BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14915
(1046 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3
Length = 1173
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/880 (49%), Positives = 597/880 (67%), Gaps = 17/880 (1%)
Query: 175 TCVLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDPMS-- 232
T +L + + RV EE+ PK CS +L +R+Q + H+ LVLQ + + P S
Sbjct: 295 TDMLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQ 354
Query: 233 --SPLVKPLINQTLPNGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADPDYSK 290
S LV ++ + LP GF+ + V T ++DEE FKQ+ PILQG+ A E S+ +
Sbjct: 355 QPSFLVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLESDYFKY 414
Query: 291 PLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSISVFAE 350
PL AL +L E + G P+C+ + S + P+ + GRE+ SYLG FFS SVFAE
Sbjct: 415 PLMALGELCETKFG-KTHPMCNLVASLPLWLPKSLSPGSGRELQRLSYLGAFFSFSVFAE 473
Query: 351 DDVKVGNHFFS--SVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLRNNPTRETMLGYLA 408
DD KV +FS ++T N + + +LQ+ L+L R L++I H++L N TRE L Y+A
Sbjct: 474 DDAKVVEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMA 533
Query: 409 ALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNKSEMLSF 468
ALV N K+AQ+Q+++ ++ DGFMLNLL V Q LS KI L VD Y FHP ++
Sbjct: 534 ALVNANMKKAQMQADDRLVSTDGFMLNLLWVLQQLSTKIKLETVDPTYIFHPRCR--ITL 591
Query: 469 KND-TRLKMSSQEVEDWLASL--SSTAWREPKFSSTCWFLTLHCTHLSLLPALAKYQRRV 525
ND TR+ + ++V + L L + EPKF + C+FLTLH HLS+LP+ +Y RR+
Sbjct: 592 PNDETRINATMEDVNERLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRL 651
Query: 526 RSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADAGLLDKNLM 585
R++R+L + V++L + E W+ + +A R+++ LKR K Q+KKL R KACADAGLLD++ +
Sbjct: 652 RAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFL 711
Query: 586 KKSAVFYMSVAEYLLRVMTGEENLCNITLPLPSTVRPEFAALPEWYVEDIAEFLLFALQY 645
++ FY + + +LR++ + ++TLPL S V FAALPE+YVED+AEFL F +QY
Sbjct: 712 RRCLNFYGLLIQLMLRIL--DPAYPDVTLPLNSEVPKVFAALPEFYVEDVAEFLFFIVQY 769
Query: 646 IPGI--EDVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIM 703
P + E +D V +L+V +C+ I+NPYL+AKL+EV+F++NP VQ RT ++ I
Sbjct: 770 SPQVLYEPCTQD-IVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPSVQPRTQKFFEMIE 828
Query: 704 AHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPIHRQAFINES 763
H S++ L LMKFYTDVE TG++SEFYDKFTIRYHIS I K +W++ H F+ E
Sbjct: 829 NHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEF 888
Query: 764 KTGNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQLA 823
+G QFV+++NML+NDTTFLLDESLESLKRIHE QE M+++ + +P +QQ +R+ QLA
Sbjct: 889 NSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLA 948
Query: 824 ADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLK 883
DER RSYL L ETVDMFH LT ++++PFLRPEL RL+AMLNFNLQQLCGPKC LK
Sbjct: 949 QDERVSRSYLALATETVDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLK 1008
Query: 884 VSSPDKYGWDPRRLLNQLVDIYLHLDCDEFAAAIAQDERSFRKELFDDAADRMERRQILL 943
V +P+KYG++P++LL+QL DIYL LDC FA AIA D+RS+ KELF++ +M + I
Sbjct: 1009 VENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKS 1068
Query: 944 PSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSV 1003
+++KF+ LA + EI N + E+DY+DAPDEFRDPLMDTLM DPV LPSG VMDRS+
Sbjct: 1069 TIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSI 1128
Query: 1004 IVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
I+RHLLNS TDPF+RQ L E L+P ELK++I+AW REK
Sbjct: 1129 ILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 1168
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1
Length = 1302
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/880 (49%), Positives = 596/880 (67%), Gaps = 17/880 (1%)
Query: 175 TCVLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDPMS-- 232
T +L + + RV EE+ PK CS +L +R+Q + H+ LVLQ + + P S
Sbjct: 424 TDMLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQ 483
Query: 233 --SPLVKPLINQTLPNGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADPDYSK 290
S LV ++ + LP GF+ + V T ++DEE FKQ+ PILQG+ A E S+ D DY K
Sbjct: 484 QPSFLVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSL-DSDYFK 542
Query: 291 -PLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSISVFA 349
PL AL +L E + G PVC+ + S + P+ + GRE+ SYLG FFS SVFA
Sbjct: 543 YPLMALGELCETKFG-KTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFA 601
Query: 350 EDDVKVGNHFFS--SVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLRNNPTRETMLGYL 407
EDDVKV +FS ++T N + + +LQ+ L+L R L++I H++L N TRE L Y+
Sbjct: 602 EDDVKVVEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYM 661
Query: 408 AALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNKSEMLS 467
AA+V N K+AQ+Q+++ ++ DGFMLN L V Q LS KI L VD Y FHP ++
Sbjct: 662 AAVVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCR--IT 719
Query: 468 FKND-TRLKMSSQEVEDWLASL--SSTAWREPKFSSTCWFLTLHCTHLSLLPALAKYQRR 524
ND TR+ + ++V DWL L + EPKF + C+FLTLH HLS+LP+ +Y RR
Sbjct: 720 LPNDETRVNATMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRR 779
Query: 525 VRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADAGLLDKNL 584
+R++R+L + V++L + E W+ + +A R+++ LKR K Q+KKL R KACADAGLLD++
Sbjct: 780 LRAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESF 839
Query: 585 MKKSAVFYMSVAEYLLRVMTGEENLCNITLPLPSTVRPEFAALPEWYVEDIAEFLLFALQ 644
+++ FY + + L + + +ITLPL S V FAALPE+YVED+AEFL F +Q
Sbjct: 840 LRRCLNFYGLLIQ--LLLRILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQ 897
Query: 645 YIP-GIEDVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIM 703
Y P + + V +L+V +C+ I+NPYL+AKL+EV+F++NP VQ RT ++ I
Sbjct: 898 YSPQALYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIE 957
Query: 704 AHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPIHRQAFINES 763
H S++ L LMKFYTDVE TG++SEFYDKFTIRYHIS I K +W++ H F+ E
Sbjct: 958 NHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEF 1017
Query: 764 KTGNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQLA 823
+G QFV+++NML+NDTTFLLDESLESLKRIHE QE M+++ + +P +QQ +R+ QLA
Sbjct: 1018 NSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLA 1077
Query: 824 ADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLK 883
DER RSYL L ETVDMFH LT ++++PFLRPEL RL+AMLNFNLQQLCGPKC LK
Sbjct: 1078 QDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLK 1137
Query: 884 VSSPDKYGWDPRRLLNQLVDIYLHLDCDEFAAAIAQDERSFRKELFDDAADRMERRQILL 943
V +P+KYG++P++LL+QL DIYL LDC FA AIA D+RS+ KELF++ +M + I
Sbjct: 1138 VENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKS 1197
Query: 944 PSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSV 1003
+++KF+ LA + EI N + E+DY+DAPDEFRDPLMDTLM DPV LPSG +MDRS+
Sbjct: 1198 TIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSI 1257
Query: 1004 IVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
I+RHLLNS TDPF+RQ L E L+P ELK++I+AW REK
Sbjct: 1258 ILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREK 1297
>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans
GN=ufd-2 PE=2 SV=1
Length = 980
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 263/829 (31%), Positives = 419/829 (50%), Gaps = 48/829 (5%)
Query: 235 LVKPLINQTLPNGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIA-------DPD 287
K L+ T+ N FL V L +E + ++ ++ + I D
Sbjct: 167 FTKRLLEDTVSNVFLRTLVEYLASTDECDEDAITETFNPIFGILRSGIICQRFEDNKDEI 226
Query: 288 YSKPLEALTDLLEIRIGSNV-WPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSIS 346
+ L + LL IR+ SN P+ + LV++ F P + K GRE + S+LGPFFS
Sbjct: 227 VRQILRVMNLLLSIRLPSNGPRPLSNLLVNREDFLPTPSEKIQGREFGLMSFLGPFFSYG 286
Query: 347 VFAEDDVKVGNH--FFSSVTDLNNKSIQATLQNGLQL-----TRGFLYRICHTMLRNNPT 399
+ E + NH F D + L R L+++ + + +
Sbjct: 287 L--ESSARRPNHRVFVDCEEDARKYDGSVNTEQKLYFQRMDPIRTMLHQLMLPLASDQGS 344
Query: 400 RETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFH 459
R L ++A ++ N+ R + + S + D +M N L+V S+KIDL K+ + YPF
Sbjct: 345 RNKTLRWIATIISTNDIRTRSHYDPSDVLCDHYMTNFLSVMYMFSEKIDLSKIIVDYPFL 404
Query: 460 PNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWR--EPKFSSTCWFLTLHCTHLSLLPA 517
P S +++ +TRLKM +A S A R E FS+ C+FLT+ L + P
Sbjct: 405 P--SSLINISKETRLKMDESGA---VAFASQFADRPDEYHFSTVCFFLTIAAQRLVIPPL 459
Query: 518 LAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADA 577
+ + R L++L+ ++ L T G A K +H K +SR C
Sbjct: 460 MNQISEYSRHLKELKHKINALKEKLNTVSGFERAEVEKKLNYETEHW-KLMSRHLLCVKT 518
Query: 578 GLLDKNLMKKSAVFYMSVAEYLLRVMTGEENLCNITLPLPSTVRPEFAALPEWYVEDIAE 637
D LM S F +++L ++ +L LP+ V F ALPE+++ED +
Sbjct: 519 QAQDPALMASSMDFVDKQMKFILNLLCDNLDLLGDDSQLPTEVSQMFCALPEYFLEDALD 578
Query: 638 FLLFALQYIPGIEDVVEDRCVTW---LLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTR 694
F +FA+ G++ ++E R W L V IK+P+L++KL+ VL P
Sbjct: 579 FYIFAIS--NGMKLLME-RNADWISRLTVLFTQYHYIKSPFLVSKLVRVLSSIQPP---- 631
Query: 695 TSNLYDRIMAHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPI 754
L+ ++ + + + L ++KFY+D E G +FY+KF +R +I +L+ M E
Sbjct: 632 ---LWFNVVRLRMAQENLLMCMIKFYSDFEDNG---DFYEKFNVRGNIQYMLEKMEEDMF 685
Query: 755 HRQAFINESK-TGNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYAAIPAE 813
++ F++ ++ G +F++FVNM++ND T+ +DESL LK IH+ ++ M ++ + +
Sbjct: 686 YKGKFMDMARECGAEFIRFVNMVINDATWCIDESLSGLKSIHDVEKKMANKVEWDN--TD 743
Query: 814 QQLSRERQLAADE---RQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFN 870
Q++ R + L E R+ + +L + + + +TV EPF P L RL+AMLN N
Sbjct: 744 QEI-RNQDLGVYEEAKRKVKGWLGTAKSNLKLLLSITVNSPEPFRTPVLGERLAAMLNHN 802
Query: 871 LQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHLDCDEFAAAIAQDERSFRKELFD 930
L QL G K + LKV P YGW+PR ++ L+ IYL L+ F IA DER++ E F
Sbjct: 803 LSQLIGSKASELKVKDPRSYGWEPREFVSLLISIYLKLNMPAFVKYIAYDERTYSPEFFH 862
Query: 931 DAADRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDP 990
+A + M + I+ S L+ F LA + A + E +Y+D P+EF+DP+MD +M DP
Sbjct: 863 NAIECMRKNSIVGFSQLESFEHLAEDVKKEYEAKAELEEEYDDVPEEFKDPIMDAIMVDP 922
Query: 991 VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAW 1039
V LPSG VMDR+VI RHLL++ +PF+R PL + L P+ ELK KI+ W
Sbjct: 923 VKLPSGHVMDRAVIERHLLSTPNNPFNRAPLSHNELSPDSELKAKIQEW 971
>sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ufd2 PE=2 SV=1
Length = 1010
Score = 365 bits (936), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 247/746 (33%), Positives = 391/746 (52%), Gaps = 35/746 (4%)
Query: 322 PELNTKAVGREIAVTSYLGPFFSISVFAEDDVKVGNHFFSSVTDL---NNKSIQATLQNG 378
P N EI ++LG S+SVF +D V + +FS+ T+ N S ++L+
Sbjct: 273 PSWNPTNNAGEIEYKTFLGRISSLSVFTQD---VASRYFSNSTERSAQNISSSISSLKLT 329
Query: 379 LQLTRGFLYRICHTMLRNNPT-RETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLL 437
+ + L++I +T++R + + RE++L + A +V N KR +Q + D MLN
Sbjct: 330 MSTYQDVLFQIFNTLIRTSTSLRESVLDFFAMVVNANHKRQSIQVNHFDITSDACMLNFS 389
Query: 438 AVFQALSD---KIDLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWR 494
V LS+ I K+D + + ++ + K +T+L + E + S A
Sbjct: 390 HVLSRLSEPFLDIGCSKIDRVQVEYFRRNPRVDIKEETKLNADQKASESFY---SKPAEG 446
Query: 495 EPKFSSTCWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRN 554
F S +FL L H + ++ V+S+RD +KL + L + ++ G+ A R
Sbjct: 447 SNNFISDIFFLNLAFHHYGVNATFKALEQLVQSIRDSEKLKERLETEQQNMSGSFQATRL 506
Query: 555 KDFLKRWKHQIKKLSRSKA-CADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENL---C 610
L R ++ L RS C + L + +S F VA +L R+ G+ +
Sbjct: 507 TAQLSRLDQRLD-LDRSFVHCYEIMLTQTSDTSRSFSFLNFVAIWLSRLADGQSSTYPKM 565
Query: 611 NITLPLPSTVRPEFAALPEWYVEDIAEFLLFALQY------IPGIEDVVEDRCVTWLLVT 664
++LP F LPE+++E I +++L + + +E + E CV++L
Sbjct: 566 PLSLPFNENAPEAFKCLPEYFIETITDYMLSLFKTSSSTLTLHSLEPLCE-FCVSFL--- 621
Query: 665 MCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAHKFSSQFLPSYLMKFYTDVE 724
IKNPYL AKL E+L+ R+ L D + K ++++L LM FY ++E
Sbjct: 622 -TQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSKVATRWLLPALMAFYIEIE 680
Query: 725 TTGSSSEFYDKFTIRYHISLILKGMWESPIHRQAFINESKTGNQF-VKFVNMLMNDTTFL 783
+TG S++FYDKF IR++I + + +W+ P + E KT F VKFV +++ND T+L
Sbjct: 681 STGQSTQFYDKFNIRFYICEVFRTIWKQPAYFGKLEQEQKTNLPFFVKFVALMLNDATYL 740
Query: 784 LDESLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQLAADERQCRSYLTLGRETVDMF 843
LDE+L L IH Q L+ D + + Q S + LAA ERQ +Y LG ET+ M
Sbjct: 741 LDEALLKLTEIHNLQSLLADAISNSNSNQNVQES-QSNLAAAERQASTYCQLGNETIFML 799
Query: 844 HYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVD 903
T I + F E+V RL+AMLN+NLQ LCGPKC++LKV P KY ++ + LL+ + D
Sbjct: 800 KLFTSSIPKAFCAVEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFD 859
Query: 904 IYLHLDCDE--FAAAIAQDERSFRKELFDDAADRMERRQILLPSSLDKFRALASRAHEIS 961
+YL+L C+E F A+A D RS+ KE+F+ A M + + ++ + +R
Sbjct: 860 VYLNL-CNEPAFVEAVAHDGRSYSKEIFERATSIMTKHNLKSSFDIEAIKEFVNRVEAFR 918
Query: 962 VANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQP 1020
+ +E D D PD F DPLM T+M+DPV LP SG+ +DRS I HLL+ +TDPF+R P
Sbjct: 919 LQEATEEEDMGDIPDYFLDPLMFTIMKDPVVLPRSGISIDRSTIKAHLLSDATDPFNRTP 978
Query: 1021 LFEDNLKPNEELKKKIEAWKREKIEK 1046
L D++ PN+ L+++I + + K K
Sbjct: 979 LTLDDVTPNDTLREEINTFLKSKRNK 1004
>sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana
GN=PUB1 PE=1 SV=1
Length = 1038
Score = 364 bits (934), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 257/848 (30%), Positives = 433/848 (51%), Gaps = 74/848 (8%)
Query: 245 PNGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADPDYSKPLEALTDLLEIRIG 304
P GFL +F D ++ ++ + + + + S+ D+ PL AL L+ + +G
Sbjct: 181 PPGFLDEFFKD--SDFDSLDSILKELYEDLRSTVINVSVLG-DFQPPLRALKYLVSLPVG 237
Query: 305 SNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSISVFAEDDV-----KVGNHF 359
+ +LVS + P GR + +TS LGPFF IS ++ + VG
Sbjct: 238 AK------SLVSHEWWVPR-GAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQC 290
Query: 360 FSSVTDLNNKSIQA---TLQNGLQLTRGFLYRICHTMLRNNPTRETMLGYLAALVGHNEK 416
FS ++ + + T++N + + L+ + +L++ TRE +L +LA ++ N
Sbjct: 291 FSEASERRPADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANAS 350
Query: 417 RAQLQSEESTLAGDGFMLNLLAVFQALSDKI---DLFKVDLMYPFHPNKSEMLSFKNDTR 473
RA +Q + + A G +NL AV L + L K D + P + L + T
Sbjct: 351 RAHIQVDPVSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTA 410
Query: 474 LKMSSQEVEDWLA---------------------------SLSSTAWREPKFSST----- 501
L SS+EV +W+ S SS A + S+T
Sbjct: 411 LHASSEEVTEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNASGQNAKSATKYTFI 470
Query: 502 --CWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLK 559
C+F+T +L LL AL+ ++ + D+ + D L+ T + R + + + +
Sbjct: 471 CECFFMTARVLNLGLLKALSDFKHLAQ---DISRGEDNLA-TLKAMRDQAPSPQLELDIS 526
Query: 560 RWKHQIKKLSRSKACADAGLL-DKNLMKKSAVFYMSVAEYLLRVMTGEENLCNITLPLPS 618
R + +++ S+ K C +A +L D + ++++ FY + +L+ ++ G +PLPS
Sbjct: 527 RMEKELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGG------FKMPLPS 580
Query: 619 TVRPEFAALPEWYVEDIAEFLLFALQYIPGIEDVVEDRCVTWLLVTMCSPQMIKNPYLLA 678
T EF+ +PE +VED E L+FA + ++ V D + ++++ M SP+ ++NPYL A
Sbjct: 581 TCPMEFSCMPEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRA 640
Query: 679 KLIEVLFISNPDVQTRTSNLYDRIMAHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTI 738
K++EVL P + +S H+ S ++L L+K Y D+E TGS ++FYDKF I
Sbjct: 641 KMVEVLNCWMPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNI 700
Query: 739 RYHISLILKGMWESPIHRQAF--INESKTGNQFVKFVNMLMNDTTFLLDESLESLKRIHE 796
R++I+ +L+ +W+ P HR A+ I + + ++ F+N L+ND+ +LLDESL + I +
Sbjct: 701 RHNIAELLEYLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQ 760
Query: 797 TQELMRDEAAYAAIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLR 856
+ M + A + P +++ R R + E R + L E V M + + EI PFL
Sbjct: 761 IEADMSNTAEWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLL 820
Query: 857 PELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHL----DCDE 912
PE+V R++ MLN+ L QL GP+ L + P+KY + P++LL Q+V IY++L +
Sbjct: 821 PEMVERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNI 880
Query: 913 FAAAIAQDERSFRKELFDDAADRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYN 972
F AI+ D RS+ ++LF+ AD + RR + +F L ++A + + E
Sbjct: 881 FPGAISSDGRSYNEQLFNAGADVL-RRIGEEGRIIQEFMELGTKAKAAASEALDAEAALG 939
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEE 1031
+ PDEF DP+ TLM DPV LPS + +DR +I RHLL+ + DPF+R L D L P+ E
Sbjct: 940 EIPDEFLDPIQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIE 999
Query: 1032 LKKKIEAW 1039
LK KI+ +
Sbjct: 1000 LKAKIDEF 1007
>sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3
Length = 961
Score = 322 bits (826), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 258/865 (29%), Positives = 425/865 (49%), Gaps = 84/865 (9%)
Query: 246 NGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADP---------DYSKPLEALT 296
NG +++ + + ++ +S I+Q +A+ E + D +Y +
Sbjct: 110 NGAFINYITGIVSNVNSYTDFLSQIIQ---RAILEGTALDLLNAVFPTLLEYCNKHVSHF 166
Query: 297 DLLEIRIGSNVWPVCSALVSQVQFQP--ELNTKAVG---------REIAVTSYLGPFFSI 345
DL E I +NV + V+ F+P E+ TK G ++ + LGP S+
Sbjct: 167 DLNESVIYNNVLTIFELFVT---FKPIAEIFTKIDGFFADYSCKPQDFERKTILGPILSL 223
Query: 346 SVFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGF----LYRICHTMLRNN-PTR 400
S E V + N+ L +K A + LQ L+ I ++R + +R
Sbjct: 224 SPI-EAAVAIRNY---GDNLLRSKQQTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSR 279
Query: 401 ETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSD--------KIDLFKV 452
M+ Y A + N R L+ +GFM N+ + S KID K+
Sbjct: 280 TDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKID--KI 337
Query: 453 DLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTLHCTHL 512
D Y N S + +TRL +E + + TA +P F S C+FLTL H
Sbjct: 338 DANY--FNNPSLFIDLSGETRLNSDFKEADAFYDKNRKTADSKPNFISDCFFLTLTYLHY 395
Query: 513 SLLPALA---KYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLS 569
L L+ K +++L++ + V ++++ + + + A+ L + + +K
Sbjct: 396 GLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQ-----LSKMEKALKTTE 450
Query: 570 RSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENLC--NITLPL-PSTVRPE--- 623
+ ++L + F + +L+RV+ E I LPL P + E
Sbjct: 451 SLRFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVD 510
Query: 624 ------------FAALPEWYVEDIAEFLLFALQY--IPGIEDVVEDRCVTWLLVTMCSPQ 669
F PE+ VE + L+ +Y P + V + + + P+
Sbjct: 511 NADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPE 570
Query: 670 MIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAH-KFSSQFLPSYLMKFYTDVETTGS 728
++ NP+L KL+++L + + + I H + ++ L L+ FY VE TGS
Sbjct: 571 LVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGS 630
Query: 729 SSEFYDKFTIRYHISLILKGMW-ESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDE 786
SS+FYDKF RY IS+IL+ ++ + P ++ I +S+ + FV+FV ++ND TFLLDE
Sbjct: 631 SSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARMLNDLTFLLDE 690
Query: 787 SLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQ--LAADERQCRSYLTLGRETVDMFH 844
L +L +H Q + D A A P ++ +E Q LA+ RQ +S L +++ +F
Sbjct: 691 GLSNLAEVHNIQNEL-DNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFE 749
Query: 845 YLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDI 904
+ +I F+ PE+VYRL++MLN+NL+ L GPKC LKV P Y ++P+ LL L +
Sbjct: 750 IYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTV 809
Query: 905 YLHL-DCDEFAAAIAQDERSFRKELFDDAADRMERRQILL-PSSLDKFRALASRAHEISV 962
Y++L + EF +A+A+DERSF + LF A D + R+ L P ++K A++A E
Sbjct: 810 YINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRK 869
Query: 963 ANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPL 1021
A+ +++++Y D PDEF DPLM T+M+DPV LP S + +DRS I HLL+ STDPF+R PL
Sbjct: 870 ADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPL 929
Query: 1022 FEDNLKPNEELKKKIEAWKREKIEK 1046
+++ PNEEL++KI +K++K E+
Sbjct: 930 KLEDVTPNEELRQKILCFKKQKKEE 954
>sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2
Length = 1066
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 229/841 (27%), Positives = 388/841 (46%), Gaps = 75/841 (8%)
Query: 248 FLSDFVCTLYEDEE--TFKQVMSP---ILQGVYKAMTEASIADPDYSKPLEALTDLLEIR 302
FL + + L DEE TF +VM P IL G K + I L A D+L
Sbjct: 248 FLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKDLELCQIL-------LYAYLDIL--L 298
Query: 303 IGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSISVFAEDDVKVGNH-FFS 361
+ + V +Q + N + + + LG SIS + V NH +F
Sbjct: 299 YFTRQKDMAKVFVEYIQPKDPTNGQMYQKTL-----LGVILSISCLLKTPGVVENHGYFL 353
Query: 362 SVTDLNNKSIQATLQNGLQLTRGF---LYRICHTMLRNNP-TRETMLGYLAALVGHNEKR 417
+ + + + I+ N Q F +Y++ +L+ +P T+ +L +L + N R
Sbjct: 354 NPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNCLHANAGR 413
Query: 418 AQLQSEE------STLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNKSEMLSFKND 471
++ + + A D F LNL A L + + F+P + ++
Sbjct: 414 TKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTYCALKELNDE 473
Query: 472 TR----LKMSSQEVEDWLASLSSTAWREPKFSSTCWFLT--LHCTHLSLLPALAKYQRRV 525
R + M + E L A +EPKF +T L T +L + +
Sbjct: 474 ERKIKNVHMRGLDKETCLIP----AVQEPKFPQNYNLVTENLALTEYTLYLGFHRLHDQ- 528
Query: 526 RSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADAGLLDKNLM 585
+ K+ L + WR + + + Q ++L + + ++
Sbjct: 529 -----MVKINQNLHRLQVAWRDA--QQSSSPAADNLREQFERLMTIYLSTKTAMTEPQML 581
Query: 586 KKSAVFYMSVAEYLLRVMTGEENL--CNITLPLPSTVRPEFAALPEWYVEDIAEFLLFAL 643
+ +S+A L+++ G E +T PLP A +PE++ +++ +FL+F
Sbjct: 582 QNCLNLQVSMAVLLVQLAIGNEGSQPIELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLR 640
Query: 644 QYIPGIEDVVED---RCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYD 700
++ I + D + ++ + S + +KNP+L AKL EVL P + + L
Sbjct: 641 RFADDILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVS 700
Query: 701 RIMAHK---FSSQFLPSY---LMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPI 754
+ K + Q+ P L+K + D+E TG +F KF R + IL+ MW +
Sbjct: 701 SVFHRKRVFCNFQYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDT 760
Query: 755 HRQAFINESKTGNQ---------FVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEA 805
+R++ + + ++ F++F+N+LMND FLLDE+++ L +I + Q++ +D
Sbjct: 761 YRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKI-KIQQIEKDRG 819
Query: 806 AYAAIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSA 865
+ ++ E + +E L + R + + ET+ +LT EIK F+ P L R+ +
Sbjct: 820 EWDSLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIIS 879
Query: 866 MLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHL-DCDEFAAAIAQDERSF 924
MLN+ LQ L GPK LKV ++ + P++L++ + IYL+L D + F A + +D RS+
Sbjct: 880 MLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSY 939
Query: 925 RKELFDDAADRMERRQILLPSSLD-KFRALASRAHEISVANIKKEVDYNDAPDEFRDPLM 983
LF + ++I P ++ F LA R ++ ++E Y DA DEF DP+M
Sbjct: 940 SPTLFAQTVRVL--KKINKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIM 997
Query: 984 DTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKRE 1042
TLM DPV LPS V +DRS I RHLL+ TDPF+R PL D ++PN ELK+KI+ W E
Sbjct: 998 STLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 1057
Query: 1043 K 1043
+
Sbjct: 1058 R 1058
>sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1
Length = 1067
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 205/746 (27%), Positives = 353/746 (47%), Gaps = 54/746 (7%)
Query: 337 SYLGPFFSISVFAEDDVKVGNH-FFSSVTDLNNKSIQATLQNGLQLTRGF---LYRICHT 392
+ LG +IS + + NH +F + + + + I+ N Q + +Y++
Sbjct: 328 TLLGVILNISCLLKTPGVIENHGYFLNPSRSSPQEIKVQEANIHQFMARYHEKIYQMLKN 387
Query: 393 MLRNNP-TRETMLGYLAALVGHNEKRAQLQSEE------STLAGDGFMLNLLAVFQALSD 445
+L+ +P T+ +L +L + N R ++ + + A D F LNL A L
Sbjct: 388 LLQLSPETKHCILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQ 447
Query: 446 KIDLFKVDLMYPFHPNKSEMLSFKNDTR----LKMSSQEVEDWLASLSSTAWREPKFSST 501
+ + F+P + ++ R + M + E L A +EPKF
Sbjct: 448 PFCKPRSSRLLTFNPTYCALKELNDEERKIKNVHMRGLDKETCLIP----AVQEPKFPQN 503
Query: 502 CWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRW 561
+T + +L Y R + K+ L + WR + +
Sbjct: 504 YNLVTENL----VLTEYTLYLGFHRLHDQMVKINQNLHRLQVAWRDA--QQSSSPAADNL 557
Query: 562 KHQIKKLSRSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEEN--LCNITLPLPST 619
+ Q ++L + + +++ +S+A L+++ G E L +T PLP
Sbjct: 558 REQFERLMTVYLSTKTAMTEPQMLQNCLNLQVSMAVLLVQLAIGNEGSQLMELTFPLPDG 617
Query: 620 VRPEFAALPEWYVEDIAEFLLFALQYIPGIEDVVED---RCVTWLLVTMCSPQMIKNPYL 676
A +PE++ +++ +FL+F ++ I + D + ++ + S + +KNP+L
Sbjct: 618 YS-SLAYVPEFFADNLGDFLIFLRRFADDILETSADSLEHVLHFITIFTGSIERMKNPHL 676
Query: 677 LAKLIEVLFISNPDVQTRTSNLYDRIMAHK-------FSSQFLPSYLMKFYTDVETTGSS 729
AKL EVL P + + L + K ++S L L+K + D+E TG
Sbjct: 677 RAKLAEVLEAVMPHMDQTPNPLVSSVFHRKRVFCNFPYASH-LAEALIKVFVDIEFTGDP 735
Query: 730 SEFYDKFTIRYHISLILKGMWESPIHRQAFINESKTGNQ---------FVKFVNMLMNDT 780
+F KF R + ILK MW + +R++ + + ++ F++F+N+LMND
Sbjct: 736 HQFEQKFNYRRPMYPILKYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDA 795
Query: 781 TFLLDESLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQLAADERQCRSYLTLGRETV 840
FLLDE+++ L +I + Q++ +D + + E + +E L + R + + ET+
Sbjct: 796 IFLLDEAIQYLSKI-KIQQIEKDRGEWDNLTPEARREKEAGLQMFGQLARFHNIMSNETI 854
Query: 841 DMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQ 900
+LT EIK F+ P L R+ +MLN+ LQ L GPK LKV ++ + P++L++
Sbjct: 855 GTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSD 914
Query: 901 LVDIYLHL-DCDEFAAAIAQDERSFRKELFDDAADRMERRQILLPSSLD-KFRALASRAH 958
+ IYL+L D + F A + +D RS+ LF + ++I P ++ F LA R
Sbjct: 915 ICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVL--KKINKPGNMIVAFSNLAERIK 972
Query: 959 EISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFS 1017
++ ++E Y DA DEF DP+M TLM DPV LPS V +DRS I RHLL+ TDPF+
Sbjct: 973 SLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVTVDRSTIARHLLSDQTDPFN 1032
Query: 1018 RQPLFEDNLKPNEELKKKIEAWKREK 1043
R PL D ++PN ELK+KI+ W E+
Sbjct: 1033 RSPLTMDQIRPNTELKEKIQRWLAER 1058
>sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2
Length = 1066
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 228/841 (27%), Positives = 388/841 (46%), Gaps = 75/841 (8%)
Query: 248 FLSDFVCTLYEDEE--TFKQVMSP---ILQGVYKAMTEASIADPDYSKPLEALTDLLEIR 302
FL + + L DEE TF +VM P IL G K + I L A D+L
Sbjct: 248 FLEEVIEALILDEEVRTFSEVMIPVFDILLGRIKDLELCQIL-------LYAYLDIL--L 298
Query: 303 IGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSISVFAEDDVKVGNH-FFS 361
+ + V +Q + N + + + LG +IS + V NH +F
Sbjct: 299 YFTRQKDMAKVFVEYIQPKDPTNGQMYQKTL-----LGVILNISCLLKTPGVVENHGYFL 353
Query: 362 SVTDLNNKSIQATLQNGLQLTRGF---LYRICHTMLRNNP-TRETMLGYLAALVGHNEKR 417
+ + + + I+ N Q F +Y++ +L+ +P T+ +L +L + N R
Sbjct: 354 NPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNCLHANAGR 413
Query: 418 AQLQSEE------STLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNKSEMLSFKND 471
++ + + A D F LNL A L + + F+P + ++
Sbjct: 414 TKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTYCALKELNDE 473
Query: 472 TR----LKMSSQEVEDWLASLSSTAWREPKFSSTCWFLT--LHCTHLSLLPALAKYQRRV 525
R + M + E L A +EPKF +T L T +L + +
Sbjct: 474 ERKIKNVHMRGLDKETCLIP----AVQEPKFPQNYNLVTENLALTEYTLYLGFHRLHDQ- 528
Query: 526 RSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADAGLLDKNLM 585
+ K+ L + WR + + + Q ++L + + ++
Sbjct: 529 -----MVKINQNLHRLQVAWRDA--QQSSSPAADSLREQFERLMTIYLSTKTAMTEPQML 581
Query: 586 KKSAVFYMSVAEYLLRVMTGEENL--CNITLPLPSTVRPEFAALPEWYVEDIAEFLLFAL 643
+ +S+A L+++ G E +T PLP A +PE++ +++ +FL+F
Sbjct: 582 QNCLNLQVSMAVLLVQLAIGNEGSQPIELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLR 640
Query: 644 QYIPGIEDVVED---RCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYD 700
++ I + D + ++ + S + +KNP+L AKL EVL P + + L
Sbjct: 641 RFADDILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVS 700
Query: 701 RIMAHK---FSSQFLPSY---LMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPI 754
+ K + Q+ P L+K + D+E TG +F KF R + IL+ MW +
Sbjct: 701 SVFHRKRVFCNFQYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDT 760
Query: 755 HRQAFINESKTGNQ---------FVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEA 805
+R++ + + ++ F++F+N+LMND FLLDE+++ L +I + Q++ +D
Sbjct: 761 YRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKI-KIQQIEKDRG 819
Query: 806 AYAAIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSA 865
+ ++ E + +E L + R + + ET+ +LT EIK F+ P L R+ +
Sbjct: 820 EWDSLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIIS 879
Query: 866 MLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHL-DCDEFAAAIAQDERSF 924
MLN+ LQ L GPK LKV ++ + P++L++ + IYL+L D + F A + +D RS+
Sbjct: 880 MLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSY 939
Query: 925 RKELFDDAADRMERRQILLPSSLD-KFRALASRAHEISVANIKKEVDYNDAPDEFRDPLM 983
LF + ++I P ++ F LA R ++ ++E Y DA DEF DP+M
Sbjct: 940 SPTLFAQTVRVL--KKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIM 997
Query: 984 DTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKRE 1042
TLM DPV LPS V +DRS I RHLL+ TDPF+R PL D ++PN ELK+KI+ W E
Sbjct: 998 STLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 1057
Query: 1043 K 1043
+
Sbjct: 1058 R 1058
>sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2
SV=1
Length = 1066
Score = 246 bits (627), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 209/758 (27%), Positives = 358/758 (47%), Gaps = 78/758 (10%)
Query: 337 SYLGPFFSISVFAEDDVKVGNH-FFSSVTDLNNKSIQATLQNGLQLTRGF---LYRICHT 392
+ LG +IS + V NH FF + + + + I+ N Q F +Y++
Sbjct: 328 TLLGVILNISCLLKTPGVVENHGFFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKN 387
Query: 393 MLRNNP-TRETMLGYLAALVGHNEKRAQLQSEE------STLAGDGFMLNLLAVFQALSD 445
+L+ +P T+ +L +L + N R ++ + + A D F LNL A
Sbjct: 388 LLQLSPETKHGILFWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAAL----- 442
Query: 446 KIDLFKVDLMYPF-HPNKSEMLSFK---------NDTRLKMSSQEVEDW-LASLSSTAWR 494
+ L PF P S +L+F ND K+ S + + A +
Sbjct: 443 ------LKLCQPFCKPRSSRLLTFNPTYCVLKDLNDEERKIKSVHMRGLDKETCLIPAVQ 496
Query: 495 EPKFSSTCWFLT--LHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIAR 552
EP F + +T L T +L + + + K+ L + WR +
Sbjct: 497 EPVFPQSYNLVTENLALTEYTLYLGFHRLHDQ------MVKINQNLHRLQVAWRDA--QQ 548
Query: 553 RNKDFLKRWKHQIKKLSRSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENL--C 610
+ + Q ++L + + +++ +S+A L+++ G E
Sbjct: 549 SSSPAADNLREQFERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAVLLVQLAIGNEGSQPI 608
Query: 611 NITLPLPSTVRPEFAALPEWYVEDIAEFLLFALQYIPGIEDVVE------DRCVTWLLVT 664
++ PLP A +PE++ +++ +FL+F ++ ED++E + + ++ +
Sbjct: 609 ELSFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---EDILETSADSLEHVLHFITIF 664
Query: 665 MCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAHK-------FSSQFLPSYLM 717
S + +KNP+L AKL EVL P + S L + K ++ Q L L+
Sbjct: 665 TGSIERMKNPHLRAKLAEVLEAVMPHLDQTPSPLVSSVFHRKRVFCNFPYAPQ-LSEALI 723
Query: 718 KFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPIHRQAFINESKTGNQ--------- 768
K + D+E TG +F KF R + IL+ MW + +R++ + + ++
Sbjct: 724 KVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDSYRESIKDLADYASKNLEAMNPPL 783
Query: 769 FVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQLAADERQ 828
F++F+N+LMND FLLDE+++ L +I + Q++ +D + ++ E + +E L +
Sbjct: 784 FLRFLNLLMNDAIFLLDEAIQYLSKI-KIQQIEKDRGEWESLTPEARREKEAGLQMFGQL 842
Query: 829 CRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPD 888
R + + ET+ +LT EIK F+ P L R+ +MLN+ LQ L GPK LKV
Sbjct: 843 ARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFS 902
Query: 889 KYGWDPRRLLNQLVDIYLHL-DCDEFAAAIAQDERSFRKELFDDAADRMERRQILLPSSL 947
++ + P++L++ + IYL+L D + F A + +D RS+ LF + ++I P ++
Sbjct: 903 EFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVL--KKINKPGNM 960
Query: 948 D-KFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIV 1005
F LA R ++ ++E Y DA DEF DP+M TLM DPV LPS V +D S I
Sbjct: 961 IVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVTVDGSTIA 1020
Query: 1006 RHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
RHLL+ TDPF+R PL D ++PN ELK+KI+ W E+
Sbjct: 1021 RHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 1058
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELK 1033
PDEFR P+ LM+DPV + SG +RS I + L + T P ++QPL +L PN LK
Sbjct: 229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLK 288
Query: 1034 KKIEAW 1039
I W
Sbjct: 289 SLISQW 294
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVR--HLLNSSTDPFSRQPLFEDNLKPNEEL 1032
P FR P+ LM+DPVT+ +G DR+ I + N++T P +R PL + L PN L
Sbjct: 15 PYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNHTL 74
Query: 1033 KKKIEAW 1039
++ I+ W
Sbjct: 75 RRLIQEW 81
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPL-FEDNLKPNEE 1031
+ P+ F P+ +M+DPVT SG+ DR IV+ L + P ++QPL + +L PN
Sbjct: 9 EIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVPSCPVTKQPLPLDSDLTPNHM 68
Query: 1032 LKKKIEAW 1039
L++ I+ W
Sbjct: 69 LRRLIQHW 76
>sp|Q5ZHY5|CHIP_CHICK STIP1 homology and U box-containing protein 1 OS=Gallus gallus
GN=STUB1 PE=2 SV=1
Length = 314
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEE 1031
D PD + LM +P PSG+ DR I HL DP +R PL +D L PN
Sbjct: 237 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 296
Query: 1032 LKKKIEAW 1039
+K+ I+A+
Sbjct: 297 MKEVIDAF 304
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34
PE=3 SV=1
Length = 801
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 956 RAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDP 1015
R E + + +KKE AP + P++ +ME+P G +R I+ L + P
Sbjct: 707 RLVETANSKVKKEGSNLRAPSHYFCPILREIMEEPEIAADGFTYERKAILAWLEKHNISP 766
Query: 1016 FSRQPLFEDNLKPNEELKKKIEAWK 1040
+RQ L L PN L+ I WK
Sbjct: 767 VTRQKLDHFKLTPNHTLRSAIRDWK 791
>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30
PE=2 SV=1
Length = 448
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 967 KEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDN 1025
KE+D D P F P+ M+DPVTL +G +R I + L T P + Q L++D
Sbjct: 57 KELDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDT 116
Query: 1026 LKPNEELKKKIEAWKREK 1043
+ PN+ L I W +K
Sbjct: 117 VTPNKTLHHLIYTWFSQK 134
>sp|Q9UNE7|CHIP_HUMAN E3 ubiquitin-protein ligase CHIP OS=Homo sapiens GN=STUB1 PE=1 SV=2
Length = 303
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEE 1031
D PD + LM +P PSG+ DR I HL DP +R PL ++ L PN
Sbjct: 226 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLA 285
Query: 1032 LKKKIEAW 1039
+K+ I+A+
Sbjct: 286 MKEVIDAF 293
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTD--PFSRQPLFEDNLKPNE 1030
+ P F P+ +M+DPV + +G+ DR I + L + + P ++Q + E +L PN
Sbjct: 6 EIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDLTPNH 65
Query: 1031 ELKKKIEAW 1039
L++ I++W
Sbjct: 66 TLRRLIQSW 74
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELK 1033
P FR PL LM DPV + SG DR+ I + L N + P +RQ L L PN +K
Sbjct: 239 PPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTVK 298
Query: 1034 KKIEAW 1039
I +W
Sbjct: 299 AMIASW 304
>sp|Q9WUD1|CHIP_MOUSE STIP1 homology and U box-containing protein 1 OS=Mus musculus
GN=Stub1 PE=1 SV=1
Length = 304
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEE 1031
D PD + LM +P PSG+ DR I HL DP +R PL ++ L PN
Sbjct: 227 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLA 286
Query: 1032 LKKKIEAW 1039
+K+ I+A+
Sbjct: 287 MKEVIDAF 294
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNLKPNEELK 1033
P FR P+ LM DPVT+ +G DR+ I + + ++T P +R L + L PN L+
Sbjct: 15 PYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLIPNHTLR 74
Query: 1034 KKIEAW 1039
+ I+ W
Sbjct: 75 RLIQEW 80
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 971 YNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNLKPN 1029
YN PDEF P+ +M+DPV G +R I + + T P + PL L PN
Sbjct: 414 YNGTPDEFLCPITREIMKDPVIAADGYSYEREAIEAWISTKNRTSPMTNLPLQTTLLTPN 473
Query: 1030 EELKKKIEAWKREK 1043
LK I W +
Sbjct: 474 RTLKMAIFRWSTSQ 487
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS-TDPFSRQPLFEDNLKPNEELK 1033
P+EFR PL + LM DPV L SG D+ I + L + + T P ++Q L L PN ++
Sbjct: 75 PEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIR 134
Query: 1034 KKIEAW 1039
+ I W
Sbjct: 135 EMISKW 140
>sp|Q3E9F5|PUB48_ARATH U-box domain-containing protein 48 OS=Arabidopsis thaliana GN=PUB48
PE=2 SV=1
Length = 456
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 922 RSFRKELFDDAADRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYN--DAPDEFR 979
R +K L ++ D + ++ S+D+ + +R + K+E D + + P EF+
Sbjct: 20 RELKKVLTENLNDGGVKDRVETVKSIDEAIRILNRLKIVESKKRKRESDSSSVEVPKEFK 79
Query: 980 DPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAW 1039
L T+M DPV + SG ++ I L + T P ++Q L+ L PN + + I W
Sbjct: 80 CTLSKTIMIDPVIIFSGQTYEKRYITEWLNHDLTCPTAKQVLYRVCLTPNHLINELITRW 139
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 934 DRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTL 993
DR + + +LP+ L+ + +A +A S + + + P F PL+ +M +P
Sbjct: 733 DRPDLKDQILPA-LENLKKVAEKARN-SFSGVSTQ-----PPTHFICPLLKDVMNEPCVA 785
Query: 994 PSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWK 1040
G DR I L +T P + PL NL PN L I W+
Sbjct: 786 ADGYTYDRHAIEEWLKEHNTSPMTDSPLHSKNLLPNYTLYTAIMEWR 832
>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31
PE=2 SV=1
Length = 444
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 968 EVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNL 1026
E++ + P F P+ M+DPVTL +G +RS I++ + T P + Q L++D +
Sbjct: 54 ELELPEIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLV 113
Query: 1027 KPNEELKKKIEAWKREK 1043
PN+ L + I W +K
Sbjct: 114 TPNKTLHQLIYTWFSQK 130
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELK 1033
PD+FR P+ +M DPV + SG +R+ I + + ST P ++Q L L PN L+
Sbjct: 257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLR 316
Query: 1034 KKIEAW 1039
I W
Sbjct: 317 SLIAQW 322
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELK 1033
P EF P+ LM DPV +G DR I++ + ST P S Q L + L PN L+
Sbjct: 298 PKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRALR 357
Query: 1034 KKIEAW 1039
I W
Sbjct: 358 SLISQW 363
>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27
PE=2 SV=1
Length = 420
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 974 APDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNLKPNEEL 1032
P FR P+ +M+ PV+L +GV DR+ I R L ++T P + Q L + PN L
Sbjct: 10 VPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIPNRTL 69
Query: 1033 KKKIEAW 1039
++ IE W
Sbjct: 70 QRLIEIW 76
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS--TDPFSRQPLFEDNLKPNEEL 1032
P EF+ P+ LM+DPV + +G+ DR V + +NS T P + L + PN +
Sbjct: 32 PPEFQCPISIDLMKDPVIISTGITYDR-VSIETWINSGNKTCPVTNTVLTTFDQIPNHTI 90
Query: 1033 KKKIEAWKREK 1043
+K I+ W EK
Sbjct: 91 RKMIQGWCVEK 101
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 934 DRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYN-DAPDEFRDPLMDTLMEDPVT 992
DR + + +LP L++ + +AS A + N+ +D++ +AP F P+ +ME+P
Sbjct: 688 DRPDLGKEILPV-LERLKEVASIARNMFADNL---IDHHHNAPTHFYCPITKDVMENPCV 743
Query: 993 LPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKIE 1045
G ++ I L + P + P D+L PN L I+ W+ + I+
Sbjct: 744 ASDGYTYEKRAIKEWLQKNHKSPMTDLPFPSDSLLPNHSLLSAIKEWRSQLIK 796
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKK 1034
P F PL+ +M++P G DR I + N T P + PL NL PN L
Sbjct: 750 PSHFFCPLLKDVMKEPCIAADGYTYDRRAIEEWMENHRTSPVTNSPLQNVNLLPNHTLYA 809
Query: 1035 KIEAWK 1040
I W+
Sbjct: 810 AIVEWR 815
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTD--PFSRQPLFEDNLKPNEEL 1032
P++F+ L T+M DPV + SG +R + ++ + D P S++ L + LKPN EL
Sbjct: 220 PEKFKCTLSRTVMYDPVIISSGNTFER-MQIQKWFDEGNDSCPISKRKLDDFTLKPNVEL 278
Query: 1033 KKKIEAW 1039
K +I W
Sbjct: 279 KSQISEW 285
>sp|Q5ZRQ0|LUBX_LEGPH E3 ubiquitin-protein ligase LubX OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=lubX PE=1 SV=1
Length = 246
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 981 PLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEEL 1032
P+ ++DPV P G V ++S I++ L DP SR+PL +L+P EL
Sbjct: 44 PIDSGFLKDPVITPEGFVYNKSSILKWLETKKEDPQSRKPLTAKDLQPFPEL 95
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTD--PFSRQPLFEDNLKPNE 1030
+ P F P+ +M+DPV + +G+ DR I + L + P ++Q + + +L PN
Sbjct: 11 EIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLTPNH 70
Query: 1031 ELKKKIEAW 1039
L++ I++W
Sbjct: 71 TLRRLIQSW 79
>sp|Q5X159|LUBX_LEGPA E3 ubiquitin-protein ligase LubX OS=Legionella pneumophila (strain
Paris) GN=lubX PE=3 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 981 PLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEEL 1032
P+ ++DPV P G V ++S I++ L DP SR+PL +L+P EL
Sbjct: 38 PIDSGFLKDPVITPEGFVYNKSSILKWLETKKEDPQSRKPLTAKDLQPFPEL 89
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELK 1033
PDEFR P+ LM+DPV + +G +R+ I + + + T P ++Q + L PN L+
Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333
Query: 1034 KKIEAW 1039
I W
Sbjct: 334 SLISQW 339
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELK 1033
PDEFR P+ LM+DPV + +G +R+ I + + + T P ++Q + L PN L+
Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333
Query: 1034 KKIEAW 1039
I W
Sbjct: 334 SLISQW 339
>sp|Q9SRS9|CHIP_ARATH E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1
SV=1
Length = 278
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 967 KEVDYNDAPDEFRDPLMDTL----MEDPVTLPSGVVMDRSVIVRHLLNSST-DPFSRQPL 1021
K+ D P E D L + DPV PSGV +R+ I+ HL DP +R+ +
Sbjct: 189 KKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKKVGKFDPITREKI 248
Query: 1022 FEDNLKPNEELKKKIEAW 1039
NL PN +K+ + A+
Sbjct: 249 DPANLVPNLAIKEAVAAY 266
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNLKPNEELK 1033
P+ FR P+ LM+DPV + +G +RS I + L T P S++ L L PN LK
Sbjct: 249 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 308
Query: 1034 KKIEAW 1039
I W
Sbjct: 309 SLIALW 314
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 934 DRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTL 993
DR + + ++P+ L++ R +A +A + + P F PL+ +M +P
Sbjct: 742 DRPDLKDQIIPA-LERLRKVADKAQNLLSRTP------SGPPSHFICPLLKGVMNEPCVA 794
Query: 994 PSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
G DR I L T P + PL NL N L I WK K
Sbjct: 795 ADGYTYDREAIEEWLRQKDTSPVTNLPLPNKNLIANYTLYSAIMEWKSNK 844
>sp|O94941|RNF37_HUMAN RING finger protein 37 OS=Homo sapiens GN=UBOX5 PE=2 SV=1
Length = 541
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 32/151 (21%)
Query: 890 YGWDPRRLLNQLVDIYLHLDCDEFAAAIAQDERSFRKELFDDAADRMERRQILLPSSLDK 949
+G + +++D L + + +A + E D D+ E +Q PSSL K
Sbjct: 194 WGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQPESQQA--PSSLQK 251
Query: 950 FRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLL 1009
+ D P+EF DP+ +M P+ LPSG V+D+S + +
Sbjct: 252 LAEI-----------------IQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNR 294
Query: 1010 NSST------DPFS-------RQPLFEDNLK 1027
+ +T DPF+ QPL +LK
Sbjct: 295 SEATWGRVPSDPFTGVAFTPHSQPLPHPSLK 325
>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45
PE=1 SV=1
Length = 768
Score = 40.4 bits (93), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 929 FDDAADRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLME 988
DDA R RQ+ SS + FR S N ++ + P+E R P+ LM
Sbjct: 244 IDDAHGRAFDRQLSKLSSFN-FR---------SCNNNRRSSQMSVPPEELRCPISLQLMY 293
Query: 989 DPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELKKKIEAW 1039
DPV + SG +R I + + +T P + Q L L PN +K I +W
Sbjct: 294 DPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSW 345
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 954 ASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-S 1012
S+ I V + +EV+ P +F+ P+ LM+DPV + SG+ DR I + +
Sbjct: 14 VSKKEIIPVTSCSEEVEIT-IPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQ 72
Query: 1013 TDPFSRQPLFEDNLKPNEELKKKIEAW 1039
T P + L PN +++ I+ W
Sbjct: 73 TCPVTNTVLTSLEQIPNHTIRRMIQGW 99
>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16
PE=2 SV=1
Length = 674
Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 956 RAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STD 1014
R +S ANI P +FR P+ LM DPV + +G DR I + + +T
Sbjct: 265 RHQSLSDANI---------PADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTC 315
Query: 1015 PFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
P + Q L +L PN LK I W R++
Sbjct: 316 PKTGQVLKHTSLVPNRALKNLIVLWCRDQ 344
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 40.0 bits (92), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELK 1033
P +F P+ LM DPV + +G DR+ I R + T P + Q L + + PN LK
Sbjct: 306 PKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALK 365
Query: 1034 KKIEAW 1039
I W
Sbjct: 366 NLIVQW 371
>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula
GN=LIN PE=2 SV=1
Length = 1488
Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNL-KPNEEL 1032
P +F P+ + DPVTL +G +R I L ++T P +RQ L + L K N L
Sbjct: 514 PKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILPKTNYVL 573
Query: 1033 KKKIEAWKREKIE 1045
K+ I +WK + E
Sbjct: 574 KRLIVSWKEQNPE 586
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS-TDPFSRQPLFEDNLKPNEELK 1033
P+EFR P+ LM DPV + SG +R I + L T P +++ L D + PN L+
Sbjct: 257 PEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLR 316
Query: 1034 KKIEAW 1039
I W
Sbjct: 317 SLIAQW 322
>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8
PE=2 SV=1
Length = 374
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS--TDPFSRQPLFED-NLKPN 1029
D P++FR P+ +M DPV L SG DR V ++ ++S T P ++ PL E L PN
Sbjct: 4 DLPNDFRCPISLEIMSDPVILQSGHTFDR-VSIQQWIDSGNRTCPITKLPLSETPYLIPN 62
Query: 1030 EELKKKI 1036
L+ I
Sbjct: 63 HALRSLI 69
>sp|Q925F4|RNF37_MOUSE RING finger protein 37 OS=Mus musculus GN=Ubox5 PE=2 SV=2
Length = 539
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 19/79 (24%)
Query: 972 NDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS------TDPFS-------R 1018
+D P+EF DP+ +M P+ LPSG V+D+S + + L+ + +DPF+
Sbjct: 257 SDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNLSEAAWGRVPSDPFTGLAFTPQS 316
Query: 1019 QPLFEDNLKPNEELKKKIE 1037
QPL P+ LK +I+
Sbjct: 317 QPL------PHPSLKARID 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,640,489
Number of Sequences: 539616
Number of extensions: 14904937
Number of successful extensions: 40913
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 40780
Number of HSP's gapped (non-prelim): 104
length of query: 1046
length of database: 191,569,459
effective HSP length: 128
effective length of query: 918
effective length of database: 122,498,611
effective search space: 112453724898
effective search space used: 112453724898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)