BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14917
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/407 (75%), Positives = 353/407 (86%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
MAA++IANIVKSSLGPVGLDKMLVDDIGDVT+TNDGATIL+LLEVEHPAA+VL ELA LQ
Sbjct: 17 MAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQ 76
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+EVGDGTTSVVI+AAELLKNADELVKQKIHPTSVISGYRLACKEA +YI + L I+ DE
Sbjct: 77 DKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDE 136
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
LG++CLINAAKTSMSSK+IG + +FFA +VVDA AIK T+ G YP+ +IN+LKAHG
Sbjct: 137 LGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHG 196
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+S ES+L+ GYALNC V SQ M K+I NAKIACLDFSLQK KMKLGV+V++ DPEKLD
Sbjct: 197 RSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQ 256
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
IR RESDITKERI KILATGANVIL +GGIDD+CLKYFVEAGAMAVRRV K DLKRIAKA
Sbjct: 257 IRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 316
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
+GA+ L++L+N+EGEE+FEAS LG+A EVVQ ++CDDELILI KART+AS+ILRG ND
Sbjct: 317 SGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGAND 376
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFATT 407
F CDEMERS+HDALCVVKRVLESK++ LSIYLEN+AT+
Sbjct: 377 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATS 423
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 528 bits (1361), Expect = e-150, Method: Compositional matrix adjust.
Identities = 259/409 (63%), Positives = 323/409 (78%), Gaps = 2/409 (0%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A A+AN+VKSSLGPVGLDKMLVDDIGD TVTNDGATIL LL+V+HPA ++LVELAQ Q
Sbjct: 31 LATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQ 90
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D E+GDGTTSVVI+A+ELLK A+ELVK KIHPT++I+G+R+A +EA ++I + L+ SVD
Sbjct: 91 DREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDT 150
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
LGKE LIN AKTSMSSK+IG D +FF+ MVVDA A+K G + YP+KA+N+LKAHG
Sbjct: 151 LGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHG 210
Query: 181 KSARESVLVQGYALNCTVASQAMKKKIT--NAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238
KSA ES+LV GYALNCTVASQAM K+I N KIACLD +LQKA+M +GV++ ++DPE+L
Sbjct: 211 KSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQL 270
Query: 239 DGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIA 298
+ IR RE+ I ER+ KI+ GA V+L + GIDDLCLK FVEA M VRR KK DL+RIA
Sbjct: 271 EQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIA 330
Query: 299 KATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGP 358
+ATGA+ ++S+SN+EGEE+FE+S LG EVVQ + DDE ILI G +++SIILRG
Sbjct: 331 RATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGA 390
Query: 359 NDFYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFATT 407
ND+ DEMERS+HD+L VVKR LES N+ L+IYL+NFATT
Sbjct: 391 NDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATT 439
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 242/405 (59%), Gaps = 8/405 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA IA V+++LGP G+DKMLVD +GD+ VTNDGATIL ++++HPAA+++VE+A+ Q
Sbjct: 30 LAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQ 89
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+E GDGTT+ V++A ELL+ A+EL+ Q IHP+ + GY LA E + I ++ I VD
Sbjct: 90 DKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAA-EKAQEILDEIAIRVDP 148
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E L+ A TS++ K A + V+A + + +K G + I K G
Sbjct: 149 DDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVA-EKKDGKYVVDLDNIKFEKKAG 207
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+ ES LV+G ++ V M K++ NAKIA ++ +L+ K + ++ + P++L
Sbjct: 208 EGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMS 267
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ ++ I TGANV+ V GIDDL Y + G MAVRRVKK D++++AKA
Sbjct: 268 FLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKA 327
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA +T++ ++ E+ LG A V + ++ + +I + G K A +I++RG +
Sbjct: 328 TGAKIVTNVKDLTPED------LGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTE 381
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
DE+ER++ DA+ VVK V+E + L+I L+ +A
Sbjct: 382 HVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 242/405 (59%), Gaps = 8/405 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA IA V+++LGP G+DKMLVD +GD+ VTND ATIL ++++HPAA+++VE+A+ Q
Sbjct: 30 LAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQ 89
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+E GDGTT+ V++A ELL+ A+EL+ Q IHP+ +I GY LA E + I ++ I VD
Sbjct: 90 DKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAA-EKAQEILDEIAIRVDP 148
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E L+ A TS++ K A + V+A + + +K G + I K G
Sbjct: 149 DDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVA-EKKDGKYVVDLDNIKFEKKAG 207
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+ ES LV+G ++ V M K++ NAKIA ++ +L+ K + ++ + P++L
Sbjct: 208 EGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMS 267
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ ++ I TGANV+ V GIDDL Y + G MAVRRVKK D++++AKA
Sbjct: 268 FLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKA 327
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA +T++ ++ E+ LG A V + ++ + +I + G K A +I++RG +
Sbjct: 328 TGAKIVTNVKDLTPED------LGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTE 381
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
DE+ER++ DA+ VVK V+E + L+I L+ +A
Sbjct: 382 HVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/405 (37%), Positives = 241/405 (59%), Gaps = 8/405 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA IA V+++LGP G+DKMLVD +GD+ VTND ATIL ++++HPAA+++VE+A+ Q
Sbjct: 30 LAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQ 89
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+E GDGTT+ V++A ELL+ A+EL+ Q IHP+ + GY LA E + I ++ I VD
Sbjct: 90 DKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAA-EKAQEILDEIAIRVDP 148
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E L+ A TS++ K A + V+A + + +K G + I K G
Sbjct: 149 DDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVA-EKKDGKYVVDLDNIKFEKKAG 207
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+ ES LV+G ++ V M K++ NAKIA ++ +L+ K + ++ + P++L
Sbjct: 208 EGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMS 267
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ ++ I TGANV+ V GIDDL Y + G MAVRRVKK D++++AKA
Sbjct: 268 FLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKA 327
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA +T++ ++ E+ LG A V + ++ + +I + G K A +I++RG +
Sbjct: 328 TGAKIVTNVKDLTPED------LGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTE 381
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
DE+ER++ DA+ VVK V+E + L+I L+ +A
Sbjct: 382 HVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/406 (37%), Positives = 236/406 (58%), Gaps = 10/406 (2%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA AIA+ V+++LGP G+DKMLVD IGD+ ++NDGATIL+ ++VEHP A+++VE+++ QD
Sbjct: 30 AAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQD 89
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
VGDGTT+ V+++ ELLK A+ L+ Q +HPT + +GYRLA EA K I + S D+
Sbjct: 90 TAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDA 149
Query: 122 GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGK 181
L A T++S K G ++F A +VV A A+ + G I + K +G
Sbjct: 150 ---TLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEV-RDGKTIVDTANIKVDKKNGG 205
Query: 182 SARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGI 241
S ++ + G ++ M + NAKIA +D +L+ K ++ +V ++DP K+
Sbjct: 206 SVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDF 265
Query: 242 RARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKAT 301
+E++ K+ + KI +GANV+L GIDD+ Y + G AVRRVKK D++++AKAT
Sbjct: 266 LNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKAT 325
Query: 302 GASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDF 361
GA +T L ++ S LGEA V + ++ DD + + G K A SI++RG D
Sbjct: 326 GAKIVTDLDDL------TPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDH 379
Query: 362 YCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFATT 407
E+ER+++DA+ VV E L++ L +A +
Sbjct: 380 VVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANS 425
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 228/382 (59%), Gaps = 10/382 (2%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA AI+N V+SSLGP G+DKMLVD +GD+ +TNDG TIL+ ++VEHPAA+++VE+++ QD
Sbjct: 29 AAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQD 88
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLT-ISVDE 120
VGDGTT+ VI+A LL+ A L+ Q +HPT + GYR+A +EA + I + T I DE
Sbjct: 89 SFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADE 148
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
K L+ A+TS++SK + A + +A +++ + G I ++K G
Sbjct: 149 --KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVA-ELRDGKYYVDFDNIQVVKKQG 205
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+ ++ L+ G ++ M + +AKIA LD L+ K + + + DP +
Sbjct: 206 GAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQK 265
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
A+E ++ +E ++KI + GANV++ GIDD+ Y AG AVRRVKK D+ ++AKA
Sbjct: 266 FLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKA 325
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGAS ++++ + +S LG A V Q +V +D + + G K A SI++RG +
Sbjct: 326 TGASIVSTI------DEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETE 379
Query: 361 FYCDEMERSIHDALCVVKRVLE 382
DEMERSI D+L VV LE
Sbjct: 380 HVVDEMERSITDSLHVVASALE 401
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 241/383 (62%), Gaps = 12/383 (3%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
A A+ +KS+ GP G+DKMLVD +GD+T+TNDGATIL ++++HPAA++LV++A+ QD
Sbjct: 38 AVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQD 97
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ-QLTISVDE 120
EE DGT + VI + EL+K A++L+ + +HPT +ISGY+ A + A + IQ+ T+S+++
Sbjct: 98 EETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIND 157
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTY-PIKAINLLKAH 179
+ L A TS+SSK + + A +VV A ++ E G+ Y + I ++K
Sbjct: 158 T--DLLRKIAMTSLSSKAVAGAREYIADIVVKA--VTQVAELRGDKWYVDLDNIQIVKKA 213
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
G S ++ LV G ++ V M K++ NAKIA +D SL+ K +L E+ +NDP ++
Sbjct: 214 GGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQ 273
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAK 299
E ++ KE+++KILATGANVI+ GID++ Y + G +AVRR KK DL+++A+
Sbjct: 274 KFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLAR 333
Query: 300 ATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPN 359
ATG ++++ + ++ LG A+ + + +V +D+++ + G K + SI++RG
Sbjct: 334 ATGGRVVSNIDEISEQD------LGYASLIEERKVGEDKMVFVEGAKNPKSISILIRGGL 387
Query: 360 DFYCDEMERSIHDALCVVKRVLE 382
+ DE ER++ DAL V V++
Sbjct: 388 ERLVDETERALRDALGTVADVIK 410
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 254 bits (648), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 149/405 (36%), Positives = 240/405 (59%), Gaps = 11/405 (2%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 26 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 85
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 86 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 144
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A + + G V + I + K G
Sbjct: 145 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA--VVDDEGKVDKDL--IKIEKKSG 200
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ +++ + + E+ + DP KL
Sbjct: 201 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 260
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 261 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 320
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ +T++ ++ A LG+A V + ++ D +I + K A ++++RG +
Sbjct: 321 TGANVITNIKDL------SAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 374
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
+E+ R++ DA+ VV +E + LS+ L +A
Sbjct: 375 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 419
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 253 bits (647), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 149/405 (36%), Positives = 240/405 (59%), Gaps = 11/405 (2%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 20 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 79
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 80 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 138
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A + + G V + I + K G
Sbjct: 139 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA--VVDDEGKVDKDL--IKIEKKSG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ +++ + + E+ + DP KL
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 254
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 255 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 314
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ +T++ ++ A LG+A V + ++ D +I + K A ++++RG +
Sbjct: 315 TGANVITNIKDL------SAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 368
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
+E+ R++ DA+ VV +E + LS+ L +A
Sbjct: 369 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 413
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 239/405 (59%), Gaps = 11/405 (2%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 26 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 85
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 86 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 144
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A + + G V + I + K G
Sbjct: 145 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA--VVDDEGKVDKDL--IKIEKKSG 200
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ +++ + + E+ + DP KL
Sbjct: 201 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 260
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 261 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 320
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ + +++ + A LG+A V + ++ D +I + K A ++++RG +
Sbjct: 321 TGANVIAAIA------ALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 374
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
+E+ R++ DA+ VV +E + LS+ L +A
Sbjct: 375 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 419
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 239/405 (59%), Gaps = 11/405 (2%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 20 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 79
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 80 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 138
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A + + G V + I + K G
Sbjct: 139 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA--VVDDEGKVDKDL--IKIEKKSG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ +++ + + E+ + DP KL
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 254
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 255 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 314
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ + +++ + A LG+A V + ++ D +I + K A ++++RG +
Sbjct: 315 TGANVIAAIA------ALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 368
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
+E+ R++ DA+ VV +E + LS+ L +A
Sbjct: 369 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 413
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 232/405 (57%), Gaps = 33/405 (8%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 26 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 85
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 86 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 144
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A + + G V + I + K G
Sbjct: 145 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA--VVDDEGKVDKDL--IKIEKKSG 200
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ ++++
Sbjct: 201 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETA----------------- 243
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
S++ K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 244 -----SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 298
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ +T++ ++ A LG+A V + ++ D +I + K A ++++RG +
Sbjct: 299 TGANVITNIKDL------SAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 352
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
+E+ R++ DA+ VV +E + LS+ L +A
Sbjct: 353 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 397
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 232/405 (57%), Gaps = 33/405 (8%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 20 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 79
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 80 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 138
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A + + G V + I + K G
Sbjct: 139 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA--VVDDEGKVDKDL--IKIEKKSG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ ++++
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETA----------------- 237
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
S++ K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 238 -----SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 292
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ +T++ ++ A LG+A V + ++ D +I + K A ++++RG +
Sbjct: 293 TGANVITNIKDL------SAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 346
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
+E+ R++ DA+ VV +E + LS+ L +A
Sbjct: 347 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 231/405 (57%), Gaps = 33/405 (8%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 20 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 79
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 80 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 138
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A + + G V + I + K G
Sbjct: 139 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA--VVDDEGKVDKDL--IKIEKKSG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ ++++
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETA----------------- 237
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
S++ K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 238 -----SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 292
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ + +++ + A LG+A V + ++ D +I + K A ++++RG +
Sbjct: 293 TGANVIAAIA------ALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 346
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
+E+ R++ DA+ VV +E + LS+ L +A
Sbjct: 347 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 231/405 (57%), Gaps = 33/405 (8%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 20 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 79
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 80 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 138
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A + + G V + I + K G
Sbjct: 139 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA--VVDDEGKVDKDL--IKIEKKSG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ ++++
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETA----------------- 237
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
S++ K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 238 -----SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 292
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ +T++ ++ A LG+A V + ++ D +I + K A ++++RG +
Sbjct: 293 TGANVITNIKDL------SAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 346
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFA 405
+E+ R++ A+ VV +E + LS+ L +A
Sbjct: 347 HVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/414 (35%), Positives = 223/414 (53%), Gaps = 23/414 (5%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
A IA V+++LGP G+DK++VD G T++NDGATIL+LL+V HPAA+ LV++A+ QD
Sbjct: 19 ACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQD 78
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
EVGDGTTSV ++AAE LK V++ +HP +I +R A + A I +++ ++V +
Sbjct: 79 AEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKI-KEIAVTVKKE 137
Query: 122 GK----ECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLK 177
K + L A T++SSKLI FFA MVVDA + + +K I + K
Sbjct: 138 DKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML-------DDLLQLKMIGIKK 190
Query: 178 AHGKSARESVLVQGYALNCTVASQAMK---KKITNAKIACLDFSLQKAKMKLGVEVLVND 234
G + ES LV G A T + + KK N IA L+ L+ K E+ V+
Sbjct: 191 VQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHT 250
Query: 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDL 294
E I E +I +++ KI +GA V+L I D+ +YF + RV + DL
Sbjct: 251 VEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 310
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILING-PKARTAASI 353
KR A G S TS++ + + LG +TQ+ + G PKA+T +I
Sbjct: 311 KRTMMACGGSIQTSVN------ALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKT-CTI 363
Query: 354 ILRGPNDFYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFATT 407
ILRG + + +E ERS+HDA+ +V+R +++ ++ LS YL +++ T
Sbjct: 364 ILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRT 417
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/386 (32%), Positives = 217/386 (56%), Gaps = 7/386 (1%)
Query: 22 MLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKN 81
MLVD +GD+ +TNDGATIL+ ++++HPAA+++VE+++ QD EVGDGTT+ +++ ELL
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 82 ADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGP 141
A+EL+ + +H T + GYR A E C+ I + +TI++ + LI A T+++ K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAA-EKCREILETITIAISPDDEAALIKIAGTAITGKGAEA 119
Query: 142 DDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQ 201
+ + V A ++I E+ G ++ I + K G S +S L+ G ++ +
Sbjct: 120 YKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHP 179
Query: 202 AMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGA 261
M +K+ NAKI L ++ K ++ E+ + P ++ +E + +E K++A+GA
Sbjct: 180 NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGA 239
Query: 262 NVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEAS 321
NV+ GIDD+ Y +AG AVRRVKK DLKR++K TGA+ + L + E+
Sbjct: 240 NVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTED----- 294
Query: 322 SLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVL 381
+G A V + +V ++ + G + A +++L G + D ++ +++DAL VV V+
Sbjct: 295 -VGTAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVI 353
Query: 382 ESKNLXXXXXXXXXXLSIYLENFATT 407
E + LS+ L +A+T
Sbjct: 354 EDGKVVVGGGSSEVELSLRLSEYAST 379
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 217/387 (56%), Gaps = 18/387 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
MAA A+AN +K+SLGP GLDKM+VD GDVTVTNDGATIL +++V+H A+++VEL++ Q
Sbjct: 17 MAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQ 76
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ-QLTISVD 119
D+E+GDGTT VV++A LL+ A++L+ + IHP + GY A + A +++ + ++ VD
Sbjct: 77 DDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVD 136
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
E LI AKT++ SK++ A + V+A + ++ +V + L+K
Sbjct: 137 MKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRR-DVDF-----ELIKVE 190
Query: 180 GKSA---RESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPE 236
GK ++ L++G ++ + M K++ +AKIA L + K K ++ V E
Sbjct: 191 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVE 250
Query: 237 KLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKR 296
++ E + +E I +I TGAN+ + G DD ++ AVR V +++
Sbjct: 251 DFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIEL 310
Query: 297 IAKATGASFLTSLSNMEGEESFEASSLGEAAEV--VQTQVCDDELILINGPKARTAASII 354
IA ATG + S + E+ LG A V + D++++I K A +I
Sbjct: 311 IAIATGGRIVPRFSELTAEK------LGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIF 364
Query: 355 LRGPNDFYCDEMERSIHDALCVVKRVL 381
+RG N +E +RS+HDALCV++ ++
Sbjct: 365 IRGGNKMIIEEAKRSLHDALCVIRNLI 391
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 213/381 (55%), Gaps = 8/381 (2%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA IA+I+++ LGP + KML+D +G + +TNDG ILR ++V+HPAA+ ++E+++ QD
Sbjct: 17 AAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQD 76
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
EEVGDGTTSV+I+A E+L A+ ++Q++HPT VIS YR A + + ++++I VD
Sbjct: 77 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTL-KKISIPVDTS 135
Query: 122 GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAI-NLLKAHG 180
++ ++N +S+++K+I + + +DA + ++ E++G IK + K G
Sbjct: 136 NRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQF-EENGRKEIDIKKYARVEKIPG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+S +++G +N V M++ I N +I LD SL+ K + ++ + E
Sbjct: 195 GIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTR 254
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
I E + ++ I+ +V++ GI DL Y + A A+RRV+K D RIA+A
Sbjct: 255 ILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARA 314
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
GA ++ + E+ + L E ++ D+ I K A +I+LRG +
Sbjct: 315 CGARIVSRPEELREEDVGTGAGLLEIK-----KIGDEYFTFITECKDPKACTILLRGASK 369
Query: 361 FYCDEMERSIHDALCVVKRVL 381
E+ER++ DA+ V + VL
Sbjct: 370 EILSEVERNLQDAMQVCRNVL 390
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 204 bits (520), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 230/414 (55%), Gaps = 19/414 (4%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA A+A+ +++SLGP G+DKM+ D GDVT+TNDGATIL+ ++V HPAAR+LVEL++ QD
Sbjct: 19 AAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQD 78
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
E GDGTTSVVI+A LL + +L+++ IHPT + ++ A ++ + I ++ V+
Sbjct: 79 IEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE-ILTDMSRPVELS 137
Query: 122 GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGK 181
+E L+N+A TS++SK++ + + M VDA +K+ + + + ++ I ++K G
Sbjct: 138 DRETLLNSAATSLNSKVVSQYSSLLSPMSVDA--VMKVIDPATATSVDLRDIKIVKKLGG 195
Query: 182 SARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGI 241
+ + LV+G L VA+ + ++ AKI + F L K + +++V+D ++D +
Sbjct: 196 TIDDCELVEGLVLTQKVANSGI-TRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRV 254
Query: 242 RARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVDLKR 296
E + +I TG NV+L+ I DL L + + M V+ +++ D++
Sbjct: 255 LREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEF 314
Query: 297 IAKATGASFLTSLSNMEGEESFEASSLGEA--AEVVQTQVCDDELILING-PKARTAASI 353
I K G + + + F A LG A AE V +LI I G +I
Sbjct: 315 ICKTIGTKPVAHV------DQFTADMLGSAELAEEVSLN-GSGKLIKITGCASPGKTVTI 367
Query: 354 ILRGPNDFYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFATT 407
++RG N +E ERSIHDALCV++ +++ + L L++ L ++ T
Sbjct: 368 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRT 421
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/415 (33%), Positives = 218/415 (52%), Gaps = 25/415 (6%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
A A+ +K +LGP+G D ++V T++NDGATIL+LL+V HPAA+ LV++++ QD
Sbjct: 32 ACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQD 91
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD-- 119
EVGDGTTSV I+A EL+K A +++ I ++ GYR A A + I + ++VD
Sbjct: 92 AEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINE---LAVDIT 148
Query: 120 ---ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLL 176
G+E L A+T+MSSKLI + +FF M VDA ++ + K I +
Sbjct: 149 SEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDD------KLIGIK 202
Query: 177 KAHGKSARESVLVQGYALNCTVASQAMK---KKITNAKIACLDFSLQKAKMKLGVEVLVN 233
K G + ES+ + G A T + + KK N KI L+ L+ K EV V
Sbjct: 203 KIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVE 262
Query: 234 DPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVD 293
E I E + E++ ++ TGAN++L I DL ++F + RV D
Sbjct: 263 HVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADD 322
Query: 294 LKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILING-PKARTAAS 352
+ R+ +A G S ++ S+++ E LG A + Q+ + L G P+A+T +
Sbjct: 323 MNRVIQAVGGSIQSTTSDIKPEH------LGTCALFEEMQIGSERYNLFQGCPQAKT-CT 375
Query: 353 IILRGPNDFYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFATT 407
++LRG + E+ERS+HDA+ +VKR L++K + +S L +++ T
Sbjct: 376 LLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKT 430
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 225/391 (57%), Gaps = 27/391 (6%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVT--VTNDGATILRLLEVEHPAARVLVELAQ 58
+ A AI ++VKS+LGP G+DK+L+ D + VTNDGATIL+ + V++PAA+VLV++++
Sbjct: 17 IGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSR 76
Query: 59 LQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISV 118
+QD+EVGDGTTSV ++AAELL+ A+ L+ +KIHP ++I+G+R EA K +Q L S
Sbjct: 77 VQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWR----EATKAARQALLNSA 132
Query: 119 DELG------KECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKA 172
+ G ++ L+N A T++SSKL+ + F + V+A +K SGN ++A
Sbjct: 133 VDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLK---GSGN----LEA 185
Query: 173 INLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVL 231
I+++K G S +S L +G+ L+ + K+I NAKI + + K+K+ G V
Sbjct: 186 IHVIKKLGGSLADSYLDEGFLLDKKIGVN-QPKRIENAKILIANTGMDTDKIKIFGSRVR 244
Query: 232 VNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKK 291
V+ K+ I E + KE++ +IL G N + I + + F AG MA+
Sbjct: 245 VDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADF 304
Query: 292 VDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAA 351
V ++R+A TG ++ + E LG + + + +D+LI +G A
Sbjct: 305 VGVERLALVTGGEIASTFDHP------ELVKLGSCKLIEEVMIGEDKLIHFSGVALGEAC 358
Query: 352 SIILRGPNDFYCDEMERSIHDALCVVKRVLE 382
+I+LRG DE ERS+HDALCV+ + ++
Sbjct: 359 TIVLRGATQQILDEAERSLHDALCVLAQTVK 389
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 222/397 (55%), Gaps = 28/397 (7%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA ++A+I+K+SLGP GLDK+L+ G++T+TNDGATIL +E+++ A++LV+L++ Q
Sbjct: 52 LAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQ 111
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ---QLTIS 117
D+E+GDGTT VV++A+ LL A EL+++ IHP + +G+ A K A +++ ++ S
Sbjct: 112 DDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISAS 171
Query: 118 VDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKS-GNVTYPIKAINLL 176
DEL ++ L+ AAKTS+ SK++ D + FA M V+A I + +K +V + +L+
Sbjct: 172 NDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEA--VINVMDKDRKDVDF-----DLI 224
Query: 177 KAHGK---SARESVLVQGYALNCTVASQAMKKKI------TNAKIACLDFSLQKAKMKLG 227
K G+ S +S L+ G L+ + M K + K+A L + K K
Sbjct: 225 KMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTK 284
Query: 228 VEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVR 287
++ ++ E+ ++ E D KE I+ + GA+V++ G DD ++ AVR
Sbjct: 285 HKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVR 344
Query: 288 RVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQ--VCDDELILINGP 345
V +L+ IA +T + ++ ++ LG + + + + D +++I
Sbjct: 345 WVGGQELEHIAISTNGRIVPRFQDLSKDK------LGTCSRIYEQEFGTTKDRMLIIEQS 398
Query: 346 KARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLE 382
K + +RG N DE ER++HD+LCVV+ +++
Sbjct: 399 KETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVK 435
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 25/388 (6%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDV-TVTNDGATILRLLEVEHPAARVLVELAQL 59
+ A A+ ++VKS+LGP G+DK+L + VTNDGATIL+ + +++PAA+VLV ++++
Sbjct: 24 VGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKV 83
Query: 60 QDEEVGDGTTSVVIVAAELLKNADELVKQ-KIHPTSVISGYRLACKEACKYIQQQLTISV 118
QD+EVGDGTTSV +++AELL+ A++L+ Q KIHP ++I GYRLA A + + +V
Sbjct: 84 QDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKA---AV 140
Query: 119 DE-----LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAI 173
D + +E LI+ AKT++SSK++ D + FA + +A +K S N+ + I
Sbjct: 141 DNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLK---GSTNLEH----I 193
Query: 174 NLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVLV 232
++K G +S L +G+ L + K+I NAKI + +L K+K+ G + V
Sbjct: 194 QIIKILGGKLSDSFLDEGFILAKKFGNN-QPKRIENAKILIANTTLDTDKVKIFGTKFKV 252
Query: 233 NDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKV 292
+ KL + E + K +I KI G N + I D + F + G ++
Sbjct: 253 DSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFE 312
Query: 293 DLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAAS 352
++R+A TG +++ + LGE + + + + + +G KA A +
Sbjct: 313 GVERLALVTGGEVVSTF------DEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACT 366
Query: 353 IILRGPNDFYCDEMERSIHDALCVVKRV 380
I+LRG D DE ERS+HDAL V+ +
Sbjct: 367 IVLRGATDQTLDEAERSLHDALSVLSQT 394
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 211/396 (53%), Gaps = 21/396 (5%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA ++A+ +++SLGP G+DKM+ G++ ++NDG TIL+ + + HP AR+LVE++ Q
Sbjct: 26 IAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQ 85
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D E GDGTTSVVI+ LL A+ L+ + IHPT + ++ A K + I ++ V
Sbjct: 86 DSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVD-ILLEMCHKVSL 144
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT-EKSGNVTYPIKAINLLKAH 179
+E L+ AA TS+SSK++ +F A + VD+ +KI+ E S NV + I L+K
Sbjct: 145 SDREQLVRAASTSLSSKIVSQYSSFLAPLAVDS--VLKISDENSKNVD--LNDIRLVKKV 200
Query: 180 GKSARESVLVQGYALNCT-VASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238
G + ++ ++ G L T + S + AKI + F + K ++VND ++
Sbjct: 201 GGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQM 260
Query: 239 DGIRARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVD 293
D I E KI NV+L+ I +DL L + + M V+ +++ +
Sbjct: 261 DKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREE 320
Query: 294 LKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPK---ARTA 350
++ ++K G + + E F L A V + +++ + G + AR
Sbjct: 321 IEFLSKGLGCKPIADI------ELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPT 374
Query: 351 ASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNL 386
S+++RG N+ DE ERS+HDALCV++ +++ + L
Sbjct: 375 VSVVIRGANNMIIDETERSLHDALCVIRCLVKERGL 410
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 207/395 (52%), Gaps = 31/395 (7%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA + ++++++LGP G KMLV GD+ +T DG +L ++++HP A ++ ++A QD
Sbjct: 18 AARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQD 77
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTTS V++ ELLK AD + + +HP + G+ A ++A +++ +Q+ +S E+
Sbjct: 78 DITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFL-EQVKVS-KEM 135
Query: 122 GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIK--AINLLKAH 179
+E LI+ A+TS+ +K+ + VVD+ AIK ++ PI + +++
Sbjct: 136 DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDE------PIDLFMVEIMEMK 189
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
KS ++ L++G L+ MKK++ +A I + SL+ K ++ E+ +
Sbjct: 190 HKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEERE 249
Query: 240 GIRARESDITKERINKIL---------ATGANVILVSGGIDDLCLKYFVEAGAMAVRRVK 290
+ E ++R+ KI+ + V++ GID L + G +A+RR K
Sbjct: 250 KLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAK 309
Query: 291 KVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILI---NGPKA 347
+ +++R+ A G L SL ++ + LG A V + + +++ I N P++
Sbjct: 310 RRNMERLTLACGGIALNSLDDLNPD-----CLLGHAG-VYEYTLGEEKFTFIEKCNNPRS 363
Query: 348 RTAASIILRGPNDFYCDEMERSIHDALCVVKRVLE 382
T ++++GPN +++ +I D L VK ++
Sbjct: 364 VT---LLIKGPNKHTLTQIKDAIRDGLRAVKNAID 395
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 179/344 (52%), Gaps = 14/344 (4%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA A+A+++++ LGP + KML+D +G + +TNDG ILR ++V HPAA+ ++EL++ QD
Sbjct: 27 AAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQD 86
Query: 62 EEVGDGTTSVVIVAAELLKN-ADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
EEVGDGTT+V+I+A E+L A L+++ IHP +I + A +A + I +Q++ VD
Sbjct: 87 EEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVI-KQVSKPVDV 145
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIK-----ITEKSGNVTYPIKA-IN 174
+ + S+ +K + + +DA + ++ E N IK +
Sbjct: 146 ENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVR 205
Query: 175 LLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVND 234
+ K G +S +++G LN V M + I N ++ LD L+ K + + +
Sbjct: 206 VEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEK 265
Query: 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDL 294
E + I E + + +ILA +++ G+ DL Y ++ G +RRVKK D
Sbjct: 266 EEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDN 325
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDE 338
RIA+ TGA+ + + E + S +G + + ++ DE
Sbjct: 326 NRIARVTGATIVNRV------EDLKESDVGTNCGLFKVEMIGDE 363
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 350 AASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYL 401
A +I+LRG + +E++R++ DA+ V + V+ S +L +S+ L
Sbjct: 432 ACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKL 483
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 199/392 (50%), Gaps = 25/392 (6%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
A +A +++ GP G++KM+++ + + VTND ATILR LEV+HPAA+++V + +Q+
Sbjct: 19 ACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQE 78
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTIS---- 117
+EVGDGT V++ A LL+ A+EL++ + + VI GY +ACK+A + + + S
Sbjct: 79 QEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNL 138
Query: 118 --VDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINL 175
VDE+ + TS+ SK G ++ F A ++ A + I SG+ + + I +
Sbjct: 139 RDVDEVS-----SLLHTSVMSKQYG-NEVFLAKLIAQA--CVSIFPDSGH--FNVDNIRV 188
Query: 176 LKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDP 235
K G S ++ G ++ + +AKIA + VL+
Sbjct: 189 CKILGSGVHSSSVLHGMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSA 246
Query: 236 EKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLK 295
E+L E ++ ++ I TGANV++ G + D+ L Y + M VR K DL+
Sbjct: 247 EELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLR 306
Query: 296 RIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTA-ASII 354
R+ K GA+ L L+ EE +G V ++V D ++++ K A ++I+
Sbjct: 307 RLCKTVGATALPRLNPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIV 360
Query: 355 LRGPNDFYCDEMERSIHDALCVVKRVLESKNL 386
LRG D D++ER++ D + K + K L
Sbjct: 361 LRGSTDNLMDDIERAVDDGVNTFKVLTRDKRL 392
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/414 (23%), Positives = 199/414 (48%), Gaps = 22/414 (5%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
+A + ++++++LGP G KMLVD G++ +T DG +L ++++ P A ++ A QD
Sbjct: 25 SAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQD 84
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
E GDGTT+VV + ELL+ A +++ +HP + G+ +A KE+ K++ + IS L
Sbjct: 85 EITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFL-DEFKISKTNL 143
Query: 122 G--KECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
+E L+ A++S+ +K+ +V DA ++ ++ N+ + + +++
Sbjct: 144 SNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSV-YDAQADNLD--LHMVEIMQMQ 200
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
S +++ ++G L+ M ++ NA + L+ SL+ K ++ + ++ D
Sbjct: 201 HLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRD 260
Query: 240 GIRARESDITKERINKIL----------ATGANVILVSGGIDDLCLKYFVEAGAMAVRRV 289
+ A E ++ KI+ VI+ GID + L F + +A+RR
Sbjct: 261 KLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRA 320
Query: 290 KKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART 349
K+ +++R+ TG S+ E LG + V Q + +++ +
Sbjct: 321 KRRNMERLQLVTGGEAQNSV------EDLSPQILGFSGLVYQETIGEEKFTYVTENTDPK 374
Query: 350 AASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLEN 403
+ +I+++G + + + ++ D L V VL+ KN+ LS YL +
Sbjct: 375 SCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRS 428
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 194/382 (50%), Gaps = 23/382 (6%)
Query: 12 SSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSV 71
+S+GP G +K++V+ +G + +TND AT+LR L++ HPA +VLV + Q ++GDGT V
Sbjct: 44 TSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLV 103
Query: 72 VIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISV-DELGKECLINAA 130
+I+A ELL +++L+ + +I GY +A K K + + + + D+ K L+
Sbjct: 104 MILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMI 163
Query: 131 KTSMSSKLIGPDDNFFATMVVDA-AQAIKITEKSGNVTY-PIKAINLLKAHGKSARESVL 188
K +SSK G +D + +V +A + + + +++G + Y + +I ++K G S S +
Sbjct: 164 KPVISSKKYGSED-ILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTV 222
Query: 189 VQGYALN----CTVASQAMKKKITNAKIAC-LDFSLQKAKMKLGVEVLVNDPEKLDGIRA 243
++G N V S + KK A C LD + + K G +L N E LD +
Sbjct: 223 IKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETK---GTVLLHNAQEMLDFSKG 279
Query: 244 RESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGA 303
E I + +I G I+ G+ +L L Y G + ++ K +L+R+ + GA
Sbjct: 280 EEKQIDA-MMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGA 338
Query: 304 SFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILI---NGPKARTAASIILRGPND 360
+ L L EE LG V ++ D + + G +RT ++IILRG
Sbjct: 339 TPLPRLGAPTPEE------LGLVETVKTMEIGGDRVTVFKQEQGEISRT-STIILRGATQ 391
Query: 361 FYCDEMERSIHDALCVVKRVLE 382
D++ER+I D + VK +++
Sbjct: 392 NNLDDIERAIDDGVAAVKGLMK 413
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 207 ITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILV 266
+ NAKIA +D +L+ K ++ +V ++DP K+ +E++ K+ + KI +GANV+L
Sbjct: 19 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLC 78
Query: 267 SGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEA 326
GIDD+ Y + G AVRRVKK D++++AKATGA +T L ++ S LGEA
Sbjct: 79 QKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDL------TPSVLGEA 132
Query: 327 AEVVQTQVCDDELILINGPK 346
V + ++ DD + + G K
Sbjct: 133 ETVEERKIGDDRMTFVMGCK 152
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 202 AMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGA 261
M + +AKIA LD L+ K + + + DP + A+E ++ +E ++KI + GA
Sbjct: 14 GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGA 73
Query: 262 NVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEAS 321
NV++ GIDD+ Y AG AVRRVKK D+ ++AKATGAS ++++ + +S
Sbjct: 74 NVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI------DEISSS 127
Query: 322 SLGEAAEVVQTQVCDDELILINGPK 346
LG A V Q +V +D + + G K
Sbjct: 128 DLGTAERVEQVKVGEDYMTFVTGSK 152
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 185 ESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRAR 244
+S +++G +N V M++ I N +I LD SL+ K + ++ + E I
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62
Query: 245 ESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGAS 304
E + + I+ +V++ GI DL Y + A A+RRV+K D RIA+A GA
Sbjct: 63 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122
Query: 305 FLTSLSNMEGEESFEASSLGEAAEVVQ-TQVCDDELILINGPKARTAASIILRG 357
++ E +G A +++ ++ D+ I K A +I+LRG
Sbjct: 123 IVSR------PEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 170
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 4 SAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQL 59
+A+A+ VK +LGP G + +L G T+TNDG +I + +E+E P A ++ E+A+
Sbjct: 20 NALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKK 79
Query: 60 QDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD 119
D+ GDGTT+ ++A L++ V +P G + ++A + + + L
Sbjct: 80 TDDVAGDGTTTATVLAQALVREGLRNVAAGANPL----GLKRGIEKAVEKVTETLLKGAK 135
Query: 120 EL-GKECLINAAKTSMSSKLIG 140
E+ KE + A S + IG
Sbjct: 136 EVETKEQIAATAAISAGDQSIG 157
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 4 SAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLE----VEHPAARVLVELAQL 59
+A+AN VK +LGP G + +L G T+T DG T+ + +E +E+ A++L E+A
Sbjct: 20 NAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASK 79
Query: 60 QDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD 119
++ GDGTT+ ++A +++ + V +P ++ G A + A + I + L I V+
Sbjct: 80 TNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKI-KALAIPVE 138
Query: 120 E 120
+
Sbjct: 139 D 139
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T++V+EL
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTVAVEEL 130
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T++V+EL
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTVAVEEL 130
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T++V+EL
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTVAVEEL 131
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T++V+EL
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTVAVEEL 130
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T++V+EL
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTVAVEEL 130
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T++V+EL
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTVAVEEL 130
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T++V+EL
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTVAVEEL 130
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + ++ G +T DG ++ + +E+ E+ A+++ E+A +
Sbjct: 23 LADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTN 82
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQ 111
+E GDGTT+ ++A +++ + V ++P + G +A + + I+
Sbjct: 83 DEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIK 132
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T +V+EL
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTAAVEEL 131
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T +V+EL
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTAAVEEL 130
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQ 111
+ GDGTT+ ++A ++ + V ++P + G A A + ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELK 131
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQ 111
+ GDGTT+ ++A ++ + V ++P + G A A + ++
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELK 132
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTT+ ++A ++ + V ++P + G I + +T +V+EL
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG-----------IDKAVTAAVEEL 130
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQ 111
+ GDGTT+ ++A ++ + V ++P + G A A + ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELK 131
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+A+ VK +LGP G + +L G T+T DG ++ R +E+ E+ A+++ E+A +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQ 111
+ GDGTT+ ++A ++ + V ++P + G A A + ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELK 131
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 28 GDVTVTNDGATILRLLEVEHP----AARVLVELAQLQDEEVGDGTTSVVIVAAELLKNAD 83
G T+TNDG +I + +E+E P A ++ E+A+ D+ GDGTT+ ++A L++
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 84 ELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL-GKECLINAAKTSMSSKLIG 140
V +P G + ++A + + + L E+ KE + A S + IG
Sbjct: 62 RNVAAGANPL----GLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIG 115
>pdb|3C9R|A Chain A, Aathil Complexed With Atp
pdb|3C9R|B Chain B, Aathil Complexed With Atp
pdb|3C9S|A Chain A, Aathil Complexed With Amppcp
pdb|3C9S|B Chain B, Aathil Complexed With Amppcp
pdb|3C9T|A Chain A, Aathil Complexed With Amppcp And Tmp
pdb|3C9T|B Chain B, Aathil Complexed With Amppcp And Tmp
pdb|3C9U|A Chain A, Aathil Complexed With Adp And Tpp
pdb|3C9U|B Chain B, Aathil Complexed With Adp And Tpp
Length = 342
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 109 YIQQQLTISVDELGKECLINAAKTSMSSKLIGPD 142
Y Q T+ + ELG+ LI+ K ++ SK+IG D
Sbjct: 30 YFQGSFTMRLKELGEFGLIDLIKKTLESKVIGDD 63
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1
Length = 350
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 246 SDITKERINKILATGANVILVSGGIDDLCLKYFVE----AGAMAVRRVKKVDLKRIAKAT 301
+++ +ER+ +I + A+V+++SG D+ VE GAM+ +K + L+
Sbjct: 257 NNVDRERVRQIKFSAADVVMLSGSKDNQTSADAVEDGQNTGAMSHAFIKVMTLQ-----P 311
Query: 302 GASFLTSLSNMEGE 315
S+L+ L NM E
Sbjct: 312 QQSYLSLLQNMRKE 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,777,797
Number of Sequences: 62578
Number of extensions: 346371
Number of successful extensions: 1167
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 67
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)