RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14915
(1046 letters)
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 65.2 bits (158), Expect = 2e-13
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 966 KKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFED 1024
++E Y DA DEF DP+M TLM DPV LPS V +DRS I RHLL+ TDPF+R PL D
Sbjct: 11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70
Query: 1025 NLKPNEELKKKIEAWKREKIEK 1046
++PN ELK+KI+ W E+ ++
Sbjct: 71 QIRPNTELKEKIQRWLAERKQQ 92
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 62.8 bits (152), Expect = 7e-13
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 973 DAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFEDNLKPNEE 1031
+ P+ FR P+ LM+DPV + +G +RS I + L T P S++ L L PN
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
Query: 1032 LKKKIEAWKRE 1042
LK I W
Sbjct: 64 LKSLIALWCES 74
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 47.9 bits (113), Expect = 1e-07
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 966 KKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHL-LNSSTDPFSRQPLFED 1024
K+++ PD + LM +P PSG+ DR I HL +P +R PL ++
Sbjct: 1 KRDI-----PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 55
Query: 1025 NLKPNEELKKKIEAWKRE 1042
L PN +K+ I+A+ E
Sbjct: 56 QLIPNLAMKEVIDAFISE 73
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 39.3 bits (91), Expect = 2e-04
Identities = 9/88 (10%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 959 EISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTD---P 1015
+ V ++ ++ P+ L+++PV+ + + +++ L P
Sbjct: 5 ALRVEEVQNVIN--AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP 62
Query: 1016 FSRQPLFEDNLKPNEELKKKIEAWKREK 1043
+ + + +L+ + + +E +
Sbjct: 63 LCKNDITKRSLQESTRFSQLVEELLKII 90
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 97
Score = 34.8 bits (79), Expect = 0.009
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 976 DEFRDPL-MDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKK 1034
R + L E + + + + + P P + +LK N +L
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQDLKINRQLDS 78
Query: 1035 KIEAWKREK 1043
I+ + +
Sbjct: 79 MIQLCSKLR 87
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 31.7 bits (71), Expect = 0.039
Identities = 6/46 (13%), Positives = 22/46 (47%)
Query: 983 MDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKP 1028
++ S + ++S++ +++ ++ DP + +PL + +
Sbjct: 7 GKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 52
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 28.1 bits (63), Expect = 0.81
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 451 KVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWL 485
+V +Y F + L+FK+ + + +W
Sbjct: 4 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWW 38
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus
[TaxId: 10090]}
Length = 53
Score = 27.6 bits (61), Expect = 0.99
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 455 MYPFHPNKSEMLSFKNDTRLKMSSQEVEDW 484
+Y + N + L+ + D + W
Sbjct: 4 LYDYQTNDPQELALRCDEEYYLLDSSEIHW 33
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 26.9 bits (60), Expect = 2.1
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 455 MYPFHPNKSEMLSFKNDTRLKMSSQEVEDWL 485
++ F+P +S L+FK + + +++ +W
Sbjct: 8 LFDFNPQESGELAFKRGDVITLINKDDPNWW 38
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 27.6 bits (61), Expect = 2.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 455 MYPFHPNKSEMLSFKNDTRLKMSSQEVEDW 484
MY + N + LSF + + +++ DW
Sbjct: 40 MYDYAANNEDELSFSKGQLINVMNKDDPDW 69
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.7 bits (66), Expect = 2.3
Identities = 30/250 (12%), Positives = 76/250 (30%), Gaps = 33/250 (13%)
Query: 109 QIIENTICKILSVTYSQVDASNTILYLPQVASVLTELKQNSVTITYQDLISQSLVELQDI 168
+I+ + + TY V A + L ++ + +V + +++ L + +
Sbjct: 227 RIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV----RGRLTECLETILNK 282
Query: 169 LLSKNNTCVLGHYTASYARVFE------------EERNNPKKCSIFPFKDVLYEVRTQLV 216
+ + H A A +FE + +R +
Sbjct: 283 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLAL 342
Query: 217 RHSILVLQSTNSDPMSSPLVKPLINQTLPNGFLSDFVCTLY-----EDEETFKQVMSPIL 271
+ S S ++ +IN +S + D +Q+++ +L
Sbjct: 343 ESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEML 402
Query: 272 QGV------YKAMTEASIAD------PDYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQ 319
+ + +A DY+ ++ + +L+ I V ++ V
Sbjct: 403 SYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVI 462
Query: 320 FQPELNTKAV 329
+ ++ A
Sbjct: 463 NRDDVQGYAA 472
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 26.6 bits (59), Expect = 2.4
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 451 KVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWL 485
+V+ ++ + + E L F+ + + S+ E+WL
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWL 41
>d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 492
Score = 29.0 bits (63), Expect = 3.2
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 1008 LLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKRE 1042
L + DP R L + +L +++ + +
Sbjct: 433 LFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKH 467
>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 26.9 bits (59), Expect = 3.7
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 449 LFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDW 484
+FKV + + ++ L K + + + +
Sbjct: 12 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEE 47
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 26.1 bits (57), Expect = 5.1
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 983 MDTLMEDPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFED--NLKPNEELKKKI 1036
++ + LP I R + + T P + P+ ++ + E ++
Sbjct: 12 LEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDSEFGDQL 67
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type
protein CysB {Klebsiella aerogenes [TaxId: 28451]}
Length = 237
Score = 28.0 bits (61), Expect = 6.1
Identities = 31/236 (13%), Positives = 56/236 (23%), Gaps = 31/236 (13%)
Query: 707 FSSQFLPSYLMKF---YTDVE---TTGSSSEFYDKFTIRYHISLILKGMWESPIHRQAFI 760
+ LP + F Y V GS ++ + + I
Sbjct: 16 QARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLP 75
Query: 761 NESKTGNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYAAIPAEQQLSRER 820
+ V + L + ++E + + R E A A
Sbjct: 76 CYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVF 135
Query: 821 QLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCN 880
+ + +P P+LV N
Sbjct: 136 TATDADVIKTYVRL-----GLGVGVIASMAVDPVSDPDLVKLD---------------AN 175
Query: 881 HLKVSSPDKYGWDPRRLLNQLVDIYL-----HLDCDEFAAAIAQDERSFRKELFDD 931
+ S K G+ L + ++ HL D A+A + +F D
Sbjct: 176 GIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVVDTAVALRSNEDIEAMFKD 231
>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Length = 490
Score = 27.8 bits (61), Expect = 8.4
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 310 VCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSISVFAEDDVKVGNHFFSSVTDLNNK 369
V ++LV +V V R +L +++ D T L +
Sbjct: 173 VKASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVISRFDTALATR 232
Query: 370 SIQATLQNGLQLT-RGFLYRICHTMLRNNPT 399
+ T NG ++ R YR + + P
Sbjct: 233 GLFYTDSNGREILERRRNYRPTWKLNQTEPV 263
>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain
{Clostridium perfringens, different strains [TaxId:
1502]}
Length = 249
Score = 27.3 bits (60), Expect = 8.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 369 KSIQATLQNGLQLTRGFLYRICHTMLRNN 397
+ + TL N + T G++YR H + N
Sbjct: 219 YAAKVTLANSQKGTAGYIYRFLHDVSEGN 247
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.384
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,768,709
Number of extensions: 176999
Number of successful extensions: 502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 24
Length of query: 1046
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 951
Effective length of database: 1,103,246
Effective search space: 1049186946
Effective search space used: 1049186946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)