTHAQVVKIFQ 89
>pdb|1MK0|A Chain A, Catalytic Domain Of Intron Endonuclease I-Tevi, E75a
Mutant
Length = 97
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 555 KDFLKRWKHQIKKLSRSKACADAGLLDKNLMKKSAVFYMSVAE 597
KDF KRWK K L K C + L ++ K VF S+ E
Sbjct: 22 KDFEKRWKRHFKDL--EKGCHSSIKLQRSFNKHGNVFECSILE 62
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 505 LTLHCT--HLSLLPALAKYQRRVRSLRDLQKLVDE 537
L + C+ HL+ LP + KY + VR + +LQK V++
Sbjct: 225 LQVSCSYDHLTTLPHVQKYLKSVRYIEELQKFVED 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,356,140
Number of Sequences: 62578
Number of extensions: 1126575
Number of successful extensions: 2802
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2765
Number of HSP's gapped (non-prelim): 18
length of query: 1046
length of database: 14,973,337
effective HSP length: 109
effective length of query: 937
effective length of database: 8,152,335
effective search space: 7638737895
effective search space used: 7638737895
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)