Query psy14915
Match_columns 1046
No_of_seqs 283 out of 1147
Neff 5.5
Searched_HMMs 46136
Date Sat Aug 17 00:12:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5113 UFD2 Ubiquitin fusion 100.0 5E-163 1E-167 1371.0 62.7 899 109-1046 4-924 (929)
2 KOG2042|consensus 100.0 2E-157 4E-162 1408.5 58.5 897 100-1046 9-940 (943)
3 PF10408 Ufd2P_core: Ubiquitin 100.0 1E-148 3E-153 1343.0 55.7 605 339-959 1-629 (629)
4 PF04564 U-box: U-box domain; 99.8 9E-22 1.9E-26 175.8 4.3 72 974-1045 1-73 (73)
5 smart00504 Ubox Modified RING 99.6 2.5E-15 5.4E-20 129.4 4.9 63 977-1039 1-63 (63)
6 KOG4692|consensus 99.4 1.1E-10 2.4E-15 128.1 27.1 366 622-1022 20-467 (489)
7 KOG4642|consensus 99.2 1.8E-11 4E-16 130.0 7.3 74 971-1044 205-279 (284)
8 TIGR00599 rad18 DNA repair pro 98.0 6.5E-06 1.4E-10 95.3 6.2 73 971-1043 20-92 (397)
9 PLN03208 E3 ubiquitin-protein 98.0 4.3E-06 9.3E-11 87.7 3.4 63 969-1031 10-88 (193)
10 KOG0289|consensus 98.0 2.7E-06 5.9E-11 96.9 1.7 51 978-1028 1-52 (506)
11 PF11789 zf-Nse: Zinc-finger o 97.8 9.2E-06 2E-10 69.8 1.1 44 975-1018 9-55 (57)
12 PHA02929 N1R/p28-like protein; 96.7 0.014 2.9E-07 64.1 11.6 48 975-1022 172-227 (238)
13 KOG0823|consensus 96.6 0.0011 2.3E-08 71.3 2.4 54 976-1029 46-102 (230)
14 COG5222 Uncharacterized conser 96.5 0.0048 1E-07 67.9 6.6 101 942-1046 240-346 (427)
15 PF13923 zf-C3HC4_2: Zinc fing 96.3 0.0027 5.7E-08 50.1 2.4 37 980-1016 1-38 (39)
16 PF13445 zf-RING_UBOX: RING-ty 96.3 0.0025 5.3E-08 51.9 2.0 31 980-1011 1-35 (43)
17 KOG0287|consensus 96.2 0.003 6.5E-08 70.7 3.2 66 976-1041 22-87 (442)
18 PF15227 zf-C3HC4_4: zinc fing 96.1 0.0038 8.3E-08 50.4 2.5 32 980-1011 1-32 (42)
19 KOG0317|consensus 96.1 0.0042 9.1E-08 68.7 3.2 58 970-1027 231-289 (293)
20 PF13920 zf-C3HC4_3: Zinc fing 96.0 0.0042 9E-08 51.6 2.3 47 976-1022 1-48 (50)
21 KOG2177|consensus 95.5 0.014 3.1E-07 62.9 4.5 68 973-1042 9-76 (386)
22 PF14835 zf-RING_6: zf-RING of 94.8 0.0085 1.8E-07 52.6 0.1 57 978-1036 8-65 (65)
23 COG5432 RAD18 RING-finger-cont 94.7 0.021 4.6E-07 62.9 3.1 65 977-1041 25-89 (391)
24 KOG2979|consensus 93.6 0.058 1.3E-06 59.1 3.6 63 977-1039 176-245 (262)
25 KOG0883|consensus 93.5 0.045 9.7E-07 62.6 2.5 55 973-1028 37-91 (518)
26 PF13639 zf-RING_2: Ring finge 93.5 0.037 8E-07 44.7 1.4 39 980-1018 3-44 (44)
27 KOG3039|consensus 92.4 0.092 2E-06 57.0 2.9 54 975-1028 219-276 (303)
28 KOG0297|consensus 91.9 0.13 2.8E-06 60.6 3.6 68 973-1040 17-86 (391)
29 PF06416 DUF1076: Protein of u 91.9 0.093 2E-06 50.8 1.9 55 974-1028 36-97 (113)
30 TIGR00570 cdk7 CDK-activating 91.7 0.23 5.1E-06 56.3 5.2 62 976-1037 2-73 (309)
31 PF00097 zf-C3HC4: Zinc finger 91.5 0.15 3.3E-06 40.3 2.5 37 980-1016 1-40 (41)
32 PF04641 Rtf2: Rtf2 RING-finge 90.9 0.29 6.4E-06 54.5 5.0 55 973-1028 109-167 (260)
33 cd00162 RING RING-finger (Real 90.9 0.24 5.3E-06 38.6 3.2 42 980-1021 2-45 (45)
34 KOG0320|consensus 90.7 0.13 2.9E-06 53.6 1.9 51 978-1028 132-184 (187)
35 KOG4159|consensus 90.4 0.25 5.4E-06 58.1 4.0 71 971-1041 78-153 (398)
36 COG5243 HRD1 HRD ubiquitin lig 90.4 0.59 1.3E-05 53.6 6.7 38 990-1027 313-350 (491)
37 KOG0826|consensus 90.2 0.15 3.3E-06 57.5 1.9 54 974-1027 297-351 (357)
38 KOG3039|consensus 89.5 0.19 4.1E-06 54.7 2.0 37 974-1010 40-76 (303)
39 PHA02926 zinc finger-like prot 88.7 0.25 5.3E-06 53.5 2.1 55 974-1030 167-236 (242)
40 COG5574 PEX10 RING-finger-cont 88.3 0.23 5E-06 54.8 1.6 56 971-1026 208-266 (271)
41 smart00184 RING Ring finger. E 87.8 0.43 9.2E-06 35.8 2.4 37 980-1016 1-38 (39)
42 KOG2164|consensus 86.8 0.43 9.3E-06 57.0 2.7 53 977-1029 186-243 (513)
43 KOG0311|consensus 85.4 0.26 5.6E-06 56.3 0.1 71 968-1038 34-107 (381)
44 KOG0802|consensus 85.1 0.42 9.1E-06 58.6 1.7 47 977-1023 291-342 (543)
45 PF12678 zf-rbx1: RING-H2 zinc 84.3 0.96 2.1E-05 40.9 3.2 39 980-1018 22-73 (73)
46 KOG2660|consensus 79.2 1.1 2.5E-05 50.9 2.1 69 971-1039 9-82 (331)
47 KOG2817|consensus 76.0 2.2 4.8E-05 49.8 3.2 43 978-1020 335-383 (394)
48 PF04641 Rtf2: Rtf2 RING-finge 71.0 3.8 8.2E-05 45.8 3.6 53 976-1028 33-90 (260)
49 KOG3113|consensus 70.3 5.1 0.00011 44.3 4.1 126 909-1042 40-185 (293)
50 PF14634 zf-RING_5: zinc-RING 68.7 3.4 7.3E-05 33.5 1.9 40 980-1019 2-44 (44)
51 COG5540 RING-finger-containing 65.9 5.1 0.00011 45.3 3.1 33 991-1023 340-373 (374)
52 KOG1785|consensus 64.6 2.7 5.8E-05 48.8 0.8 44 979-1022 371-416 (563)
53 KOG0978|consensus 64.1 2.8 6.1E-05 52.4 0.9 51 978-1028 644-695 (698)
54 KOG4367|consensus 63.3 3.1 6.7E-05 48.7 0.9 35 976-1010 3-37 (699)
55 KOG0824|consensus 62.1 3.8 8.3E-05 46.3 1.4 45 980-1024 10-55 (324)
56 COG5109 Uncharacterized conser 50.7 11 0.00024 42.8 2.6 44 977-1020 336-385 (396)
57 KOG0396|consensus 47.8 9 0.00019 44.6 1.3 48 978-1025 331-382 (389)
58 KOG4628|consensus 46.2 14 0.00029 43.2 2.4 45 978-1022 230-278 (348)
59 PF06685 DUF1186: Protein of u 44.1 1E+02 0.0022 34.6 8.7 113 286-419 54-167 (249)
60 KOG1813|consensus 43.1 12 0.00026 42.4 1.4 64 969-1035 235-298 (313)
61 KOG1002|consensus 42.6 13 0.00028 44.8 1.6 55 977-1031 536-595 (791)
62 PF02891 zf-MIZ: MIZ/SP-RING z 42.3 19 0.00041 30.4 2.1 43 978-1020 3-50 (50)
63 PF12861 zf-Apc11: Anaphase-pr 41.4 19 0.00041 33.9 2.1 44 980-1023 35-83 (85)
64 PF11101 DUF2884: Protein of u 28.9 4.8E+02 0.01 28.8 10.9 89 805-898 38-127 (229)
65 KOG1001|consensus 27.7 63 0.0014 41.1 4.3 119 899-1028 377-506 (674)
66 PF11672 DUF3268: Protein of u 24.8 1.1E+02 0.0024 29.9 4.3 41 379-419 59-100 (102)
67 PF05883 Baculo_RING: Baculovi 23.6 58 0.0012 33.2 2.3 43 978-1020 27-78 (134)
68 COG5627 MMS21 DNA repair prote 22.9 60 0.0013 35.9 2.5 63 978-1040 190-259 (275)
69 COG5194 APC11 Component of SCF 22.4 54 0.0012 30.6 1.7 33 990-1022 48-81 (88)
70 KOG0828|consensus 20.0 53 0.0012 39.7 1.5 34 990-1023 601-635 (636)
No 1
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-163 Score=1370.95 Aligned_cols=899 Identities=25% Similarity=0.341 Sum_probs=791.6
Q ss_pred HHHHHHHHHHheeeeccCCCCCCeeeccchHHHHHHhhcCCccCChHHHHHHHHHHHhhhhhccCcccchhhhHHHHH-H
Q psy14915 109 QIIENTICKILSVTYSQVDASNTILYLPQVASVLTELKQNSVTITYQDLISQSLVELQDILLSKNNTCVLGHYTASYA-R 187 (1046)
Q Consensus 109 e~~~~~l~~If~vTl~~~~~~~~lvyL~~la~el~e~~~~~~~l~~~d~l~~~l~e~~~~~~~p~~~~~~~YL~~c~~-R 187 (1046)
+|++++-+.++.||.+|+|.. -++| +.++. ..+|..+.. +.+|.+|+-.++. ....+|+||.+||+ +
T Consensus 4 ~~M~~ie~~~l~it~~p~D~~--~y~l--fk~~e---~~~gS~l~~-n~~d~~LL~~l~~----~~nn~fsYl~~s~~fl 71 (929)
T COG5113 4 PGMNRIELYELFITGMPADMD--PYEL--FKEAE---CIRGSYLTN-NSSDNILLTLLPR----YKNNTFSYLQESAKFL 71 (929)
T ss_pred cccchhhhhhhhcccCccccc--hhhh--cchhh---ccccCcccc-ccHHHHHHHHccc----cCCCchHHHHHHHHHH
Confidence 588999889999999998744 2555 33433 223445654 6888898766442 23568999999999 5
Q ss_pred HHHHHhhCCCCCCCcchHHHHHHHHHHHHhhhhhhccccCCCCCCccchhh---hh-hCCCChhHHHHHHHHHhcChhhH
Q psy14915 188 VFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDPMSSPLVKP---LI-NQTLPNGFLSDFVCTLYEDEETF 263 (1046)
Q Consensus 188 ~~~~~r~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l~~~~~~~~~~~ll~~---~l-~~~l~~~Fl~e~v~~~~~d~~~l 263 (1046)
.+..+|..+.+......+.-++.|.+|.++|+|.++..++-. .+..+.. +. .-++|-.|+.+++.|-....+.+
T Consensus 72 ~q~~kri~kn~~~a~s~hs~~~li~~l~~~y~g~v~~~~e~F--N~e~i~~ieg~~~~~~~p~~fls~f~qr~l~e~~nl 149 (929)
T COG5113 72 IQTIKRIVKNPEMAGSAHSPVALIPLLTNTYGGSVFDVMECF--NSEKISEIEGMARKMLLPMIFLSSFKQRQLDEASNL 149 (929)
T ss_pred HHHHHHhcCCccccccccchHHHHHHHHhhccceEeehHhhc--chhHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhH
Confidence 555555433333445567789999999999999988655522 1223322 22 24688899999999955444569
Q ss_pred HHhHHHHHHHHHHHhhccCcCCCCccchHHHHHHHHhcccCCCchhhHHHhhhCcccCCCCccchhhhhhhhhccccccc
Q psy14915 264 KQVMSPILQGVYKAMTEASIADPDYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFF 343 (1046)
Q Consensus 264 ~~if~~i~~~l~~~~~~~~l~~~~~~~~l~~l~~L~~~~~~~~~kpia~~l~~~~~f~p~~~~~~~g~~~e~~SlLGpff 343 (1046)
+..|.++++.+....+.+.. +....+.+.++..|++ .||||.++.+.|.|.|+ ..+.+||.+|+|||+.
T Consensus 150 d~lF~~~LE~l~~~~g~~~~-dtV~~NVm~I~~~lv~------~kPia~v~~k~p~~~~t----~~p~~fe~kt~lG~i~ 218 (929)
T COG5113 150 DNLFTSALEALTGLHGVLEE-DTVLKNVMEIYWGLVN------TKPIADVILKFPIYSGT----NFPCGFEYKTLLGFIE 218 (929)
T ss_pred HHhhHHHHHHHhhhcccchH-HHHHHHHHHHHHHHhc------CccHHHHhhcCcccCCC----CCCCCCcceeeccccc
Confidence 99999999999998887775 3333345666667775 48999999999999986 4456799999999999
Q ss_pred ccCcCCCcchhhhhccCCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHhhhhhhh
Q psy14915 344 SISVFAEDDVKVGNHFFSSVTDLN---NKSIQATLQNGLQLTRGFLYRICHTMLR-NNPTRETMLGYLAALVGHNEKRAQ 419 (1046)
Q Consensus 344 ~lS~l~~~~p~v~~~yF~~~~~~~---~~~~~~slq~~l~~~~~~L~~I~~~Llr-~~~sRe~~L~w~a~~l~~N~~R~~ 419 (1046)
++|++ ..+||.+||++...++ +..+.++||.+|..+++.||+|+++|+| |.+.|+.+++|||.++|+||+|++
T Consensus 219 sls~~---~~dvA~r~~~~~~~rs~q~v~~s~~Sl~~t~s~~~d~lfqIi~~lvr~S~~lr~~~~~yfa~v~n~nh~R~~ 295 (929)
T COG5113 219 SLSYK---KCDVAARALDYLGIRSRQVVEKSRRSLRLTLSDHSDKLFQIIHSLVRSSKELRANFMKYFAKVINVNHERSK 295 (929)
T ss_pred ccchh---hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccchhhcc
Confidence 99999 7789999998877665 6678999999999999999999999999 678999999999999999999999
Q ss_pred hcccccCccchhhHHhHHHHHHHhhccc------ccCcccCCCcCCCCCCccccCCccccccCChHHHHHHHhhccCCCC
Q psy14915 420 LQSEESTLAGDGFMLNLLAVFQALSDKI------DLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAW 493 (1046)
Q Consensus 420 ~q~d~~~~aSDGFmlNl~~VL~rLc~p~------Ki~kID~~Y~~~~~~~~rvdi~~ETrlna~~~e~~~~~~~~~~~~~ 493 (1046)
.|+..+...|||||.|++.||.||++|+ |||+||..| |+ |+ ||||++|||+|+|+.+++.||++. ..
T Consensus 296 ~~~~~~e~~Sdgfm~N~s~vlsRfs~pflDi~~sKID~vd~~Y-Fn-NP--~vDik~ETklN~d~k~~dsFy~K~---Ae 368 (929)
T COG5113 296 TIFSWRENISDGFMYNMSMVLSRFSRPFLDIGCSKIDMVDKIY-FN-NP--RVDIKEETKLNVDEKSLDSFYTKP---AE 368 (929)
T ss_pred ccCCHhhhcchHHHHHHHHHHHHhcccccccccchhhhHhHHh-hc-CC--ccccccchhcchhhhhhhccccCc---cc
Confidence 9999999999999999999999999994 999999999 55 67 999999999999999999999842 33
Q ss_pred CCCCcchhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcchhccccchHhHHhHHHHHHHHHHHHHHHHHHH
Q psy14915 494 REPKFSSTCWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKA 573 (1046)
Q Consensus 494 ~~~nFitecFFLTl~~~HlG~~~~~~~~~~~~r~l~~l~~~~~~l~~~~~~~~~~P~~~~~~~~l~~~~~~l~~l~~~~~ 573 (1046)
+.+||||+||||+++.||||+++++.-..++...|+.++. +++.+.+...|+-++.|.-+.+.|+.+.++...+...
T Consensus 369 ~s~NFISD~FFl~lt~~HyGv~~tf~~~ek~g~~IrkLKE---~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S~~~ 445 (929)
T COG5113 369 GSNNFISDIFFLYLTKIHYGVNATFTSCEKFGEYIRKLKE---SLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDSKMS 445 (929)
T ss_pred cCCccchhhHHhHHHHHHhccchhHHHHHHHHHHHHHHHH---HHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHHHHH
Confidence 5799999999999999999999999888888888776554 4444444445666787778889999999998888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCCCCCCccccccchHHHHHHHHHHHHHHhhCCCcc-
Q psy14915 574 CADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEE--NLCNITLPLPSTVRPEFAALPEWYVEDIAEFLLFALQYIPGIE- 650 (1046)
Q Consensus 574 ~~~~~L~dp~~l~~~l~F~~~~~~wL~rl~~~~~--~~~~~~lPLp~~~p~~f~~lPE~~vEdi~d~~~fi~r~~p~~l- 650 (1046)
|+++-|...++..+.+.|.++++.||.|+.+|+. |....+||+-+.+|.+|+|+|||+||++++|...+.++....+
T Consensus 446 al~gfl~~tsl~~~~f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~Spif 525 (929)
T COG5113 446 ALNGFLFMTSLFADEFPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRSPIF 525 (929)
T ss_pred HHHHHHHHhhhhhhccchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccCchh
Confidence 9999999999999999999999999999997776 3446788988899999999999999999999999988776666
Q ss_pred hhhhhHHHHHHHHHhCCCCCccChhhhhhHHHHhhhcC-CCCCCcchhHHHHHhhChhhhhhhHHHHHhhheeeeecCCC
Q psy14915 651 DVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISN-PDVQTRTSNLYDRIMAHKFSSQFLPSYLMKFYTDVETTGSS 729 (1046)
Q Consensus 651 ~~~~~~li~f~i~~l~s~~~ikNP~LraklvevL~~~~-p~~~~~~~~l~~~~~~~~~a~~~L~~aLm~fYidvE~TG~~ 729 (1046)
...++++++||.+++.+|++||||||++||+++|+.|. |.....+|.++++|...+++.++|+||||.|||+||+||+|
T Consensus 526 ~~~L~~l~Ef~~~vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqS 605 (929)
T COG5113 526 KKELEPLCEFVKIVLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQS 605 (929)
T ss_pred hccccchhhhhhhhcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcc
Confidence 55599999999999999999999999999999999985 55555667899999999999999999999999999999999
Q ss_pred CcchhhhchhhhHHHHHHHhcCChhHHHHHHHHhhc-cchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy14915 730 SEFYDKFTIRYHISLILKGMWESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYA 808 (1046)
Q Consensus 730 sqFYdKFn~Ry~I~~Ilk~LW~~~~~r~~l~~es~~-~~~FvrFvN~LiND~t~lLDE~L~~L~~I~~~q~~~~d~~~w~ 808 (1046)
+|||||||+||.|+.+++.+|+.|.|.+++..+.++ -++||||...++||+||+|||+|.+|.++|++|.+++|....+
T Consensus 606 tqfydkfNirf~ic~~~~~~yK~Psy~~~L~~~~~tN~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s 685 (929)
T COG5113 606 TQFYDKFNIRFIICMMKDFEYKQPSYSEGLSSIKDTNLPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSLLADAISNS 685 (929)
T ss_pred cceeeeccceeehhHHHHHHhcCchhhhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC
Confidence 999999999999999999999999999999999875 6899999999999999999999999999999999999876544
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhHHhcCCCCchHHHHHHHHHHHHHHhhhhCCCccCccccCCc
Q psy14915 809 AIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPD 888 (1046)
Q Consensus 809 ~l~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~lT~~i~~~Fl~peiv~RLA~MLnynL~~LvGpk~~~LkVknpe 888 (1046)
-..|+-++.+..|+.++||||++++|+++++.||+.++++||++|+.+|||+|||+||||||+.||||||.+||||+|+
T Consensus 686 -n~~e~~~elq~~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~ 764 (929)
T COG5113 686 -NISERIGELQKSLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPE 764 (929)
T ss_pred -chhhHHHHHHHHHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChh
Confidence 3455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhcC-chHHHHHHhhcCccCCHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHhhhh
Q psy14915 889 KYGWDPRRLLNQLVDIYLHLD-CDEFAAAIAQDERSFRKELFDDAADRMERRQILLPSSLDKFRALASRAHEISVANIKK 967 (1046)
Q Consensus 889 kY~F~Pk~lL~~i~~IYlnL~-~~~F~~ava~D~Rsy~~elF~~a~~il~~~~l~~~~~i~~~~~l~~~v~~~~~~~~~~ 967 (1046)
+|+|+||.||+.++++|+||. ..+|++|||+|||||+.++|.+|.+|+.++.++++.+|+++.+|+.++++.+.....+
T Consensus 765 ~Y~FnaK~LL~~~~~VYinl~~es~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~E 844 (929)
T COG5113 765 QYGFNAKNLLRRMVMVYINLRSESKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVE 844 (929)
T ss_pred hcCCCHHHHHHHHHHHhhhhcchHHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999996 5899999999999999999999999999999999999999999999999999888888
Q ss_pred hcccCCCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHhccC
Q psy14915 968 EVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKIEK 1046 (1046)
Q Consensus 968 e~~~~~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~~k 1046 (1046)
|+|+||+||||+||+|+++|+|||+|| ||.++||+||..||++|+||||||.||+.|||+||.+||++|..|.+.++.|
T Consensus 845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~K 924 (929)
T COG5113 845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQK 924 (929)
T ss_pred hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999988775
No 2
>KOG2042|consensus
Probab=100.00 E-value=1.8e-157 Score=1408.50 Aligned_cols=897 Identities=36% Similarity=0.540 Sum_probs=750.5
Q ss_pred cCCCCCCCHH-HHHHHHHHHheeeeccCCCCCCeeeccchHHHH-HHhhc-----CC--ccCChHHHHHHHHHHHhhhhh
Q psy14915 100 KAPSMEITPQ-IIENTICKILSVTYSQVDASNTILYLPQVASVL-TELKQ-----NS--VTITYQDLISQSLVELQDILL 170 (1046)
Q Consensus 100 ~~~~~e~~~e-~~~~~l~~If~vTl~~~~~~~~lvyL~~la~el-~e~~~-----~~--~~l~~~d~l~~~l~e~~~~~~ 170 (1046)
+.+.+|.+.. -.++.++++..+.++..+.. .++|++..++. .+..+ .+ .+++ ..|...+.....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~-- 81 (943)
T KOG2042|consen 9 SLSDPEGVSSDPMAREASSIILIQLLNFDVS--PIVLPSADSRGSYELFSSDLPADGLSHRFN---EAESDTLALCTE-- 81 (943)
T ss_pred cccCCcccccCccchHHHHHHHHHhcccccc--hhhccchhhhHHHHhccccccccCCccccc---hhhhHHHHhhcc--
Confidence 3444444444 66777887777777654432 25666655544 11111 11 2333 233333322221
Q ss_pred ccCcccchhhhHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHhhhhhhc--------cccCCCCC----Cccchhh
Q psy14915 171 SKNNTCVLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVL--------QSTNSDPM----SSPLVKP 238 (1046)
Q Consensus 171 ~p~~~~~~~YL~~c~~R~~~~~r~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l--------~~~~~~~~----~~~ll~~ 238 (1046)
++....++.|+..||.++....++.-.+ +. ++. .+.+++..++. |.+. .+. .+.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~----~~~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~ 151 (943)
T KOG2042|consen 82 NDALNILFIYLYRCKSELSQYKRKECRK---PT----LEQ--NLKLAGSSFVMITLGVLAPQLRL-QPASLQDISGLLEL 151 (943)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHhcC---cc----hhh--chhhccchheeeehhhccchhhh-hhhhhhhHHHHHHH
Confidence 1223456889999999987666542111 11 111 23333333322 1111 110 1223333
Q ss_pred hhhC--CCChhHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhccCcCCC-CccchHHHHHHHHhcccCCCchhhHHHhh
Q psy14915 239 LINQ--TLPNGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADP-DYSKPLEALTDLLEIRIGSNVWPVCSALV 315 (1046)
Q Consensus 239 ~l~~--~l~~~Fl~e~v~~~~~d~~~l~~if~~i~~~l~~~~~~~~l~~~-~~~~~l~~l~~L~~~~~~~~~kpia~~l~ 315 (1046)
+... ..+..|+.++..+++.| .++.||.|+++.+...+....++-. .+..++.++..+++ .||+|++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~d--~l~~if~~vl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~kp~a~l~~ 223 (943)
T KOG2042|consen 152 MNSEGFARPLLFLLEVTEHFDLD--ALDAIFNPVLERLESNLDILKLNVLVLENLVLLILLYFVS------TKPIADLLV 223 (943)
T ss_pred hhhhhcccchhHHHHHhhhhhhH--HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcC------CCcHHHHHh
Confidence 3333 35567888888777665 4999999999777755554443311 12333555555553 599999999
Q ss_pred hCcccCCCCccchhhhhhhhhcccccccccCcCCCcchhhhhccCCcccccChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14915 316 SQVQFQPELNTKAVGREIAVTSYLGPFFSISVFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLR 395 (1046)
Q Consensus 316 ~~~~f~p~~~~~~~g~~~e~~SlLGpff~lS~l~~~~p~v~~~yF~~~~~~~~~~~~~slq~~l~~~~~~L~~I~~~Llr 395 (1046)
++|+|.|++ +|++++..|+|||||++|+++.++ .....+|+..+......+..+++..++ +...+|+|++.+|+
T Consensus 224 ~~~~~~p~~----~g~e~~~~s~LGpfls~S~~~~~~-~~~y~~~~e~s~~~~~~~~~s~~~~~~-~~~~~~~~v~~ll~ 297 (943)
T KOG2042|consen 224 KLPDFLPPP----CGREFELKSFLGPFLSISCLPAAP-AKRYGDFSERSRKNTSEVSSSLLLYHQ-MDRKMLQIVKHLLR 297 (943)
T ss_pred hccccCCCC----CCcchhhhhhhccceeeeeccccc-hhhhcccchhhhcchHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 999999983 799999999999999999998763 332222333333336667788888888 66999999999998
Q ss_pred -CChhhHHHHHHHHHHHHhhhhhhhhcccccCccchhhHHhHHHHHHHhhccc------ccCcccCCCcCCCCCCccccC
Q psy14915 396 -NNPTRETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKI------DLFKVDLMYPFHPNKSEMLSF 468 (1046)
Q Consensus 396 -~~~sRe~~L~w~a~~l~~N~~R~~~q~d~~~~aSDGFmlNl~~VL~rLc~p~------Ki~kID~~Y~~~~~~~~rvdi 468 (1046)
|+++|+++|+|+|.|+|+|++|+++|+|++.++|||||+|+++||+|||+|+ |++||||+|+..+. +.+.
T Consensus 298 ~s~etr~~~L~~~a~vi~aN~~R~~~~~~~~~~~sDgfm~Nl~~Vl~rls~p~~~~~~~~~~~~~p~y~~~~~---~~~~ 374 (943)
T KOG2042|consen 298 LSPETREKTLSYVANVINANDKRASIQVDPREVASDGFMLNLSAVLSRLSEPFLDPSIKKIDKIDPEYLINIS---KETR 374 (943)
T ss_pred cChhhHHHHHHHHHHHhhcccccccccCCHHHhhchHHHHHHHHHHHHhcccccccccccccccChHHhcCcc---Hhhh
Confidence 8999999999999999999999999999999999999999999999999995 68999999976543 7888
Q ss_pred CccccccCChHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcchhccccc
Q psy14915 469 KNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGT 548 (1046)
Q Consensus 469 ~~ETrlna~~~e~~~~~~~~~~~~~~~~nFitecFFLTl~~~HlG~~~~~~~~~~~~r~l~~l~~~~~~l~~~~~~~~~~ 548 (1046)
.++|+++++..|+. |+++. +++||+|||||||+++||||+.+++.+|.++.++|+++++.++.++..+.+|.
T Consensus 375 ~~~t~~~~~~~~t~-~~~~~-----~~~~F~t~cfFltl~~~~l~~~~~~~~~~~i~~~i~~l~~~i~~lk~~~d~~~-- 446 (943)
T KOG2042|consen 375 SKETELNADDKETC-FYDKP-----GEPNFPTECFFLTLAALHLGLLPTCSAFSEINRSLPELKPLIETLKVIADGYS-- 446 (943)
T ss_pred hhhhhhccchhhhh-ccCCC-----CCCCcchHHHHHHHHHHHhchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhh--
Confidence 99999999999998 88642 58999999999999999999999999999999999999999999998887775
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCCCccccccc
Q psy14915 549 VIARRNKDFLKRWKHQIKKLSRSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENLCNITLPLPSTVRPEFAALP 628 (1046)
Q Consensus 549 P~~~~~~~~l~~~~~~l~~l~~~~~~~~~~L~dp~~l~~~l~F~~~~~~wL~rl~~~~~~~~~~~lPLp~~~p~~f~~lP 628 (1046)
.+.+..+.+++++++++.+.+.+.|+++++++|.++.+++.|+.+++.|++|+++- .++.+. ++|-.+|..|+|+|
T Consensus 447 -~a~~~~~~l~r~e~~lk~~~~~k~~~~~~~~~p~l~~~~~~f~~~~s~~l~~~~~~--~~~~~~-~~p~~~p~~f~~lP 522 (943)
T KOG2042|consen 447 -VANLESADLTRLEKGLKLLSSIKPCLEITLLFPSLLQRCLNFYDFMSEGLLRVVDL--EMPDSS-TLPLNAPCRFSALP 522 (943)
T ss_pred -hhhhhhhHHHHHHHHHHHHHhhhhhhhhhhcCcHHHHHhhccHHHHHHHHHHHhhc--cCCccc-CCCCCCccccccCc
Confidence 55556788999999999999999999999999999999999999999999999941 233332 44447889999999
Q ss_pred hHHHHHHHHHHHHHHhhCCCcc-hhhhhHHHHHHHHHhCCCCCccChhhhhhHHHHhhhcCCCCCCcchhHHHHHhhChh
Q psy14915 629 EWYVEDIAEFLLFALQYIPGIE-DVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAHKF 707 (1046)
Q Consensus 629 E~~vEdi~d~~~fi~r~~p~~l-~~~~~~li~f~i~~l~s~~~ikNP~LraklvevL~~~~p~~~~~~~~l~~~~~~~~~ 707 (1046)
||++||+.+|+.|++++.+..+ ...++++++|++++|++++|+||||||||+||++++..+. .+.+.+...|+.++.
T Consensus 523 E~~vedi~efllf~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~ikNP~l~aKlvevl~~~~~~--~s~~~v~~v~~~~~~ 600 (943)
T KOG2042|consen 523 EFFVEDIEEFLLFARKLGKMALDLQRLADIVTFLTVFMTSSMYIKNPYLRAKLVEVLSMPKPS--LSFNAVSRVIEAHEN 600 (943)
T ss_pred hhhcCCHHHHHHHHHHhchhhhccccchhHHHHHHHhcccHhhhcChHHHHHHHHHHhccCcc--cCchHHHHHHHhccc
Confidence 9999999999999999987656 6778999999999999999999999999999999965543 344457778888887
Q ss_pred hhhhhHHHHHhhheeeeecCCCCcchhhhchhhhHHHHHHHhcCChhHHHHHHHHhhc-cchHHHHHHHHHhhhHHHHHH
Q psy14915 708 SSQFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDE 786 (1046)
Q Consensus 708 a~~~L~~aLm~fYidvE~TG~~sqFYdKFn~Ry~I~~Ilk~LW~~~~~r~~l~~es~~-~~~FvrFvN~LiND~t~lLDE 786 (1046)
+. |+++||+||||||+||+++|||||||+||+|+.|++++|.+|.|++++.+++++ ++.|+||+|+++||+||+|||
T Consensus 601 ~~--L~~~llr~yv~ie~tg~s~qfydKfnvr~~i~~i~~~mw~~pa~~~~~~~~~~~~~~~f~rfvn~l~Nd~t~lLDE 678 (943)
T KOG2042|consen 601 GG--LVPCLLRFYVDIESTGQSSQFYDKFNVRRNISEILEYMWQDPAYRGEFMDEAKDAPPVFVRFVNMLLNDATFLLDE 678 (943)
T ss_pred cc--cchhhhhheeeeecCCCchhHHHHhHHHhhHHHHHHHHhcCccccchhhhhccccchHHHHHHHHHhhhHHHHHhH
Confidence 75 999999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhHHhcCCCCchHHHHHHHHH
Q psy14915 787 SLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAM 866 (1046)
Q Consensus 787 ~L~~L~~I~~~q~~~~d~~~w~~l~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~lT~~i~~~Fl~peiv~RLA~M 866 (1046)
++.+|.+||++|..++|.++|..++.++|+++.+.+++++|+||+|+.++++|+.||+++|+++|++|++||+|+|+|+|
T Consensus 679 ~l~~L~~i~~iq~~~kn~~q~~~~~~~~~e~~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~elv~rla~M 758 (943)
T KOG2042|consen 679 SLSELMEIHQIQPSGKNIDQWTKLKREEREAKWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLPELVERLAAM 758 (943)
T ss_pred HHHHhhhhhhhhhhhhhhhhccCCcHHHHHHHHhccccchhhhcccceeccchhhHHHHHHhhcchhhcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCCccCccccCCcccCCChHHHHHHHHHHHHhcC-chHHHHHHhhcCccCCHHHHHHHHHHHHHhccCChh
Q psy14915 867 LNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHLD-CDEFAAAIAQDERSFRKELFDDAADRMERRQILLPS 945 (1046)
Q Consensus 867 LnynL~~LvGpk~~~LkVknpekY~F~Pk~lL~~i~~IYlnL~-~~~F~~ava~D~Rsy~~elF~~a~~il~~~~l~~~~ 945 (1046)
|||||.+||||||.+||||||++|+|+||++|++|++||+||+ ++.|+.|||.|||||++++|..|.++++|.++++..
T Consensus 759 LN~nL~~lvGPK~~~Lkvkdp~~y~fePk~ll~~i~~iYlnl~~~~~F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~ 838 (943)
T KOG2042|consen 759 LNYNLSQLVGPKCSDLKVKDPEKYGFEPKQLLSQLSDIYLNLSSEPSFVEAVAKDGRSYSEELFNHAISILRKRILKSSR 838 (943)
T ss_pred HhhhHHHhhCCcccccccCCccccCCChHHHHHHHHHHHHhhccchhHHHHHhccccccCHHHHhhhHHHHHHhhcccHH
Confidence 9999999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy14915 946 SLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFED 1024 (1046)
Q Consensus 946 ~i~~~~~l~~~v~~~~~~~~~~e~~~~~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~~~ 1024 (1046)
+|++|.+|+.++++....++++|++++|+||||+||||+++|.|||+|| ||+++||++|.+||+++++|||||+||+++
T Consensus 839 ~Ie~~s~la~~~~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d 918 (943)
T KOG2042|consen 839 QIEEFSELAERVEATASIDAEEEEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTED 918 (943)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchh
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHHHHhccC
Q psy14915 1025 NLKPNEELKKKIEAWKREKIEK 1046 (1046)
Q Consensus 1025 ~lipn~~Lk~~I~~w~~~~~~k 1046 (1046)
+++||.+||++|+.|.++++.|
T Consensus 919 ~v~pn~eLK~kI~~~~~ek~~~ 940 (943)
T KOG2042|consen 919 MVSPNEELKAKIRCWIKEKRNK 940 (943)
T ss_pred hcCCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999998763
No 3
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=100.00 E-value=1.3e-148 Score=1343.04 Aligned_cols=605 Identities=45% Similarity=0.729 Sum_probs=512.3
Q ss_pred cccccccCcCCCcchhhhhccCCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHhh
Q psy14915 339 LGPFFSISVFAEDDVKVGNHFFSSVTDLN---NKSIQATLQNGLQLTRGFLYRICHTMLR-NNPTRETMLGYLAALVGHN 414 (1046)
Q Consensus 339 LGpff~lS~l~~~~p~v~~~yF~~~~~~~---~~~~~~slq~~l~~~~~~L~~I~~~Llr-~~~sRe~~L~w~a~~l~~N 414 (1046)
|||||++||+|+++|.+++.||+++..++ ++++..+||..++.++++||+|+++||| |+++|+++|+|||.|++.|
T Consensus 1 LGp~l~~S~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~lr~~l~~~~~~l~~i~~~LLr~s~~sR~~~L~w~a~~l~~N 80 (629)
T PF10408_consen 1 LGPFLSLSPLPDDQPEVAEQFFSNPSKRNQQDVESSISSLRQELQNIQDQLHQIFKSLLRASPESRERVLSWFAQILNAN 80 (629)
T ss_dssp THHHHT--TTS---HHHHHHHTTT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT-
T ss_pred CCCCeecCCCCCCccHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHhc
Confidence 89999999999999999999998887665 7788999999999999999999999998 7899999999999999999
Q ss_pred hhhhhh--cccccCccchhhHHhHHHHHHHhhccc------ccCcccCCCc---CCCCCCccccCCccccccCChHHHHH
Q psy14915 415 EKRAQL--QSEESTLAGDGFMLNLLAVFQALSDKI------DLFKVDLMYP---FHPNKSEMLSFKNDTRLKMSSQEVED 483 (1046)
Q Consensus 415 ~~R~~~--q~d~~~~aSDGFmlNl~~VL~rLc~p~------Ki~kID~~Y~---~~~~~~~rvdi~~ETrlna~~~e~~~ 483 (1046)
++|+|| |+|+..+||||||+|+++||+|||+|| |++||||+|| +.+..+.|||+++||||+++.+++++
T Consensus 81 ~~R~k~~~~~~~~~~aSDGFmlNl~~VLl~L~~Pf~~~~~~K~~kID~~Y~~~~~~~~~~~~vd~~~eT~l~~~~~e~~~ 160 (629)
T PF10408_consen 81 AKRAKMWLQVDPRTVASDGFMLNLTAVLLRLCQPFMDPSFSKIDKIDPDYCAHPLLRPRNSRVDISEETRLNATEEESEE 160 (629)
T ss_dssp GGGGSS--S--GGGS--HHHHHHHHHHHHHHHGGGGSTT-TTGGGS-TTT-----TSS--SSS--TT--BSSB-HHHHHH
T ss_pred hhhhhhhhccccccCCCcHHHHHHHHHHHHHHHhhhhhhhhhHhhcCcchhhhhhccccccccCcccccccCCChhHHhh
Confidence 999999 999999999999999999999999996 8999999994 23311339999999999999999999
Q ss_pred HHhhccCCCCCCCCcchhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcchhccccchHhHHhHHHHHHHHH
Q psy14915 484 WLASLSSTAWREPKFSSTCWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKH 563 (1046)
Q Consensus 484 ~~~~~~~~~~~~~nFitecFFLTl~~~HlG~~~~~~~~~~~~r~l~~l~~~~~~l~~~~~~~~~~P~~~~~~~~l~~~~~ 563 (1046)
|+++...+ +++||||||||||++++|||+.|++++|+++.|+++++++.++++++. ..++++++
T Consensus 161 ~~~~~~~~--~~~nFiTe~FFLT~~a~hlg~~~~~~~~~~~~r~l~~lq~~~~~~~~~--------------~~~~~~~~ 224 (629)
T PF10408_consen 161 WYEDLPNP--GPPNFITECFFLTLRALHLGLLPAIQRYKRLLRELRRLQRELEELEAS--------------AQLKRLKE 224 (629)
T ss_dssp HHHHCTTS--TS--HHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTT---------------HHHHHHHH
T ss_pred hhcccccC--CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHH
Confidence 99976542 249999999999999999999999999999999999999999998764 46688999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCC--C-CCcccCCCCCCCCccccccchHHHHHHHHHHH
Q psy14915 564 QIKKLSRSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEE--N-LCNITLPLPSTVRPEFAALPEWYVEDIAEFLL 640 (1046)
Q Consensus 564 ~l~~l~~~~~~~~~~L~dp~~l~~~l~F~~~~~~wL~rl~~~~~--~-~~~~~lPLp~~~p~~f~~lPE~~vEdi~d~~~ 640 (1046)
+++++.+.++|++++|+||+++.++++||++++.||++++++.. | ..++.+|||+++|+.|++||||+||||+||+.
T Consensus 225 ~~~~~~~~~~~~e~~L~~p~~~~~~~~F~~~~~~wL~~~~~~~~~~~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~ 304 (629)
T PF10408_consen 225 QLDKLMSEKLSLEAVLLDPDFLSRCLQFYNFVAQWLLRLADPSNQYPENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLL 304 (629)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHSTT--TTS-S---S-SS----TTGGGSBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995433 3 35688999999999999999999999999999
Q ss_pred HHHhh--CCCcc-hhhhhHHHHHHHHHhCCCCCccChhhhhhHHHHhhhcCCCCC-CcchhHHHHHhhChhhhhhhHHHH
Q psy14915 641 FALQY--IPGIE-DVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQ-TRTSNLYDRIMAHKFSSQFLPSYL 716 (1046)
Q Consensus 641 fi~r~--~p~~l-~~~~~~li~f~i~~l~s~~~ikNP~LraklvevL~~~~p~~~-~~~~~l~~~~~~~~~a~~~L~~aL 716 (1046)
|+.|+ .|..+ ...++++++|+|+||++|+||+|||||||+||+|++++|... ++.|.++++|++||++++||++||
T Consensus 305 f~~~~~~~~~~l~~~~~~~l~~f~i~fm~s~~~ikNP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sL 384 (629)
T PF10408_consen 305 FLRRFNNSPDLLSSQDLDELVTFCITFMGSPEYIKNPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSL 384 (629)
T ss_dssp HHTTSTT-TTTT-T-THHHHHHHHHHHHH-TTS---HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHH
T ss_pred HHHHhcCChhhhhhhhHHHHHHHHHHHhCChhhcCCHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHH
Confidence 99999 89888 778999999999999999999999999999999999998766 666778899999999999999999
Q ss_pred HhhheeeeecCCCCcchhhhchhhhHHHHHHHhcCChhHHHHHHHHhhc-cchHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy14915 717 MKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDESLESLKRIH 795 (1046)
Q Consensus 717 m~fYidvE~TG~~sqFYdKFn~Ry~I~~Ilk~LW~~~~~r~~l~~es~~-~~~FvrFvN~LiND~t~lLDE~L~~L~~I~ 795 (1046)
|+||||||+||+|+|||||||+||+|++||++||++|.||++|++++++ +++|+|||||||||+||||||||++|++||
T Consensus 385 m~~yidvE~Tg~~~qfydKFn~R~~i~~il~~lw~~~~~r~~~~~~~~~~~~~F~rFvn~liND~~~llDE~l~~L~~I~ 464 (629)
T PF10408_consen 385 MKFYIDVEKTGASTQFYDKFNIRYHISQILKYLWKNPEYREQFIKEAKENPPLFVRFVNMLINDTTFLLDESLSKLKEIK 464 (629)
T ss_dssp HHHHHHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccchhcccchhhHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 789999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhHHhcCCCCchHHHHHHHHHHHHHHhhhh
Q psy14915 796 ETQELMRDEAAYAAIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLC 875 (1046)
Q Consensus 796 ~~q~~~~d~~~w~~l~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~lT~~i~~~Fl~peiv~RLA~MLnynL~~Lv 875 (1046)
++|.+++|.++|+++++|+|+++++.++++||+||||++||++|++||++||+++|+||++||||+|||+||||||++||
T Consensus 465 ~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~rs~~~l~~~t~~~l~~lt~~~~~~Fl~~elv~RlA~MLn~~L~~L~ 544 (629)
T PF10408_consen 465 ELQEEMADQSEWNALSQEERQEKESQLEQAERQARSYLQLANETLKMLNYLTSEIPEPFLRPELVDRLAAMLNYNLDQLV 544 (629)
T ss_dssp HHHHHHHTSS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccccCCcccCCChHHHHHHHHHHHHhc-CchHHHHHHhhcCccCCHHHHHHHHHHHHHhccCChhhHHHHHHHH
Q psy14915 876 GPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHL-DCDEFAAAIAQDERSFRKELFDDAADRMERRQILLPSSLDKFRALA 954 (1046)
Q Consensus 876 Gpk~~~LkVknpekY~F~Pk~lL~~i~~IYlnL-~~~~F~~ava~D~Rsy~~elF~~a~~il~~~~l~~~~~i~~~~~l~ 954 (1046)
||||++||||||++|||+||+||.+||+||+|| .+++|++|||+|||||++++|++|+++++|.|+++++++++|++|+
T Consensus 545 Gpk~~~LkVk~~~~y~F~P~~ll~~i~~iy~~l~~~~~F~~ava~D~Rsy~~~lf~~a~~~l~~~~l~~~~~i~~f~~l~ 624 (629)
T PF10408_consen 545 GPKCSELKVKNPEKYGFDPKELLSQIVDIYLNLSDSDKFVQAVANDGRSYSPELFEKAVRILRRIGLKSEDEIEKFEELA 624 (629)
T ss_dssp SHHHHT---SSGGGGT--HHHHHHHHHHHHHHCTT-HHHHHHHHH-TTT--HHHHHHHHHHHTTSTSSTHHHHHHHHHHC
T ss_pred CCchhcccCCChhhcCCcHHHHHHHHHHHHhhcCCchHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy14915 955 SRAHE 959 (1046)
Q Consensus 955 ~~v~~ 959 (1046)
++|++
T Consensus 625 ~~ve~ 629 (629)
T PF10408_consen 625 KKVEE 629 (629)
T ss_dssp CHHHH
T ss_pred HHHhC
Confidence 99875
No 4
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.84 E-value=9e-22 Score=175.77 Aligned_cols=72 Identities=51% Similarity=0.811 Sum_probs=63.8
Q ss_pred CCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc-CCCCCCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Q psy14915 974 APDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKIE 1045 (1046)
Q Consensus 974 ~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~-~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~~ 1045 (1046)
||++|+|||++++|+|||++|||+||||++|++||.. +.+||+||++|+.++|+||..||++|++|+++|++
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 7999999999999999999999999999999999988 88999999999999999999999999999999864
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.56 E-value=2.5e-15 Score=129.44 Aligned_cols=63 Identities=44% Similarity=0.750 Sum_probs=61.6
Q ss_pred cccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q psy14915 977 EFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAW 1039 (1046)
Q Consensus 977 ef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w 1039 (1046)
+|.|||++.+|+|||++|+||+|+|++|.+|+.++.+||+||++++.++|+||..||++|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999999999998
No 6
>KOG4692|consensus
Probab=99.40 E-value=1.1e-10 Score=128.08 Aligned_cols=366 Identities=18% Similarity=0.183 Sum_probs=229.2
Q ss_pred ccccccchHHHHHHHHHHHHHHhhCCCcc--------hhhhhHHHHHHHHHhCCCCCccChhhhhhHHHHhhhcC--CCC
Q psy14915 622 PEFAALPEWYVEDIAEFLLFALQYIPGIE--------DVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISN--PDV 691 (1046)
Q Consensus 622 ~~f~~lPE~~vEdi~d~~~fi~r~~p~~l--------~~~~~~li~f~i~~l~s~~~ikNP~LraklvevL~~~~--p~~ 691 (1046)
..|+.+||+|+......+.-++.|.-+.- +...+...+|+-+....| +|--...|..|.+.|-..+ |+
T Consensus 20 slfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~-riv~a~~kdsllqal~t~~c~~~- 97 (489)
T KOG4692|consen 20 SLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADP-RIVLASCKDSLLQALGTLTCHKS- 97 (489)
T ss_pred chhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCc-eeeechhHHHHHHHhhheeechh-
Confidence 46999999999998888877777654321 122345677888888888 6666778888888886443 32
Q ss_pred CCcchhHHHHHh-hChhhhhhhHHHHHhhheeee---ec--------CCCCcchhhhchhhhHHHHHHHhcCCh------
Q psy14915 692 QTRTSNLYDRIM-AHKFSSQFLPSYLMKFYTDVE---TT--------GSSSEFYDKFTIRYHISLILKGMWESP------ 753 (1046)
Q Consensus 692 ~~~~~~l~~~~~-~~~~a~~~L~~aLm~fYidvE---~T--------G~~sqFYdKFn~Ry~I~~Ilk~LW~~~------ 753 (1046)
| + .+++ ..+-.+..|+++|+.-|-.-- .+ |. .|--|.| |-+ ++++.=-.+.
T Consensus 98 ----~-v-raler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~--Gf~y~~~-r~p--hl~rsr~~n~~~~sl~ 166 (489)
T KOG4692|consen 98 ----G-V-RALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGS--GFSYLKN-REP--HLCRSRSRNETHTSLS 166 (489)
T ss_pred ----h-h-hHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccC--Ccccccc-CCc--hhhhhhhccccccccc
Confidence 1 1 2232 233445567777777663110 00 22 2322222 111 2333322221
Q ss_pred -----hHHHHHHHH--hhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHhh
Q psy14915 754 -----IHRQAFINE--SKTGNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQLAADE 826 (1046)
Q Consensus 754 -----~~r~~l~~e--s~~~~~FvrFvN~LiND~t~lLDE~L~~L~~I~~~q~~~~d~~~w~~l~~eer~e~~~~l~~~e 826 (1046)
.+-|++++. .+++++-..|+|.++|-.+|-+.|.+..+.+|.+.-+.|+ +.-.-..+.
T Consensus 167 ~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E---------------~~~~e~~Ql 231 (489)
T KOG4692|consen 167 SPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRME---------------NTLFEPFQL 231 (489)
T ss_pred CCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---------------hhccCHHHH
Confidence 345555533 3678899999999999999999999999776644332222 221222345
Q ss_pred hhhhhhhhhHHHHHHHHHHHhHHhcCCCCc------hHHHHHHHHHHHHHHhhhhCCCc-cCcccc----CCcccCCChH
Q psy14915 827 RQCRSYLTLGRETVDMFHYLTVEIKEPFLR------PELVYRLSAMLNFNLQQLCGPKC-NHLKVS----SPDKYGWDPR 895 (1046)
Q Consensus 827 r~ars~~~La~etv~ml~~lT~~i~~~Fl~------peiv~RLA~MLnynL~~LvGpk~-~~LkVk----npekY~F~Pk 895 (1046)
++|-..+.|+-..++.|++.+...|++|+. ..+.+||+..||..|.....+.. ....|+ .-++. .--
T Consensus 232 k~C~~cFeLsvsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~~lf~rvv~~~~~~le~V--~hy 309 (489)
T KOG4692|consen 232 KKCCVCFELSVSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEFFLFVRVVRRQGQPLEKV--SHY 309 (489)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhccccchhHHHHHhhcCChhhh--ccc
Confidence 678899999999999999999999999986 25689999999999988776543 222221 12222 233
Q ss_pred HHHHHHHHHHHhcC-----ch------HHHHHHhhcCccCCHHHHHHHHHH-----------------------HHHhcc
Q psy14915 896 RLLNQLVDIYLHLD-----CD------EFAAAIAQDERSFRKELFDDAADR-----------------------MERRQI 941 (1046)
Q Consensus 896 ~lL~~i~~IYlnL~-----~~------~F~~ava~D~Rsy~~elF~~a~~i-----------------------l~~~~l 941 (1046)
-+|..++.|.+||- ++ .-..-+.-|.-+|.---|+.++.. .++.|.
T Consensus 310 pil~a~~GIll~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pdpp~p~t~~~p~pd~krfal~~~~~~ 389 (489)
T KOG4692|consen 310 PILAALVGILLNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPDPPDPLTDGCPSPDDKRFALVKKLGQ 389 (489)
T ss_pred chHHHHHHHHHHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCCCCCccccCCCCCCccchHHhhhhhh
Confidence 48999999999992 11 111112233344443334444433 122222
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhhhhhcccCCCC--ccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCC
Q psy14915 942 LLPSSLDKFRALASRAHEISVANIKKEVDYNDAP--DEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQ 1019 (1046)
Q Consensus 942 ~~~~~i~~~~~l~~~v~~~~~~~~~~e~~~~~~P--def~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~ 1019 (1046)
++..++...+.+...+.+.+ ++.--.+.| ++=+|||++.=-..-|+.||||.-+..+|.+||+|+..|-|++.
T Consensus 390 ~s~~e~~~V~r~~~~l~~~~-----~~~~~~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCkt 464 (489)
T KOG4692|consen 390 LSNFESHLVNRASSQLPERK-----EESFNKDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKT 464 (489)
T ss_pred hhHHHHHHHHHHHhhcchhh-----HHhhcCCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecc
Confidence 33333333333333332222 222233445 45689999999999999999999999999999999999999988
Q ss_pred CCC
Q psy14915 1020 PLF 1022 (1046)
Q Consensus 1020 pL~ 1022 (1046)
...
T Consensus 465 Tv~ 467 (489)
T KOG4692|consen 465 TVI 467 (489)
T ss_pred eee
Confidence 765
No 7
>KOG4642|consensus
Probab=99.21 E-value=1.8e-11 Score=130.03 Aligned_cols=74 Identities=38% Similarity=0.545 Sum_probs=70.3
Q ss_pred cCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc-CCCCCCCCCCCCCCCccccHHHHHHHHHHHHHhc
Q psy14915 971 YNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKI 1044 (1046)
Q Consensus 971 ~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~-~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~ 1044 (1046)
..++||..+|-|+.+||+||||.|||.||||+.|..||.. +..||.||.||+..+++||..||..|++|++++.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999999987 5699999999999999999999999999998864
No 8
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=6.5e-06 Score=95.31 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=67.1
Q ss_pred cCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHh
Q psy14915 971 YNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043 (1046)
Q Consensus 971 ~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~ 1043 (1046)
+.++-+.+.|||+...+.+||++||||+|++.||.+|+.....||.+|.++....|.+|..|.+.|+.|...+
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 3456678999999999999999999999999999999998889999999999999999999999999998654
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.97 E-value=4.3e-06 Score=87.71 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=55.2
Q ss_pred cccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc----------------CCCCCCCCCCCCCCCccccHH
Q psy14915 969 VDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN----------------SSTDPFSRQPLFEDNLKPNEE 1031 (1046)
Q Consensus 969 ~~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~----------------~~~dPftr~pL~~~~lipn~~ 1031 (1046)
..+.+..++|.|||+.+.++|||++++||+|++.+|.+|+.. ..+||.+|.+++...++|...
T Consensus 10 ~~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 10 TTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ceeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 345677788999999999999999999999999999999852 258999999999999998643
No 10
>KOG0289|consensus
Probab=97.96 E-value=2.7e-06 Score=96.86 Aligned_cols=51 Identities=25% Similarity=0.480 Sum_probs=49.6
Q ss_pred ccchhhhhhhcCccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q psy14915 978 FRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 978 f~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lip 1028 (1046)
++|.|++++-++||+.| ||++|||+-|++|+...++||.|++||++|+|+|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeee
Confidence 57999999999999999 9999999999999999999999999999999987
No 11
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.75 E-value=9.2e-06 Score=69.78 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=31.4
Q ss_pred CccccchhhhhhhcCccccC-CCCeecHHHHHHHHhc--CCCCCCCC
Q psy14915 975 PDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLN--SSTDPFSR 1018 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~--~~~dPftr 1018 (1046)
--.+.||||...|+|||... +||+|||++|.+||.+ ...||..+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 34689999999999999976 9999999999999943 35888864
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.69 E-value=0.014 Score=64.07 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=40.7
Q ss_pred CccccchhhhhhhcCc--------cccCCCCeecHHHHHHHHhcCCCCCCCCCCCC
Q psy14915 975 PDEFRDPLMDTLMEDP--------VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLF 1022 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DP--------Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~ 1022 (1046)
.++..|||+.+-+.+| |+++|||+|++.+|.+|+...++||.+|.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4456799999876654 45669999999999999999999999999876
No 13
>KOG0823|consensus
Probab=96.60 E-value=0.0011 Score=71.29 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=49.8
Q ss_pred ccccchhhhhhhcCccccCCCCeecHHHHHHHHhc---CCCCCCCCCCCCCCCcccc
Q psy14915 976 DEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN---SSTDPFSRQPLFEDNLKPN 1029 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~---~~~dPftr~pL~~~~lipn 1029 (1046)
..|-|=|+.++-+|||++.|||-|+..+|.+||.. ...||.++..++.+.|||-
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 36889999999999999999999999999999974 4688999999999999994
No 14
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.51 E-value=0.0048 Score=67.94 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=76.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhhhhhcc---cCCCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHh-cCCCCCC
Q psy14915 942 LLPSSLDKFRALASRAHEISVANIKKEVD---YNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLL-NSSTDPF 1016 (1046)
Q Consensus 942 ~~~~~i~~~~~l~~~v~~~~~~~~~~e~~---~~~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl-~~~~dPf 1016 (1046)
+...+++.|+..-++-+.....- ++.- ..++| +.||+++.|.++||.+| ||++++..+|...|+ +|-.||-
T Consensus 240 v~qpdvqsWe~Yq~r~~a~~~~~--Dqv~k~~~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~Cpn 315 (427)
T COG5222 240 VAQPDVQSWEKYQQRTKAVAEIP--DQVYKMQPPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPN 315 (427)
T ss_pred EeccchHHHHHHHHHHHhhhhCc--hhhhccCCCCcc--ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCC
Confidence 44567788877766644433211 1121 23343 78999999999999999 999999999999887 5789998
Q ss_pred C-CCCCCCCCccccHHHHHHHHHHHHHhccC
Q psy14915 1017 S-RQPLFEDNLKPNEELKKKIEAWKREKIEK 1046 (1046)
Q Consensus 1017 t-r~pL~~~~lipn~~Lk~~I~~w~~~~~~k 1046 (1046)
+ |.-+-.|.|+|+.+-+..|+.+++++++|
T Consensus 316 C~rkdvlld~l~pD~dk~~EvE~~lkkq~~~ 346 (427)
T COG5222 316 CSRKDVLLDGLTPDIDKKLEVEKALKKQRKK 346 (427)
T ss_pred cccccchhhccCccHHHHHHHHHHHHHHHHh
Confidence 6 44577899999999999999999876543
No 15
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.31 E-value=0.0027 Score=50.15 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=32.2
Q ss_pred chhhhhhhcCc-cccCCCCeecHHHHHHHHhcCCCCCC
Q psy14915 980 DPLMDTLMEDP-VTLPSGVVMDRSVIVRHLLNSSTDPF 1016 (1046)
Q Consensus 980 cPI~~~lM~DP-Vilpsg~t~dR~~I~~hLl~~~~dPf 1016 (1046)
|||..+.+.|| |+++.||+|.++.|.+|+..+.++|.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcC
Confidence 79999999999 57889999999999999999888886
No 16
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.26 E-value=0.0025 Score=51.91 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=22.0
Q ss_pred chhhhhhhcC----ccccCCCCeecHHHHHHHHhcC
Q psy14915 980 DPLMDTLMED----PVTLPSGVVMDRSVIVRHLLNS 1011 (1046)
Q Consensus 980 cPI~~~lM~D----PVilpsg~t~dR~~I~~hLl~~ 1011 (1046)
|||+.+ |.+ ||+||+||+|.|.+|.+++.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 999 9999999999999999999754
No 17
>KOG0287|consensus
Probab=96.23 E-value=0.003 Score=70.68 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred ccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHH
Q psy14915 976 DEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKR 1041 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~ 1041 (1046)
+-+.|-|+++-++-|||+||||||+-=||..||...+.||.++.+.++.+|.-|.-|-+.|+.+.-
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999998887653
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.13 E-value=0.0038 Score=50.40 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.1
Q ss_pred chhhhhhhcCccccCCCCeecHHHHHHHHhcC
Q psy14915 980 DPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS 1011 (1046)
Q Consensus 980 cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~ 1011 (1046)
|||..++++|||.|+.||+|.++.|.+|....
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~ 32 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEP 32 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHcc
Confidence 79999999999999999999999999999653
No 19
>KOG0317|consensus
Probab=96.06 E-value=0.0042 Score=68.70 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=52.7
Q ss_pred ccCCCCcc-ccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCcc
Q psy14915 970 DYNDAPDE-FRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLK 1027 (1046)
Q Consensus 970 ~~~~~Pde-f~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~li 1027 (1046)
....+|+. +.|-|+.+-+.||--+||||+|+.++|..|+-+.+.||.+|++.+..+++
T Consensus 231 ~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 34566765 99999999999999999999999999999999999999999999988775
No 20
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.02 E-value=0.0042 Score=51.64 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=41.8
Q ss_pred ccccchhhhhhhcCccccCCCCe-ecHHHHHHHHhcCCCCCCCCCCCC
Q psy14915 976 DEFRDPLMDTLMEDPVTLPSGVV-MDRSVIVRHLLNSSTDPFSRQPLF 1022 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilpsg~t-~dR~~I~~hLl~~~~dPftr~pL~ 1022 (1046)
++..|+|..+-..|++++|.||. +....+.+|+.+..++|+.|++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35689999999999999999999 999999999999999999999875
No 21
>KOG2177|consensus
Probab=95.48 E-value=0.014 Score=62.91 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=57.5
Q ss_pred CCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q psy14915 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKRE 1042 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~ 1042 (1046)
..-+++.|||+.+.+++|+++|+||+++|.+|.++....-.||.+|. ....+.+|..|...++.....
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~--~~~~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP--PSRNLRPNVLLANLVERLRQL 76 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC--chhccCccHHHHHHHHHHHhc
Confidence 34578899999999999999999999999999999984468999996 222788999999988887654
No 22
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.77 E-value=0.0085 Score=52.64 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=32.4
Q ss_pred ccchhhhhhhcCccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHH
Q psy14915 978 FRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKI 1036 (1046)
Q Consensus 978 f~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I 1036 (1046)
..|++..++|+.||.+- +.|+|.+.+|.+.+.+ .||..+.|-+..|+.-|..|-+.|
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----HHHHHHH
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhhhhhhccC
Confidence 46999999999999877 9999999999997754 499999999999999999998766
No 23
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.75 E-value=0.021 Score=62.93 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=58.4
Q ss_pred cccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHH
Q psy14915 977 EFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKR 1041 (1046)
Q Consensus 977 ef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~ 1041 (1046)
-..|-|+..-++-||+++|||+|+-=+|.+||.+.+.||.+|.+--..-+.-+..++..|+.+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 35699999999999999999999999999999999999999999888888888888877776653
No 24
>KOG2979|consensus
Probab=93.64 E-value=0.058 Score=59.11 Aligned_cols=63 Identities=27% Similarity=0.381 Sum_probs=52.8
Q ss_pred cccchhhhhhhcCccccC-CCCeecHHHHHHHHhc--CCCCCCCCCC----CCCCCccccHHHHHHHHHH
Q psy14915 977 EFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLN--SSTDPFSRQP----LFEDNLKPNEELKKKIEAW 1039 (1046)
Q Consensus 977 ef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~--~~~dPftr~p----L~~~~lipn~~Lk~~I~~w 1039 (1046)
++.|||+......||+-. |||+|||..|...+.- .-.||.-+-+ +...-+.+..+|..+|.+=
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~~ 245 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQS 245 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHHh
Confidence 568999999999999988 9999999999999976 4688886655 4455678888999988764
No 25
>KOG0883|consensus
Probab=93.48 E-value=0.045 Score=62.59 Aligned_cols=55 Identities=31% Similarity=0.352 Sum_probs=50.9
Q ss_pred CCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q psy14915 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lip 1028 (1046)
.+|-+ .|.|+...+.|||-+++|.++|-.+|.-||...++.|.|+++|...+||+
T Consensus 37 rLP~~-hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 37 RLPFN-HCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIK 91 (518)
T ss_pred cCChh-hceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCCCCcccccccee
Confidence 44533 69999999999999999999999999999999999999999999999997
No 26
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=93.45 E-value=0.037 Score=44.67 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=32.5
Q ss_pred chhhhhhh---cCccccCCCCeecHHHHHHHHhcCCCCCCCC
Q psy14915 980 DPLMDTLM---EDPVTLPSGVVMDRSVIVRHLLNSSTDPFSR 1018 (1046)
Q Consensus 980 cPI~~~lM---~DPVilpsg~t~dR~~I~~hLl~~~~dPftr 1018 (1046)
|||..+-+ ..++.++.||+|-++.|.+|+.+..++|+.|
T Consensus 3 C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 3 CPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp ETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 77777666 3566888999999999999999999999875
No 27
>KOG3039|consensus
Probab=92.41 E-value=0.092 Score=57.03 Aligned_cols=54 Identities=17% Similarity=0.380 Sum_probs=48.8
Q ss_pred CccccchhhhhhhcCcc----ccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q psy14915 975 PDEFRDPLMDTLMEDPV----TLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPV----ilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lip 1028 (1046)
-..|+||++...+.+-+ +-|||+++...+.++.+..|..||.|..||+..++|+
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 36899999998887754 4569999999999999999999999999999999998
No 28
>KOG0297|consensus
Probab=91.87 E-value=0.13 Score=60.58 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=59.0
Q ss_pred CCCccccchhhhhhhcCcccc-CCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccc-cHHHHHHHHHHH
Q psy14915 973 DAPDEFRDPLMDTLMEDPVTL-PSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP-NEELKKKIEAWK 1040 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~DPVil-psg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lip-n~~Lk~~I~~w~ 1040 (1046)
.+.+++.||+....+.|||.. .+||.|.+.+|..|+.+.+.||-.+.+++....+| ...++..|..|-
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 356679999999999999995 79999999999999999999999999999888877 556677766653
No 29
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=91.86 E-value=0.093 Score=50.78 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=35.8
Q ss_pred CCcc-ccchhhhhhhcCccccC-CCC-----eecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q psy14915 974 APDE-FRDPLMDTLMEDPVTLP-SGV-----VMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 974 ~Pde-f~cPI~~~lM~DPVilp-sg~-----t~dR~~I~~hLl~~~~dPftr~pL~~~~lip 1028 (1046)
.|++ ..||||..+-+.=|.+. |+. -||..++.+-+..+...|.+|+|++.+|++-
T Consensus 36 C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 36 CPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp S-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred CCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 4444 55999999999999877 543 3999999999999999999999999999874
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.73 E-value=0.23 Score=56.30 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=47.0
Q ss_pred ccccchhhhh-hhcCcc----ccCCCCeecHHHHHHHHhcC-CCCCCCCCCCCCCC----ccccHHHHHHHH
Q psy14915 976 DEFRDPLMDT-LMEDPV----TLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDN----LKPNEELKKKIE 1037 (1046)
Q Consensus 976 def~cPI~~~-lM~DPV----ilpsg~t~dR~~I~~hLl~~-~~dPftr~pL~~~~----lipn~~Lk~~I~ 1037 (1046)
|+..||++.+ .-..|= +.+|||.|+++||.+++..+ +.||.++.++.... +.++..+...|+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence 5678999986 244553 23699999999999988654 58999999999877 566666655554
No 31
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=91.49 E-value=0.15 Score=40.27 Aligned_cols=37 Identities=35% Similarity=0.485 Sum_probs=32.5
Q ss_pred chhhhhhhcCcc-ccCCCCeecHHHHHHHHhc--CCCCCC
Q psy14915 980 DPLMDTLMEDPV-TLPSGVVMDRSVIVRHLLN--SSTDPF 1016 (1046)
Q Consensus 980 cPI~~~lM~DPV-ilpsg~t~dR~~I~~hLl~--~~~dPf 1016 (1046)
|||-.+.+.+|+ +++.||+|.+..|.+|+.+ ...+|.
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPL 40 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCc
Confidence 789999999999 8889999999999999983 456764
No 32
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.92 E-value=0.29 Score=54.48 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=45.9
Q ss_pred CCCccccchhhhhhhcC--c-c-ccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q psy14915 973 DAPDEFRDPLMDTLMED--P-V-TLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~D--P-V-ilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lip 1028 (1046)
.-...|+|||++.-|.. + | +-|||++|...+|.+-= .+..||.|++|.+.+|+|+
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 35678999999999954 2 3 45699999999999982 3678999999999999986
No 33
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=90.88 E-value=0.24 Score=38.56 Aligned_cols=42 Identities=33% Similarity=0.486 Sum_probs=36.5
Q ss_pred chhhhhhhcCccccC-CCCeecHHHHHHHHhc-CCCCCCCCCCC
Q psy14915 980 DPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLN-SSTDPFSRQPL 1021 (1046)
Q Consensus 980 cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~-~~~dPftr~pL 1021 (1046)
|||..+.+.+|+.++ .||.|.+..+.+|+.. ...+|..|.++
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 778888888999877 9999999999999987 67899988764
No 34
>KOG0320|consensus
Probab=90.70 E-value=0.13 Score=53.63 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=43.5
Q ss_pred ccchhhhhhhcCc--cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q psy14915 978 FRDPLMDTLMEDP--VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 978 f~cPI~~~lM~DP--Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lip 1028 (1046)
|-|||...=...= |-+.+||+|++.+|+..|....+||.+|..++..++.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 8899988666554 44569999999999999999999999999999887654
No 35
>KOG4159|consensus
Probab=90.41 E-value=0.25 Score=58.13 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=58.5
Q ss_pred cCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCC----CC-ccccHHHHHHHHHHHH
Q psy14915 971 YNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFE----DN-LKPNEELKKKIEAWKR 1041 (1046)
Q Consensus 971 ~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~----~~-lipn~~Lk~~I~~w~~ 1041 (1046)
..+++.+|.|-+++.+..+||.+||||++++.+|.+-+.....||.+|.++.. +. +.+|..++..|..|+.
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 45679999999999999999999999999999999977777899999988863 22 2347777777776654
No 36
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.59 Score=53.60 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=34.1
Q ss_pred ccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCcc
Q psy14915 990 PVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLK 1027 (1046)
Q Consensus 990 PVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~li 1027 (1046)
|=-|||||+.--+|++.|+...+|||.+|.|+--|+=-
T Consensus 313 pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~ 350 (491)
T COG5243 313 PKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSS 350 (491)
T ss_pred cccccccceeeHHHHHHHHHhccCCCcccCccccccCC
Confidence 47899999999999999999999999999998766544
No 37
>KOG0826|consensus
Probab=90.16 E-value=0.15 Score=57.54 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=47.3
Q ss_pred CCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCCCCCcc
Q psy14915 974 APDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLK 1027 (1046)
Q Consensus 974 ~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~~~~li 1027 (1046)
.|+.=.||++..=-.+|-++. ||.+++.+||-+|+.+.++||.|+-|...++++
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~ 351 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLI 351 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHH
Confidence 345567999998888888877 999999999999999999999999999877764
No 38
>KOG3039|consensus
Probab=89.54 E-value=0.19 Score=54.69 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=32.7
Q ss_pred CCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc
Q psy14915 974 APDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN 1010 (1046)
Q Consensus 974 ~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~ 1010 (1046)
|-+-=+|.|+.....||||.|.|+.|||.+|.++++.
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 4444479999999999999999999999999999975
No 39
>PHA02926 zinc finger-like protein; Provisional
Probab=88.71 E-value=0.25 Score=53.46 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=41.4
Q ss_pred CCccccchhhhhhhcC---------ccccCCCCeecHHHHHHHHhcC------CCCCCCCCCCCCCCccccH
Q psy14915 974 APDEFRDPLMDTLMED---------PVTLPSGVVMDRSVIVRHLLNS------STDPFSRQPLFEDNLKPNE 1030 (1046)
Q Consensus 974 ~Pdef~cPI~~~lM~D---------PVilpsg~t~dR~~I~~hLl~~------~~dPftr~pL~~~~lipn~ 1030 (1046)
..+|-.|+|+.+...+ +|+.++||+|+.++|.+|-... ..||++|++.+ -++|.+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSr 236 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSK 236 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eecccc
Confidence 3445679999987644 3555699999999999999753 35999999876 455543
No 40
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=0.23 Score=54.75 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=47.3
Q ss_pred cCCCC-ccccchhhhhhhcCccccCCCCeecHHHHHH-HHhcC-CCCCCCCCCCCCCCc
Q psy14915 971 YNDAP-DEFRDPLMDTLMEDPVTLPSGVVMDRSVIVR-HLLNS-STDPFSRQPLFEDNL 1026 (1046)
Q Consensus 971 ~~~~P-def~cPI~~~lM~DPVilpsg~t~dR~~I~~-hLl~~-~~dPftr~pL~~~~l 1026 (1046)
+.-+| .+|.|+|+.+-|.+|+.+|+||+|+-++|.. |=... ..||.+|+.....++
T Consensus 208 ~pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 208 LPFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred CCcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 33455 4689999999999999999999999999999 77655 569999998877665
No 41
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=87.79 E-value=0.43 Score=35.76 Aligned_cols=37 Identities=35% Similarity=0.511 Sum_probs=31.5
Q ss_pred chhhhhhhcCccccCCCCeecHHHHHHHHh-cCCCCCC
Q psy14915 980 DPLMDTLMEDPVTLPSGVVMDRSVIVRHLL-NSSTDPF 1016 (1046)
Q Consensus 980 cPI~~~lM~DPVilpsg~t~dR~~I~~hLl-~~~~dPf 1016 (1046)
|||..+..++|+++|.||.|....+.+|+. ...++|.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCC
Confidence 567777789999999999999999999998 4556775
No 42
>KOG2164|consensus
Probab=86.83 E-value=0.43 Score=56.96 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=47.9
Q ss_pred cccchhhhhhhcCccccCCCCeecHHHHHHHHhcC-----CCCCCCCCCCCCCCcccc
Q psy14915 977 EFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-----STDPFSRQPLFEDNLKPN 1029 (1046)
Q Consensus 977 ef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~-----~~dPftr~pL~~~~lipn 1029 (1046)
+..|||+..--.=||++-|||+|+-+||.+++... ..||.||..++..+|.|-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 67799999999999999999999999999999753 599999999999988774
No 43
>KOG0311|consensus
Probab=85.40 E-value=0.26 Score=56.26 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=58.1
Q ss_pred hcccCCCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhc-CCCCCCCCCCCC-CCCccccHHHHHHHHH
Q psy14915 968 EVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLN-SSTDPFSRQPLF-EDNLKPNEELKKKIEA 1038 (1046)
Q Consensus 968 e~~~~~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~-~~~dPftr~pL~-~~~lipn~~Lk~~I~~ 1038 (1046)
+.++..+--+|.|||+..|.+--..++ |+|-|++.+|..-+.+ +..||.||+.|. --.|.+++..-+.|.+
T Consensus 34 ~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~ 107 (381)
T KOG0311|consen 34 MVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISK 107 (381)
T ss_pred eecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHH
Confidence 345666778899999999999999999 9999999999999977 569999999985 4467776655555544
No 44
>KOG0802|consensus
Probab=85.13 E-value=0.42 Score=58.62 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=42.3
Q ss_pred cccchhhhhhhcC-----ccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 977 EFRDPLMDTLMED-----PVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 977 ef~cPI~~~lM~D-----PVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
+=.|+|+.+.|.. |-.+||||++-.+++.+|+...++||++|..+-.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 4479999999999 7899999999999999999999999999994443
No 45
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=84.34 E-value=0.96 Score=40.88 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=31.3
Q ss_pred chhhhhhhcCc------------cc-cCCCCeecHHHHHHHHhcCCCCCCCC
Q psy14915 980 DPLMDTLMEDP------------VT-LPSGVVMDRSVIVRHLLNSSTDPFSR 1018 (1046)
Q Consensus 980 cPI~~~lM~DP------------Vi-lpsg~t~dR~~I~~hLl~~~~dPftr 1018 (1046)
|+|..+-+.|| |. .++||.|-..+|.+||....+||+.|
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 88888777444 33 45999999999999999888999986
No 46
>KOG2660|consensus
Probab=79.18 E-value=1.1 Score=50.93 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=57.2
Q ss_pred cCCCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCCCC----CccccHHHHHHHHHH
Q psy14915 971 YNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFED----NLKPNEELKKKIEAW 1039 (1046)
Q Consensus 971 ~~~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~~~----~lipn~~Lk~~I~~w 1039 (1046)
..++-+.-.|+|+...|.|+-.+. |=|||+|++|.+||....+||.++.-+... -+.++..|++.+...
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 445667788999999999999888 999999999999999999999998877544 467777777766554
No 47
>KOG2817|consensus
Probab=76.01 E-value=2.2 Score=49.79 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=36.1
Q ss_pred ccchhhhhhhcC---ccccCCCCeecHHHHHHHHhcCC---CCCCCCCC
Q psy14915 978 FRDPLMDTLMED---PVTLPSGVVMDRSVIVRHLLNSS---TDPFSRQP 1020 (1046)
Q Consensus 978 f~cPI~~~lM~D---PVilpsg~t~dR~~I~~hLl~~~---~dPftr~p 1020 (1046)
|.|||..+-=.| |+.|+|||++.|.+|.+--.++. .||++-..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 789999977665 88999999999999999887764 78987543
No 48
>PF04641 Rtf2: Rtf2 RING-finger
Probab=71.00 E-value=3.8 Score=45.75 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=40.8
Q ss_pred ccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcCCC---CCCCCCCC-CCCCccc
Q psy14915 976 DEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSST---DPFSRQPL-FEDNLKP 1028 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~~~---dPftr~pL-~~~~lip 1028 (1046)
..+.|+|+...+.+||+.. -|+.|++.+|..||+.... -|-+..++ +..||++
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~ 90 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVE 90 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceee
Confidence 3678999999999999765 9999999999999998643 34443444 4566654
No 49
>KOG3113|consensus
Probab=70.31 E-value=5.1 Score=44.27 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=75.7
Q ss_pred CchHHHHHHhh--cCccCCHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHhh-hhhccc----CCC-Ccccc
Q psy14915 909 DCDEFAAAIAQ--DERSFRKELFDDAADRMERRQI-LLPSSLDKFRALASRAHEISVANI-KKEVDY----NDA-PDEFR 979 (1046)
Q Consensus 909 ~~~~F~~ava~--D~Rsy~~elF~~a~~il~~~~l-~~~~~i~~~~~l~~~v~~~~~~~~-~~e~~~----~~~-Pdef~ 979 (1046)
.++...+-|+. =||-|+.+-.- ..+|.+..+ ++...|..+..+++ ++-... .-+.|- .|. -..|+
T Consensus 40 tqepL~~Piv~c~lGrLYNKe~vi--~~LL~Ks~~pksaShIKslKDvve----Lklt~n~~~~gD~~~~~~D~~~a~fi 113 (293)
T KOG3113|consen 40 TQEPLRRPIVACGLGRLYNKESVI--EFLLDKSSLPKSASHIKSLKDVVE----LKLTLNPAFEGDKGNKHDDTQRARFI 113 (293)
T ss_pred ccCccccceeeehhhccccHHHHH--HHHHhcccCCcchhhhcchhhHhh----eecccCcccccccCccccccccceee
Confidence 34444444433 46889876322 234555332 35555555544443 111111 111121 121 34799
Q ss_pred chhhhhhhcCcc----ccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccc---c----HHHHHHHHHHHHH
Q psy14915 980 DPLMDTLMEDPV----TLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP---N----EELKKKIEAWKRE 1042 (1046)
Q Consensus 980 cPI~~~lM~DPV----ilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lip---n----~~Lk~~I~~w~~~ 1042 (1046)
|||++--|.+-- +-+||++|.-+++.+. ...+|+.++++...+|+|+ + .-||.+.++-.++
T Consensus 114 CPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg~~E~~dllk~rme~~kak 185 (293)
T KOG3113|consen 114 CPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNGTEEDVDLLKTRMEERKAK 185 (293)
T ss_pred cccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999864 5669999999988887 3679999999999999886 2 2355565554443
No 50
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=68.67 E-value=3.4 Score=33.52 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=30.5
Q ss_pred chhhhhhh---cCccccCCCCeecHHHHHHHHhcCCCCCCCCC
Q psy14915 980 DPLMDTLM---EDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQ 1019 (1046)
Q Consensus 980 cPI~~~lM---~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~ 1019 (1046)
||+.+.-. .-|++++.||++..+.|.++......+|+.|+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 34444444 34788999999999999999855679999874
No 51
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.86 E-value=5.1 Score=45.29 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=29.1
Q ss_pred cccCCCCeecHHHHHHHHhc-CCCCCCCCCCCCC
Q psy14915 991 VTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFE 1023 (1046)
Q Consensus 991 Vilpsg~t~dR~~I~~hLl~-~~~dPftr~pL~~ 1023 (1046)
++|||.|.+-++||.+|+.. ...||.+|.++..
T Consensus 340 ~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 340 RVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred EEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 36899999999999999985 6799999999863
No 52
>KOG1785|consensus
Probab=64.63 E-value=2.7 Score=48.80 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=38.5
Q ss_pred cchhhhhhhcCccccCCCCeecHHHHHHHHhcC--CCCCCCCCCCC
Q psy14915 979 RDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS--STDPFSRQPLF 1022 (1046)
Q Consensus 979 ~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~--~~dPftr~pL~ 1022 (1046)
+|-|+.+==+|=-|-||||-++-+|+..|=.++ ++|||+|-.+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 588888888888889999999999999998664 79999998765
No 53
>KOG0978|consensus
Probab=64.09 E-value=2.8 Score=52.41 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=46.7
Q ss_pred ccchhhhhhhcCccccCCCCeecHHHHHHHHhc-CCCCCCCCCCCCCCCccc
Q psy14915 978 FRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 978 f~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~-~~~dPftr~pL~~~~lip 1028 (1046)
..||.+.+=.+|-||+.|||+|+-.||..-+.. ..+||-|+.+-...|+.|
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 569999999999999999999999999999965 679999999999888866
No 54
>KOG4367|consensus
Probab=63.33 E-value=3.1 Score=48.68 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=31.5
Q ss_pred ccccchhhhhhhcCccccCCCCeecHHHHHHHHhc
Q psy14915 976 DEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN 1010 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~ 1010 (1046)
+|+.|||+....+||+|||+||..+|.+-..-+-+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 57889999999999999999999999998877654
No 55
>KOG0824|consensus
Probab=62.12 E-value=3.8 Score=46.28 Aligned_cols=45 Identities=18% Similarity=-0.021 Sum_probs=42.0
Q ss_pred chhhhhhhcCccccCCCCeecHHHHHHHHhcC-CCCCCCCCCCCCC
Q psy14915 980 DPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFED 1024 (1046)
Q Consensus 980 cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~-~~dPftr~pL~~~ 1024 (1046)
|+|++.-|.-||.++++|.++.-+|+--..++ .+||.+|.|++.+
T Consensus 10 C~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 10 CLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred ceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 99999999999999999999999999998887 5799999999865
No 56
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.72 E-value=11 Score=42.84 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=36.5
Q ss_pred cccchhhhhhhcC---ccccCCCCeecHHHHHHHHhcC---CCCCCCCCC
Q psy14915 977 EFRDPLMDTLMED---PVTLPSGVVMDRSVIVRHLLNS---STDPFSRQP 1020 (1046)
Q Consensus 977 ef~cPI~~~lM~D---PVilpsg~t~dR~~I~~hLl~~---~~dPftr~p 1020 (1046)
-|.||...++-+| ||++.|||++-+.+..+.-.++ -.||++-.-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 3899999988766 8999999999999999887775 478887543
No 57
>KOG0396|consensus
Probab=47.85 E-value=9 Score=44.57 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=40.1
Q ss_pred ccchhhhhhhcC---ccccCCCCeecHHHHHHHHhcC-CCCCCCCCCCCCCC
Q psy14915 978 FRDPLMDTLMED---PVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDN 1025 (1046)
Q Consensus 978 f~cPI~~~lM~D---PVilpsg~t~dR~~I~~hLl~~-~~dPftr~pL~~~~ 1025 (1046)
.+|-|++.+|.| |++.|+|++|--.+|++|=..+ =.||.++.-....+
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 468899999987 9999999999999999997666 48999887665543
No 58
>KOG4628|consensus
Probab=46.19 E-value=14 Score=43.16 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=37.1
Q ss_pred ccchhhhhhhcC--cc-ccCCCCeecHHHHHHHHhcCC-CCCCCCCCCC
Q psy14915 978 FRDPLMDTLMED--PV-TLPSGVVMDRSVIVRHLLNSS-TDPFSRQPLF 1022 (1046)
Q Consensus 978 f~cPI~~~lM~D--PV-ilpsg~t~dR~~I~~hLl~~~-~dPftr~pL~ 1022 (1046)
+.|.|+.+-.++ =| +|||+|.|-..+|..||.... .||.+++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 679998876653 33 899999999999999998875 5999988653
No 59
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=44.07 E-value=1e+02 Score=34.63 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=61.2
Q ss_pred CCccchHHHHHHHHhcccCCCchhhHHHhhhCcccCCCCccchhhhhhhhhcccccccccCcCCCcchhhhhccCCcccc
Q psy14915 286 PDYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSISVFAEDDVKVGNHFFSSVTD 365 (1046)
Q Consensus 286 ~~~~~~l~~l~~L~~~~~~~~~kpia~~l~~~~~f~p~~~~~~~g~~~e~~SlLGpff~lS~l~~~~p~v~~~yF~~~~~ 365 (1046)
+.|...+.++..|.+++-...+.||.+++.+.++++ ...-| ++-. .-|+.+|.- +.+.+++.-..|..++.
T Consensus 54 ~~~~~~~~a~~LLaq~re~~A~~~li~l~~~~~~~~----~~l~G-D~~t-E~l~~ilas--v~~G~~~~L~~li~~~~- 124 (249)
T PF06685_consen 54 EEYNLHFYALYLLAQFREERALPPLIRLFSQDDDFL----EDLFG-DFIT-EDLPRILAS--VGDGDIEPLKELIEDPD- 124 (249)
T ss_pred cchHHHHHHHHHHHHHhhhhhHHHHHHHHcCCcchH----HHHHc-chhH-hHHHHHHHH--HhCCCHHHHHHHHhCCc-
Confidence 345556888888888776555889999887766543 11222 1110 111111100 00111222222222221
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHhhhhhhh
Q psy14915 366 LNNKSIQATLQNGLQLTRGFLYRICHTMLR-NNPTRETMLGYLAALVGHNEKRAQ 419 (1046)
Q Consensus 366 ~~~~~~~~slq~~l~~~~~~L~~I~~~Llr-~~~sRe~~L~w~a~~l~~N~~R~~ 419 (1046)
+ -.-+|......+-.+.. ++..|+.+.+||...++.+.+|..
T Consensus 125 -----~-------~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~ 167 (249)
T PF06685_consen 125 -----A-------DEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNP 167 (249)
T ss_pred -----H-------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCc
Confidence 1 11234445555555655 899999999999999998887653
No 60
>KOG1813|consensus
Probab=43.12 E-value=12 Score=42.40 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=50.1
Q ss_pred cccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHH
Q psy14915 969 VDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKK 1035 (1046)
Q Consensus 969 ~~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~ 1035 (1046)
++...+|. .|-|+..-..+||++.|||.|+-.+-.+++..+..|+.+.++..- -.-+..+|...
T Consensus 235 ~D~~~~Pf--~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g-~~~~akeL~~~ 298 (313)
T KOG1813|consen 235 EDIELLPF--KCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG-SFNVAKELLVS 298 (313)
T ss_pred CCcccCCc--cccccccccccchhhcCCceeehhhhccccccCCcceeccccccc-ccchHHHHHHH
Confidence 34555664 599999999999999999999999999999999999999887532 22344444443
No 61
>KOG1002|consensus
Probab=42.58 E-value=13 Score=44.84 Aligned_cols=55 Identities=22% Similarity=0.088 Sum_probs=47.6
Q ss_pred cccchhhhhhhcCccccCCCCeecHHHHHHHHhc-----CCCCCCCCCCCCCCCccccHH
Q psy14915 977 EFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-----SSTDPFSRQPLFEDNLKPNEE 1031 (1046)
Q Consensus 977 ef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~-----~~~dPftr~pL~~~~lipn~~ 1031 (1046)
+-.|-|+.+.-+||+...|.|+++|.||..+..+ +-+||.|-.+|+.|.-.|..+
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ale 595 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALE 595 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhh
Confidence 4569999999999999999999999999988863 469999999999997666443
No 62
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=42.35 E-value=19 Score=30.36 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=26.7
Q ss_pred ccchhhhhhhcCccccC-CCC--eecHHHHHHHHhcCC--CCCCCCCC
Q psy14915 978 FRDPLMDTLMEDPVTLP-SGV--VMDRSVIVRHLLNSS--TDPFSRQP 1020 (1046)
Q Consensus 978 f~cPI~~~lM~DPVilp-sg~--t~dR~~I~~hLl~~~--~dPftr~p 1020 (1046)
+.|||+++.|+-||--- +.| .||-.+...+-.+.+ .||++++|
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 57999999999999876 666 499877776665543 79998875
No 63
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=41.44 E-value=19 Score=33.94 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=33.0
Q ss_pred chhhhhhhcC-ccccC-CCCeecHHHHHHHHhc---CCCCCCCCCCCCC
Q psy14915 980 DPLMDTLMED-PVTLP-SGVVMDRSVIVRHLLN---SSTDPFSRQPLFE 1023 (1046)
Q Consensus 980 cPI~~~lM~D-PVilp-sg~t~dR~~I~~hLl~---~~~dPftr~pL~~ 1023 (1046)
||.....=.| |++.- +||.|-..+|.+||.+ .++||..|++-..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4443333333 76666 9999999999999975 4799999998654
No 64
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=28.86 E-value=4.8e+02 Score=28.85 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhHHhcCCCCc-hHHHHHHHHHHHHHHhhhhCCCccCcc
Q psy14915 805 AAYAAIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLR-PELVYRLSAMLNFNLQQLCGPKCNHLK 883 (1046)
Q Consensus 805 ~~w~~l~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~lT~~i~~~Fl~-peiv~RLA~MLnynL~~LvGpk~~~Lk 883 (1046)
+.|-.|++++|+...+--+...+..---..+|.+-+.+=...-.++-.+|+- +...+||..++...=.++-.- -
T Consensus 38 G~~v~L~~~Q~q~l~~Y~~~lr~~lP~~~~~a~d~l~la~~ald~V~~~~~g~~~~~~~l~~l~~~l~~~~~~~-----~ 112 (229)
T PF11101_consen 38 GKKVSLNAEQQQALQQYQQGLRQQLPWVVQLASDGLELARDALDEVATSLLGDSNARDRLKQLMDQLKQQVDRR-----F 112 (229)
T ss_pred CEEccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH-----h
Confidence 5688999999987776666666666666677777777777777777778888 899999998887765444321 1
Q ss_pred ccCCcccCCChHHHH
Q psy14915 884 VSSPDKYGWDPRRLL 898 (1046)
Q Consensus 884 VknpekY~F~Pk~lL 898 (1046)
-++...|-|.|..+=
T Consensus 113 ~~~~d~~~l~~~~~~ 127 (229)
T PF11101_consen 113 YQRGDGFVLHAQAFS 127 (229)
T ss_pred eeCCCcEEEcHHHHH
Confidence 124555666665543
No 65
>KOG1001|consensus
Probab=27.69 E-value=63 Score=41.15 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=73.0
Q ss_pred HHHHHHHHhcC---chHHHHHHhhcCccCCHHHHHHHHHHHHHhccCChhhHHHHH-----HHHHHHHH-HHHHhhhhhc
Q psy14915 899 NQLVDIYLHLD---CDEFAAAIAQDERSFRKELFDDAADRMERRQILLPSSLDKFR-----ALASRAHE-ISVANIKKEV 969 (1046)
Q Consensus 899 ~~i~~IYlnL~---~~~F~~ava~D~Rsy~~elF~~a~~il~~~~l~~~~~i~~~~-----~l~~~v~~-~~~~~~~~e~ 969 (1046)
....+.|-++. +..|-..+..+...++...|.+..-+++..---+...+.+.. ..+..+.. +... .
T Consensus 377 ~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~-----l 451 (674)
T KOG1001|consen 377 KSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVD-----L 451 (674)
T ss_pred HhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHH-----H
Confidence 34556677772 446777776666666766666665555443222222222221 11111111 1111 1
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc--CCCCCCCCCCCCCCCccc
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN--SSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~--~~~dPftr~pL~~~~lip 1028 (1046)
..+ +-|+|..+ -.+||+++|||..+++++...+.. +..||.+|..+..+.+..
T Consensus 452 ~~~-----~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 452 SVS-----HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred hhc-----cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 111 78999999 899999999999999999999964 457999998888766655
No 66
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.77 E-value=1.1e+02 Score=29.92 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHhhhhhhh
Q psy14915 379 LQLTRGFLYRICHTMLR-NNPTRETMLGYLAALVGHNEKRAQ 419 (1046)
Q Consensus 379 l~~~~~~L~~I~~~Llr-~~~sRe~~L~w~a~~l~~N~~R~~ 419 (1046)
|...+...|..|+.|-+ +.-+|.+.-.|||..|.++.....
T Consensus 59 lR~~R~~ah~~fd~lw~~~~~~R~~aY~wLA~~lgi~~~~cH 100 (102)
T PF11672_consen 59 LRRARKAAHRAFDPLWQSGHMSRSDAYRWLAKKLGIPVEECH 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHcCCChHhcc
Confidence 66778889999999998 456899999999999988765543
No 67
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=23.59 E-value=58 Score=33.23 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=33.7
Q ss_pred ccchhhhhhhcC--ccc-cCCCCe------ecHHHHHHHHhcCCCCCCCCCC
Q psy14915 978 FRDPLMDTLMED--PVT-LPSGVV------MDRSVIVRHLLNSSTDPFSRQP 1020 (1046)
Q Consensus 978 f~cPI~~~lM~D--PVi-lpsg~t------~dR~~I~~hLl~~~~dPftr~p 1020 (1046)
.-|.|+..-..+ =|| +++|.+ +.-++++||=.+..+|||+|.-
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~I 78 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRNI 78 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccce
Confidence 349999977666 554 667765 7789999998778999999974
No 68
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=22.86 E-value=60 Score=35.90 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=47.9
Q ss_pred ccchhhhhhhcCccccC-CCCeecHHHHHHHHhc--CCCCCC--CCCCCCCCCccccH--HHHHHHHHHH
Q psy14915 978 FRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLN--SSTDPF--SRQPLFEDNLKPNE--ELKKKIEAWK 1040 (1046)
Q Consensus 978 f~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~--~~~dPf--tr~pL~~~~lipn~--~Lk~~I~~w~ 1040 (1046)
-.|||+...-.-|.+.. +.|.|||..|...|.- ...||- +-+.+..+.++-++ |+|.+|..-+
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir 259 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIR 259 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHH
Confidence 35999999999999977 9999999999999984 457774 66777777776555 4454554433
No 69
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=22.36 E-value=54 Score=30.59 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=27.2
Q ss_pred ccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCC
Q psy14915 990 PVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLF 1022 (1046)
Q Consensus 990 PVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~ 1022 (1046)
||.-- +.|.|--.+|.|||.+.+.||..|++-.
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 34444 7788999999999999999999998743
No 70
>KOG0828|consensus
Probab=20.01 E-value=53 Score=39.73 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.9
Q ss_pred ccccCCCCeecHHHHHHHHhc-CCCCCCCCCCCCC
Q psy14915 990 PVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFE 1023 (1046)
Q Consensus 990 PVilpsg~t~dR~~I~~hLl~-~~~dPftr~pL~~ 1023 (1046)
=.++||.|+|-|+|+++|... .-.||.+|.||..
T Consensus 601 Ym~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 601 YMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346789999999999999985 4599999999863
Done!