RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14916
         (130 letters)



>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
           {Archaeon Thermoplasma acidophilum, beta chain [TaxId:
           2303]}
          Length = 243

 Score = 94.0 bits (233), Expect = 2e-25
 Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 8/107 (7%)

Query: 1   MFGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLK 60
            +   +  R+QLAI +FA ++  IP+ LA NA  D  D++ KLRA H            K
Sbjct: 144 SYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGN--------K 195

Query: 61  WVGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
             G+++  G + D  K GV+EP     ++++ ATEAAI ILRIDD+I
Sbjct: 196 TYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242


>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
           {Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
           2303]}
          Length = 245

 Score = 92.1 bits (228), Expect = 1e-24
 Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 8/107 (7%)

Query: 1   MFGSNLNSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLK 60
            + +++  REQLAI  FA++L +IP+TLA NA  D  + + KL+A     +         
Sbjct: 147 KYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGR--------I 198

Query: 61  WVGLDLLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
            VG+DL    V D K  GV++P   K  +L+ A E A  ILRIDD+I
Sbjct: 199 SVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245


>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
           {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
           79679]}
          Length = 258

 Score = 65.6 bits (159), Expect = 1e-14
 Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 10  EQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDLLEG 69
           E LAI  FA +L +IPKTLA NA  D+ +++ K+ + H +            +G+D+ EG
Sbjct: 165 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRG--------LGIGIDVFEG 216

Query: 70  VVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
              D  + G++EP   K +++K A+EAAI ILRIDD+I
Sbjct: 217 KPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 254


>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
           thermophilus [TaxId: 274]}
          Length = 255

 Score = 56.8 bits (136), Expect = 2e-11
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 7   NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDL 66
              E        R+L    + +A NA  + + +V ++ A   + +           G + 
Sbjct: 161 EGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRY----------GFNA 210

Query: 67  LEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
             G   D  +AG+++PA     +L+ A      IL  + ++
Sbjct: 211 ATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVV 251


>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
           {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 180

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 7   NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDL 66
              E         +L    K +A N+  +   +  K+R                  GL+ 
Sbjct: 95  EGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPA------------GHGLNA 142

Query: 67  LEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITIL 101
             GV  D   AGV +P      +L+ A   A   L
Sbjct: 143 QTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFL 177


>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
           denitrificans [TaxId: 266]}
          Length = 252

 Score = 28.2 bits (62), Expect = 0.27
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 7   NSREQLAIAEFARSLLVIPKTLAVNAAQDSTDLVAKLRAYHNSSQTKKDKVDLKWVGLDL 66
           NS +   IA   R+L    + +A NA  D   +  K+R   +           K  G + 
Sbjct: 159 NSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSD-----------KAFGFNA 207

Query: 67  LEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 107
                 D  K GV++PA     +L+ A   A  ++  + MI
Sbjct: 208 QTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMI 248


>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
           synthase, DHBP synthase, RibB {Magnaporthe grisea
           [TaxId: 148305]}
          Length = 216

 Score = 23.8 bits (51), Expect = 7.4
 Identities = 7/43 (16%), Positives = 17/43 (39%)

Query: 66  LLEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIK 108
           + +G   + +        +   + + FA    + +  I+DMI 
Sbjct: 165 VDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIA 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,474
Number of extensions: 15974
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 9
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.4 bits)