Query psy14916
Match_columns 130
No_of_seqs 134 out of 1041
Neff 6.6
Searched_HMMs 46136
Date Sat Aug 17 00:14:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03335 TCP1_alpha TCP-1 (CTT 99.9 5.4E-28 1.2E-32 206.4 10.4 110 2-111 418-527 (527)
2 TIGR02341 chap_CCT_beta T-comp 99.9 7.5E-28 1.6E-32 205.4 11.2 104 2-113 415-518 (519)
3 cd03336 TCP1_beta TCP-1 (CTT o 99.9 8.6E-28 1.9E-32 204.8 11.1 103 2-112 414-516 (517)
4 TIGR02340 chap_CCT_alpha T-com 99.9 1.6E-27 3.4E-32 204.0 11.9 113 2-114 422-534 (536)
5 PTZ00212 T-complex protein 1 s 99.9 9.9E-28 2.2E-32 205.2 10.6 103 2-112 426-528 (533)
6 TIGR02347 chap_CCT_zeta T-comp 99.9 1.1E-27 2.5E-32 204.9 10.8 103 2-112 426-528 (531)
7 cd03342 TCP1_zeta TCP-1 (CTT o 99.9 1.8E-27 3.9E-32 201.6 11.0 101 2-110 383-483 (484)
8 TIGR02344 chap_CCT_gamma T-com 99.9 2.7E-27 5.9E-32 201.9 11.2 103 2-111 421-523 (525)
9 TIGR02342 chap_CCT_delta T-com 99.9 1.9E-27 4.2E-32 202.7 9.3 100 2-109 417-516 (517)
10 cd03340 TCP1_eta TCP-1 (CTT or 99.9 4.4E-27 9.6E-32 200.5 10.6 103 2-111 419-521 (522)
11 KOG0361|consensus 99.9 3.6E-27 7.7E-32 194.1 8.7 106 1-114 422-527 (543)
12 TIGR02346 chap_CCT_theta T-com 99.9 1.1E-26 2.3E-31 198.9 11.3 106 2-115 418-525 (531)
13 cd03337 TCP1_gamma TCP-1 (CTT 99.9 7.7E-27 1.7E-31 197.5 9.9 100 2-108 380-479 (480)
14 TIGR02345 chap_CCT_eta T-compl 99.9 1.3E-26 2.8E-31 197.8 10.8 101 2-110 420-520 (522)
15 cd03338 TCP1_delta TCP-1 (CTT 99.9 1.2E-26 2.6E-31 197.5 10.0 100 2-109 416-515 (515)
16 cd03343 cpn60 cpn60 chaperonin 99.9 1.7E-26 3.6E-31 196.5 10.6 101 2-110 417-517 (517)
17 cd03339 TCP1_epsilon TCP-1 (CT 99.9 1.2E-26 2.6E-31 198.0 9.7 100 2-108 427-526 (526)
18 TIGR02339 thermosome_arch ther 99.9 2.6E-26 5.6E-31 195.7 10.8 100 2-109 420-519 (519)
19 cd03341 TCP1_theta TCP-1 (CTT 99.9 2E-26 4.4E-31 194.6 9.5 100 2-109 370-471 (472)
20 PRK00013 groEL chaperonin GroE 99.9 6.7E-26 1.4E-30 194.6 12.3 100 4-114 429-528 (542)
21 PRK12852 groEL chaperonin GroE 99.9 8.1E-26 1.8E-30 194.1 12.3 107 2-120 429-535 (545)
22 PRK12849 groEL chaperonin GroE 99.9 7.3E-26 1.6E-30 194.4 11.4 99 2-113 428-526 (542)
23 TIGR02343 chap_CCT_epsi T-comp 99.9 5.5E-26 1.2E-30 194.5 10.5 101 2-109 431-531 (532)
24 PRK12851 groEL chaperonin GroE 99.9 1.3E-25 2.8E-30 192.8 12.0 100 2-114 429-528 (541)
25 PRK12850 groEL chaperonin GroE 99.9 1.1E-25 2.4E-30 193.2 11.7 98 4-113 430-527 (544)
26 CHL00093 groEL chaperonin GroE 99.9 1.8E-25 3.9E-30 191.4 10.9 99 2-112 428-527 (529)
27 cd00309 chaperonin_type_I_II c 99.9 2.5E-25 5.5E-30 186.9 11.0 99 2-108 366-464 (464)
28 PTZ00114 Heat shock protein 60 99.9 1.5E-24 3.4E-29 186.6 12.2 98 5-113 446-543 (555)
29 COG0459 GroL Chaperonin GroEL 99.9 2E-24 4.4E-29 184.9 11.1 101 4-114 416-518 (524)
30 KOG0363|consensus 99.9 6.4E-25 1.4E-29 180.0 6.9 107 2-116 419-525 (527)
31 TIGR02348 GroEL chaperonin Gro 99.9 5.9E-24 1.3E-28 181.9 11.2 97 3-111 427-523 (524)
32 cd03344 GroEL GroEL_like type 99.9 4.1E-24 8.9E-29 182.7 9.5 94 2-108 426-519 (520)
33 PRK14104 chaperonin GroEL; Pro 99.9 1E-23 2.2E-28 181.3 11.8 97 5-112 431-527 (546)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 99.9 2E-24 4.4E-29 180.4 7.0 101 2-111 385-485 (485)
35 PLN03167 Chaperonin-60 beta su 99.9 1.1E-23 2.3E-28 182.9 9.7 101 2-113 483-584 (600)
36 KOG0358|consensus 99.9 2.8E-24 6E-29 176.9 5.7 100 2-109 434-533 (534)
37 KOG0362|consensus 99.9 8.5E-23 1.8E-27 171.4 6.8 109 1-118 420-529 (537)
38 KOG0357|consensus 99.9 3.4E-22 7.3E-27 162.0 6.0 101 3-110 296-396 (400)
39 KOG0364|consensus 99.7 2.7E-18 5.8E-23 143.2 4.4 101 3-111 422-522 (527)
40 KOG0359|consensus 99.7 4.4E-17 9.6E-22 135.8 8.7 99 4-112 419-517 (520)
41 KOG0360|consensus 99.7 1.2E-17 2.6E-22 140.2 4.6 116 2-117 428-543 (545)
42 KOG0356|consensus 99.2 1.2E-11 2.6E-16 105.6 6.0 93 8-114 449-541 (550)
43 PRK04027 30S ribosomal protein 61.3 17 0.00037 28.0 4.4 33 7-43 74-106 (195)
44 PTZ00091 40S ribosomal protein 61.0 17 0.00037 28.0 4.3 33 7-43 72-104 (193)
45 PF07278 DUF1441: Protein of u 61.0 13 0.00027 27.6 3.5 28 12-39 101-128 (152)
46 TIGR01028 S7_S5_E_A ribosomal 55.4 27 0.00059 26.7 4.6 33 7-43 65-97 (186)
47 COG0049 RpsG Ribosomal protein 54.4 31 0.00067 25.5 4.6 33 7-43 32-64 (148)
48 PF09999 DUF2240: Uncharacteri 41.1 32 0.00069 25.2 2.9 30 18-47 84-113 (144)
49 KOG3291|consensus 39.0 66 0.0014 25.1 4.5 33 6-42 88-120 (208)
50 PF07818 HCNGP: HCNGP-like pro 33.9 80 0.0017 21.4 3.8 59 24-101 30-88 (96)
51 CHL00053 rps7 ribosomal protei 31.8 1.1E+02 0.0023 22.4 4.5 35 6-44 32-66 (155)
52 TIGR01029 rpsG_bact ribosomal 30.5 1.2E+02 0.0026 22.2 4.5 33 7-43 31-63 (154)
53 PRK05302 30S ribosomal protein 24.8 1.6E+02 0.0035 21.5 4.4 34 7-44 33-66 (156)
54 PF01756 ACOX: Acyl-CoA oxidas 22.6 71 0.0015 23.6 2.1 60 30-106 71-130 (187)
No 1
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.95 E-value=5.4e-28 Score=206.36 Aligned_cols=110 Identities=76% Similarity=1.084 Sum_probs=97.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++++++++|++||++||++||+|||+|+.+++.+|++.|.++..+..+.+.+++|||+.+|++.||++.||||
T Consensus 418 ~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~d 497 (527)
T cd03335 418 FATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLE 497 (527)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhcccee
Confidence 56778999999999999999999999999999999999999999997753111111235799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDP 111 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~ 111 (130)
|+.||+++|++|+|+|+||||||++|+.+|
T Consensus 498 p~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 498 PTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 999999999999999999999999998765
No 2
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.95 E-value=7.5e-28 Score=205.44 Aligned_cols=104 Identities=39% Similarity=0.544 Sum_probs=97.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++++++++|++||++||++||+|||+|+.+++.+|++.|+++ ..++|||+.+|.+.||++.||||
T Consensus 415 ~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~--------~~~~Gid~~~g~i~d~~~~gI~d 486 (519)
T TIGR02341 415 EAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNG--------NHTMGLDMEEGEIADMRKLGIIE 486 (519)
T ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--------CCccceecCCCcccchhhccceE
Confidence 5677899999999999999999999999999999999999999999764 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPEQ 113 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~ 113 (130)
|+.||+++|++|+|+|++|||||++|+.+|++
T Consensus 487 p~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 518 (519)
T TIGR02341 487 SYKVKRAVVSSAAEAAEVILRVDNIIKAAPRA 518 (519)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCC
Confidence 99999999999999999999999999998843
No 3
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.95 E-value=8.6e-28 Score=204.85 Aligned_cols=103 Identities=41% Similarity=0.541 Sum_probs=97.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++++++++|++||++||++||+|||+|+.+++.+|+..|.++ +.++|||+.+|.+.||++.||||
T Consensus 414 ~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~--------~~~~Gid~~~g~~~d~~~~gI~d 485 (517)
T cd03336 414 LAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNG--------NTTAGLDMRKGTVGDMKELGITE 485 (517)
T ss_pred HhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CCceeeecCCCCccchhhcCcee
Confidence 5677899999999999999999999999999999999999999999765 36799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPE 112 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~ 112 (130)
|+.||+++|++|+|+|++|||||++|+.+|+
T Consensus 486 p~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 516 (517)
T cd03336 486 SFKVKRQVLLSASEAAEMILRVDDIIKCAPR 516 (517)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence 9999999999999999999999999998763
No 4
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.95 E-value=1.6e-27 Score=203.97 Aligned_cols=113 Identities=74% Similarity=1.054 Sum_probs=100.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|++++++++++++++|++||++||++||+|||+|+.+++.+|++.|.++..+.++.+..++|||+.+|.+.||++.||||
T Consensus 422 ~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D 501 (536)
T TIGR02340 422 FATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLE 501 (536)
T ss_pred HhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhcccee
Confidence 45678899999999999999999999999999999999999999998764222222335799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPEQQ 114 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~ 114 (130)
|+.||+++|++|+|+|++|||||++|+.+|.+.
T Consensus 502 p~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~~ 534 (536)
T TIGR02340 502 PAVSKVKSLKFATEAAITILRIDDLIKLNPEQS 534 (536)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC
Confidence 999999999999999999999999999887543
No 5
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.95 E-value=9.9e-28 Score=205.17 Aligned_cols=103 Identities=41% Similarity=0.571 Sum_probs=96.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++++++++|++||++||++||+|||+|+.+++.+|+..|.++ +.++|+|+.+|++.||++.||||
T Consensus 426 ~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~--------~~~~G~d~~~g~i~d~~~~gI~d 497 (533)
T PTZ00212 426 LAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKG--------NKTAGIDMEKGTVGDMKELGITE 497 (533)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CCccceeccCCcccchhhcccee
Confidence 4667899999999999999999999999999999999999999999765 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPE 112 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~ 112 (130)
|+.||+++|++|+|+|++|||||++|+..|.
T Consensus 498 p~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 528 (533)
T PTZ00212 498 SYKVKLSQLCSATEAAEMILRVDDIIRCAPR 528 (533)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHhhhcCCc
Confidence 9999999999999999999999999998753
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.95 E-value=1.1e-27 Score=204.94 Aligned_cols=103 Identities=30% Similarity=0.418 Sum_probs=96.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++|+++++|++||++||++||+|||+|+.+++.+|++.|.++ +.++|+|+.+|.+.||++.||||
T Consensus 426 ~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~--------~~~~Gid~~~g~~~d~~~~gV~D 497 (531)
T TIGR02347 426 EKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEG--------GEVVGVDLETGEPIDPEIKGIWD 497 (531)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc--------CCceeeeccCCCccchhhccCEE
Confidence 5667899999999999999999999999999999999999999998764 25789999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPE 112 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~ 112 (130)
|+.||+++|++|+++|++|||||+||+.+|.
T Consensus 498 p~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 498 NYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 9999999999999999999999999998765
No 7
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.95 E-value=1.8e-27 Score=201.60 Aligned_cols=101 Identities=31% Similarity=0.412 Sum_probs=95.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++|+++++|++||++||++||+|||+|+.+++.+|+..|+++ ..++|||+.+|++.||++.||||
T Consensus 383 ~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~--------~~~~Gid~~~g~~~d~~~~gI~d 454 (484)
T cd03342 383 FKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEG--------GQVGGVDLDTGEPMDPESEGIWD 454 (484)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc--------CCceeeeCCCCcccchhhcCcEE
Confidence 5677899999999999999999999999999999999999999998764 25789999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLD 110 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~ 110 (130)
|+.||+++|++|+|+|++|||||+||+.+
T Consensus 455 p~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 455 NYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999999999999999999999864
No 8
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.94 E-value=2.7e-27 Score=201.87 Aligned_cols=103 Identities=32% Similarity=0.390 Sum_probs=96.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++|+++++|++||++||++||+|||+|+.+++.+|+..|+++. +.++|+|+.+|.+.||++.||||
T Consensus 421 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-------~~~~Gid~~~g~~~d~~~~gV~d 493 (525)
T TIGR02344 421 KASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEG-------NCTWGIDGETGKIVDMKEKGIWE 493 (525)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-------CCeEeEECCCCccccchhcccee
Confidence 46778999999999999999999999999999999999999999997641 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDP 111 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~ 111 (130)
|+.||+++|++|+|+|++|||||++|.+.|
T Consensus 494 p~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 494 PLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 999999999999999999999999998876
No 9
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.94 E-value=1.9e-27 Score=202.68 Aligned_cols=100 Identities=31% Similarity=0.500 Sum_probs=94.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++|+++++|++||++||++||+|||+|+.+++.+|+..|+++ +.++|+|+.+|.+.||++.||||
T Consensus 417 ~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~--------~~~~Gid~~~g~i~d~~~~gI~d 488 (517)
T TIGR02342 417 LARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANG--------EKYAGISVRKGGITDMLEEEVLQ 488 (517)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--------CCccceecCCCCccchhhccceE
Confidence 5677899999999999999999999999999999999999999999764 36899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKL 109 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~ 109 (130)
|+.||+++|++|+++|++|||||+||+.
T Consensus 489 p~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 489 PLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 9999999999999999999999999975
No 10
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.94 E-value=4.4e-27 Score=200.47 Aligned_cols=103 Identities=40% Similarity=0.584 Sum_probs=95.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|++++.|++++++++|++||++||++||+|||+|+.+++.+|++.|+++. ..++|||+.+|.+.||++.||||
T Consensus 419 ~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-------~~~~Gid~~~g~i~d~~~~gV~d 491 (522)
T cd03340 419 YSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGG-------GKWYGVDINNEGIADNFEAFVWE 491 (522)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-------CCeeeeeCCCCcccchhhcCceE
Confidence 45678899999999999999999999999999999999999999997642 14799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDP 111 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~ 111 (130)
|+.||+++|++|+|+|++|||||++|++++
T Consensus 492 p~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 492 PSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 999999999999999999999999998753
No 11
>KOG0361|consensus
Probab=99.94 E-value=3.6e-27 Score=194.14 Aligned_cols=106 Identities=37% Similarity=0.554 Sum_probs=100.9
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCcc
Q psy14916 1 MFGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVL 80 (130)
Q Consensus 1 ~~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~ 80 (130)
+|++++.|++|+-+.+|++|||+|||+||+|+|+|.++++.+||.+|++|+ .|||||+.++.+.|+++.+||
T Consensus 422 d~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~--------~w~Gvdi~~e~i~dn~~~~Vw 493 (543)
T KOG0361|consen 422 DYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGE--------KWYGVDINTEGIADNFEKFVW 493 (543)
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCC--------ceeeeeecccchhhHHHhhcc
Confidence 478999999999999999999999999999999999999999999999874 899999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCC
Q psy14916 81 EPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQ 114 (130)
Q Consensus 81 dp~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~ 114 (130)
||..||++++..|+|+|++||.||+.|+..+++.
T Consensus 494 EP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~ 527 (543)
T KOG0361|consen 494 EPSIVKINAITAATEAACLILSVDETIKNPKSQS 527 (543)
T ss_pred ChHHHHHHHHHHHHHhhhheEehhhhhcCCcccC
Confidence 9999999999999999999999999999876544
No 12
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.94 E-value=1.1e-26 Score=198.86 Aligned_cols=106 Identities=34% Similarity=0.534 Sum_probs=97.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCc--eeccccCCc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGV--VRDNKKAGV 79 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~--i~d~~~~gI 79 (130)
|+++++|++++++++|++||++||++||+|||+|+.+++.+|+..|+++ +.++|||+.+|. +.||++.||
T Consensus 418 ~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~--------~~~~Gid~~~~~~~i~d~~~~gI 489 (531)
T TIGR02346 418 YANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKG--------NTSSGIDIEAESDGVKDASEAGI 489 (531)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CCccceeeeCCCccccChhhcCc
Confidence 4567889999999999999999999999999999999999999998654 257899999999 599999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCC
Q psy14916 80 LEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQG 115 (130)
Q Consensus 80 ~dp~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~~ 115 (130)
|||+.||+++|++|+|+|++|||||++|+.+|...+
T Consensus 490 ~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~ 525 (531)
T TIGR02346 490 YDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGP 525 (531)
T ss_pred eEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCC
Confidence 999999999999999999999999999998765443
No 13
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.94 E-value=7.7e-27 Score=197.50 Aligned_cols=100 Identities=33% Similarity=0.432 Sum_probs=94.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++|+++++|++||++||++||+|||+|+.+++.+|++.|.++. ..++|||+.+|++.||++.||||
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-------~~~~Gid~~~g~i~d~~~~gV~d 452 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGE-------NSTWGIDGETGDIVDMKELGIWD 452 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC-------CCeECeeccCCCcccchhccCeE
Confidence 56788999999999999999999999999999999999999999997652 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIK 108 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~ 108 (130)
|+.||+++|++|+|+|++|||||++|+
T Consensus 453 p~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 453 PLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 999999999999999999999999985
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.94 E-value=1.3e-26 Score=197.79 Aligned_cols=101 Identities=39% Similarity=0.547 Sum_probs=94.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+.+..|++++++++|++||++||++||+|||+|+.+++.+|++.|+.+ +.++|||+.+|++.||++.||||
T Consensus 420 ~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~--------~~~~G~d~~~~~i~d~~~~gI~d 491 (522)
T TIGR02345 420 HSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKG--------GKWYGVDINTEDIGDNFENFVWE 491 (522)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--------CCccceeCCCCcccchhhcCceE
Confidence 4567889999999999999999999999999999999999999998764 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLD 110 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~ 110 (130)
|+.||+++|++|+|+|++|||||++|+++
T Consensus 492 p~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 492 PLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 99999999999999999999999999874
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.94 E-value=1.2e-26 Score=197.45 Aligned_cols=100 Identities=31% Similarity=0.493 Sum_probs=94.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+.+++|++|+++++|++||+.||++||+|||+|+.+++.+|+..|+++ +.++|+|+.+|.+.||++.||||
T Consensus 416 ~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~--------~~~~G~d~~~g~~~d~~~~gI~d 487 (515)
T cd03338 416 WARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQG--------EKNAGINVRKGAITNILEENVVQ 487 (515)
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc--------CCccceeccCCCccchhhcCcee
Confidence 4567889999999999999999999999999999999999999999764 36899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKL 109 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~ 109 (130)
|+.||+++|++|+++|++|||||+||++
T Consensus 488 p~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 488 PLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 9999999999999999999999999974
No 16
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.94 E-value=1.7e-26 Score=196.52 Aligned_cols=101 Identities=46% Similarity=0.605 Sum_probs=94.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+++++|++++++++|++||+.||++||+|||+|+.+++.+|++.|.++ +.++|+|+.+|.+.||++.||||
T Consensus 417 ~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~--------~~~~G~d~~~g~~~d~~~~gI~d 488 (517)
T cd03343 417 YARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKG--------NKNAGLDVYTGEVVDMLEKGVIE 488 (517)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc--------CCceeeecCCCCccchhhcCcee
Confidence 4567899999999999999999999999999999999999999998654 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLD 110 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~ 110 (130)
|+.||+++|++|+|+|++|||||++|+.+
T Consensus 489 p~~vk~~~l~~A~e~a~~iL~id~ii~~~ 517 (517)
T cd03343 489 PLRVKKQAIKSATEAATMILRIDDVIAAK 517 (517)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence 99999999999999999999999999753
No 17
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.94 E-value=1.2e-26 Score=198.03 Aligned_cols=100 Identities=29% Similarity=0.384 Sum_probs=93.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|++++++++++++++|++||++||++||+|||+|+.+++.+|+..|.++. ..++|||+.+|.+.||++.||||
T Consensus 427 ~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~-------~~~~Gid~~~g~~~d~~~~gV~d 499 (526)
T cd03339 427 AADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEK-------NPHLGIDCLGRGTNDMKEQKVFE 499 (526)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcC-------CCeEeeecCCCccCchhhcCcee
Confidence 56678999999999999999999999999999999999999999996531 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIK 108 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~ 108 (130)
|+.||+++|++|+|+|++|||||++|+
T Consensus 500 p~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 500 TLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 999999999999999999999999874
No 18
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.93 E-value=2.6e-26 Score=195.65 Aligned_cols=100 Identities=43% Similarity=0.603 Sum_probs=93.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
+++++++++++++++|++||++||++||+|||+|+.+++.+|++.|+++ +.++|+|+.+|++.||++.||||
T Consensus 420 ~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~--------~~~~Gid~~~g~~~d~~~~gI~d 491 (519)
T TIGR02339 420 YARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKG--------NKNAGINVFTGEIEDMLELGVIE 491 (519)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc--------CCceeEEcCCCCccchhhccceE
Confidence 4567889999999999999999999999999999999999999998754 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKL 109 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~ 109 (130)
|+.||+++|++|+|+|++|||||++|++
T Consensus 492 p~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 492 PLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 9999999999999999999999999863
No 19
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.93 E-value=2e-26 Score=194.59 Aligned_cols=100 Identities=39% Similarity=0.594 Sum_probs=93.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCC--ceeccccCCc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEG--VVRDNKKAGV 79 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g--~i~d~~~~gI 79 (130)
|++++.+++++++++|++||++||++||+|||+|+.+++.+|+..|+++ +.++|||+.+| ++.||++.||
T Consensus 370 ~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~--------~~~~Gid~~~g~~~~~d~~~~gI 441 (472)
T cd03341 370 YGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKG--------NKSAGVDIESGDEGTKDAKEAGI 441 (472)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc--------CCeeeeeccCCCCCccChhhccc
Confidence 4567789999999999999999999999999999999999999998764 25799999999 9999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy14916 80 LEPAMSKIKSLKFATEAAITILRIDDMIKL 109 (130)
Q Consensus 80 ~dp~~vK~~~i~~A~e~a~~iLrID~iI~~ 109 (130)
|||+.||+++|++|+|+|++|||||++|+.
T Consensus 442 ~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 442 FDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred eecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 999999999999999999999999999865
No 20
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.93 E-value=6.7e-26 Score=194.61 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=94.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccccH
Q psy14916 4 SNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEPA 83 (130)
Q Consensus 4 ~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp~ 83 (130)
.+++|++|+++++|++||++||++||+|||+|+.+++++|++.| . +++|||+.+|++.||++.|||||+
T Consensus 429 ~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~-~----------~~~G~d~~~g~~~d~~~~gI~Dp~ 497 (542)
T PRK00013 429 KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK-G----------KGYGYNAATGEYVDMIEAGIIDPT 497 (542)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C----------CCEeEeCCCCceeehhhccCeecH
Confidence 56799999999999999999999999999999999999999887 1 579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcCCCCC
Q psy14916 84 MSKIKSLKFATEAAITILRIDDMIKLDPEQQ 114 (130)
Q Consensus 84 ~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~ 114 (130)
.||+++|+.|+++|++||+||++|+.+|...
T Consensus 498 ~vk~~al~~A~~~a~~iL~id~iI~~~~~~~ 528 (542)
T PRK00013 498 KVTRSALQNAASVAGLLLTTEAVVADKPEKK 528 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999887543
No 21
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.93 E-value=8.1e-26 Score=194.06 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=96.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+.. ++++|+++++|++||++||++||+|||+|+.+++++|++.|. +++|||+.+|++.||++.||||
T Consensus 429 ~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~-----------~~~G~d~~~g~~~d~~~~GI~D 496 (545)
T PRK12852 429 INND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKS-----------ETFGFDAQTEEYVDMVAKGIID 496 (545)
T ss_pred hhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcC-----------CCeeEeCcCCCcccHHhCcCCc
Confidence 4445 789999999999999999999999999999999999988762 5799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCcc
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGGRSYK 120 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~~~~~~~ 120 (130)
|+.||+++|++|+++|++|||||++|+.+|.......++
T Consensus 497 p~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~ 535 (545)
T PRK12852 497 PAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMP 535 (545)
T ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCC
Confidence 999999999999999999999999999887654433333
No 22
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.93 E-value=7.3e-26 Score=194.38 Aligned_cols=99 Identities=23% Similarity=0.316 Sum_probs=93.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+ +++|++|+++++|++||++||++||+|||+|+.+++++|++.| .++|||+.+|++.||.+.||||
T Consensus 428 ~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~------------~~~G~d~~~g~~~d~~~~GV~D 494 (542)
T PRK12849 428 LA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE------------DGFGFNAATGEYGDLIAAGIID 494 (542)
T ss_pred hh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC------------CCcceeCCCCccccHHhccCcc
Confidence 45 7899999999999999999999999999999999999998875 4699999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPEQ 113 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~ 113 (130)
|+.||.++|++|+++|++|||||++|+.+|..
T Consensus 495 p~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 526 (542)
T PRK12849 495 PVKVTRSALQNAASVAGLLLTTEALVADKPEE 526 (542)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence 99999999999999999999999999988743
No 23
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.93 E-value=5.5e-26 Score=194.50 Aligned_cols=101 Identities=31% Similarity=0.416 Sum_probs=94.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+.+++|++|+++++|++||++||++||+|||+|+.+++.+|++.|+.+. ..++|+|+.+|.+.||++.||||
T Consensus 431 ~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~-------~~~~Gid~~~g~i~d~~~~gV~D 503 (532)
T TIGR02343 431 EADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEK-------NPHLGVDCLGDGTNDMKEQGVFE 503 (532)
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcC-------CCccCeeCCCCccccchhccCee
Confidence 56778999999999999999999999999999999999999999986531 25799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKL 109 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~ 109 (130)
|+.||+++|+.|+|+|++|||||++|..
T Consensus 504 p~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 504 TLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 9999999999999999999999999964
No 24
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.93 E-value=1.3e-25 Score=192.82 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=93.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+.. +|++++++++|++||++||++||+|||+|+.+++.+|++.| .++|+|+.+|++.||.+.||||
T Consensus 429 ~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~------------~~~G~d~~~g~~~d~~~~GIiD 495 (541)
T PRK12851 429 LETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP------------GGYGFNAATNEYGDLYAQGVID 495 (541)
T ss_pred HhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC------------CCeeeeCCCCCccchhhccCEe
Confidence 4444 89999999999999999999999999999999999998875 3689999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPEQQ 114 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~ 114 (130)
|+.||+++|++|+++|++|||||++|+.+|.+.
T Consensus 496 p~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~ 528 (541)
T PRK12851 496 PVKVVRTALQNAASVAGLLLTTEAMVAEKPKKE 528 (541)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCC
Confidence 999999999999999999999999999887543
No 25
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.93 E-value=1.1e-25 Score=193.23 Aligned_cols=98 Identities=22% Similarity=0.299 Sum_probs=93.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccccH
Q psy14916 4 SNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEPA 83 (130)
Q Consensus 4 ~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp~ 83 (130)
.+.+|++|+++++|++||++||++||+|||+|+.+++.+|++.| .++|+|+.+|++.||.+.|||||+
T Consensus 430 ~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~------------~~~G~d~~~g~~~d~~~~gI~Dp~ 497 (544)
T PRK12850 430 KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP------------GNFGFNAQTGEYGDMVEAGIIDPA 497 (544)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC------------CCcceeCCCCcccchhhccCcccH
Confidence 46789999999999999999999999999999999999998875 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy14916 84 MSKIKSLKFATEAAITILRIDDMIKLDPEQ 113 (130)
Q Consensus 84 ~vK~~~i~~A~e~a~~iLrID~iI~~~~~~ 113 (130)
.||+++|++|+++|++|||||++|+.+|.+
T Consensus 498 ~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (544)
T PRK12850 498 KVTRTALQDAASIAALLITTEAMVAEAPKK 527 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Confidence 999999999999999999999999988765
No 26
>CHL00093 groEL chaperonin GroEL
Probab=99.93 E-value=1.8e-25 Score=191.37 Aligned_cols=99 Identities=23% Similarity=0.301 Sum_probs=92.1
Q ss_pred CCC-CcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCcc
Q psy14916 2 FGS-NLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVL 80 (130)
Q Consensus 2 ~a~-~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~ 80 (130)
+++ +++|++|+++++|++||++||++||+|||+|+.+++.+|+... .++|||+.+|++.||++.|||
T Consensus 428 ~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~------------~~~G~d~~~g~~~d~~~~GI~ 495 (529)
T CHL00093 428 WAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQD------------FEIGYNAANNKFVNMYEAGII 495 (529)
T ss_pred HhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHccC------------CCEeEECCCCcccchHhccCE
Confidence 455 7899999999999999999999999999999999999997531 479999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhHHHHhhcCCC
Q psy14916 81 EPAMSKIKSLKFATEAAITILRIDDMIKLDPE 112 (130)
Q Consensus 81 dp~~vK~~~i~~A~e~a~~iLrID~iI~~~~~ 112 (130)
||+.||.++|++|+++|++|||||++|+.+|.
T Consensus 496 Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 496 DPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999998763
No 27
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.92 E-value=2.5e-25 Score=186.86 Aligned_cols=99 Identities=45% Similarity=0.579 Sum_probs=92.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
++++.++++++++++|++||++||++|++|||+|+.+++.+|++.|..+ ..++|+|+.+|++.||.+.||||
T Consensus 366 ~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~--------~~~~g~d~~~~~~~d~~~~gI~d 437 (464)
T cd00309 366 LAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEG--------GGNAGGDVETGEIVDMKEAGIID 437 (464)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcc--------CCCeeEECCCCcEeehhhccCee
Confidence 4566889999999999999999999999999999999999999998654 25789999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIK 108 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~ 108 (130)
|+.||+++|+.|+|+|++|||||++|+
T Consensus 438 p~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 438 PLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999999999999985
No 28
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.92 E-value=1.5e-24 Score=186.55 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=91.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccccHH
Q psy14916 5 NLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEPAM 84 (130)
Q Consensus 5 ~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp~~ 84 (130)
+++|++|+++++|++||++||++||+|||+|+.+++++|++ ++ .+++|||+.+|++.||++.|||||+.
T Consensus 446 ~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~--------~~~~G~d~~~g~~~d~~~~GI~Dp~~ 514 (555)
T PTZ00114 446 ELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KK--------DPSFGYDAQTGEYVNMFEAGIIDPTK 514 (555)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cC--------CCCEeEeCCCCcEeeHHhCCCEeCHH
Confidence 57899999999999999999999999999999999999976 22 26799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy14916 85 SKIKSLKFATEAAITILRIDDMIKLDPEQ 113 (130)
Q Consensus 85 vK~~~i~~A~e~a~~iLrID~iI~~~~~~ 113 (130)
||+++|+.|+++|++||+||++|+..|..
T Consensus 515 vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 515 VVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 99999999999999999999999987754
No 29
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-24 Score=184.91 Aligned_cols=101 Identities=39% Similarity=0.548 Sum_probs=93.3
Q ss_pred CCcch-hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCce-eccccCCccc
Q psy14916 4 SNLNS-REQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVV-RDNKKAGVLE 81 (130)
Q Consensus 4 ~~~~g-~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i-~d~~~~gI~d 81 (130)
.+.+| ++|+++++|++||+.||++||+|||+|+.+++.+|++.|. .+++|||+.++++ .||++.||||
T Consensus 416 ~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~----------~~~~G~d~~~~~~~~dm~~~GI~d 485 (524)
T COG0459 416 MTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA----------TTNYGIDAFTGEYEDDMIEAGIID 485 (524)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc----------CCccceeccCCccccchHhccCcC
Confidence 35556 9999999999999999999999999999999999999874 1469999999999 7799999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPEQQ 114 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~ 114 (130)
|+.||+++|++|+++|.+|||+|++|..+|...
T Consensus 486 P~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 486 PLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999988754
No 30
>KOG0363|consensus
Probab=99.91 E-value=6.4e-25 Score=180.03 Aligned_cols=107 Identities=37% Similarity=0.515 Sum_probs=102.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
+|.+.+|++..++++|++||.++|.+||.|+|+|+.+++++||+.|++| ..++|+|+++|.+.||.+.||+|
T Consensus 419 ~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g--------~~t~Gld~~~G~i~dm~~~Gi~e 490 (527)
T KOG0363|consen 419 EAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNG--------RTTMGLDVRNGEIGDMRELGIVE 490 (527)
T ss_pred HHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcC--------CcccccccccCchhhHHHhhhHH
Confidence 5778999999999999999999999999999999999999999999876 47899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGG 116 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~~~ 116 (130)
++.||++++.+|.|+|.||||+|.||.+.|+.+.+
T Consensus 491 s~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 491 SLKVKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 99999999999999999999999999999998754
No 31
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.91 E-value=5.9e-24 Score=181.87 Aligned_cols=97 Identities=22% Similarity=0.275 Sum_probs=89.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCcccc
Q psy14916 3 GSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEP 82 (130)
Q Consensus 3 a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp 82 (130)
+.+.+|++++++++|++||++||++||+|||+|+.+++++|++. + .++|||+.+|++.||.+.|||||
T Consensus 427 ~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~----------~~~G~d~~~g~~~d~~~~gI~Dp 494 (524)
T TIGR02348 427 LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--K----------GNFGFNAATGEYEDLVEAGIIDP 494 (524)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--C----------CCeeEeCcCCcccchhhccCEEc
Confidence 35678999999999999999999999999999999999999865 2 13899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Q psy14916 83 AMSKIKSLKFATEAAITILRIDDMIKLDP 111 (130)
Q Consensus 83 ~~vK~~~i~~A~e~a~~iLrID~iI~~~~ 111 (130)
+.||+++|++|+++|++|||||++|...|
T Consensus 495 ~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 495 TKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 99999999999999999999999998654
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.90 E-value=4.1e-24 Score=182.74 Aligned_cols=94 Identities=26% Similarity=0.317 Sum_probs=89.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
|+. .+|++|+++++|++||++||++||+|||+|+.+++++|++.| .++|||+.+|++.||.+.||||
T Consensus 426 ~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~------------~~~G~d~~~g~~~d~~~~gV~D 492 (520)
T cd03344 426 LKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP------------DGFGYDAATGEYVDMIEAGIID 492 (520)
T ss_pred hcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc------------CCEeEECCCCcccchHhccCee
Confidence 455 899999999999999999999999999999999999999876 3799999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIK 108 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~ 108 (130)
|+.||.++|+.|+++|++||+||.+|.
T Consensus 493 p~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 493 PTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 999999999999999999999999875
No 33
>PRK14104 chaperonin GroEL; Provisional
Probab=99.90 E-value=1e-23 Score=181.27 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=90.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccccHH
Q psy14916 5 NLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEPAM 84 (130)
Q Consensus 5 ~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp~~ 84 (130)
..++++++|+++|++||++||++||+|||+|+.+++.+|+..| .+++|+|+.+|++.||++.|||||+.
T Consensus 431 ~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-----------~~~~G~d~~~g~~~d~~~~GI~Dp~~ 499 (546)
T PRK14104 431 TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE-----------QYSYGFDSQTGEYGNLVSKGIIDPTK 499 (546)
T ss_pred cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC-----------CCcEeEeCCCCceeehHhcCCEEcHH
Confidence 3579999999999999999999999999999999999998754 25799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcCCC
Q psy14916 85 SKIKSLKFATEAAITILRIDDMIKLDPE 112 (130)
Q Consensus 85 vK~~~i~~A~e~a~~iLrID~iI~~~~~ 112 (130)
||+++|++|+++|++|||||++|..+|.
T Consensus 500 vk~~al~~A~~~a~~iL~id~~I~~~~~ 527 (546)
T PRK14104 500 VVRTAIQNAASVAALLITTEAMVAELPK 527 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999988764
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.90 E-value=2e-24 Score=180.36 Aligned_cols=101 Identities=47% Similarity=0.715 Sum_probs=94.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|+++ .++|+|+.+|++.||.+.||||
T Consensus 385 ~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~---------~~~g~d~~~~~i~~~~~~gi~d 455 (485)
T PF00118_consen 385 YAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNG---------NNYGIDLDTGEIVDMKEAGILD 455 (485)
T ss_dssp HHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST---------TTEEEETTTTEEEETTTTTCEE
T ss_pred hhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccc---------cccCcCccCCceeccccccchh
Confidence 3456788999999999999999999999999999999999999988653 5899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDP 111 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~ 111 (130)
|+.+|+++++.|+|+|++|||||++|+.+|
T Consensus 456 p~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 456 PLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999875
No 35
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=182.88 Aligned_cols=101 Identities=23% Similarity=0.196 Sum_probs=91.0
Q ss_pred CCCCcchhHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCcc
Q psy14916 2 FGSNLNSREQLA-IAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVL 80 (130)
Q Consensus 2 ~a~~~~g~eq~~-i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~ 80 (130)
++.++++++|++ +++|++||++||++||+|||+|+.+++.+|++.+ ++++|||+.+|++.||++.|||
T Consensus 483 ~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~-----------~~~~G~d~~~g~~~dm~~~GI~ 551 (600)
T PLN03167 483 IKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND-----------NPKFGYNAATGKYEDLMAAGII 551 (600)
T ss_pred HHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC-----------CCCEeEeCCCCcCcchHhccCe
Confidence 345677888855 9999999999999999999999999999997432 2579999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy14916 81 EPAMSKIKSLKFATEAAITILRIDDMIKLDPEQ 113 (130)
Q Consensus 81 dp~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~ 113 (130)
||+.||+++|+.|+++|++||+||++|+.+|..
T Consensus 552 Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~ 584 (600)
T PLN03167 552 DPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEP 584 (600)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999987644
No 36
>KOG0358|consensus
Probab=99.90 E-value=2.8e-24 Score=176.90 Aligned_cols=100 Identities=31% Similarity=0.482 Sum_probs=95.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
+|+++.|.++|++++||+|||.||.|||||||++|+.++++||++|.+|+ .++||+++.|.+.||+++.|+.
T Consensus 434 ~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge--------~~aGInVRkg~~tni~ee~VvQ 505 (534)
T KOG0358|consen 434 LARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGE--------KNAGINVRKGGITNILEENVVQ 505 (534)
T ss_pred HHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCC--------cccceeeecccchhhHHHhccc
Confidence 56789999999999999999999999999999999999999999999874 7899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKL 109 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~ 109 (130)
|+.|-.+++.+|+|++.|||+||+|+..
T Consensus 506 PllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 506 PLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred ceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999999999999999864
No 37
>KOG0362|consensus
Probab=99.87 E-value=8.5e-23 Score=171.45 Aligned_cols=109 Identities=36% Similarity=0.480 Sum_probs=100.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCC-ceeccccCCc
Q psy14916 1 MFGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEG-VVRDNKKAGV 79 (130)
Q Consensus 1 ~~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g-~i~d~~~~gI 79 (130)
+|+.+++|..|++++.|++||+.+|++||||+|++..+++++|+..|..+ .+.|+|+..+ .+.|+.++||
T Consensus 420 ~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g---------~~~g~di~~e~~~~d~~~~~i 490 (537)
T KOG0362|consen 420 SRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGG---------KNLGMDIEAEGGTIDVREEGI 490 (537)
T ss_pred HhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCC---------CcceeeeeccccccChhhhch
Confidence 37789999999999999999999999999999999999999999999733 5689888776 5899999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCC
Q psy14916 80 LEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGGRS 118 (130)
Q Consensus 80 ~dp~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~~~~~ 118 (130)
||-+.+|+|+|+.|+++|.++|++|+||+++|+++|...
T Consensus 491 ~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~ 529 (537)
T KOG0362|consen 491 WDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPP 529 (537)
T ss_pred HHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCC
Confidence 999999999999999999999999999999999776543
No 38
>KOG0357|consensus
Probab=99.86 E-value=3.4e-22 Score=162.01 Aligned_cols=101 Identities=29% Similarity=0.372 Sum_probs=93.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCcccc
Q psy14916 3 GSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEP 82 (130)
Q Consensus 3 a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp 82 (130)
|.+++|.+||++++|++||++||..||||+|++|++.+++|++++-+.. +..+|||+.-.+--||++.+|+|+
T Consensus 296 ad~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~-------~~~lGidcl~~G~nDMk~~~vie~ 368 (400)
T KOG0357|consen 296 ADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEM-------NPALGIDCLHKGTNDMKEQHVIET 368 (400)
T ss_pred hccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhc-------CcccCcchhccCchhhhhhccHHH
Confidence 5689999999999999999999999999999999999999999876542 478999998778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q psy14916 83 AMSKIKSLKFATEAAITILRIDDMIKLD 110 (130)
Q Consensus 83 ~~vK~~~i~~A~e~a~~iLrID~iI~~~ 110 (130)
+..|++.|.+||+++.|||+||+|+...
T Consensus 369 l~~KkqQi~laTQ~vrMiLKiddv~~~~ 396 (400)
T KOG0357|consen 369 LIGKKQQISLATQMVRMILKIDDVRKPG 396 (400)
T ss_pred hhhhHHHHHHHHHHHHHhhhccceecCC
Confidence 9999999999999999999999998754
No 39
>KOG0364|consensus
Probab=99.72 E-value=2.7e-18 Score=143.17 Aligned_cols=101 Identities=32% Similarity=0.431 Sum_probs=94.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCcccc
Q psy14916 3 GSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEP 82 (130)
Q Consensus 3 a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp 82 (130)
++...|.++.-+.+.+.||+.|||+|++|+|.+++..++.|+..|..|. ..+|+|.++|.+.||.+.+||+|
T Consensus 422 sa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~--------~~~gi~g~tg~iVDm~~~~iwep 493 (527)
T KOG0364|consen 422 SALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQ--------RVWGIDGETGVIVDMVELGIWEP 493 (527)
T ss_pred HhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcc--------eeecccCceeeEeeeeeccccch
Confidence 4567888999999999999999999999999999999999999998763 67899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Q psy14916 83 AMSKIKSLKFATEAAITILRIDDMIKLDP 111 (130)
Q Consensus 83 ~~vK~~~i~~A~e~a~~iLrID~iI~~~~ 111 (130)
..||.+.++.|.+.++++||||+|+....
T Consensus 494 ~~vK~Q~~ktavesa~~LLRIddIvsg~k 522 (527)
T KOG0364|consen 494 EAVKLQTGKTAVESACLLLRIDDIVSGKK 522 (527)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhceeeeee
Confidence 99999999999999999999999998654
No 40
>KOG0359|consensus
Probab=99.70 E-value=4.4e-17 Score=135.75 Aligned_cols=99 Identities=30% Similarity=0.472 Sum_probs=92.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccccH
Q psy14916 4 SNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEPA 83 (130)
Q Consensus 4 ~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp~ 83 (130)
++++|+.++|+++|++||.+||++|++|+|+|+.+.+.+|.+.|..+ ..|+|+.+|+-.+....||||.+
T Consensus 419 ~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~----------~~g~dl~~g~~~~~~~~gi~Dny 488 (520)
T KOG0359|consen 419 KSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT----------LRGLDLFRGEECDPSRKGIYDNY 488 (520)
T ss_pred hccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh----------hcccccccCCccchhhccccchH
Confidence 56899999999999999999999999999999999999999988653 45999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcCCC
Q psy14916 84 MSKIKSLKFATEAAITILRIDDMIKLDPE 112 (130)
Q Consensus 84 ~vK~~~i~~A~e~a~~iLrID~iI~~~~~ 112 (130)
.||+++|.+++-+|+.||-+|+|+.++..
T Consensus 489 ~v~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 489 SVKKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999988643
No 41
>KOG0360|consensus
Probab=99.69 E-value=1.2e-17 Score=140.18 Aligned_cols=116 Identities=66% Similarity=0.883 Sum_probs=105.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccc
Q psy14916 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLE 81 (130)
Q Consensus 2 ~a~~~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~d 81 (130)
||.+++.++|+++..|+.||.+||++|+-|++.|+.+++++||..|+....+.+.....|+|+|+.+|++.|.++.|+++
T Consensus 428 ~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~e 507 (545)
T KOG0360|consen 428 FATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFE 507 (545)
T ss_pred hcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeec
Confidence 77889999999999999999999999999999999999999999997655444555567999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCC
Q psy14916 82 PAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGGR 117 (130)
Q Consensus 82 p~~vK~~~i~~A~e~a~~iLrID~iI~~~~~~~~~~ 117 (130)
|..+|..+++.|+|.+.+|||||+.|.-.|..+.+.
T Consensus 508 p~~~kvksLk~ateaaitiLriD~li~l~~~~~~~~ 543 (545)
T KOG0360|consen 508 PPIVKVKSLKFATEAAITILRIDDLIKLLPELQVAV 543 (545)
T ss_pred cceeehhhhHHHHHhhhhhcchhhhhhcCccccccC
Confidence 999999999999999999999999999877766554
No 42
>KOG0356|consensus
Probab=99.23 E-value=1.2e-11 Score=105.56 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccccHHHHH
Q psy14916 8 SREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEPAMSKI 87 (130)
Q Consensus 8 g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vK~ 87 (130)
..++.|++++.+||..|-.+||+|||.|+..++.+++. ..+|+|..+++++||++.||+||.+|.+
T Consensus 449 ~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~--------------~~~gyda~~~ey~dlv~~GiidP~kVvr 514 (550)
T KOG0356|consen 449 FDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN--------------DDYGYDAAKGEYVDLVEAGIIDPTKVVR 514 (550)
T ss_pred hHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh--------------hhhhhhhhcccHHHHHhccCCChHHHHH
Confidence 46778899999999999999999999999999999982 1589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcCCCCC
Q psy14916 88 KSLKFATEAAITILRIDDMIKLDPEQQ 114 (130)
Q Consensus 88 ~~i~~A~e~a~~iLrID~iI~~~~~~~ 114 (130)
.++..|..+|+++++.+.+|...|.+.
T Consensus 515 ~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 515 TALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HhhhhhhHHHHHHhhheeEEEeccccc
Confidence 999999999999999999999887654
No 43
>PRK04027 30S ribosomal protein S7P; Reviewed
Probab=61.26 E-value=17 Score=27.99 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy14916 7 NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKL 43 (130)
Q Consensus 7 ~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL 43 (130)
.|+.+++.+++.+||+.|-.. .|.||++++.+-
T Consensus 74 ~GKK~~A~~Iv~~AfeiI~~k----T~~nPiqVl~~A 106 (195)
T PRK04027 74 TGKKQKAYNIVKEAFEIIEKR----TKQNPIQVLVDA 106 (195)
T ss_pred CCcHHHHHHHHHHHHHHHHHH----HCCCHHHHHHHH
Confidence 499999999999999988443 488999998763
No 44
>PTZ00091 40S ribosomal protein S5; Provisional
Probab=61.03 E-value=17 Score=28.01 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy14916 7 NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKL 43 (130)
Q Consensus 7 ~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL 43 (130)
.|+.+++.+++.+||+.|-. ..|.||++++.+-
T Consensus 72 ~GKK~~A~~IV~~AfeiI~~----~t~~nPiqVl~~A 104 (193)
T PTZ00091 72 NGKKLLAVRIVKHAFEIIHL----LTDKNPLQVLVDA 104 (193)
T ss_pred CCcHHHHHHHHHHHHHHHHH----HHCCChHHHHHHH
Confidence 49999999999999999944 3478999998764
No 45
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=61.03 E-value=13 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q psy14916 12 LAIAEFARSLLVIPKTLAVNAAQDSTDL 39 (130)
Q Consensus 12 ~~i~~fa~ALe~IP~~LaeNaG~d~~~v 39 (130)
..++++...|+.+|-+|-+.+|+.|..+
T Consensus 101 ~~~Kav~q~LetlPD~LERd~gL~p~~v 128 (152)
T PF07278_consen 101 EMAKAVVQVLETLPDILERDAGLPPEQV 128 (152)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCCHHHH
Confidence 3588999999999999999999998643
No 46
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic). This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.
Probab=55.45 E-value=27 Score=26.69 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy14916 7 NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKL 43 (130)
Q Consensus 7 ~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL 43 (130)
.|+..++.++|.+||+.|-+. .|.||++++.+-
T Consensus 65 ~GKK~~A~kIv~~A~~iI~~~----t~~nPi~vl~~A 97 (186)
T TIGR01028 65 NGKKLKAYRIVKEAFEIIEKR----TGENPIQVLVDA 97 (186)
T ss_pred CCcHHHHHHHHHHHHHHHHHH----hCCChHHHHHHH
Confidence 599999999999999988543 488999988763
No 47
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=54.41 E-value=31 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy14916 7 NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKL 43 (130)
Q Consensus 7 ~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL 43 (130)
.|+...+..++..||+.|- +-.|.||++++.+-
T Consensus 32 ~GKK~~A~~Ivy~Af~ii~----~kTg~~Piqvf~~A 64 (148)
T COG0049 32 DGKKSLAEKIVYGAFDIIE----KKTGQNPLQVFEKA 64 (148)
T ss_pred hccHHHHHHHHHHHHHHHH----HHHCCChHHHHHHH
Confidence 7899999999999999874 45688999998764
No 48
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=41.06 E-value=32 Score=25.25 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Q psy14916 18 ARSLLVIPKTLAVNAAQDSTDLVAKLRAYH 47 (130)
Q Consensus 18 a~ALe~IP~~LaeNaG~d~~~vl~kL~~~h 47 (130)
...|+.+...|+.+.|++..++++.+...+
T Consensus 84 ~~~fe~ild~ia~~~g~~~~evv~~in~~q 113 (144)
T PF09999_consen 84 RDPFERILDYIAAKTGIEKQEVVAEINELQ 113 (144)
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 567899999999999999999999997765
No 49
>KOG3291|consensus
Probab=39.00 E-value=66 Score=25.08 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy14916 6 LNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAK 42 (130)
Q Consensus 6 ~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~k 42 (130)
-.|+..++..++..||+.|-+.= +.||+.++.+
T Consensus 88 ~~GKK~~a~~Iv~~aleiI~~~t----~~NPiqvl~~ 120 (208)
T KOG3291|consen 88 KNGKKLLARRIVKHALEIIKRLT----ERNPIQVLVQ 120 (208)
T ss_pred hcccHHHHHHHHHHHHHHHHHHh----cCCHHHHHHH
Confidence 36889999999999999996633 8899988865
No 50
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=33.93 E-value=80 Score=21.39 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccccHHHHHHHHHHHHHHHHHHH
Q psy14916 24 IPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITIL 101 (130)
Q Consensus 24 IP~~LaeNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vK~~~i~~A~e~a~~iL 101 (130)
+-..|..|.++.==.++.+|.. ++|||- +.-++...||||.....+.+..+..-+..-.
T Consensus 30 fN~~L~~s~~frNP~i~ekLi~---------------~~~Ide----~gTn~p~~i~dP~~~~~~~y~e~L~k~Qk~~ 88 (96)
T PF07818_consen 30 FNDRLQNSKSFRNPSILEKLIE---------------FFGIDE----YGTNFPKDIFDPHGFPEEDYYEELAKAQKEE 88 (96)
T ss_pred HHHHHHHccccCChHHHHHHHH---------------HcCCCc----ccCCCChhhcCCCCCCHHHHHHHHHHHHHHH
Confidence 4455666666543345556543 467764 4556677899999999999887766555433
No 51
>CHL00053 rps7 ribosomal protein S7
Probab=31.83 E-value=1.1e+02 Score=22.42 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=28.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy14916 6 LNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLR 44 (130)
Q Consensus 6 ~~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~ 44 (130)
..|+...+.++|.+||+.|.+. -+.||++++.+-.
T Consensus 32 ~~GKK~~A~kIv~~al~~i~~~----~~~npi~vl~~Ai 66 (155)
T CHL00053 32 KSGKKSLAYRIVYRALKKIQQK----TEKNPLSVLRQAI 66 (155)
T ss_pred hcccHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHH
Confidence 3689999999999999988654 5789999887643
No 52
>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle. This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028.
Probab=30.50 E-value=1.2e+02 Score=22.20 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy14916 7 NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKL 43 (130)
Q Consensus 7 ~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL 43 (130)
.|+...+.++|.+||+.|-.. .+.||++++.+-
T Consensus 31 ~GKK~~A~kI~~~al~~i~~~----~~~nPi~vl~~A 63 (154)
T TIGR01029 31 DGKKSLAESIVYKAFERIAKK----TGEDPLEVFEQA 63 (154)
T ss_pred cccHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHH
Confidence 689999999999999988544 578999998764
No 53
>PRK05302 30S ribosomal protein S7; Validated
Probab=24.84 E-value=1.6e+02 Score=21.52 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy14916 7 NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLR 44 (130)
Q Consensus 7 ~g~eq~~i~~fa~ALe~IP~~LaeNaG~d~~~vl~kL~ 44 (130)
.|+...+.++|.+||+.|-+. -+.||+.++.+-.
T Consensus 33 ~GKK~~A~kI~~~al~~I~~~----~~~npl~il~~Ai 66 (156)
T PRK05302 33 DGKKSVAEKIVYGALDIIEEK----TGKDPLEVFEKAL 66 (156)
T ss_pred cccHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHH
Confidence 589999999999999988544 5779998887643
No 54
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=22.60 E-value=71 Score=23.57 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=36.8
Q ss_pred HhcCCCHHHHHHHHHHHhhccccccccCCCcceeEEcCCCceeccccCCccccHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14916 30 VNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDM 106 (130)
Q Consensus 30 eNaG~d~~~vl~kL~~~h~~~~~~~~~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vK~~~i~~A~e~a~~iLrID~i 106 (130)
...+-....+|.+|...+ |++.-.....+..+.|.+.|-.++ .|+.++.-.+.-||-+.+
T Consensus 71 ~~~~~~~~~vL~~L~~Ly---------------al~~i~~~~g~fl~~g~ls~~~~~--~l~~~i~~l~~~lrp~av 130 (187)
T PF01756_consen 71 SCADPEVRQVLRQLCQLY---------------ALSIIEENAGDFLEHGYLSPEQIK--ALRKAIEELCAELRPNAV 130 (187)
T ss_dssp G-SSTTHHHHHHHHHHHH---------------HHHHHHHTHHHHHHTTSS-HHHHH--HHHHHHHHHHHHHGGGHH
T ss_pred cCCChHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhCCcCCHHHHH--HHHHHHHHHHHHHHhHHH
Confidence 455566677888876654 333323344566778888776554 677777777777776543
Done!