RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14915
(1046 letters)
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus, phosphoprotein;
HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A*
2qiz_A 2qj0_A
Length = 968
Score = 711 bits (1836), Expect = 0.0
Identities = 246/974 (25%), Positives = 433/974 (44%), Gaps = 63/974 (6%)
Query: 114 TICKILSVTYSQVDASNTILYLPQVASVLTELKQNSVTITYQDLISQSLVELQDILLSKN 173
I IL +T D L +E T+ D I L+ + ++
Sbjct: 10 AIEDILQITTDPSDTRGYSLLK-------SEEVPQGSTLG-VDFIDTLLLYQ--LTENEK 59
Query: 174 NTCVLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQS---TNSDP 230
+ + R +++R K + E+ ++ + ++ LQ +
Sbjct: 60 LDKPFEYLNDCFRRNQQQKRITKNKPNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA 119
Query: 231 MSSPLVKPLINQTLPNGFLSDFVCTLYEDE---ETFKQVMSPILQGVYKAMTEASI-ADP 286
+ + + N FLS + + + V +L+ K ++ +
Sbjct: 120 FINYITGIVSNVNSYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESV 179
Query: 287 DYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSIS 346
Y+ L + + P+ F + + K ++ + LGP S+S
Sbjct: 180 IYNNVLTIFELFVTFK------PIAEIFTKIDGFFADYSCK--PQDFERKTILGPILSLS 231
Query: 347 VFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLRNNP-TRETMLG 405
+ I +LQ ++ L+ I ++R + +R M+
Sbjct: 232 PIEAAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMIS 291
Query: 406 YLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKI------DLFKVDLMYPFH 459
Y A + N R L+ +GFM N+ + S + K+D Y +
Sbjct: 292 YFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNN 351
Query: 460 PNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTLHCTHLSLLPALA 519
P+ + +TRL +E + + TA +P F S C+FLTL H L L+
Sbjct: 352 PSL--FIDLSGETRLNSDFKEADAFYDKNRKTADSKPNFISDCFFLTLTYLHYGLGGTLS 409
Query: 520 KYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADAGL 579
++ ++ L++ ++++ V AR L + + +K +
Sbjct: 410 FEEKMGSEIKALKEEIEKVKKIAANH--DVFARFITAQLSKMEKALKTTESLRFALQGFF 467
Query: 580 LDKNLMKKSAVFYMSVAEYLLRVMTGEENLCNITL------------------PLPSTVR 621
++L + F + +L+RV+ E + L +
Sbjct: 468 AHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAP 527
Query: 622 PEFAALPEWYVEDIAEFLLFALQYIPG--IEDVVEDRCVTWLLVTMCSPQMIKNPYLLAK 679
F PE+ VE + L+ +Y + V + + + P+++ NP+L K
Sbjct: 528 VPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGK 587
Query: 680 LIEVLFISNPDVQTRTSN-LYDRIMAHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTI 738
L+++L + + + + D + ++ L L+ FY VE TGSSS+FYDKF
Sbjct: 588 LVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNS 647
Query: 739 RYHISLILKGMWES-PIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDESLESLKRIHE 796
RY IS+IL+ ++ P ++ I +S+ + FV+FV ++ND TFLLDE L +L +H
Sbjct: 648 RYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHN 707
Query: 797 TQELMRDEAAYAAIPAEQQLSR-ERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFL 855
Q + + A A E++ + +LA+ RQ +S L +++ +F + +I F+
Sbjct: 708 IQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFV 767
Query: 856 RPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHL-DCDEFA 914
PE+VYRL++MLN+NL+ L GPKC LKV P Y ++P+ LL L +Y++L + EF
Sbjct: 768 TPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQSEFI 827
Query: 915 AAIAQDERSFRKELFDDAADRMERRQILL-PSSLDKFRALASRAHEISVANIKKEVDYND 973
+A+A+DERSF + LF A D + R+ L P ++K A++A E A+ +++++Y D
Sbjct: 828 SAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGD 887
Query: 974 APDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEEL 1032
PDEF DPLM T+M+DPV LP S + +DRS I HLL+ STDPF+R PL +++ PNEEL
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEEL 947
Query: 1033 KKKIEAWKREKIEK 1046
++KI +K++K E+
Sbjct: 948 RQKILCFKKQKKEE 961
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase,
E4 polyubiquitin chain EL factor, phosphoprotein, UBL
conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A
3l1z_B
Length = 100
Score = 125 bits (316), Expect = 3e-34
Identities = 59/94 (62%), Positives = 71/94 (75%)
Query: 953 LASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSS 1012
A + EI N + E+DY+DAPDEFRDPLMDTLM DPV LPSG +MDRS+I+RHLLNS
Sbjct: 5 FAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP 64
Query: 1013 TDPFSRQPLFEDNLKPNEELKKKIEAWKREKIEK 1046
TDPF+RQ L E L+P ELK++I+AW REK
Sbjct: 65 TDPFNRQTLTESMLEPVPELKEQIQAWMREKQNS 98
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL
conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 120 bits (304), Expect = 8e-33
Identities = 56/76 (73%), Positives = 65/76 (85%)
Query: 968 EVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLK 1027
E+DY+DAPDEFRDPLMDTLM DPV LPSG VMDRS+I+RHLLNS TDPF+RQ L E L+
Sbjct: 5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLE 64
Query: 1028 PNEELKKKIEAWKREK 1043
P ELK++I+AW REK
Sbjct: 65 PVPELKEQIQAWMREK 80
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Length = 98
Score = 116 bits (293), Expect = 4e-31
Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 957 AHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDP 1015
+ S ++E Y DA DEF DP+M TLM DPV LPS V +DRS I RHLL+ TDP
Sbjct: 2 SSGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDP 61
Query: 1016 FSRQPLFEDNLKPNEELKKKIEAWKREKIEK 1046
F+R PL D ++PN ELK+KI+ W E+ ++
Sbjct: 62 FNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 107 bits (269), Expect = 5e-27
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Query: 889 KYGWDPRRLLNQLVDIYLHLDCDEFAAAIAQDERSFRKELFDDAADRMERRQI--LLPSS 946
K W+ + LH + A + E R + DD+ + + ++
Sbjct: 24 KKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKY 83
Query: 947 LDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVR 1006
L L S+ E + + PD + LM +P PSG+ DR I
Sbjct: 84 LMDMDELFSQVDE--------KRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEE 135
Query: 1007 HLL-NSSTDPFSRQPLFEDNLKPNEELKKKIEAWKRE 1042
HL DP +R PL +D L PN +K+ I+A+ +E
Sbjct: 136 HLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 87.8 bits (217), Expect = 1e-17
Identities = 90/529 (17%), Positives = 160/529 (30%), Gaps = 189/529 (35%)
Query: 613 TLPLP-------STVRPEFAA-LPEWYVEDIAEFLLFALQYIPGIEDVVEDRCVTWLLVT 664
L +P S ++ +F LPE FA P E
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEG-------FAADDEP--TTPAE---------- 59
Query: 665 MCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAH---KFSSQFLP-----SYL 716
L+ K + ++S+ V+ +D+++ +F + +L +
Sbjct: 60 -----------LVGKFLG--YVSSL-VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 717 MKFYTDVETTGSSSEFYDKFTIR-YHISLILKGMWESPIHRQAFINESKTGNQFVKFV-- 773
K + +TT + K I+ Y + I+ A GN + V
Sbjct: 106 AKLLQENDTTLVKT----KELIKNYITARIMAKRPFDKKSNSALFRAVGEGN--AQLVAI 159
Query: 774 -----NMLMNDTTFLLDESLESLKRIHET-QELMRDEAAYAAIPAEQQLSRERQLAADER 827
N D F +E L+ +++T L+ D ++A + LS +L
Sbjct: 160 FGGQGN---TDDYF--EE----LRDLYQTYHVLVGDLIKFSA----ETLS---ELIRTTL 203
Query: 828 QCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFN---LQQLCGPKCNHLKV 884
T G +++ +L P P+ Y LS ++ + QL H V
Sbjct: 204 DAEKVFTQG---LNILEWLE----NPSNTPDKDYLLSIPISCPLIGVIQLA-----HYVV 251
Query: 885 SSPDKYGWDPRRLLNQLV-------DIYLHLDCDEFAAAIAQ--DERSFRKE-------L 928
++ G+ P L + L + A AIA+ SF L
Sbjct: 252 TA-KLLGFTPGELRSYLKGATGHSQGLVT-------AVAIAETDSWESFFVSVRKAITVL 303
Query: 929 F--------------------DDAADR-------M------ERRQILLPSSLDKFRA-LA 954
F +D+ + M + Q+ ++K + L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ--DYVNKTNSHLP 361
Query: 955 SRAH-EISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSST 1013
+ EIS+ N + P +L + R L+ S
Sbjct: 362 AGKQVEISLVN---------GAKNL------VVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 1014 DPFS-RQPLFEDN------------LKP-----NEELKKKIEAWKREKI 1044
PFS R+ F + L P N++L K ++ + I
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Score = 70.1 bits (171), Expect = 4e-12
Identities = 102/608 (16%), Positives = 179/608 (29%), Gaps = 232/608 (38%)
Query: 75 ISEKPQ--AHGEPMEVEIEPV-----------RE--IKIVKAPSMEIT----PQIIENTI 115
S +P +HG +E + V +E KI+ P+ P +
Sbjct: 4 YSTRPLTLSHGS-LEHVL-LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 116 CKILSVTYSQVDASNTILYLPQVASVLTE-----LKQNSV-TITYQDLISQSLVELQDIL 169
K L S V+ S + + LTE L+ N + + L++ D
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA------AKLLQENDTT 115
Query: 170 LSKNNTCVLGHYTASYA--RVFEE----------ERNNPKKCSIF--------PFKDV-- 207
L K + + TA R F++ N + +IF F+++
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 208 LYEVRTQLVRHSILVLQSTNSDPMSSPLVKPLINQTLPNGFLSDFVCTLYEDEETFKQVM 267
LY+ LV LI + LS+ + T + E+ F Q +
Sbjct: 176 LYQT--------------------YHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGL 213
Query: 268 SPILQGVYKAMTEASIA-DPDY------SKPLEALTDLLEIRIGSNVW---P-------- 309
+ + + + S D DY S PL + L + + + P
Sbjct: 214 N-----ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 310 ---------VCSALVSQVQ----FQPELNTKAVGREIAVTSYLG-------PFFSISVFA 349
V + +++ F +V + I V ++G P S+
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESF-----FVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 350 -EDDVKVGNHFFS---SVTDLNNKSIQATLQNGLQLTRGFL---YRICHTMLRNNPTRET 402
ED ++ S S+++L Q +Q+ + T L ++ L N
Sbjct: 324 LEDSLENNEGVPSPMLSISNLT----QEQVQDYVNKTNSHLPAGKQV-EISLVNGAKNLV 378
Query: 403 MLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNK 462
+ G +L G N L+ ++ D Q+ +I PF
Sbjct: 379 VSGPPQSLYGLN---LTLRKAKAPSGLD----------QS---RI---------PF---- 409
Query: 463 SEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTL----HCTHLSLLPAL 518
S+ R+ KFS+ FL + H L PA
Sbjct: 410 ---------------SE--------------RKLKFSNR--FLPVASPFHSHLLV--PAS 436
Query: 519 AKYQRRVR---------SLR----------DLQKLVDELSS------TEET--WRGTVIA 551
+ + ++ DL+ L +S W T
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 552 RRNK--DF 557
+ DF
Sbjct: 497 KATHILDF 504
Score = 55.8 bits (134), Expect = 7e-08
Identities = 101/689 (14%), Positives = 180/689 (26%), Gaps = 283/689 (41%)
Query: 119 LSVTYSQVDASN---TILYLPQVASVLTE-----LKQNSVTITYQDLISQSLVELQDILL 170
L++++ ++ T + +AS L E L + + D + + EL +
Sbjct: 9 LTLSHGSLEHVLLVPTASFF--IASQLQEQFNKILPEPTEGFAADDEPT-TPAEL----V 61
Query: 171 SKNNTCVLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDP 230
K LG Y +S E + F VL L L +
Sbjct: 62 GK----FLG-YVSS-----LVEPSKVG-----QFDQVLN-----------LCLTEFENC- 94
Query: 231 MSSPLVKPLINQTLPNGFLSD-----FVCTLYEDEETFKQVMSPILQGVYKAMTEASIAD 285
+L L ++ +T +++ A +A
Sbjct: 95 -----------------YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR---IMAK 134
Query: 286 PDYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQ---------F--Q-------PELNTK 327
+ K SAL V F Q EL
Sbjct: 135 RPFDKKSN------------------SALFRAVGEGNAQLVAIFGGQGNTDDYFEEL--- 173
Query: 328 AVGREIAVT--SYLGPFFSISV-----FAEDDVKVGNHFFSSVTD----LNNK------- 369
R++ T +G S + F+ + L N
Sbjct: 174 ---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDA-EKVFTQGLNILEWLENPSNTPDKD 229
Query: 370 ---SIQATL-QNGL-QLTRGFLYRI-CHTMLRNNPTRETMLGYLAALVGHNEKRAQLQSE 423
SI + G+ QL Y + LG+ E R+ L+
Sbjct: 230 YLLSIPISCPLIGVIQLAH---YVVTAKL-----------LGF-----TPGELRSYLKG- 269
Query: 424 ESTLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVED 483
+T G + AV A +D + F + + ++
Sbjct: 270 -ATGHSQGL---VTAVAIAETDSWE--------SFFVSVRKAIT---------------- 301
Query: 484 WLASLSSTAWREPKFSSTCWFLTLHCT----HLSLLPALAKYQRR-----------VRSL 528
L F F+ + C + SL P++ + + +L
Sbjct: 302 VL------------F-----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 529 RD--LQKLVDELSSTEETWRGTVIARRN--KDF--------LKRWKHQIKKLSRSKACAD 576
+Q V++ +S + I+ N K+ L ++K A
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-----KAP 399
Query: 577 AGLLDKN---LMKKSAVFYMSVAEYLLRVMTGEENLCNITLPLPST-VRPEFAALPEWYV 632
+G LD++ ++ F +L + P S + P + + V
Sbjct: 400 SG-LDQSRIPFSERKLKFSN---RFL-----------PVASPFHSHLLVPASDLINKDLV 444
Query: 633 EDIAEFLLFALQYIP------G----------IEDVVED---RCVTWLLVTMCSPQMIKN 673
++ F +Q IP G E +V+ V W T I
Sbjct: 445 KNNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-- 501
Query: 674 PYLLAKLIEVLFISNPDVQTRTSNLYDRI 702
+ F P + L R
Sbjct: 502 ---------LDF--GPGGASGLGVLTHRN 519
Score = 55.1 bits (132), Expect = 1e-07
Identities = 104/562 (18%), Positives = 176/562 (31%), Gaps = 181/562 (32%)
Query: 299 LE--IRIGSNVWPVCSALVSQVQFQPELN--TKAVGREIAVTS-------YLGPFFSISV 347
LE + + + + + S L Q QF L T+ + T+ +LG + S+
Sbjct: 16 LEHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKFLG--YVSSL 71
Query: 348 FAEDDVK--------VGNHFFSSVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLRNNPT 399
V F + L I A LQ L + +++N
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKT-KELIKN--- 125
Query: 400 RETMLGYLAALVGHNEKRAQLQSEESTL---AGDGFMLNLLAVF--QALSDKIDLFKVDL 454
Y+ A KR + S L G+G L+A+F Q +D D F+ +L
Sbjct: 126 ------YITAR--IMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTD--DYFE-EL 173
Query: 455 --MY-PFHPNKSEMLSFKNDTRLKMSSQE------------VEDWLASLSSTAWREPKFS 499
+Y +H +++ F +T ++ + +WL + S+T P
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT----PDKD 229
Query: 500 STCWFLTLHCTHLSL----LPALAKYQRRVRSL-RDLQKLVDELSSTEETWRGTVIAR-- 552
+L L +S + LA Y + L +L L +G V A
Sbjct: 230 ----YL-LSIP-ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 553 ----RNKDFLKRWKHQIKKL----SRSKACADAGLLDKNLMKKSAVFYMSVAEYLLRV-- 602
+ F + I L R L ++++ S V +L +
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 603 MTGEE-----NLCNITLPLPSTVRPEFAAL---PEWYV-----EDIAEFLLFALQYIPGI 649
+T E+ N N LP V +L + V + L+ L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQV---EISLVNGAKNLVVSGPPQS-----LYGL------ 389
Query: 650 EDVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRT--SNLYDRIMAHKF 707
L + K P S D Q+R S +R KF
Sbjct: 390 --------NLTL-------RKAKAP------------SGLD-QSRIPFS---ER--KLKF 416
Query: 708 SSQFLP------SYLMK-----FYTDVETTG---SSSEF----YDKFT---IRYHISLIL 746
S++FLP S+L+ D+ ++ + YD F +R I
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 747 KGM----------WESPIHRQA 758
+ + WE+ +A
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKA 498
Score = 49.3 bits (117), Expect = 7e-06
Identities = 49/321 (15%), Positives = 99/321 (30%), Gaps = 106/321 (33%)
Query: 53 GSIGQKVNLG-----TSPM------EIDK--------SVIKISEKPQAHGEPMEVEI--- 90
GS Q+ +G TS D S++ I P+ + I
Sbjct: 1625 GS--QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN-----NPVNLTIHFG 1677
Query: 91 ----EPVRE--IKIVKAPSME---ITPQIIENTICKILSVTYSQVDASNTILYLP---QV 138
+ +RE ++ ++ T +I + S T+ + +L Q
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR---SEKGLLSATQFTQP 1734
Query: 139 ASVLTELKQNSVTITYQDLISQSLVELQDILLSKNNTCVLGH----YTA--SYARVFEEE 192
A L ++DL S+ L+ + GH Y A S A V
Sbjct: 1735 ALTLM-----EKAA-FEDLKSKGLI--------PADATFAGHSLGEYAALASLADV---- 1776
Query: 193 RNNPKKCSIFPFKDVLYEV--RTQLVRHSILVLQSTNSDP-MSSPLVKP-LINQTLPNGF 248
+ ++ V R ++ ++ + S+ M + + P + +
Sbjct: 1777 ---------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA--INPGRVAASFSQEA 1825
Query: 249 LSDFVCTLYEDEETFKQVM---SPILQGVYKAMTEASIA-DPDYSKPLEALTDLL-EIRI 303
L V + + +++ Q V A D + L+ +T++L I++
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYV--------AAGD---LRALDTVTNVLNFIKL 1874
Query: 304 GS-NVWPVCSALVSQVQFQPE 323
++ + Q E
Sbjct: 1875 QKIDIIEL------QKSLSLE 1889
Score = 43.1 bits (101), Expect = 5e-04
Identities = 56/340 (16%), Positives = 106/340 (31%), Gaps = 134/340 (39%)
Query: 181 YTAS-YAR-VFEE----------------ERNNPKKCSI-FPFKDVLYEVRTQLVR--HS 219
Y S A+ V+ NNP +I F + + + +R +S
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE------KGKRIRENYS 1689
Query: 220 ILVLQSTNSDPMSSPLVKPLINQTL-------PNGFLSDFVCT-------------LYED 259
++ ++ + + + IN+ G LS T +ED
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---TQFTQPALTLMEKAAFED 1746
Query: 260 --EETFKQVMSPI----LQGVYKAMTEASIADPDYSKPLEALTDLLEIRIGSNVWPVCSA 313
+ + L G Y A+ AS+AD +E+L +++ R G
Sbjct: 1747 LKSKGLIPADATFAGHSL-GEYAAL--ASLAD---VMSIESLVEVVFYR-G--------- 1790
Query: 314 LVSQVQFQPELNTKAVGR-EIAVTSYLGPFFSISVFAEDDVKVGNHFFSSVTDLNNKSIQ 372
AV R E+ ++Y + A + +V + +++Q
Sbjct: 1791 ---------MTMQVAVPRDELGRSNY-------GMIAINPGRV-------AASFSQEALQ 1827
Query: 373 ATLQNGLQLTRGFL----YRICHTMLRNNPTRETMLG--YLAALVGHNEKRAQLQSEEST 426
++ + T + Y N Y+AA G + RA L T
Sbjct: 1828 YVVERVGKRTGWLVEIVNY--------NVE------NQQYVAA--G--DLRA-LD----T 1864
Query: 427 LAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNKSEML 466
+ +LN + + KID+ ++ + L
Sbjct: 1865 VTN---VLNFIKL-----QKIDIIELQKSLSLEEVE-GHL 1895
Score = 33.9 bits (77), Expect = 0.41
Identities = 47/288 (16%), Positives = 98/288 (34%), Gaps = 70/288 (24%)
Query: 379 LQLTRGFLYRICHTMLRNNPTRETMLGYLAALVGH--NEKRAQLQSEESTLAGDGFMLNL 436
+ T GF I ++ NNP T+ + G E + + E DG L
Sbjct: 1653 FKDTYGF--SILD-IVINNPVNLTI--HFGGEKGKRIRENYSAMIFETIV---DGK-LKT 1703
Query: 437 LAVFQALSDKIDLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREP 496
+F+ +++ + +L + T+ +Q L + A+ +
Sbjct: 1704 EKIFKEINEHST----SYTF-RSEK--GLL---SATQ---FTQPA---LTLMEKAAFEDL 1747
Query: 497 K----FSSTCWFLTLHCTHLSL-----LPALAKYQRRVRSLRDLQKLVDELSSTEETWRG 547
K + F H SL L +LA V S+ L ++V RG
Sbjct: 1748 KSKGLIPADATF----AGH-SLGEYAALASLA----DVMSIESLVEVVFY--------RG 1790
Query: 548 TVIARR-NKDFLKRWKHQIKKLSRSK---ACADAGLLD--KNLMKKSAVFYMSVAEYLLR 601
+ +D L R + + ++ + + + L + + K++ + + Y +
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-VEIVNYNVE 1849
Query: 602 ----VMTGE----ENLCNITLPLPSTVRPEFAALPE-WYVEDIAEFLL 640
V G+ + + N+ L + + L + +E++ L
Sbjct: 1850 NQQYVAAGDLRALDTVTNV-LNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase,
E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP:
g.44.1.2
Length = 78
Score = 73.0 bits (180), Expect = 4e-16
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNLKPNEE 1031
+ P+ FR P+ LM+DPV + +G +RS I + L T P S++ L L PN
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
Query: 1032 LKKKIEAWKRE 1042
LK I W
Sbjct: 64 LKSLIALWCES 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.1 bits (181), Expect = 2e-13
Identities = 101/700 (14%), Positives = 196/700 (28%), Gaps = 247/700 (35%)
Query: 237 KPLINQTLPNGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADPDYSKPLEALT 296
K +++ F+ +F C +D K ++S K + I D L
Sbjct: 19 KDILSVFEDA-FVDNFDCKDVQDMP--KSILS-------KEEIDHIIMSKDAVSGTLRLF 68
Query: 297 DLLEIRIGSNV--------------WPVCSALVSQVQF---QPELNTKAVGREIAVTSYL 339
L + + + L+S ++ QP + T+
Sbjct: 69 WTLLSK-QEEMVQKFVEEVLRINYKF-----LMSPIKTEQRQPSMMTRMY------IEQR 116
Query: 340 GPFF-SISVFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLRNNP 398
+ VFA+ +V + L+ L LR
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPY-------------LKLRQALL------------ELRPAK 151
Query: 399 --TRETMLGY----LAALVGHNEKRAQLQSEESTLAGDGFMLNL---------LAVFQAL 443
+ +LG +A V + K + + F LNL L + Q L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKV------QCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 444 SDKIDLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKF----- 498
+ID PN + + + +K+ ++ L L + +
Sbjct: 206 LYQID-----------PNWTSRSD--HSSNIKLRIHSIQAELRRL----LKSKPYENCLL 248
Query: 499 ------SSTCW--FLTLHCTHL------SLLPALAKYQRRVRSLRDLQKLVDELSSTEE- 543
++ W F L C L + L+ SL + +
Sbjct: 249 VLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL 306
Query: 544 --TWRGT------------------VIARRNKDFLKRWKH----QIKKLSRS-KACADAG 578
+ +IA +D L W + KL+ ++ +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV- 365
Query: 579 LLDKNLMKKS----AVFYMSVAEYLLRVMTGEENLCNITLPLPSTVRPEFAALPEWYVED 634
L+ +K +VF + +I P+ + + + W+
Sbjct: 366 -LEPAEYRKMFDRLSVF--------------PPSA-HI----PTIL---LSLI--WFDVI 400
Query: 635 IAEFLLFALQYIPGIEDVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTR 694
++ + VV ++ + LV K P I +++ +++ +
Sbjct: 401 KSD-----------VMVVV-NKLHKYSLV-------EKQPKESTISIPSIYL---ELKVK 438
Query: 695 TSNLYDRIMAHKFSSQFLPSYLMKFYTDVETTGSSSE---FYDKFTIRYHISLILKGMWE 751
N Y H+ + Y + D + FY I +H+ I
Sbjct: 439 LENEYA---LHR---SIVDHYNIPKTFDSDDLIPPYLDQYFY--SHIGHHLKNIEHPE-R 489
Query: 752 SPIHRQAFIN----ESK---TG---NQFVKFVNMLM-----------NDTTF--LLDESL 788
+ R F++ E K N +N L ND + L++ L
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 789 ESLKRIHET----------QELMRDEAAYAAIPAEQQLSR 818
+ L +I E + + E A +Q+ R
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 69.1 bits (168), Expect = 6e-12
Identities = 92/677 (13%), Positives = 196/677 (28%), Gaps = 213/677 (31%)
Query: 453 DLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTA-----WREPKFSSTCWFLTL 507
D++ F F ++ ++V+D S+ S S
Sbjct: 20 DILSVFEDA------FVDN----FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR--- 66
Query: 508 HCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKD----------- 556
L L Q + +QK V+E+ + + I +
Sbjct: 67 ------LFWTLLSKQEEM-----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 557 ----------FLK----RWK--HQIKK----LSRSK------------------ACADAG 578
F K R + ++++ L +K C
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 579 LLDKNLMKKSAVFYMSVAEY-----LLRVMTGEENLCNITLPLPSTVRPEFAALPEWYVE 633
+ K +F++++ +L ++ + L P T R + ++ + +
Sbjct: 176 VQCKM---DFKIFWLNLKNCNSPETVLEML---QKLLYQIDP-NWTSRSDHSSNIKLRIH 228
Query: 634 DIAEFL--LFALQYIPGIEDVVEDRCVTWLLV--TMCSPQMIKNPYLLAKLIEVLFISNP 689
I L L + C LLV + + + F
Sbjct: 229 SIQAELRRLLKSKPYE--------NC---LLVLLNVQNAKAWN-----------AF---- 262
Query: 690 DVQ------TRTSNLYDRIMAHKFSSQFLPSYLMKFYTDVETTGSSSEFYD--------- 734
++ TR + D + A + L + M D E ++ D
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPRE 321
Query: 735 -KFTIRYHISLILKGMWESPIHRQAFINESKTGNQFVKFVNMLMNDTTFLLDESLESLKR 793
T +S+I I + K VN + T +++ SL L+
Sbjct: 322 VLTTNPRRLSII-----------AESIRDGLATWDNWKHVN--CDKLTTIIESSLNVLEP 368
Query: 794 IHETQELMRDEAAY---AAIPAE-------QQLSRERQLAADERQCRSYLTLGRETVDMF 843
E +++ + + A IP + + + ++ Y + ++ +
Sbjct: 369 -AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKEST 425
Query: 844 HYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKY----GWDPRRLLN 899
+ P + L L N L H + D Y +D L+
Sbjct: 426 ISI----------PSIYLELKVKLE-NEYAL------HRSIV--DHYNIPKTFDSDDLIP 466
Query: 900 QLVDIYL------HLDCDEFAAAIAQDER--SFRKELFDDAADRMERRQILLPSSLDKFR 951
+D Y HL I ER FR D +E++ ++ +
Sbjct: 467 PYLDQYFYSHIGHHL------KNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASG 518
Query: 952 ALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSV-IVRHLLN 1010
++ + ++ +K Y D + L++ +++ + ++ + ++R L
Sbjct: 519 SILN-----TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 1011 SSTDPFSRQPLFEDNLK 1027
+ + +FE+ K
Sbjct: 574 AEDE-----AIFEEAHK 585
Score = 59.5 bits (143), Expect = 5e-09
Identities = 73/539 (13%), Positives = 162/539 (30%), Gaps = 136/539 (25%)
Query: 604 TGEENLCNITLPLPSTVRPEFAALPEWYVEDIAEFLLFAL-----QYIPGIEDVVED-RC 657
TGE + L F + +D+ + L +I +D V
Sbjct: 11 TGEHQYQYKDI-LS-VFEDAFVD--NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 658 VTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIMAHKFSSQFL-PSYL 716
+ W L++ K ++ K +E + + Y +M+ ++ PS +
Sbjct: 67 LFWTLLS-------KQEEMVQKFVEEVL--RIN--------YKFLMS-PIKTEQRQPSMM 108
Query: 717 MKFYTD-VETTGSSSEFYDKFTI----------------RYHISLILKGMW---ESPIHR 756
+ Y + + + ++ + K+ + R ++++ G+ ++ +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 757 QAFINESKTGNQF---VKFVNMLMNDTTFLLDESLESL-KRIHETQELMRDEAAYAAIPA 812
K + + ++N+ ++ + E L+ L +I D ++ +
Sbjct: 169 DV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 813 EQQLSRERQLAADERQCRSYLTL----GRETVDMF------------------------- 843
+ R+L + L L + + F
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 844 HYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGP----KCNHLKVS------SPDKYGWD 893
H E+ L L+ Q L P N ++S WD
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 894 PRRLLNQLVDIYLHLDCDEFAAAI-----AQDERSFRKELFDDAADRMERRQILLPSSLD 948
+ H++CD+ I + +RK +FD + + +P+ L
Sbjct: 346 N----------WKHVNCDKLTTIIESSLNVLEPAEYRK-MFDRLS--VFPPSAHIPTIL- 391
Query: 949 KFRALASRAHEISVANIKKE-VDYNDA---PDEFRDPLMDTLMEDPVTLPSGVVMDRSVI 1004
+ + V + + Y+ P E + +E V L + + RS++
Sbjct: 392 -LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 1005 VRHLLNSSTDPFSRQPLFEDN---------LKPNEELKKKIE--------AWKREKIEK 1046
+ + + D P + D LK E ++ + +KI
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Score = 48.7 bits (115), Expect = 1e-05
Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 46/194 (23%)
Query: 93 VREIKIVKAPSMEITPQIIENTICKIL------SVTYSQVDASNTILYLPQVASVLTELK 146
V+ K A ++ CKIL VT A+ T + L + LT +
Sbjct: 253 VQNAKAWNA--FNLS--------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 147 QNSVTITYQDLISQSL-VELQDI---LLS------KNNTCVLGHY----TASYARVFE-- 190
S+ + Y D Q L E+ LS ++ ++ + E
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 191 -------EERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDPMSSPLVKPLINQT 243
E R + S+FP + T L+ S++ SD M +V L +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFP-PSAH--IPTILL--SLIWFDVIKSDVMV--VVNKLHKYS 415
Query: 244 LPNGFLSDFVCTLY 257
L + ++
Sbjct: 416 LVEKQPKESTISIP 429
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 66.5 bits (162), Expect = 6e-12
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 920 DERSFRKELFDDAADRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFR 979
+E E +D ++ + + ++ K+++ PD
Sbjct: 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDI-----PDYLC 210
Query: 980 DPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNLKPNEELKKKIEA 1038
+ LM +P PSG+ DR I HL +P +R PL ++ L PN +K+ I+A
Sbjct: 211 GKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDA 270
Query: 1039 WKRE 1042
+ E
Sbjct: 271 FISE 274
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 56.2 bits (136), Expect = 2e-10
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 981 PLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKK 1034
+ + PV P S + ++S++ +++ ++ DP + +PL + + +
Sbjct: 7 AISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQ 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 51.1 bits (122), Expect = 3e-08
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 974 APDEFRDPLMDTLMEDPVTLPS-GVVMDRSVIVRHLLNSSTDPF---------SRQPLFE 1023
F P+ M+ PV G + IVR + + S + +
Sbjct: 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63
Query: 1024 DNLKPNEELKKKIEAWKREK 1043
+L +E L++ IE +++
Sbjct: 64 SDLIQDEALRRAIENHNKKR 83
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA
splicing; NMR {Homo sapiens}
Length = 92
Score = 40.9 bits (96), Expect = 1e-04
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 972 NDAPDEFRDPLMDTLMEDPVTLPS-GVVMDRSVIVRHLLNSSTDPFS-----RQPLFEDN 1025
+ PDE + +M D V +P G I LL S D + + + D
Sbjct: 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDVSPDA 65
Query: 1026 LKPNEELKKKIEAWKREKIEK 1046
L N+ L++ + +K E
Sbjct: 66 LIANKFLRQAVNNFKNETGYT 86
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 42.2 bits (98), Expect = 5e-04
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 977 EFRDPLMDTLMEDPVTLPS-GVVMDRSVIVRHLLNSSTD----PFSRQPLFEDNLKPNEE 1031
E P+ E P+ V DR I +L +T Q + + +
Sbjct: 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPI 240
Query: 1032 LKKKIEAWKREKIEK 1046
++ + + K ++ ++
Sbjct: 241 MELRCKIAKMKESQE 255
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 33.6 bits (77), Expect = 0.056
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 986 LMEDPVTLPS-GVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
+ +P I + L + P + E +LK N L + +++ +
Sbjct: 31 YFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 29.4 bits (66), Expect = 0.92
Identities = 10/46 (21%), Positives = 13/46 (28%)
Query: 986 LMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEE 1031
PV+LP V + RQ + ED L
Sbjct: 24 TCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPS 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.3
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 789 ESLKRIHETQELMRDEAAYA-AIPA 812
++LK++ + +L D++A A AI A
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKA 44
Score = 28.8 bits (63), Expect = 5.3
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 562 KHQIKKL-SRSKACAD 576
K +KKL + K AD
Sbjct: 19 KQALKKLQASLKLYAD 34
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin
synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE;
1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3
d.104.1.3
Length = 341
Score = 31.2 bits (71), Expect = 1.7
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 928 LFDDAADRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLM 987
LFD + L S DKF + ++ V NI E+ ++FRD L++ +
Sbjct: 162 LFDVDLSVLAN---ALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMK 218
Query: 988 ED 989
++
Sbjct: 219 KE 220
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.9
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 523 RRVRSLRDLQKLVDELSS-TEETWRGTVIARRNK-DFLKRWKHQIKKLSRSKACADAGLL 580
R + R LQ+L D S E+ WR A+++ ++ +R Q++K + AD
Sbjct: 91 REEQRKR-LQEL-DAASKVMEQEWREK--AKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Query: 581 DK 582
+
Sbjct: 147 QQ 148
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 29.1 bits (65), Expect = 2.9
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 986 LMEDPVTLPSGVVMDRSVIVRHLLNSSTD-PFSRQPLFE-------DNLKPNEELKKKIE 1037
++ +PVTLP + + + +S PF R+ + N N EL I+
Sbjct: 24 ILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQ 83
Query: 1038 AWKREKIEK 1046
+ +
Sbjct: 84 KHYPRECKL 92
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 30.5 bits (69), Expect = 2.9
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 450 FKVDLMYPFHPNKSEMLSF-KNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTLH 508
+V MY + + L+F K ++ ++ + W +S P S+ T
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFP--SNYVKLTTDM 60
Query: 509 CTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEET 544
L + R Q + EL TEE
Sbjct: 61 DPSQQWCSDLHLLDMLTPTERKRQGYIHELIVTEEN 96
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 28.7 bits (64), Expect = 3.8
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 986 LMEDPVTLPS-GVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
++ +PV L + + + + + P P + +LK N +L I+ + +
Sbjct: 31 ILREPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea,
P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A
{Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Length = 256
Score = 29.3 bits (65), Expect = 6.5
Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 24/166 (14%)
Query: 480 EVEDWLASLSSTAW-----REPKFSSTCWFLTLH----CTHLSLLPALAKYQRRVR---- 526
V + L L R+P++ + C + H + L++L AL Y+ +
Sbjct: 9 RVIETLRRLGIEEVLKLERRDPQYRAVCNVVKRHGETVGSRLAMLNALISYRLTGKGEEH 68
Query: 527 --------SLRDLQKLVDELSSTEETWRGTVIARRNK-DFLKRWKHQIKKLSRSKACAD- 576
S ++ L + ET I + + + L
Sbjct: 69 WEYFGKYFSQLEVIDLCRDFLKYIETSPFLKIGVEARKKRALKACDYVPNLEDLGLTLRQ 128
Query: 577 -AGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENLCNITLPLPSTVR 621
+ ++ +K+ VF + + Y G + +P+P R
Sbjct: 129 LSHIVGARREQKTLVFTIKILNYAYMCSRGVNRVLPFDIPIPVDYR 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.384
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,573,464
Number of extensions: 941678
Number of successful extensions: 2101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2058
Number of HSP's successfully gapped: 47
Length of query: 1046
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 943
Effective length of database: 3,825,930
Effective search space: 3607851990
Effective search space used: 3607851990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.0 bits)