RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14916
(130 letters)
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 158 bits (401), Expect = 3e-47
Identities = 80/110 (72%), Positives = 95/110 (86%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ +++ SREQLAIAEFARSLLVIP TLAVNAAQDSTDLVAKLRA+HN +Q ++ +LKW
Sbjct: 420 YATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKW 479
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDP 111
+GLDL+ G RDNK+AGV EP + K+KSLKFATEAAITILRIDD+IKL P
Sbjct: 480 IGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 529
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 153 bits (390), Expect = 2e-45
Identities = 68/119 (57%), Positives = 85/119 (71%), Gaps = 4/119 (3%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKK----DKV 57
F + + SREQLAIAEFA +LL+IPKTLAVNAA+DS++LVAKLR+YH +SQ K +
Sbjct: 436 FATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRR 495
Query: 58 DLKWVGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGG 116
+ GLDL+ G + D AGVLEP +SK+KSLK A EA + ILRID MI +DPE
Sbjct: 496 SYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEPPKE 554
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 151 bits (384), Expect = 7e-45
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ S L REQLA+++FA +L VIP LA NA D D++ +LR+ H K
Sbjct: 376 YASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGN--------KN 427
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGG 116
GL++ G V D + V+EP K +++ A EA + ILRIDD++ G
Sbjct: 428 AGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQG 482
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 151 bits (383), Expect = 1e-44
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ + R+QLAI +FA ++ IP+ LA NA D D++ KLRA H K
Sbjct: 423 YAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGN--------KT 474
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGGRSYKN 121
G+++ G + D K GV+EP ++++ ATEAAI ILRIDD+I K+
Sbjct: 475 YGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSNPPKS 534
Query: 122 AYDSGELD 129
S +
Sbjct: 535 GSSSESSE 542
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 150 bits (380), Expect = 4e-44
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ ++ REQLA+ FA +L VIP+TLA NA D+ +++ K+RA H S+ K
Sbjct: 418 YAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNK-------C 470
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGG 116
GL++ G V D + GV+EP K ++++ A E+ +LRIDD+I + +
Sbjct: 471 AGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAP 525
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 149 bits (379), Expect = 6e-44
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ +++ REQLAI FA++L +IP+TLA NA D + + KL+A +
Sbjct: 422 YANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGR--------IS 473
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGGR 117
VG+DL V D K GV++P K +L+ A E A ILRIDD+I
Sbjct: 474 VGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPSG 529
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 149 bits (379), Expect = 6e-44
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ + +EQLA+ +A +L + L NA D DL+ KLR+ H + K W
Sbjct: 432 YAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNK-------W 484
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQG-GRSYK 120
G+DL G D + GV+EPA+ K+ ++K ATEAA +LRIDD++ + G ++
Sbjct: 485 YGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGESKTPG 544
Query: 121 NAYDSGELD 129
A E D
Sbjct: 545 GANKPSEED 553
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 149 bits (379), Expect = 6e-44
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ + ++Q+ I FA++L VIP+ L NA D+ +++ KLR H+ + KW
Sbjct: 427 YSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGE--------KW 478
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGGRSYKN 121
G+ + DN V EPA+ KI +L ATEA IL +D+ I +
Sbjct: 479 YGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESANAGMMP 538
Query: 122 AYDSGE 127
+G
Sbjct: 539 PQGAGR 544
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 148 bits (376), Expect = 2e-43
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ + +E LAI FA +L +IPKTLA NA D+ +++ K+ + H +
Sbjct: 425 YAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRG--------LG 476
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGG 116
+G+D+ EG D + G++EP K +++K A+EAAI ILRIDD+I + G
Sbjct: 477 IGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEG 531
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 148 bits (375), Expect = 2e-43
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
N++ ++ LA+ FAR+L +P LA NA DS++LV+KLR+ +
Sbjct: 418 EAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGI--------ST 469
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQG 115
GLDL G + D ++ G++E K + A+EAA +LR+D++I+ P
Sbjct: 470 SGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTAN 523
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 145 bits (369), Expect = 1e-42
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
S +E +A+ +A++L ++P +A NA DS DLVA+LRA H+ +
Sbjct: 411 LASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGK--------TT 462
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDP 111
GLD+ EG + D G+ E K + L A EAA ILR+D++IK P
Sbjct: 463 AGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 512
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 145 bits (369), Expect = 2e-42
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+G QLAI +FA + V+P+TLA A D +++ L A HN ++ K D +
Sbjct: 437 YGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLY 496
Query: 62 VGLDLL---EGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGG 116
G+D+ + V+D ++ + + +K ++ ATEAA T+L ID +I
Sbjct: 497 KGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGPR 554
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 145 bits (367), Expect = 3e-42
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 4 SNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVG 63
+ + I FA +LLVIPKTL N+ D D++A + + +Q + ++VG
Sbjct: 434 LGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDET---RYVG 490
Query: 64 LDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQGG 116
+DL G D G+ + ++ AT A +L D++++
Sbjct: 491 VDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLKE 543
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 144 bits (365), Expect = 8e-42
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+Q A FA++L IP TLA N+ D ++ L++ + +
Sbjct: 457 EADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEK-------ISN 509
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQ 113
+G+D L D K+ V++P + K + + AT+ IL+ID++I ++
Sbjct: 510 IGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKDE 561
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 143 bits (362), Expect = 1e-41
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ EQ A++L VIP+TL N + L+ LRA H +
Sbjct: 413 KSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE-------T 465
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
G++ G + D K+ G+ EP K+++ K A E A+ +LRIDD++
Sbjct: 466 WGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 512
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 142 bits (361), Expect = 2e-41
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 8/107 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ + ++QL I +A++L +IP+ L NA D+T+++ KLRA H W
Sbjct: 414 YSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--------MW 465
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
G+D+ + DN +A V EPAM +I +L A+EAA I+ +D+ IK
Sbjct: 466 YGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 512
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 142 bits (360), Expect = 2e-41
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ EQ A+ FA +L VIP LA N+ + + ++RA
Sbjct: 414 EADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNP-------A 466
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
+G+D L D K V+E + K + + AT+ IL+IDD+ K
Sbjct: 467 LGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 513
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 142 bits (360), Expect = 2e-41
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ L+ E I FA ++ VIP TLA NA + V +LR H + K
Sbjct: 418 YSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE--------KT 469
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
G+++ +G + + + V++P + + +L ATE +IL+IDD++
Sbjct: 470 TGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 516
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 141 bits (358), Expect = 5e-41
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
++ + EFA +L VIP TLA NA +S +V +LR+ H + +
Sbjct: 428 EARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGE--------LN 479
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
G+ + + + +L+P + ++ A+E +ILRIDD+
Sbjct: 480 DGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAF 526
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 138 bits (351), Expect = 4e-40
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+ ++ R QL + FA +LL+IPK LA N+ D + + K++A H+ S +
Sbjct: 417 YKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESG--------QL 468
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
VG+DL G +AG+ + K + L T A IL +D++++
Sbjct: 469 VGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 515
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 135 bits (343), Expect = 5e-39
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
+G EQ AI +FA + IP+ LA N+ + ++++KL A H K
Sbjct: 410 YGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGN--------KN 461
Query: 62 VGLDLLEGV--VRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
VGLD+ V V+D +AGVL+ + K ++K AT AA+T+LR+D +I
Sbjct: 462 VGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 509
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 129 bits (327), Expect = 2e-36
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 2 FGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW 61
L +Q A ++ IP+TL NA D L+++LRA H
Sbjct: 486 KAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGN--------FT 537
Query: 62 VGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLDPEQQ 114
G+D +G + D G+ EP + K +S+K A E+A +LR+DD++ +Q+
Sbjct: 538 TGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQE 590
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.002
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 45/136 (33%)
Query: 4 SNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTK----KDKVDL 59
S +N + L ++ +SL +N + K +A Q++ + K+
Sbjct: 369 SLVNGAKNLVVSGPPQSL------YGLNLT------LRKAKAPSGLDQSRIPFSERKLKF 416
Query: 60 KWVGL--------DLLEG----VVRDNKKAGVLEPAMSKIKSLK---FATE--------- 95
L LL + +D K V A K ++ + T
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA----KDIQIPVYDTFDGSDLRVLS 472
Query: 96 AAITILRIDDMIKLDP 111
+I+ RI D I P
Sbjct: 473 GSIS-ERIVDCIIRLP 487
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.013
Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 58/159 (36%)
Query: 9 REQLAIAEFARSLLVIP---------------KTLAVNAAQDSTDLVAKLRAYHNSSQ-- 51
R L + LLV+ K L + TD ++ H S
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 52 ----TKKDKVDL--KWVGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAA-------- 97
T + L K++ + L + + + A
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQD-----------LPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 98 ------ITILRIDDMIK-----LDPEQQGGRSYKNAYDS 125
+ ++ +I+ L+P + Y+ +D
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMFDR 377
Score = 26.0 bits (56), Expect = 5.1
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 39/122 (31%)
Query: 14 IAEFARSLL--------VIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLD 65
+ F L + + A NA+ + + +L+ Y
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY------------------- 530
Query: 66 LLEGVVRDNKKAGVLEPAMSKIKS--LKFATEAAITILRID--DMIKLDPEQQGGRSYKN 121
+ + DN +P ++ + L F + ++ D++++ + ++
Sbjct: 531 --KPYICDN------DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 122 AY 123
A+
Sbjct: 583 AH 584
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.11
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 10 EQLAIAEFARSL-LVIPKT---LAVNAA 33
E+ A+ + SL L + LA+ A
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 26.6 bits (59), Expect = 2.9
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 26 KTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKW--VGLDLLEGVVRDNKKAGVLEPA 83
K + + L + +AY + T D+ + L+ L+ V +NK+A L A
Sbjct: 20 KHMNYLSPAKIDSLFSAQKAYFATRATA----DVGFRKQSLERLKEAVINNKEA--LYSA 73
Query: 84 MS----KIKSLKFATEAAITILRIDDMIK 108
++ K K + E + ID +
Sbjct: 74 LAEDLGKPKDVVDLAEIGAVLHEIDFALA 102
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 26.0 bits (58), Expect = 4.9
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 38 DLVAKLRAYHNSSQTKKDKVDLKW--VGLDLLEGVVRDNKKAGVLEPAMS----KIKSLK 91
+ V + RA +S +T+ L++ L+ L+ ++++ ++ L A++ K +
Sbjct: 22 EAVKRARAAFSSGRTR----PLQFRIQQLEALQRLIQEQEQE--LVGALAADLHKNEWNA 75
Query: 92 FATEAAITILRIDDMIK 108
+ E + I+ MI+
Sbjct: 76 YYEEVVYVLEEIEYMIQ 92
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia
with vitamin E deficiency, transport protein; HET: MSE
VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB:
1oiz_A* 1oip_A*
Length = 262
Score = 25.3 bits (56), Expect = 7.0
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 3 GSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRA-YHNSSQTKK 54
GS+++ Q +A R + L+ LRA + +
Sbjct: 1 GSHMSPLLQPGLAAL-RRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWR 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.357
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,856,885
Number of extensions: 100447
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 30
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.7 bits)