RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14916
(130 letters)
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 209 bits (534), Expect = 1e-66
Identities = 84/110 (76%), Positives = 96/110 (87%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
F + L SREQLAIAEFA +LLVIPKTLAVNAA+D+T+LVAKLRAYH ++Q K DK LKW
Sbjct: 418 FATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKW 477
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDP 111
GLDL+ G VRDN +AGVLEP +SKIKSLKFATEAAITILRIDD+IKL+P
Sbjct: 478 YGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 197 bits (503), Expect = 5e-62
Identities = 86/115 (74%), Positives = 100/115 (86%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
F + L SREQLAIAEFA +LL+IPKTLAVNAA+DST+LVAKLRAYH ++Q K +K LKW
Sbjct: 422 FATTLGSREQLAIAEFAEALLIIPKTLAVNAAKDSTELVAKLRAYHAAAQLKPEKKHLKW 481
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGG 116
GLDL G +RDNK+AGVLEPA+SK+KSLKFATEAAITILRIDD+IKL+PEQ G
Sbjct: 482 YGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQSKG 536
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 122 bits (308), Expect = 5e-34
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
L +EQL I FA +L VIP+TLA NA D ++V KLRA H
Sbjct: 366 LAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGG--------GN 417
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
G D+ G + D K+AG+++P K ++LK ATEAA IL IDD+I
Sbjct: 418 AGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 103 bits (258), Expect = 6e-27
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ +++ +EQL I FA +L VIP+TLA NA D +++AKL+A H
Sbjct: 381 YAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKKG---------NN 431
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDP 111
+G+D G + D K+AG+++P K +LK A E A IL ID +IK P
Sbjct: 432 LGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQIIKAKP 481
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 99.3 bits (248), Expect = 2e-25
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ ++ REQLA+ FA +L IP+TLA NA D D + +LRA H + K
Sbjct: 417 YARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAH--------EKGNKN 468
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
GLD+ G V D + GV+EP K +++K ATEAA ILRIDD+I
Sbjct: 469 AGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA 515
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 90.0 bits (224), Expect = 3e-22
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 8 SREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLL 67
EQL I FAR+L P+ LA NA D ++++KLR+ H ++ G+D
Sbjct: 421 GDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTN----------YGIDAF 470
Query: 68 EG-VVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQG 115
G D +AG+++P K +LK A EAA +L IDD+I PE++
Sbjct: 471 TGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEKK 519
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 89.4 bits (222), Expect = 6e-22
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ + REQLAI FA +L IP+ LA NA D D + +LRA H K
Sbjct: 420 YARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEK--------GNKN 471
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
G+++ G + D + GV+EP K +++K ATEAA ILRIDD+I
Sbjct: 472 AGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVI 517
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 87.7 bits (218), Expect = 2e-21
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Query: 9 REQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLE 68
++QL I FA++L +IP+ L NA D+TD++ KLR H KW G+D+
Sbjct: 426 KQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQG-------GGKWYGVDINN 478
Query: 69 GVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
+ DN +A V EP++ KI +L ATEAA IL +D+ IK
Sbjct: 479 EGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIK 518
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 87.0 bits (216), Expect = 4e-21
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 9 REQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLE 68
++ LAI FA++L IP +A N DS +LV+KLRA H G+D+ +
Sbjct: 433 KKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKT--------AGIDMEK 484
Query: 69 GVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGGR 117
G V D K+ G+ E K+ L ATEAA ILR+DD+I+ P Q+
Sbjct: 485 GTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQREQV 533
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 85.5 bits (212), Expect = 2e-20
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 9 REQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLE 68
++ LAI FA++L +P +A NA DS +LVA+LRA H + T GLD+ +
Sbjct: 421 KKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTT--------AGLDMRK 472
Query: 69 GVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQ 113
G V D K+ G+ E K + L A+EAA ILR+DD+IK P +
Sbjct: 473 GTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPRK 517
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 81.5 bits (202), Expect = 4e-19
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+G EQ AI +FA + V+P+TLA NA D+T+++++L A H
Sbjct: 370 YGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSA------- 422
Query: 62 VGLDLLEGV--VRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
G+D+ G +D K+AG+ + +K ++K ATEAA+T+LR+D +I
Sbjct: 423 -GVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 76.7 bits (189), Expect = 2e-17
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
Query: 9 REQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLE 68
++QL I FA++L VIP+ L NA DS +++ KLR+ H KW G+D+
Sbjct: 428 KQQLIINAFAKALEVIPRQLCENAGFDSIEILNKLRSAHAK--------GGKWYGVDINT 479
Query: 69 GVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKL 109
+ DN + V EPA+ KI +LK ATEAA TIL +D+ I
Sbjct: 480 EDIGDNFENFVWEPALVKINALKAATEAACTILSVDETITN 520
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 73.6 bits (181), Expect = 2e-16
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 10 EQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEG 69
+Q AI +FA + +IP+TLA NA + +++ KL A H T G+D+
Sbjct: 426 DQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTS--------KGIDIEAE 477
Query: 70 V--VRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDP 111
V+D +AG+ + +K ++K ATEAA+T+LR+D +I P
Sbjct: 478 SDGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQIIMAKP 521
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 69.5 bits (170), Expect = 6e-15
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Query: 4 SNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVG 63
N+ ++ LA+ FAR+L +P LA NA DS++LVA+LRA H + + +G
Sbjct: 416 QNIPGKKALAVEAFARALRQLPTILADNAGFDSSELVAQLRAAHYNGNST--------MG 467
Query: 64 LDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDP 111
LD+ EG + D ++ G++E K + A+EAA +LR+D++IK P
Sbjct: 468 LDMNEGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIKAAP 515
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 66.2 bits (162), Expect = 8e-14
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 3 GSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWV 62
++ EQ A +L VIP+TLA N + + +LRA H +
Sbjct: 381 AKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENS-------TW 433
Query: 63 GLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
G+D G + D K+ G+ +P K ++ K A EAA +LRIDD++
Sbjct: 434 GIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIV 478
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 60.8 bits (148), Expect = 6e-12
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 10 EQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEG 69
EQ A+ FA +L IP LA N+ + + +++++A + +G+D L
Sbjct: 435 EQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPH-------LGIDCLGR 487
Query: 70 VVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
D K+ V E +SK + + AT+ IL+IDD+I
Sbjct: 488 GTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 60.9 bits (148), Expect = 7e-12
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 3 GSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWV 62
S L +Q A +L +IP+TLA N + + +LRA H
Sbjct: 422 ASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNC-------TW 474
Query: 63 GLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
G+D G + D K+ G+ EP K+++ K A E+A +LRIDD++
Sbjct: 475 GIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIV 519
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 58.5 bits (142), Expect = 4e-11
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 6 LNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLD 65
L EQ + FA +L VIP TLA NA + +V +LR H + K G++
Sbjct: 420 LTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGE--------KNAGIN 471
Query: 66 LLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
+ +G + + + V++P + ++ ATE IL+IDD++
Sbjct: 472 VRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 57.5 bits (139), Expect = 1e-10
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 10 EQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEG 69
E + FA +L VIP TLA NA + +V +LR H + + K G+ + +G
Sbjct: 425 ESYCVRAFADALEVIPYTLAENAGLNPIKVVTELRNRHANGE--------KTAGISVRKG 476
Query: 70 VVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
+ + + VL+P + ++ A+E +IL+IDD++
Sbjct: 477 GITNMLEEHVLQPLLVTTSAITLASETVRSILKIDDIV 514
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 54.8 bits (132), Expect = 8e-10
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 10 EQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEG 69
EQ AI FA +L IP LA N+ D ++ L++ + +G+D L
Sbjct: 439 EQYAIRAFADALETIPMALAENSGLDPIGTLSTLKSLQLKEKNPN-------IGVDCLGY 491
Query: 70 VVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
D K+ V E + K + + AT+ IL+IDD+I
Sbjct: 492 GTNDMKEQFVFETLIGKKQQILLATQLVRMILKIDDVIS 530
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 54.0 bits (130), Expect = 1e-09
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 1 MFGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLK 60
++ + +L + FA +LLVIPKTLA N+ D+ D + KL H+ +
Sbjct: 425 ENKKSVKGKAKLGVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGG--------E 476
Query: 61 WVGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
VG+DL G D + G+ + K + ++ AT A +L +D++++
Sbjct: 477 VVGVDLNTGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMR 524
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 49.9 bits (120), Expect = 4e-08
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTD-LVAKLRAYHNSSQTKKDKVDLK 60
F ++ + +L + FA +LLVIPKTLA N+ D + LV Y Q
Sbjct: 383 FKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQV-------- 434
Query: 61 WVGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
G+DL G D + G+ + K + L AT A +L +D++I+
Sbjct: 435 -GGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIR 481
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 27.9 bits (63), Expect = 1.6
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 38 DLVAKLRAYHNSSQTKKDKVDLKW--VGLDLLEGVVRDNKKAGVLEPAMSKI--KSLKFA 93
+LVA+LR + +T+ L+W L L+ ++ +N++ + A+ K A
Sbjct: 2 ELVARLRETFLTGKTR----SLEWRKAQLKALKRMLTENEEE--IAAALYADLGKPPAEA 55
Query: 94 --TEAAITILRIDDMIK 108
TE A+ + ID +K
Sbjct: 56 YLTEIAVVLGEIDHALK 72
>gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide
A dehydrogenase. [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 308
Score = 27.1 bits (60), Expect = 3.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 107 IKLDPEQQGGRSYKNAYDS 125
LDPE+ R Y+ YD+
Sbjct: 189 EVLDPEKDPRRDYRAIYDA 207
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 27.0 bits (61), Expect = 3.1
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 21/103 (20%)
Query: 6 LNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLD 65
LN E+L I R+L + +A NA D + +V K+ + G D
Sbjct: 429 LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPDG------------FGYD 476
Query: 66 LLEGVVRDNKKAGVLEPAM---------SKIKSLKFATEAAIT 99
G D +AG+++P + + SL TEA +
Sbjct: 477 AATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain
is based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding. These enzymes function as monomers.
Archaea, cellular organelles, and some bacteria lack
GlnRS. In these cases, the "non-discriminating" form
of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln)
with Glu, which is converted to Gln when appropriate by
a transamidation enzyme. The discriminating form of
GluRS differs from GlnRS and the non-discriminating
form of GluRS in their C-terminal anti-codon binding
domains.
Length = 230
Score = 25.9 bits (57), Expect = 7.5
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 35 DSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEGVVR 72
+ TD Y + DLKW+GLD EG R
Sbjct: 41 EDTDPERSRPEY-----VESILEDLKWLGLDWDEGPYR 73
>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase.
Length = 667
Score = 26.1 bits (57), Expect = 8.1
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 28 LAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGL-----DLLEGVVR-----DNKKA 77
L N DS DL L Y+ +S +++DL + L L GVVR + +K
Sbjct: 262 LVENTCGDSFDLYYGLFMYNKNSLEMLERLDLAFEALRKQLFGRLHGVVRKQLFGNEEKK 321
Query: 78 GVLEPAMSKIKSLKFATEAAITILRIDD 105
++P ++ + A +++ ++R
Sbjct: 322 VHVQPNHAENHTYGAAFLSSLDMMRFQG 349
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 25.8 bits (57), Expect = 8.3
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 6 LNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLD 65
N+ E I R+L + +A NA + + +V K+ ++ + G +
Sbjct: 432 ANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVA-----------ELPGNF-GFN 479
Query: 66 LLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGGRSYKNAYDS 125
G D +AG+++PA +L+ A A ++ + M+ P++ +
Sbjct: 480 AQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPGM 539
Query: 126 G 126
G
Sbjct: 540 G 540
>gnl|CDD|236347 PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.
Length = 227
Score = 25.3 bits (56), Expect = 9.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 66 LLEGVVRDNKKAGV----LEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQ 114
LL+ +V D G L+ A S + + F EA + +DD+ +LD QQ
Sbjct: 58 LLQALVADASYGGRNARYLDAA-SPLLAFDFDPEA--ELYAVDDVERLDDAQQ 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.357
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,300,749
Number of extensions: 535901
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 40
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)