Query psy14915
Match_columns 1046
No_of_seqs 283 out of 1147
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:13:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 100.0 9E-216 3E-220 1944.1 84.3 910 110-1046 6-961 (968)
2 2kre_A Ubiquitin conjugation f 99.8 8.7E-22 3E-26 184.8 -0.4 93 954-1046 6-98 (100)
3 2kr4_A Ubiquitin conjugation f 99.8 1.8E-20 6.2E-25 170.6 5.7 81 966-1046 3-83 (85)
4 1wgm_A Ubiquitin conjugation f 99.8 1.1E-19 3.8E-24 169.8 6.2 81 965-1045 10-91 (98)
5 2f42_A STIP1 homology and U-bo 99.7 1.5E-17 5E-22 171.1 9.0 93 944-1044 81-174 (179)
6 2c2l_A CHIP, carboxy terminus 99.6 1.9E-15 6.5E-20 163.3 7.2 76 969-1044 200-276 (281)
7 2yu4_A E3 SUMO-protein ligase 99.5 1.7E-15 5.8E-20 140.2 3.6 73 973-1045 3-85 (94)
8 2bay_A PRE-mRNA splicing facto 99.5 5.6E-15 1.9E-19 126.5 1.5 55 977-1031 3-58 (61)
9 1t1h_A Gspef-atpub14, armadill 99.4 8.6E-14 2.9E-18 123.4 4.8 73 972-1044 3-76 (78)
10 3ztg_A E3 ubiquitin-protein li 99.0 4.7E-10 1.6E-14 102.3 7.9 74 970-1043 6-83 (92)
11 3htk_C E3 SUMO-protein ligase 98.9 5.2E-10 1.8E-14 120.6 2.8 77 966-1042 170-251 (267)
12 3fl2_A E3 ubiquitin-protein li 98.7 2.5E-09 8.5E-14 103.1 2.0 70 973-1042 48-119 (124)
13 2y43_A E3 ubiquitin-protein li 98.7 6.5E-09 2.2E-13 96.2 3.3 73 972-1044 17-90 (99)
14 1z6u_A NP95-like ring finger p 98.6 1.1E-08 3.8E-13 102.3 3.5 71 972-1042 73-145 (150)
15 2ckl_A Polycomb group ring fin 98.4 7.8E-08 2.7E-12 90.4 3.7 70 972-1041 10-84 (108)
16 3hct_A TNF receptor-associated 98.4 7.4E-08 2.5E-12 92.2 3.3 70 970-1039 11-81 (118)
17 2csy_A Zinc finger protein 183 98.4 2.2E-07 7.6E-12 82.7 5.3 66 972-1038 10-75 (81)
18 2ecw_A Tripartite motif-contai 98.4 4.4E-08 1.5E-12 87.1 0.5 66 970-1035 12-83 (85)
19 2egp_A Tripartite motif-contai 98.4 2E-08 7E-13 88.5 -2.5 65 971-1035 6-77 (79)
20 2ecv_A Tripartite motif-contai 98.3 5.4E-08 1.9E-12 86.5 -0.1 66 970-1035 12-83 (85)
21 1jm7_A BRCA1, breast cancer ty 98.3 1.7E-07 5.8E-12 88.1 3.0 67 976-1042 20-89 (112)
22 2ckl_B Ubiquitin ligase protei 98.3 1.7E-07 5.8E-12 94.6 2.9 71 972-1042 49-122 (165)
23 2djb_A Polycomb group ring fin 98.3 6.1E-07 2.1E-11 78.2 5.6 62 969-1030 7-69 (72)
24 2yur_A Retinoblastoma-binding 98.3 3.7E-07 1.3E-11 80.1 4.1 62 969-1030 7-72 (74)
25 1jm7_B BARD1, BRCA1-associated 98.3 2.1E-07 7.2E-12 88.8 2.4 67 975-1043 20-87 (117)
26 4ayc_A E3 ubiquitin-protein li 98.2 8.5E-07 2.9E-11 87.1 5.6 64 975-1040 51-114 (138)
27 2ecy_A TNF receptor-associated 98.2 9.4E-07 3.2E-11 75.6 5.0 57 970-1026 8-65 (66)
28 3lrq_A E3 ubiquitin-protein li 98.2 5.3E-07 1.8E-11 83.9 3.3 67 974-1040 19-87 (100)
29 3hcs_A TNF receptor-associated 98.2 6.2E-07 2.1E-11 90.8 3.9 70 970-1039 11-81 (170)
30 3l11_A E3 ubiquitin-protein li 98.2 2.1E-07 7.2E-12 88.3 -0.2 71 972-1042 10-88 (115)
31 2ysl_A Tripartite motif-contai 98.1 2.1E-06 7.4E-11 74.4 4.5 57 970-1026 13-72 (73)
32 1rmd_A RAG1; V(D)J recombinati 98.0 1.3E-06 4.4E-11 83.0 2.4 66 973-1038 19-86 (116)
33 3knv_A TNF receptor-associated 97.9 1.2E-06 4.2E-11 86.7 0.1 67 972-1038 26-102 (141)
34 3ng2_A RNF4, snurf, ring finge 97.9 6.8E-06 2.3E-10 70.7 3.6 56 974-1029 7-69 (71)
35 2ct2_A Tripartite motif protei 97.8 1.4E-05 4.8E-10 71.5 4.6 62 969-1030 7-78 (88)
36 1g25_A CDK-activating kinase a 97.8 1.8E-05 6.2E-10 67.3 4.9 54 976-1029 2-61 (65)
37 2xeu_A Ring finger protein 4; 97.8 8.4E-06 2.9E-10 68.5 2.7 54 976-1029 2-62 (64)
38 2d8t_A Dactylidin, ring finger 97.7 4.7E-06 1.6E-10 72.3 0.3 54 973-1026 11-64 (71)
39 2ysj_A Tripartite motif-contai 97.7 4E-05 1.4E-09 64.7 4.9 48 970-1017 13-63 (63)
40 2ea6_A Ring finger protein 4; 97.6 4.1E-05 1.4E-09 65.2 3.9 53 971-1023 9-68 (69)
41 2ect_A Ring finger protein 126 97.5 4.7E-05 1.6E-09 66.9 4.0 59 972-1030 10-71 (78)
42 4ap4_A E3 ubiquitin ligase RNF 97.4 7.7E-05 2.6E-09 71.3 3.1 55 975-1029 5-66 (133)
43 2ecj_A Tripartite motif-contai 97.2 0.00016 5.5E-09 59.6 3.3 47 970-1016 8-57 (58)
44 2kiz_A E3 ubiquitin-protein li 97.1 0.00034 1.2E-08 59.9 4.3 53 972-1024 9-64 (69)
45 1chc_A Equine herpes virus-1 r 97.1 0.00026 8.8E-09 60.4 3.0 48 976-1023 4-52 (68)
46 2ecn_A Ring finger protein 141 97.0 9.3E-05 3.2E-09 63.6 0.0 56 970-1026 8-63 (70)
47 2ecm_A Ring finger and CHY zin 96.9 0.00037 1.3E-08 56.8 2.8 47 976-1022 4-54 (55)
48 2y1n_A E3 ubiquitin-protein li 96.9 0.00027 9.1E-09 80.7 2.4 52 976-1027 331-383 (389)
49 2ep4_A Ring finger protein 24; 96.8 0.00085 2.9E-08 58.2 4.4 54 971-1024 9-65 (74)
50 2l0b_A E3 ubiquitin-protein li 96.8 0.00068 2.3E-08 61.7 3.7 51 973-1023 36-89 (91)
51 1iym_A EL5; ring-H2 finger, ub 96.8 0.00058 2E-08 55.7 2.9 48 975-1022 3-54 (55)
52 1x4j_A Ring finger protein 38; 96.7 0.00092 3.2E-08 58.3 3.4 50 975-1024 21-73 (75)
53 1bor_A Transcription factor PM 96.5 0.00059 2E-08 56.6 1.0 48 975-1025 4-51 (56)
54 4ap4_A E3 ubiquitin ligase RNF 96.5 0.00083 2.8E-08 64.1 1.8 55 975-1029 70-131 (133)
55 4ic3_A E3 ubiquitin-protein li 96.3 0.00027 9.2E-09 62.1 -2.5 44 976-1023 23-67 (74)
56 1e4u_A Transcriptional repress 96.2 0.0035 1.2E-07 55.9 4.4 55 972-1026 6-65 (78)
57 1v87_A Deltex protein 2; ring- 96.2 0.0038 1.3E-07 58.6 4.5 49 975-1023 23-94 (114)
58 2ecg_A Baculoviral IAP repeat- 95.7 0.003 1E-07 55.4 1.3 44 977-1024 25-69 (75)
59 3t6p_A Baculoviral IAP repeat- 95.2 0.014 4.8E-07 65.8 5.0 45 975-1023 293-338 (345)
60 2ecl_A Ring-box protein 2; RNF 95.2 0.0069 2.4E-07 53.9 2.0 49 977-1025 15-78 (81)
61 2vje_A E3 ubiquitin-protein li 95.1 0.01 3.6E-07 50.5 2.7 47 976-1022 7-56 (64)
62 2vje_B MDM4 protein; proto-onc 94.5 0.015 5.1E-07 49.4 2.3 46 977-1022 7-55 (63)
63 2yho_A E3 ubiquitin-protein li 94.4 0.0032 1.1E-07 56.1 -2.3 44 976-1023 17-61 (79)
64 2kkx_A Uncharacterized protein 93.1 0.053 1.8E-06 50.2 3.3 54 975-1028 25-84 (102)
65 3dpl_R Ring-box protein 1; ubi 93.0 0.054 1.9E-06 51.0 3.4 45 979-1023 39-101 (106)
66 1wim_A KIAA0161 protein; ring 92.7 0.026 8.9E-07 51.3 0.6 66 975-1041 3-83 (94)
67 2ea5_A Cell growth regulator w 91.8 0.08 2.8E-06 45.7 2.6 46 974-1023 12-58 (68)
68 4a0k_B E3 ubiquitin-protein li 91.1 0.049 1.7E-06 52.3 0.6 45 979-1023 50-112 (117)
69 2d8s_A Cellular modulator of i 90.2 0.14 4.9E-06 45.6 2.7 50 976-1025 14-72 (80)
70 4fo9_A E3 SUMO-protein ligase 90.0 0.31 1.1E-05 55.0 5.9 66 972-1037 210-280 (360)
71 3i2d_A E3 SUMO-protein ligase 89.2 0.32 1.1E-05 55.1 5.2 63 975-1037 247-314 (371)
72 2ct0_A Non-SMC element 1 homol 65.3 5 0.00017 35.3 3.7 45 979-1023 17-64 (74)
73 3k1l_B Fancl; UBC, ring, RWD, 65.0 0.99 3.4E-05 50.7 -1.0 45 979-1023 310-373 (381)
74 1vyx_A ORF K3, K3RING; zinc-bi 35.0 36 0.0012 28.3 4.0 45 979-1023 8-59 (60)
75 3zs9_C Golgi to ER traffic pro 30.7 28 0.00097 26.8 2.3 20 1-20 1-24 (38)
76 2fd4_A Avirulence protein AVRP 28.0 34 0.0012 31.8 2.9 59 967-1025 28-112 (122)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=100.00 E-value=8.8e-216 Score=1944.15 Aligned_cols=910 Identities=27% Similarity=0.433 Sum_probs=828.9
Q ss_pred HHHHHHHHHheeeeccCCCCCCeeeccchHHHHHHhhcCCccCChHHHHHHHHHHHhhhhhccCcccchhhhHHHHHHHH
Q psy14915 110 IIENTICKILSVTYSQVDASNTILYLPQVASVLTELKQNSVTITYQDLISQSLVELQDILLSKNNTCVLGHYTASYARVF 189 (1046)
Q Consensus 110 ~~~~~l~~If~vTl~~~~~~~~lvyL~~la~el~e~~~~~~~l~~~d~l~~~l~e~~~~~~~p~~~~~~~YL~~c~~R~~ 189 (1046)
..-.+|++||+||+|+.. .++.+||+ ++|| . ++.+++ .|.+|++|||+++.. |+.+.||+||++||+||.
T Consensus 6 ~~~~~l~~if~vtl~~~~-~~~~~~~~--~~el---~-~~~~l~-~d~ld~~l~e~ls~~--~~~~~p~~YL~~c~~R~~ 75 (968)
T 3m62_A 6 RSMTAIEDILQITTDPSD-TRGYSLLK--SEEV---P-QGSTLG-VDFIDTLLLYQLTEN--EKLDKPFEYLNDCFRRNQ 75 (968)
T ss_dssp HHHHHHHHHHTEESSCCS-SSSCEECC--SCST---T-CCSCCC-GGGHHHHHHHHHHTC--SSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHeeecCccc-cCCceEee--HHHh---c-cCCCCC-hhhHHHHHHHHHhcC--CCCCCcHHHHHHHHHHHH
Confidence 345679999999999864 45677777 6666 2 334688 599999999999864 444689999999999999
Q ss_pred HHHhhCCCCCCCcchHHHHHHHHHHHHhhhhhhccccCCCCCC--ccchhhhh-hCCCChhHHHHHHHHHhcChhhHHHh
Q psy14915 190 EEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDPMS--SPLVKPLI-NQTLPNGFLSDFVCTLYEDEETFKQV 266 (1046)
Q Consensus 190 ~~~r~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l~~~~~~~~~--~~ll~~~l-~~~l~~~Fl~e~v~~~~~d~~~l~~i 266 (1046)
+++|+.+++....++.++++++++||||||++++++|++.+.+ ..++..++ ..+.+.+||.|+++|+++|++ +.++
T Consensus 76 ~~~r~~~~~~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~~~~~~~~ll~~~~~~~~FL~~~i~r~~~d~~-l~~~ 154 (968)
T 3m62_A 76 QQKRITKNKPNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGAFINYITGIVSNVNSYTDFLSQIIQRAILEGT-ALDL 154 (968)
T ss_dssp HHHHHHHTSTTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCCHHHHHHHHHHTGGGTHHHHHHHHHHHHHHTC-HHHH
T ss_pred HHHHhcccCCCchHHHHHHHHHHHHHHHhHHHHhcCCccCCCCchHHHHHHHHhcccchHHHHHHHHHHhhhccc-HHHH
Confidence 9998876655667899999999999999999999999987654 22343333 335667999999999987653 5556
Q ss_pred HHHHH----HHHHHHhhccCcCCCC-ccchHHHHHHHHhcccCCCchhhHHHhhhCcccCCCCccchhhhhhhhhccccc
Q psy14915 267 MSPIL----QGVYKAMTEASIADPD-YSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGP 341 (1046)
Q Consensus 267 f~~i~----~~l~~~~~~~~l~~~~-~~~~l~~l~~L~~~~~~~~~kpia~~l~~~~~f~p~~~~~~~g~~~e~~SlLGp 341 (1046)
|+|+| ..++..+.+++++++. |+.++.+|..|+++ ||||++|+++|+|+|+ ...+|++||+.|+|||
T Consensus 155 ~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~------kpia~~l~~~~~f~P~--~~~~g~~~E~~tlLGp 226 (968)
T 3m62_A 155 LNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTF------KPIAEIFTKIDGFFAD--YSCKPQDFERKTILGP 226 (968)
T ss_dssp HHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTS------HHHHHHGGGSTTSSCC--TTCCGGGHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHhCc------cHHHHHHHcCcccCCC--CCccHHHHHHHHhHHh
Confidence 55555 4557777888888764 88899999999975 8999999999999998 4578999999999999
Q ss_pred ccccCcCCCcchhhhhccCCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHhhhhh
Q psy14915 342 FFSISVFAEDDVKVGNHFFSSVTDLN---NKSIQATLQNGLQLTRGFLYRICHTMLR-NNPTRETMLGYLAALVGHNEKR 417 (1046)
Q Consensus 342 ff~lS~l~~~~p~v~~~yF~~~~~~~---~~~~~~slq~~l~~~~~~L~~I~~~Llr-~~~sRe~~L~w~a~~l~~N~~R 417 (1046)
||++||+ +|+|+.+||+++.+++ ++++++++|++++.++++||+|+++||| |+++|+++|+|||+|||+||+|
T Consensus 227 ~f~lS~l---~~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~~I~~~llr~s~etR~~~L~w~a~~ln~N~~R 303 (968)
T 3m62_A 227 ILSLSPI---EAAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLR 303 (968)
T ss_dssp HHTCCTT---SHHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCGGG
T ss_pred hhhcccC---CcchHhhcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHhCcHH
Confidence 9999999 7899999999988776 7788999999999999999999999999 8999999999999999999999
Q ss_pred hhhcccccCccchhhHHhHHHHHHHhhccc------ccCcccCCCcCCCCCCccccCCccccccCChHHHHHHHhhccCC
Q psy14915 418 AQLQSEESTLAGDGFMLNLLAVFQALSDKI------DLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSST 491 (1046)
Q Consensus 418 ~~~q~d~~~~aSDGFmlNl~~VL~rLc~p~------Ki~kID~~Y~~~~~~~~rvdi~~ETrlna~~~e~~~~~~~~~~~ 491 (1046)
|+||+|+.++||||||+|+++||+|||+|| |+||||++|+++.++ |+||++|||||+|++|+++||++....
T Consensus 304 ~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~~~--ridi~~ETrlna~~~e~~~~~~~~~~~ 381 (968)
T 3m62_A 304 RADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSL--FIDLSGETRLNSDFKEADAFYDKNRKT 381 (968)
T ss_dssp GSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSCCS--SSCCTTCCBSSCCHHHHHHHHHHHCCC
T ss_pred HhcCCCccccCccHHHHHHHHHHHHhhhhhccccccchheeChhhcCCCCC--CCCCChhhhhcCCHHHHHHHHhhcccC
Confidence 999999999999999999999999999996 999999999887665 899999999999999999999875443
Q ss_pred CCCCCCcchhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcchhccccchHhHH-hHHHHHHHHHHHHHHHH
Q psy14915 492 AWREPKFSSTCWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARR-NKDFLKRWKHQIKKLSR 570 (1046)
Q Consensus 492 ~~~~~nFitecFFLTl~~~HlG~~~~~~~~~~~~r~l~~l~~~~~~l~~~~~~~~~~P~~~~-~~~~l~~~~~~l~~l~~ 570 (1046)
.++++||||||||||++|||||+++++.+|+++.|+|+++++.++++++. |+++|.+.+ .++.+++++++++++.+
T Consensus 382 ~~~~~nFItecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~---~~~~p~~~~~~~~~l~~~~~~l~~~~~ 458 (968)
T 3m62_A 382 ADSKPNFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKI---AANHDVFARFITAQLSKMEKALKTTES 458 (968)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTC---CCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999975 677887666 47899999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCcccCCCCC----------------CCCccccccchHHH
Q psy14915 571 SKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEEN--LCNITLPLPS----------------TVRPEFAALPEWYV 632 (1046)
Q Consensus 571 ~~~~~~~~L~dp~~l~~~l~F~~~~~~wL~rl~~~~~~--~~~~~lPLp~----------------~~p~~f~~lPE~~v 632 (1046)
.++|++++|+||.++.++++|++++++||+|++++.+. ..+++||||+ ++|++|+|+|||+|
T Consensus 459 ~k~~~~~~l~d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~i 538 (968)
T 3m62_A 459 LRFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVV 538 (968)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCCCccccccccccchhcccccCChHHhhCcHHHH
Confidence 99999999999999999999999999999999976543 3368899983 58999999999999
Q ss_pred HHHHHHHHHHHhhCCCcc--hhhhhHHHHHHHHHhCCCCCccChhhhhhHHHHhhhc-CCCCCCcchhHHHHHhhChhhh
Q psy14915 633 EDIAEFLLFALQYIPGIE--DVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFIS-NPDVQTRTSNLYDRIMAHKFSS 709 (1046)
Q Consensus 633 Edi~d~~~fi~r~~p~~l--~~~~~~li~f~i~~l~s~~~ikNP~LraklvevL~~~-~p~~~~~~~~l~~~~~~~~~a~ 709 (1046)
|||+||++|+.|+.|+.+ ...++++++||++||+||+|||||||||||||+|+++ +|..+++.|.+.++|++|++++
T Consensus 539 Edi~d~~~F~~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~ 618 (968)
T 3m62_A 539 EGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVN 618 (968)
T ss_dssp HHHHHHHHHHTTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHH
T ss_pred HhHHHHHHHHHHcCCCccccccchhHHHHHHHHHhCCccccCCHHHHHHHHHHHHhcccccccCCccHHHHHHhcCHHHH
Confidence 999999999999999866 5679999999999999999999999999999999975 6877777788899999999999
Q ss_pred hhhHHHHHhhheeeeecCCCCcchhhhchhhhHHHHHHHhc-CChhHHHHHHHHhhc-cchHHHHHHHHHhhhHHHHHHH
Q psy14915 710 QFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMW-ESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDES 787 (1046)
Q Consensus 710 ~~L~~aLm~fYidvE~TG~~sqFYdKFn~Ry~I~~Ilk~LW-~~~~~r~~l~~es~~-~~~FvrFvN~LiND~t~lLDE~ 787 (1046)
+||++|||+||||||+||+|+||||||||||+|++||++|| ++|.||++|++++++ +++|+|||||||||+||||||+
T Consensus 619 ~~L~~aLm~fYvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~~~~FvrFvNlLiND~tyLLDEs 698 (968)
T 3m62_A 619 KNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARMLNDLTFLLDEG 698 (968)
T ss_dssp HHHHHHHHHHHHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccCCcchHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999975 6899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCC-CHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhHHhcCCCCchHHHHHHHHH
Q psy14915 788 LESLKRIHETQELMRDEAAYAAI-PAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAM 866 (1046)
Q Consensus 788 L~~L~~I~~~q~~~~d~~~w~~l-~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~lT~~i~~~Fl~peiv~RLA~M 866 (1046)
|++|++||++|++++|.+.|... .+|+|+++++.++++||+||||++||++|++||++||+++|++|++||||+|||+|
T Consensus 699 L~~L~~I~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~M 778 (968)
T 3m62_A 699 LSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASM 778 (968)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHH
Confidence 99999999999999988777653 35678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCCccCccccCCcccCCChHHHHHHHHHHHHhcC-chHHHHHHhhcCccCCHHHHHHHHHHHHHh-ccCCh
Q psy14915 867 LNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHLD-CDEFAAAIAQDERSFRKELFDDAADRMERR-QILLP 944 (1046)
Q Consensus 867 LnynL~~LvGpk~~~LkVknpekY~F~Pk~lL~~i~~IYlnL~-~~~F~~ava~D~Rsy~~elF~~a~~il~~~-~l~~~ 944 (1046)
|||||++||||||++||||||+||+|+||+||.+||+||+||+ +++|++|||+|||||++++|++|++||+++ |++++
T Consensus 779 LnynL~~LvGPk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~~~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~ 858 (968)
T 3m62_A 779 LNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASP 858 (968)
T ss_dssp HHHHHHHHHSHHHHTCCCSCGGGGTCCHHHHHHHHHHHHHHTTTCHHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCH
T ss_pred HHHHHHHhcCccccccccCCHhhcCCCHHHHHHHHHHHHhhccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCH
Confidence 9999999999999999999999999999999999999999995 789999999999999999999999999765 79999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccchhhhhhhcCccccCCC-CeecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 945 SSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 945 ~~i~~~~~l~~~v~~~~~~~~~~e~~~~~~Pdef~cPI~~~lM~DPVilpsg-~t~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
+++++|.+|++++++.+++.+++|++++++|++|+||||.++|+|||++||| +||||++|++||.++++||+||+||+.
T Consensus 859 ~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 859 EFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 9999999999999999999888999999999999999999999999999987 799999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHhccC
Q psy14915 1024 DNLKPNEELKKKIEAWKREKIEK 1046 (1046)
Q Consensus 1024 ~~lipn~~Lk~~I~~w~~~~~~k 1046 (1046)
++|+||.+||++|++|+.+++++
T Consensus 939 ~~liPN~~Lk~~I~~w~~~~~~~ 961 (968)
T 3m62_A 939 EDVTPNEELRQKILCFKKQKKEE 961 (968)
T ss_dssp GGCEECHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998754
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.81 E-value=8.7e-22 Score=184.76 Aligned_cols=93 Identities=63% Similarity=1.025 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhhhhcccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHH
Q psy14915 954 ASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELK 1033 (1046)
Q Consensus 954 ~~~v~~~~~~~~~~e~~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk 1033 (1046)
+++++++.+..+++|.+..++|++|.|||+.++|+|||++||||+|||++|.+|+.++.+||+||++|+.++|+||..||
T Consensus 6 ~~~~~~~~~~~~~~e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk 85 (100)
T 2kre_A 6 AEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELK 85 (100)
T ss_dssp SSCCCCSCSCSSCSSCSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHH
T ss_pred HHHHHHHHHhhcchhhhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHH
Confidence 34444555555566778899999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHhccC
Q psy14915 1034 KKIEAWKREKIEK 1046 (1046)
Q Consensus 1034 ~~I~~w~~~~~~k 1046 (1046)
+.|++|++++++|
T Consensus 86 ~~I~~~~~~~~~~ 98 (100)
T 2kre_A 86 EQIQAWMREKQNS 98 (100)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhc
Confidence 9999999988764
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.80 E-value=1.8e-20 Score=170.58 Aligned_cols=81 Identities=69% Similarity=1.091 Sum_probs=76.9
Q ss_pred hhhcccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Q psy14915 966 KKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKIE 1045 (1046)
Q Consensus 966 ~~e~~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~~ 1045 (1046)
++|.++.++|++|.|||+.++|+|||++||||+|||++|.+|+.+..+||+||++++.++|+||..||+.|++|++++++
T Consensus 3 ~~e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 3 SAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp CCCCCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 56778899999999999999999999999999999999999999899999999999999999999999999999998765
Q ss_pred C
Q psy14915 1046 K 1046 (1046)
Q Consensus 1046 k 1046 (1046)
+
T Consensus 83 ~ 83 (85)
T 2kr4_A 83 S 83 (85)
T ss_dssp T
T ss_pred c
Confidence 3
No 4
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.78 E-value=1.1e-19 Score=169.84 Aligned_cols=81 Identities=56% Similarity=0.907 Sum_probs=75.9
Q ss_pred hhhhcccCCCCccccchhhhhhhcCccccCCC-CeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHh
Q psy14915 965 IKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043 (1046)
Q Consensus 965 ~~~e~~~~~~Pdef~cPI~~~lM~DPVilpsg-~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~ 1043 (1046)
++++.++.++|++|+|||+.++|+|||++|+| |+|||++|.+||.++.+||+||++|+.++|+||..||+.|++|++++
T Consensus 10 ~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 10 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred ccchhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 44566788999999999999999999999999 99999999999998999999999999999999999999999999987
Q ss_pred cc
Q psy14915 1044 IE 1045 (1046)
Q Consensus 1044 ~~ 1045 (1046)
+.
T Consensus 90 ~~ 91 (98)
T 1wgm_A 90 KQ 91 (98)
T ss_dssp TT
T ss_pred ch
Confidence 53
No 5
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.70 E-value=1.5e-17 Score=171.09 Aligned_cols=93 Identities=32% Similarity=0.453 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcC-CCCCCCCCCCC
Q psy14915 944 PSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLF 1022 (1046)
Q Consensus 944 ~~~i~~~~~l~~~v~~~~~~~~~~e~~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~-~~dPftr~pL~ 1022 (1046)
.+.++++..+..++.+. ....++|++|+|||+.++|+|||++||||+|||++|.+|+.++ .+||+||++|+
T Consensus 81 ~~~i~~~~~l~~~~~~~--------~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 81 DKYLMDMDELFSQVDEK--------RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp HHHHHHHHHHHHHHHHG--------GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HHHHHHHHHHHHHHhhh--------ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34556666666554332 2357899999999999999999999999999999999999874 57999999999
Q ss_pred CCCccccHHHHHHHHHHHHHhc
Q psy14915 1023 EDNLKPNEELKKKIEAWKREKI 1044 (1046)
Q Consensus 1023 ~~~lipn~~Lk~~I~~w~~~~~ 1044 (1046)
.++|+||..||+.|++|+.++.
T Consensus 153 ~~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 153 QDQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp GGGCEECHHHHHHHHHHHHHCT
T ss_pred hhhCcchHHHHHHHHHHHHHCC
Confidence 9999999999999999998764
No 6
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.56 E-value=1.9e-15 Score=163.32 Aligned_cols=76 Identities=33% Similarity=0.502 Sum_probs=70.5
Q ss_pred cccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcC-CCCCCCCCCCCCCCccccHHHHHHHHHHHHHhc
Q psy14915 969 VDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELKKKIEAWKREKI 1044 (1046)
Q Consensus 969 ~~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~-~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~ 1044 (1046)
....++|++|.|||+.++|+|||++||||||||++|.+|+..+ .+||+||++++.++|+||..||+.|++|+.++.
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999999999999999999864 469999999999999999999999999998764
No 7
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-15 Score=140.19 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=66.5
Q ss_pred CCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcC------CCCCCCCCC---CCCCCccccHHHHHHHHHHHHH
Q psy14915 973 DAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNS------STDPFSRQP---LFEDNLKPNEELKKKIEAWKRE 1042 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~------~~dPftr~p---L~~~~lipn~~Lk~~I~~w~~~ 1042 (1046)
..+++|.|||+.++|+|||++| +||+|||++|.+|+.+. .+||+|+.+ ++.++|+||..|++.|++|+++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 4688999999999999999997 99999999999999764 499997776 9999999999999999999987
Q ss_pred hcc
Q psy14915 1043 KIE 1045 (1046)
Q Consensus 1043 ~~~ 1045 (1046)
++.
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 653
No 8
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.48 E-value=5.6e-15 Score=126.49 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=51.7
Q ss_pred cccchhhhhhhcCcccc-CCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHH
Q psy14915 977 EFRDPLMDTLMEDPVTL-PSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEE 1031 (1046)
Q Consensus 977 ef~cPI~~~lM~DPVil-psg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~ 1031 (1046)
.|+|||+.++|+|||++ +||++|||++|++||.++++||+||++|+.++|+|+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 79999999999999998899999999999999999853
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.42 E-value=8.6e-14 Score=123.39 Aligned_cols=73 Identities=34% Similarity=0.499 Sum_probs=69.6
Q ss_pred CCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc-CCCCCCCCCCCCCCCccccHHHHHHHHHHHHHhc
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKI 1044 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~-~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~ 1044 (1046)
.++|++|.|||+..+|+|||++|+||+|+|.+|.+|+.. ..+||.+|++++.++++||..|++.|++|+++++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999999999987 6899999999999999999999999999999875
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.01 E-value=4.7e-10 Score=102.31 Aligned_cols=74 Identities=28% Similarity=0.365 Sum_probs=67.9
Q ss_pred ccCCCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcC--CCCCCCCCCC-CCCCccccHHHHHHHHHHHHHh
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNS--STDPFSRQPL-FEDNLKPNEELKKKIEAWKREK 1043 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~--~~dPftr~pL-~~~~lipn~~Lk~~I~~w~~~~ 1043 (1046)
+.++++++|.|||...+|.|||++| +||+|.+.+|.+|+... .+||.+|+++ ..+++.||..|++.|+.|...+
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999 99999999999999753 5999999998 6789999999999999999875
No 11
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.87 E-value=5.2e-10 Score=120.57 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=68.7
Q ss_pred hhhcccCCCCccccchhhhhhhcCcccc-CCCCeecHHHHHHHHhcC--CCCCC--CCCCCCCCCccccHHHHHHHHHHH
Q psy14915 966 KKEVDYNDAPDEFRDPLMDTLMEDPVTL-PSGVVMDRSVIVRHLLNS--STDPF--SRQPLFEDNLKPNEELKKKIEAWK 1040 (1046)
Q Consensus 966 ~~e~~~~~~Pdef~cPI~~~lM~DPVil-psg~t~dR~~I~~hLl~~--~~dPf--tr~pL~~~~lipn~~Lk~~I~~w~ 1040 (1046)
++|...+....+|.|||+..+|+|||+. .|||+|||++|.+|+... .+||. ||++++..+|+||..|+..|+.|.
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred CccceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 3444566788999999999999999986 799999999999999764 48999 889999999999999999999998
Q ss_pred HH
Q psy14915 1041 RE 1042 (1046)
Q Consensus 1041 ~~ 1042 (1046)
..
T Consensus 250 ~r 251 (267)
T 3htk_C 250 MK 251 (267)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 12
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.72 E-value=2.5e-09 Score=103.09 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=63.8
Q ss_pred CCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCC-CCCCCCCCCCC-CCccccHHHHHHHHHHHHH
Q psy14915 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS-TDPFSRQPLFE-DNLKPNEELKKKIEAWKRE 1042 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~-~dPftr~pL~~-~~lipn~~Lk~~I~~w~~~ 1042 (1046)
++++++.|||+..+|.|||++|+||+|++.+|.+|+.... +||.+|++++. .++.+|..|++.|+.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 3456789999999999999999999999999999998654 99999999998 8899999999999998754
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.68 E-value=6.5e-09 Score=96.20 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=67.4
Q ss_pred CCCCccccchhhhhhhcCcccc-CCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHhc
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTL-PSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKI 1044 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVil-psg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~ 1044 (1046)
.++++++.|||....+.|||++ |+||+|.+.+|.+|+....+||.+|++++..++.+|..|++.|+.|.+.+.
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 3456788999999999999998 799999999999999988999999999999999999999999999987754
No 14
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=102.35 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=64.9
Q ss_pred CCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCC-CCCCCCCCCCCC-CccccHHHHHHHHHHHHH
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS-TDPFSRQPLFED-NLKPNEELKKKIEAWKRE 1042 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~-~dPftr~pL~~~-~lipn~~Lk~~I~~w~~~ 1042 (1046)
.++++++.|||+..+|.|||++|+||+|++.+|.+|+.... +||.+|++++.. .+.+|..|++.|+.|...
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred HhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 34667899999999999999999999999999999998764 899999999988 899999999999998754
No 15
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.45 E-value=7.8e-08 Score=90.39 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCCCccccchhhhhhhcCcccc-CCCCeecHHHHHHHHhcCCCCCCCCCCCCCC----CccccHHHHHHHHHHHH
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTL-PSGVVMDRSVIVRHLLNSSTDPFSRQPLFED----NLKPNEELKKKIEAWKR 1041 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVil-psg~t~dR~~I~~hLl~~~~dPftr~pL~~~----~lipn~~Lk~~I~~w~~ 1041 (1046)
.++++++.|||...++.|||++ |+||+|.+.+|.+|+....+||.+|+++... .+.+|..|++.|+.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 3457789999999999999998 8999999999999999899999999999876 78999999999998864
No 16
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.44 E-value=7.4e-08 Score=92.15 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=64.7
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCC-CCCCCCCCCCCCCccccHHHHHHHHHH
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS-TDPFSRQPLFEDNLKPNEELKKKIEAW 1039 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~-~dPftr~pL~~~~lipn~~Lk~~I~~w 1039 (1046)
....++++|.|||...++.|||++|+||+|.+.+|.+|+.... +||.+|.+++.+++.|+..+++.|.++
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 3467889999999999999999999999999999999998765 999999999999999999999998864
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.2e-07 Score=82.72 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHH
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEA 1038 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~ 1038 (1046)
.+..+++.|||....+.|||++|+||+|.+.+|.+|+....+||.+|+++. ..+.+|.+|.+++.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l~~~~~~ 75 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKELMAKLQK 75 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHHHHHHSS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHHHHHHHh
Confidence 456778999999999999999999999999999999998999999999998 788999888776654
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.39 E-value=4.4e-08 Score=87.05 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=59.6
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc------CCCCCCCCCCCCCCCccccHHHHHH
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN------SSTDPFSRQPLFEDNLKPNEELKKK 1035 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~------~~~dPftr~pL~~~~lipn~~Lk~~ 1035 (1046)
...++.+++.|||....+.+||++|+||+|.+.+|.+|+.. ..+||.+|++++.+++.||..|++.
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 45668889999999999999999999999999999999987 6799999999999999999876543
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.36 E-value=2e-08 Score=88.53 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=58.9
Q ss_pred cCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc-------CCCCCCCCCCCCCCCccccHHHHHH
Q psy14915 971 YNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-------SSTDPFSRQPLFEDNLKPNEELKKK 1035 (1046)
Q Consensus 971 ~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~-------~~~dPftr~pL~~~~lipn~~Lk~~ 1035 (1046)
..++.+++.|||..+.+.|||++|+||+|.+.+|.+|+.. ..+||.+|++++.+++.+|..|++.
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 4567889999999999999999999999999999999976 5699999999999999999877543
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=5.4e-08 Score=86.49 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=59.7
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc------CCCCCCCCCCCCCCCccccHHHHHH
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN------SSTDPFSRQPLFEDNLKPNEELKKK 1035 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~------~~~dPftr~pL~~~~lipn~~Lk~~ 1035 (1046)
...++.+++.|||....++|||++|+||+|.+.+|.+|+.+ ..+||.+|++++.+++.||..|++.
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 34678889999999999999999999999999999999987 6899999999999999999876543
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.33 E-value=1.7e-07 Score=88.05 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=60.7
Q ss_pred ccccchhhhhhhcCccccCCCCeecHHHHHHHHhcC---CCCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q psy14915 976 DEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS---STDPFSRQPLFEDNLKPNEELKKKIEAWKRE 1042 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~---~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~ 1042 (1046)
+++.|||....+.|||++|+||+|.+.+|.+|+... .+||.+|++++.+++.+|..+++.|+++.+.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999865 3999999999999999999888888887754
No 22
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.32 E-value=1.7e-07 Score=94.58 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=62.4
Q ss_pred CCCCccccchhhhhhhcCcccc-CCCCeecHHHHHHHHhc-CCCCCCCCCCCC-CCCccccHHHHHHHHHHHHH
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTL-PSGVVMDRSVIVRHLLN-SSTDPFSRQPLF-EDNLKPNEELKKKIEAWKRE 1042 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVil-psg~t~dR~~I~~hLl~-~~~dPftr~pL~-~~~lipn~~Lk~~I~~w~~~ 1042 (1046)
.++.+++.|||+...+.|||++ |+||+|++.+|.+|+.. ..+||.+|.+++ .+.+.||..|++.|+.|...
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 3466788999999999999998 79999999999999987 789999999995 57799999999999998653
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=6.1e-07 Score=78.16 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=56.5
Q ss_pred cccCCCCccccchhhhhhhcCcccc-CCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccH
Q psy14915 969 VDYNDAPDEFRDPLMDTLMEDPVTL-PSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNE 1030 (1046)
Q Consensus 969 ~~~~~~Pdef~cPI~~~lM~DPVil-psg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~ 1030 (1046)
.+..++.+++.|||..+.+.|||++ ++||+|.+.+|.+|+....+||..|++++.++++++.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 3456788899999999999999997 8999999999999998889999999999999988763
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.30 E-value=3.7e-07 Score=80.14 Aligned_cols=62 Identities=27% Similarity=0.290 Sum_probs=54.3
Q ss_pred cccCCCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcC--CCCCCCCCCC-CCCCccccH
Q psy14915 969 VDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNS--STDPFSRQPL-FEDNLKPNE 1030 (1046)
Q Consensus 969 ~~~~~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~--~~dPftr~pL-~~~~lipn~ 1030 (1046)
.+..++++++.|||....|.|||++| +||+|.+.+|.+|+... .+||.+|++. ..+.+++|.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 72 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPS 72 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCTT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccCC
Confidence 34677899999999999999999999 99999999999999865 6999999984 567777763
No 25
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.28 E-value=2.1e-07 Score=88.84 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=62.2
Q ss_pred CccccchhhhhhhcCcccc-CCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHh
Q psy14915 975 PDEFRDPLMDTLMEDPVTL-PSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPVil-psg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~ 1043 (1046)
.+++.|||...++.|||++ |+||+|.+.+|.+|+. .+||.+|+++...++.+|..|++.|+.|.+.+
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 4578999999999999999 8999999999999986 89999999999999999999999999987653
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.23 E-value=8.5e-07 Score=87.10 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=52.5
Q ss_pred CccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHH
Q psy14915 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWK 1040 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~ 1040 (1046)
.+++.|||+...|.|||++|+||+|++.+|.+|+....+||++|+++... .++..+...|+.++
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 35678999999999999999999999999999999999999999998753 23444444554443
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=9.4e-07 Score=75.59 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=51.6
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHh-cCCCCCCCCCCCCCCCc
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLL-NSSTDPFSRQPLFEDNL 1026 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl-~~~~dPftr~pL~~~~l 1026 (1046)
....+++++.|||....++|||++++||+|.+.+|.+|+. ...+||.+|++++.+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4556788999999999999999999999999999999995 56799999999998775
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.21 E-value=5.3e-07 Score=83.88 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=59.9
Q ss_pred CCccccchhhhhhhcCccc-cCCCCeecHHHHHHHHhcC-CCCCCCCCCCCCCCccccHHHHHHHHHHH
Q psy14915 974 APDEFRDPLMDTLMEDPVT-LPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELKKKIEAWK 1040 (1046)
Q Consensus 974 ~Pdef~cPI~~~lM~DPVi-lpsg~t~dR~~I~~hLl~~-~~dPftr~pL~~~~lipn~~Lk~~I~~w~ 1040 (1046)
+.+++.|||....+.|||. +++||+|.+.+|.+|+... .+||.+|.+++.+++++|..+.+.++...
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~ 87 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLD 87 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHH
Confidence 3457889999999999999 8899999999999999887 69999999999999999988877766544
No 29
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.20 E-value=6.2e-07 Score=90.83 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=64.2
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcC-CCCCCCCCCCCCCCccccHHHHHHHHHH
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPNEELKKKIEAW 1039 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~-~~dPftr~pL~~~~lipn~~Lk~~I~~w 1039 (1046)
..+.++++|.|||...+|.|||.+++||+|.+++|.+|+.+. .+||..|.+++.+++.|+..+++.|.++
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 356789999999999999999999999999999999999764 4999999999999999999999988753
No 30
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.17 E-value=2.1e-07 Score=88.32 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=63.3
Q ss_pred CCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc-CCCCCCCCCCCCC-------CCccccHHHHHHHHHHHHH
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFE-------DNLKPNEELKKKIEAWKRE 1042 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~-~~~dPftr~pL~~-------~~lipn~~Lk~~I~~w~~~ 1042 (1046)
....++|.|||...++.+||++|+||+|.+.+|.+|+.. ..+||.+|++++. ..+.+|..|.+.|++|..+
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 345568999999999999999999999999999999976 5799999999974 7888999999999999743
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.1e-06 Score=74.42 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=51.5
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHh---cCCCCCCCCCCCCCCCc
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLL---NSSTDPFSRQPLFEDNL 1026 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl---~~~~dPftr~pL~~~~l 1026 (1046)
...++.+++.|||..+.+.|||++|+||+|.+.+|.+|+. ...+||.+|++++.+++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4567889999999999999999999999999999999996 35699999999998775
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.04 E-value=1.3e-06 Score=82.99 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=57.3
Q ss_pred CCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc-CCCCCCCCCCCCCCCcc-ccHHHHHHHHH
Q psy14915 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNLK-PNEELKKKIEA 1038 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~-~~~dPftr~pL~~~~li-pn~~Lk~~I~~ 1038 (1046)
++++++.|||....+.|||++|+||+|.+.+|.+|+.. ..+||.+|++++.+++. ++..+.+.|.+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 34567899999999999999999999999999999987 67999999999988875 56677766654
No 33
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.94 E-value=1.2e-06 Score=86.67 Aligned_cols=67 Identities=7% Similarity=0.109 Sum_probs=58.7
Q ss_pred CCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCC-CCCCCCCCCC---------CCCccccHHHHHHHHH
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS-TDPFSRQPLF---------EDNLKPNEELKKKIEA 1038 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~-~dPftr~pL~---------~~~lipn~~Lk~~I~~ 1038 (1046)
..++++|.|||...++.|||.+++||+|.+.+|.+|+.... +||.+|+++. .+++.|+..++..|.+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 46789999999999999999999999999999999998664 9999999764 3467799999988864
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.87 E-value=6.8e-06 Score=70.74 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=51.9
Q ss_pred CCccccchhhhhhhcCc-------cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q psy14915 974 APDEFRDPLMDTLMEDP-------VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPN 1029 (1046)
Q Consensus 974 ~Pdef~cPI~~~lM~DP-------Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn 1029 (1046)
..+++.|||..+.+.+| |++++||+|.+.+|.+|+.+..+||.+|++++.+++.|+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 45678999999999999 889999999999999999999999999999999998875
No 35
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1.4e-05 Score=71.53 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred cccCCCCccccchhhhhhhcC----ccccCCCCeecHHHHHHHHhcC---CCCCCCCCCCCCCC---ccccH
Q psy14915 969 VDYNDAPDEFRDPLMDTLMED----PVTLPSGVVMDRSVIVRHLLNS---STDPFSRQPLFEDN---LKPNE 1030 (1046)
Q Consensus 969 ~~~~~~Pdef~cPI~~~lM~D----PVilpsg~t~dR~~I~~hLl~~---~~dPftr~pL~~~~---lipn~ 1030 (1046)
.+..++.+++.|||..+.+.+ ||++|+||+|.+.+|.+|+... .+||++|+++...+ |.+|.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~ 78 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNL 78 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECT
T ss_pred cChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHH
Confidence 345678889999999999999 9999999999999999999875 79999999987654 44444
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.79 E-value=1.8e-05 Score=67.30 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=48.9
Q ss_pred ccccchhhhh-hhcCc----cccCCCCeecHHHHHHHHhcC-CCCCCCCCCCCCCCcccc
Q psy14915 976 DEFRDPLMDT-LMEDP----VTLPSGVVMDRSVIVRHLLNS-STDPFSRQPLFEDNLKPN 1029 (1046)
Q Consensus 976 def~cPI~~~-lM~DP----Vilpsg~t~dR~~I~~hLl~~-~~dPftr~pL~~~~lipn 1029 (1046)
+++.|||..+ .+.+| |++++||+|.+..|.+|+.++ .+||..|++++.+++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6789999999 99999 468999999999999998764 689999999999998875
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.79 E-value=8.4e-06 Score=68.53 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=50.2
Q ss_pred ccccchhhhhhhcCc-------cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q psy14915 976 DEFRDPLMDTLMEDP-------VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPN 1029 (1046)
Q Consensus 976 def~cPI~~~lM~DP-------Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn 1029 (1046)
+++.|||..+.+.+| +++++||+|.+..|.+|+.+..+||..|++++.+++.|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 467899999999998 789999999999999999999999999999999998775
No 38
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=4.7e-06 Score=72.31 Aligned_cols=54 Identities=19% Similarity=0.073 Sum_probs=49.3
Q ss_pred CCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCc
Q psy14915 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNL 1026 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~l 1026 (1046)
...+++.|||..+.+.|||++|+||+|.+.+|.+|+....+||++|++++.+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 445678999999999999999999999999999999999999999999986654
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=4e-05 Score=64.71 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=42.3
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhc---CCCCCCC
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLN---SSTDPFS 1017 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~---~~~dPft 1017 (1046)
...++.+++.|||..+.+.|||++|+||+|.+..|.+|+.. ..+||..
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45678899999999999999999999999999999999983 4578863
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=4.1e-05 Score=65.22 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=48.3
Q ss_pred cCCCCccccchhhhhhhcCc-------cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 971 YNDAPDEFRDPLMDTLMEDP-------VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 971 ~~~~Pdef~cPI~~~lM~DP-------Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
....++++.|||..+.+.+| |++++||+|.+.+|.+|+....+||+.|++++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567889999999999999 889999999999999999999999999999864
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.55 E-value=4.7e-05 Score=66.91 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=51.9
Q ss_pred CCCCccccchhhhhhhcCcc---ccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccH
Q psy14915 972 NDAPDEFRDPLMDTLMEDPV---TLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNE 1030 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPV---ilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~ 1030 (1046)
.+..+++.|||..+.+.+|+ ++|+||+|.+.+|.+|+....+||++|++++..++.+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 34566789999999998874 569999999999999999889999999999999888764
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.35 E-value=7.7e-05 Score=71.30 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=51.0
Q ss_pred CccccchhhhhhhcCc-------cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q psy14915 975 PDEFRDPLMDTLMEDP-------VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPN 1029 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DP-------Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn 1029 (1046)
++++.|||..+.++|| |++++||+|.+..|.+||.+..+||..|++++..++.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence 6789999999999999 999999999999999999999999999999998887653
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00016 Score=59.56 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=40.7
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHh---cCCCCCC
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLL---NSSTDPF 1016 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl---~~~~dPf 1016 (1046)
...++.+++.|||..+.++|||++|+||+|.+..|.+|+. ...+||.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 3456788999999999999999999999999999999964 3467875
No 44
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.11 E-value=0.00034 Score=59.88 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=45.6
Q ss_pred CCCCccccchhhhhhhc---CccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy14915 972 NDAPDEFRDPLMDTLME---DPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFED 1024 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~---DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~ 1024 (1046)
.+..++..|||....+. +|+++|+||+|.+.+|.+|+....+||+.|++++..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 44566778999988774 567899999999999999999999999999998754
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.06 E-value=0.00026 Score=60.41 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=43.5
Q ss_pred ccccchhhhhhhcCc-cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 976 DEFRDPLMDTLMEDP-VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 976 def~cPI~~~lM~DP-Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
++..|||..+.+.|| +++|+||+|.+.+|.+|+....+||..|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 355799999999998 688899999999999999989999999999873
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=9.3e-05 Score=63.63 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=50.4
Q ss_pred ccCCCCccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCc
Q psy14915 970 DYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNL 1026 (1046)
Q Consensus 970 ~~~~~Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~l 1026 (1046)
...+..+++.|||..+.+.+ |++|+||+|.+.+|.+|+....+||..|++++..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 8 RVKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred hhhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 34567788999999999999 999999999999999999989999999999986653
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.95 E-value=0.00037 Score=56.79 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=42.5
Q ss_pred ccccchhhhhhhcC----ccccCCCCeecHHHHHHHHhcCCCCCCCCCCCC
Q psy14915 976 DEFRDPLMDTLMED----PVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLF 1022 (1046)
Q Consensus 976 def~cPI~~~lM~D----PVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~ 1022 (1046)
+++.|||..+.+.+ |+++|+||+|.+..|.+|+....+||+.|++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45679999999877 888999999999999999999999999999875
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.93 E-value=0.00027 Score=80.66 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=46.8
Q ss_pred ccccchhhhhhhcCccccCCCCeecHHHHHHHHh-cCCCCCCCCCCCCCCCcc
Q psy14915 976 DEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLL-NSSTDPFSRQPLFEDNLK 1027 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl-~~~~dPftr~pL~~~~li 1027 (1046)
+...|||+.+.+.|||++||||++++.||.+|+. ...+||++|++++...++
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 3568999999999999999999999999999998 578999999999876544
No 49
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.84 E-value=0.00085 Score=58.18 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=47.8
Q ss_pred cCCCCccccchhhhhhhcCcccc---CCCCeecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy14915 971 YNDAPDEFRDPLMDTLMEDPVTL---PSGVVMDRSVIVRHLLNSSTDPFSRQPLFED 1024 (1046)
Q Consensus 971 ~~~~Pdef~cPI~~~lM~DPVil---psg~t~dR~~I~~hLl~~~~dPftr~pL~~~ 1024 (1046)
..+..++..|||..+.+.+|+.+ |+||+|.+.+|.+|+....+||++|+++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 45667788999999999988765 9999999999999999999999999998643
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.81 E-value=0.00068 Score=61.70 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=45.8
Q ss_pred CCCccccchhhhhhhcC---ccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 973 DAPDEFRDPLMDTLMED---PVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 973 ~~Pdef~cPI~~~lM~D---PVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
...++..|||..+-+.+ ++++|+||+|.+.+|.+||....+||.+|.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45567889999988888 8899999999999999999999999999998864
No 51
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.81 E-value=0.00058 Score=55.70 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=43.6
Q ss_pred CccccchhhhhhhcC---ccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCC
Q psy14915 975 PDEFRDPLMDTLMED---PVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLF 1022 (1046)
Q Consensus 975 Pdef~cPI~~~lM~D---PVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~ 1022 (1046)
.++..|||..+-+.+ |+++| +||+|.+..|.+|+.+..+||..|+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 356679999999988 89998 9999999999999999999999999875
No 52
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.67 E-value=0.00092 Score=58.27 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=45.2
Q ss_pred CccccchhhhhhhcCc---cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy14915 975 PDEFRDPLMDTLMEDP---VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFED 1024 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DP---Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~ 1024 (1046)
.++..|||..+-+.+| +++|+||+|.+.+|.+|+....+||.+|++++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4567899999999998 7899999999999999999999999999998753
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.52 E-value=0.00059 Score=56.60 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=42.3
Q ss_pred CccccchhhhhhhcCccccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy14915 975 PDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDN 1025 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPVilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~ 1025 (1046)
-+++.|||....+.|||++|+||+|.+..|.+ ....||..|++++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecCC
Confidence 35788999999999999999999999999988 3679999999987643
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.46 E-value=0.00083 Score=64.06 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=51.1
Q ss_pred CccccchhhhhhhcCc-------cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q psy14915 975 PDEFRDPLMDTLMEDP-------VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPN 1029 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DP-------Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn 1029 (1046)
++.+.|||..+.+.+| |.+++||+|....|.+||....+||..|++++.++++|.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 5678899999999998 889999999999999999999999999999999998875
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.29 E-value=0.00027 Score=62.05 Aligned_cols=44 Identities=11% Similarity=-0.023 Sum_probs=40.5
Q ss_pred ccccchhhhhhhcCccccCCCCe-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 976 DEFRDPLMDTLMEDPVTLPSGVV-MDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilpsg~t-~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
+++.|||..+.+.|||++|+||+ +.+.++.+| .+||+.|++++.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999999999999999999 999999998 899999998864
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.24 E-value=0.0035 Score=55.88 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=46.8
Q ss_pred CCCCccccchhhhhhh--cCccccC--CCCeecHHHHHHHHhc-CCCCCCCCCCCCCCCc
Q psy14915 972 NDAPDEFRDPLMDTLM--EDPVTLP--SGVVMDRSVIVRHLLN-SSTDPFSRQPLFEDNL 1026 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM--~DPVilp--sg~t~dR~~I~~hLl~-~~~dPftr~pL~~~~l 1026 (1046)
.+..+++.|||..+.+ .||+++| +||++.+.+|.++..+ ...||.+|++.+...+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3456789999999988 6788887 9999999999999854 5799999999987655
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.16 E-value=0.0038 Score=58.64 Aligned_cols=49 Identities=8% Similarity=-0.105 Sum_probs=42.1
Q ss_pred CccccchhhhhhhcCcc------------------ccCCCCeecHHHHHHHHh-----cCCCCCCCCCCCCC
Q psy14915 975 PDEFRDPLMDTLMEDPV------------------TLPSGVVMDRSVIVRHLL-----NSSTDPFSRQPLFE 1023 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPV------------------ilpsg~t~dR~~I~~hLl-----~~~~dPftr~pL~~ 1023 (1046)
+.+..|||..+-+.+|+ ++|+||+|.+.+|.+||. ...+||.+|++...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34558999999999987 788999999999999994 35799999998764
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.67 E-value=0.003 Score=55.37 Aligned_cols=44 Identities=11% Similarity=-0.032 Sum_probs=39.1
Q ss_pred cccchhhhhhhcCccccCCCCe-ecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy14915 977 EFRDPLMDTLMEDPVTLPSGVV-MDRSVIVRHLLNSSTDPFSRQPLFED 1024 (1046)
Q Consensus 977 ef~cPI~~~lM~DPVilpsg~t-~dR~~I~~hLl~~~~dPftr~pL~~~ 1024 (1046)
++.|||..+.+.|||++|+||+ +.+.++.+ ...||+.|++++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4579999999999999999999 99999965 38999999998753
No 59
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.19 E-value=0.014 Score=65.78 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=41.3
Q ss_pred CccccchhhhhhhcCccccCCCCe-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 975 PDEFRDPLMDTLMEDPVTLPSGVV-MDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPVilpsg~t-~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
.+++.|||+.+.+.|||++||||+ +++.++.+| ..||.+|.+++.
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356889999999999999999999 999999988 899999999864
No 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.18 E-value=0.0069 Score=53.89 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=41.5
Q ss_pred cccchhhhhhhcC--------------ccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy14915 977 EFRDPLMDTLMED--------------PVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDN 1025 (1046)
Q Consensus 977 ef~cPI~~~lM~D--------------PVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~~~~ 1025 (1046)
+-.|+|...-+.+ ++++| +||+|-+.+|.+||....+||..|+++...+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 3458888888877 56676 9999999999999999999999999987543
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.07 E-value=0.01 Score=50.52 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=43.0
Q ss_pred ccccchhhhhhhcCcccc--CCCCe-ecHHHHHHHHhcCCCCCCCCCCCC
Q psy14915 976 DEFRDPLMDTLMEDPVTL--PSGVV-MDRSVIVRHLLNSSTDPFSRQPLF 1022 (1046)
Q Consensus 976 def~cPI~~~lM~DPVil--psg~t-~dR~~I~~hLl~~~~dPftr~pL~ 1022 (1046)
++..|+|..+-..|+|++ |+||. +.+..+.+|...+..||+.|++++
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 455799999999999988 99999 899999999988899999999985
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.53 E-value=0.015 Score=49.38 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=42.3
Q ss_pred cccchhhhhhhcCcccc--CCCCe-ecHHHHHHHHhcCCCCCCCCCCCC
Q psy14915 977 EFRDPLMDTLMEDPVTL--PSGVV-MDRSVIVRHLLNSSTDPFSRQPLF 1022 (1046)
Q Consensus 977 ef~cPI~~~lM~DPVil--psg~t-~dR~~I~~hLl~~~~dPftr~pL~ 1022 (1046)
+..|+|..+-.+|+|++ |+||. +.+..+.+|...+.+||+.|++++
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45799999999999998 99998 999999999988899999999985
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.40 E-value=0.0032 Score=56.12 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=39.3
Q ss_pred ccccchhhhhhhcCccccCCCCe-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 976 DEFRDPLMDTLMEDPVTLPSGVV-MDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 976 def~cPI~~~lM~DPVilpsg~t-~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
++..|+|..+-..|||++|+||. +.+.++.+| ..||+.|++++.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 34579999999999999999999 999999877 499999999874
No 64
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=93.11 E-value=0.053 Score=50.22 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=46.7
Q ss_pred CccccchhhhhhhcCccccC-CCC-----eecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q psy14915 975 PDEFRDPLMDTLMEDPVTLP-SGV-----VMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP 1028 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPVilp-sg~-----t~dR~~I~~hLl~~~~dPftr~pL~~~~lip 1028 (1046)
++...||||..+-+.=|.+. |+. -||..++.+....+...|.+|+|++.+|++-
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 84 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVK 84 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEEC
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEec
Confidence 34456999999999999877 543 3999999999999999999999999999874
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=93.02 E-value=0.054 Score=50.97 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=39.0
Q ss_pred cchhhhhhhcCc------------------cccCCCCeecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 979 RDPLMDTLMEDP------------------VTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 979 ~cPI~~~lM~DP------------------Vilpsg~t~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
.|+|...-+.+| +++|+||.|-+.+|.+||....+||.+|++...
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 589988888877 346799999999999999999999999998653
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.67 E-value=0.026 Score=51.34 Aligned_cols=66 Identities=8% Similarity=-0.031 Sum_probs=48.1
Q ss_pred CccccchhhhhhhcCcccc---CCCCeecHHHHHHHHhc----C----CCCCC--CCCC--CCCCCccccHHHHHHHHHH
Q psy14915 975 PDEFRDPLMDTLMEDPVTL---PSGVVMDRSVIVRHLLN----S----STDPF--SRQP--LFEDNLKPNEELKKKIEAW 1039 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPVil---psg~t~dR~~I~~hLl~----~----~~dPf--tr~p--L~~~~lipn~~Lk~~I~~w 1039 (1046)
.+.|.|||..+.+.+|+++ ++||+|.+.++.+|+.. + -.||. ++.+ ++.+++. +.-..+.++.|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHH
Confidence 3578899999999999975 69999999999999963 1 27999 9988 7665543 21123344445
Q ss_pred HH
Q psy14915 1040 KR 1041 (1046)
Q Consensus 1040 ~~ 1041 (1046)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.81 E-value=0.08 Score=45.65 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=40.3
Q ss_pred CCccccchhhhhhhcCccccCCCCe-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 974 APDEFRDPLMDTLMEDPVTLPSGVV-MDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 974 ~Pdef~cPI~~~lM~DPVilpsg~t-~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
-.++..|+|..+-..|||++|+||. +.+..+.+ ...||+.|+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3456789999999999999999999 99999884 4899999999864
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=91.09 E-value=0.049 Score=52.30 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred cchhhhhhhcCc-----------------cc-cCCCCeecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 979 RDPLMDTLMEDP-----------------VT-LPSGVVMDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 979 ~cPI~~~lM~DP-----------------Vi-lpsg~t~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
.|+|...-+.+| |+ +|+||.|.+.+|.+||....+||.+|++...
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 699999888774 33 4699999999999999999999999998653
No 69
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.17 E-value=0.14 Score=45.64 Aligned_cols=50 Identities=8% Similarity=0.105 Sum_probs=40.8
Q ss_pred ccccchhhhhhh--cCccccCCC-----CeecHHHHHHHHhcC--CCCCCCCCCCCCCC
Q psy14915 976 DEFRDPLMDTLM--EDPVTLPSG-----VVMDRSVIVRHLLNS--STDPFSRQPLFEDN 1025 (1046)
Q Consensus 976 def~cPI~~~lM--~DPVilpsg-----~t~dR~~I~~hLl~~--~~dPftr~pL~~~~ 1025 (1046)
++-.|+|...-. .+|+++|++ |.|-+.+|.+||... .+||+.|.++..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 345699987544 579999975 999999999999864 59999999998654
No 70
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.99 E-value=0.31 Score=55.02 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=55.4
Q ss_pred CCCCccccchhhhhhhcCccccC-CCCe--ecHHHHHHHHhcC--CCCCCCCCCCCCCCccccHHHHHHHH
Q psy14915 972 NDAPDEFRDPLMDTLMEDPVTLP-SGVV--MDRSVIVRHLLNS--STDPFSRQPLFEDNLKPNEELKKKIE 1037 (1046)
Q Consensus 972 ~~~Pdef~cPI~~~lM~DPVilp-sg~t--~dR~~I~~hLl~~--~~dPftr~pL~~~~lipn~~Lk~~I~ 1037 (1046)
+.+.=.+.|||++..|+.||--- |.|. ||-.++....... =.||.|++++..++|+-+.-+.+.+.
T Consensus 210 ~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 210 TSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 33444678999999999999866 8887 9999999987654 49999999999999999988877664
No 71
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.17 E-value=0.32 Score=55.08 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=54.1
Q ss_pred CccccchhhhhhhcCccccC-CCCe--ecHHHHHHHHhcC--CCCCCCCCCCCCCCccccHHHHHHHH
Q psy14915 975 PDEFRDPLMDTLMEDPVTLP-SGVV--MDRSVIVRHLLNS--STDPFSRQPLFEDNLKPNEELKKKIE 1037 (1046)
Q Consensus 975 Pdef~cPI~~~lM~DPVilp-sg~t--~dR~~I~~hLl~~--~~dPftr~pL~~~~lipn~~Lk~~I~ 1037 (1046)
-=.+.|||++..|+.||--- |.|. ||..++.+.-... -.||.|++++..++|+.+.-+...+.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 33578999999999999866 9986 9999998887554 49999999999999999998877664
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.29 E-value=5 Score=35.31 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=36.6
Q ss_pred cchhhhhhhcCccccC-CCCeecHHHHHHHHhcC--CCCCCCCCCCCC
Q psy14915 979 RDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNS--STDPFSRQPLFE 1023 (1046)
Q Consensus 979 ~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~--~~dPftr~pL~~ 1023 (1046)
.|+|.+.+...=+.-+ +|+.|-..+|.+||.+. .+||..|++...
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3888887766444454 89999999999999876 899999999864
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=65.00 E-value=0.99 Score=50.74 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=37.3
Q ss_pred cchhhhhhhcC----ccc----cCCCCeecHHHHHHHHhcC-----------CCCCCCCCCCCC
Q psy14915 979 RDPLMDTLMED----PVT----LPSGVVMDRSVIVRHLLNS-----------STDPFSRQPLFE 1023 (1046)
Q Consensus 979 ~cPI~~~lM~D----PVi----lpsg~t~dR~~I~~hLl~~-----------~~dPftr~pL~~ 1023 (1046)
-|+|++..+.+ |-. .+|||.|-..+|.+||.+. ++||++|+|++.
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 39999998887 543 2499999999999999763 579999999873
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=35.03 E-value=36 Score=28.35 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=35.7
Q ss_pred cchhhhhhhcCccccCCC--C---eecHHHHHHHHhc--CCCCCCCCCCCCC
Q psy14915 979 RDPLMDTLMEDPVTLPSG--V---VMDRSVIVRHLLN--SSTDPFSRQPLFE 1023 (1046)
Q Consensus 979 ~cPI~~~lM~DPVilpsg--~---t~dR~~I~~hLl~--~~~dPftr~pL~~ 1023 (1046)
.|.|...-..+|.++|+. . .+-++.+.+|+.. +.+||+.+.+...
T Consensus 8 ~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 8 VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp EETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred EeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 577877666788999933 3 7999999999975 5799999987653
No 75
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=30.75 E-value=28 Score=26.82 Aligned_cols=20 Identities=50% Similarity=0.529 Sum_probs=12.7
Q ss_pred CCCCCHHHHHH----HHHHhhhcc
Q psy14915 1 MSELTPDEIRQ----RRLAKLGAI 20 (1046)
Q Consensus 1 ~~~l~~~~~r~----rrlarl~~~ 20 (1046)
|||||.+|=|| ||-|+.+.+
T Consensus 1 msels~~ekaRlrRERR~aKi~~G 24 (38)
T 3zs9_C 1 MSELTEAEKRRLLRERRQKKFSNG 24 (38)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTT
T ss_pred CcccCHHHHHHHHHHHHHHHHHcc
Confidence 89999998655 677777666
No 76
>2fd4_A Avirulence protein AVRPTOB; ring finger, U-BOX, ubiquitin ligase,; 1.80A {Pseudomonas syringae}
Probab=28.03 E-value=34 Score=31.79 Aligned_cols=59 Identities=24% Similarity=0.451 Sum_probs=38.6
Q ss_pred hhcccCCCCccccchhhhhhhcCccccC-CCC-------------------------eecHHHHHHHHhcCCCCCCCCCC
Q psy14915 967 KEVDYNDAPDEFRDPLMDTLMEDPVTLP-SGV-------------------------VMDRSVIVRHLLNSSTDPFSRQP 1020 (1046)
Q Consensus 967 ~e~~~~~~Pdef~cPI~~~lM~DPVilp-sg~-------------------------t~dR~~I~~hLl~~~~dPftr~p 1020 (1046)
+|..+.|+-|+..|--+..|+-.|.-|. .++ -+|-.-+.+||.+++..|.||+|
T Consensus 28 ~~~gFkDaAdh~~ddaT~CLFGe~LSL~np~qQVIGLA~~~td~~~~Ysqe~nK~l~FMDMkKLAq~La~kP~HPm~r~~ 107 (122)
T 2fd4_A 28 EELGFKDAADHHTDDVTHCLFGGELSLSNPDQQVIGLAGNPTDTSQPYSQEGNKDLAFMDMKKLAQFLAGKPEHPMTRET 107 (122)
T ss_dssp --CCCCCCCC----CCCBCTTSSBCCTTCTTCCEEEEESSCCCTTSCCC-----CEEEEEHHHHHHHHHHSCBCTTTCCB
T ss_pred cccCcchhhhcCCCCcceecccCccccCCCCceeEEeecCCCCCccccchhcCcceeeeeHHHHHHHhcCCCCCCcccCc
Confidence 3445667777666666666666555443 221 27888899999999999999999
Q ss_pred CCCCC
Q psy14915 1021 LFEDN 1025 (1046)
Q Consensus 1021 L~~~~ 1025 (1046)
|+.+.
T Consensus 108 L~aen 112 (122)
T 2fd4_A 108 LNAEN 112 (122)
T ss_dssp CSTTT
T ss_pred cchhh
Confidence 98765
Done!