Query psy14917
Match_columns 407
No_of_seqs 127 out of 1645
Neff 8.6
Searched_HMMs 46136
Date Sat Aug 17 00:15:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02339 thermosome_arch ther 100.0 2.1E-89 4.6E-94 701.1 48.2 399 1-406 23-422 (519)
2 cd03335 TCP1_alpha TCP-1 (CTT 100.0 9.9E-89 2.1E-93 696.8 48.2 405 1-406 15-420 (527)
3 TIGR02344 chap_CCT_gamma T-com 100.0 7.6E-89 1.6E-93 697.9 45.2 399 1-406 23-423 (525)
4 cd03343 cpn60 cpn60 chaperonin 100.0 9E-88 1.9E-92 689.7 47.5 398 1-406 22-419 (517)
5 TIGR02343 chap_CCT_epsi T-comp 100.0 8.5E-88 1.8E-92 688.9 47.2 396 1-406 34-433 (532)
6 TIGR02347 chap_CCT_zeta T-comp 100.0 1.9E-87 4.1E-92 684.9 48.9 395 1-406 23-428 (531)
7 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.4E-87 3E-92 688.2 47.6 396 1-406 30-429 (526)
8 KOG0361|consensus 100.0 2.8E-89 6.1E-94 630.5 28.8 393 1-407 27-426 (543)
9 TIGR02342 chap_CCT_delta T-com 100.0 4.9E-87 1.1E-91 682.2 48.2 397 1-406 16-419 (517)
10 TIGR02340 chap_CCT_alpha T-com 100.0 7E-87 1.5E-91 683.9 48.7 406 1-406 19-424 (536)
11 cd03340 TCP1_eta TCP-1 (CTT or 100.0 8.6E-87 1.9E-91 682.2 48.5 392 1-406 23-421 (522)
12 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.1E-86 8.9E-91 675.4 48.8 391 1-406 20-416 (517)
13 cd03338 TCP1_delta TCP-1 (CTT 100.0 4.1E-86 8.8E-91 676.7 47.1 397 1-406 15-418 (515)
14 PTZ00212 T-complex protein 1 s 100.0 6.3E-86 1.4E-90 675.8 48.2 391 1-406 29-428 (533)
15 TIGR02345 chap_CCT_eta T-compl 100.0 3.6E-85 7.8E-90 669.2 46.1 392 1-406 25-422 (522)
16 TIGR02341 chap_CCT_beta T-comp 100.0 2.2E-84 4.7E-89 661.9 47.8 391 1-406 21-417 (519)
17 TIGR02346 chap_CCT_theta T-com 100.0 2.4E-84 5.1E-89 663.3 48.2 393 1-406 25-420 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 4.9E-83 1.1E-87 647.4 44.3 366 1-406 19-385 (484)
19 KOG0358|consensus 100.0 3.5E-84 7.7E-89 595.8 25.2 398 1-407 33-437 (534)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3.5E-82 7.5E-87 641.1 41.0 358 1-406 23-382 (480)
21 KOG0360|consensus 100.0 1.3E-82 2.7E-87 600.2 26.9 406 1-407 26-431 (545)
22 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 4E-79 8.8E-84 624.0 44.3 385 6-406 1-387 (485)
23 cd03341 TCP1_theta TCP-1 (CTT 100.0 9.5E-79 2.1E-83 614.8 43.0 355 1-406 15-372 (472)
24 cd00309 chaperonin_type_I_II c 100.0 9.3E-79 2E-83 616.0 42.9 354 1-406 15-368 (464)
25 KOG0363|consensus 100.0 4.7E-79 1E-83 559.4 27.8 390 2-406 26-421 (527)
26 COG0459 GroL Chaperonin GroEL 100.0 1.8E-77 3.8E-82 603.4 39.6 387 2-404 19-414 (524)
27 KOG0364|consensus 100.0 7E-79 1.5E-83 569.8 22.2 396 1-406 26-423 (527)
28 KOG0362|consensus 100.0 8.3E-72 1.8E-76 530.3 37.4 388 1-406 33-423 (537)
29 PRK12849 groEL chaperonin GroE 100.0 2.4E-70 5.1E-75 558.6 41.8 349 2-405 18-429 (542)
30 cd03344 GroEL GroEL_like type 100.0 7.3E-70 1.6E-74 553.7 41.3 351 1-406 15-428 (520)
31 PRK00013 groEL chaperonin GroE 100.0 7.4E-70 1.6E-74 555.0 40.7 350 1-404 17-428 (542)
32 PTZ00114 Heat shock protein 60 100.0 1.3E-69 2.9E-74 555.7 42.0 350 2-406 30-443 (555)
33 PRK12851 groEL chaperonin GroE 100.0 2.1E-69 4.5E-74 552.2 40.9 352 1-406 18-431 (541)
34 KOG0359|consensus 100.0 1.5E-71 3.3E-76 519.7 19.7 391 2-406 25-419 (520)
35 TIGR02348 GroEL chaperonin Gro 100.0 6.2E-69 1.3E-73 547.9 39.8 347 2-403 17-426 (524)
36 PRK12850 groEL chaperonin GroE 100.0 5.6E-69 1.2E-73 549.3 39.6 350 1-404 18-429 (544)
37 PRK12852 groEL chaperonin GroE 100.0 1.1E-67 2.4E-72 540.9 39.4 351 1-406 18-431 (545)
38 CHL00093 groEL chaperonin GroE 100.0 4E-67 8.6E-72 535.1 37.8 352 2-406 18-430 (529)
39 PRK14104 chaperonin GroEL; Pro 100.0 6.5E-66 1.4E-70 526.4 40.2 350 1-405 18-430 (546)
40 PLN03167 Chaperonin-60 beta su 100.0 1.5E-66 3.3E-71 533.8 35.0 352 2-406 74-485 (600)
41 KOG0357|consensus 100.0 3.6E-53 7.7E-58 385.4 16.4 260 2-406 36-297 (400)
42 cd03334 Fab1_TCP TCP-1 like do 100.0 1.1E-45 2.4E-50 345.0 25.8 235 139-387 16-257 (261)
43 cd03333 chaperonin_like chaper 100.0 5.2E-41 1.1E-45 305.4 24.4 208 124-383 2-209 (209)
44 KOG0356|consensus 100.0 1.6E-35 3.4E-40 286.8 25.6 353 2-404 32-443 (550)
45 KOG0230|consensus 100.0 7.6E-28 1.6E-32 254.6 16.2 238 141-391 332-574 (1598)
46 PF02579 Nitro_FeMo-Co: Dinitr 80.1 7 0.00015 29.8 6.4 40 251-291 44-83 (94)
47 COG1433 Uncharacterized conser 76.8 11 0.00025 30.7 6.7 53 251-304 56-108 (121)
48 cd00851 MTH1175 This uncharact 76.5 6.9 0.00015 30.5 5.4 39 251-290 54-92 (103)
49 cd00562 NifX_NifB This CD repr 66.9 20 0.00044 27.6 6.1 38 252-290 53-90 (102)
50 PRK13600 putative ribosomal pr 66.4 32 0.0007 26.2 6.7 51 249-299 18-72 (84)
51 PRK07283 hypothetical protein; 62.8 37 0.00081 26.5 6.8 51 250-303 24-78 (98)
52 cd04743 NPD_PKS 2-Nitropropane 57.4 45 0.00097 32.2 7.5 56 250-306 72-127 (320)
53 cd01143 YvrC Periplasmic bindi 57.1 33 0.00072 29.8 6.4 52 253-304 53-111 (195)
54 PRK09534 btuF corrinoid ABC tr 56.9 31 0.00068 33.9 6.7 53 252-304 111-170 (359)
55 TIGR03151 enACPred_II putative 55.5 56 0.0012 31.4 8.0 58 250-307 77-134 (307)
56 cd00852 NifB NifB belongs to a 55.1 46 0.00099 26.2 6.2 31 259-290 64-94 (106)
57 cd01144 BtuF Cobalamin binding 54.3 43 0.00094 30.4 6.9 52 253-304 50-108 (245)
58 TIGR03677 rpl7ae 50S ribosomal 53.9 54 0.0012 26.6 6.5 49 250-298 32-85 (117)
59 PRK13602 putative ribosomal pr 53.7 68 0.0015 24.2 6.6 52 250-304 17-72 (82)
60 PRK04175 rpl7ae 50S ribosomal 53.0 61 0.0013 26.5 6.7 51 250-303 36-91 (122)
61 TIGR03659 IsdE heme ABC transp 52.8 37 0.0008 32.0 6.3 52 253-304 84-141 (289)
62 PRK06683 hypothetical protein; 51.9 72 0.0016 24.1 6.4 52 250-304 17-72 (82)
63 PRK07714 hypothetical protein; 51.8 75 0.0016 24.8 6.8 52 250-304 24-79 (100)
64 PF01248 Ribosomal_L7Ae: Ribos 49.2 42 0.0009 25.8 5.0 53 249-304 20-77 (95)
65 cd01141 TroA_d Periplasmic bin 49.0 46 0.001 28.8 5.9 50 253-302 62-119 (186)
66 PTZ00106 60S ribosomal protein 48.9 71 0.0015 25.5 6.3 51 250-303 31-86 (108)
67 TIGR02663 nifX nitrogen fixati 48.8 71 0.0015 25.8 6.5 51 250-303 55-109 (119)
68 cd03465 URO-D_like The URO-D _ 46.7 1.7E+02 0.0037 28.0 10.0 46 243-288 204-249 (330)
69 PRK13601 putative L7Ae-like ri 46.4 99 0.0021 23.4 6.4 51 251-304 15-69 (82)
70 cd00853 NifX NifX belongs to a 45.1 95 0.0021 24.1 6.6 31 259-290 60-90 (102)
71 PRK01018 50S ribosomal protein 43.7 1.2E+02 0.0026 23.7 6.8 51 250-303 22-77 (99)
72 PF03060 NMO: Nitronate monoox 43.2 97 0.0021 30.0 7.6 58 249-306 102-160 (330)
73 PF12846 AAA_10: AAA-like doma 42.0 68 0.0015 29.8 6.3 57 248-304 241-302 (304)
74 PF07905 PucR: Purine cataboli 40.4 93 0.002 25.2 6.0 47 248-294 60-111 (123)
75 TIGR00129 fdhD_narQ formate de 40.2 50 0.0011 30.4 4.8 43 251-293 183-225 (237)
76 PF02603 Hpr_kinase_N: HPr Ser 39.8 31 0.00068 28.3 3.1 51 238-288 59-111 (127)
77 PF01784 NIF3: NIF3 (NGG1p int 39.7 2.5E+02 0.0054 25.7 9.4 112 251-368 44-189 (241)
78 PRK03379 vitamin B12-transport 39.0 73 0.0016 29.5 5.8 51 253-303 65-122 (260)
79 cd00636 TroA-like Helical back 38.0 1.1E+02 0.0024 24.3 6.3 35 253-287 54-88 (148)
80 COG1358 RPL8A Ribosomal protei 37.8 1.5E+02 0.0033 24.0 6.7 51 249-299 32-87 (116)
81 cd01139 TroA_f Periplasmic bin 37.2 92 0.002 30.0 6.5 51 253-303 84-147 (342)
82 TIGR03859 PQQ_PqqD coenzyme PQ 36.7 1.3E+02 0.0028 22.5 5.7 48 15-62 12-59 (81)
83 PRK00724 formate dehydrogenase 36.5 60 0.0013 30.4 4.8 42 251-292 212-253 (263)
84 PF01497 Peripla_BP_2: Peripla 36.0 1.3E+02 0.0027 26.9 6.9 51 254-304 54-112 (238)
85 smart00574 POX domain associat 36.0 40 0.00086 28.2 3.0 45 361-405 84-128 (140)
86 cd01138 FeuA Periplasmic bindi 35.8 91 0.002 28.3 5.9 51 253-304 59-113 (248)
87 PRK05583 ribosomal protein L7A 35.8 1.8E+02 0.0039 23.0 6.7 52 251-305 24-79 (104)
88 cd01149 HutB Hemin binding pro 33.8 1.1E+02 0.0025 27.5 6.2 52 253-304 51-110 (235)
89 COG4359 Uncharacterized conser 33.3 98 0.0021 27.4 5.1 45 248-292 77-125 (220)
90 PRK03298 hypothetical protein; 33.1 1.4E+02 0.0029 27.2 6.1 46 249-295 165-214 (224)
91 PF02634 FdhD-NarQ: FdhD/NarQ 32.8 70 0.0015 29.4 4.5 41 251-291 183-223 (236)
92 PRK05718 keto-hydroxyglutarate 32.7 1.6E+02 0.0034 26.7 6.6 55 253-309 80-135 (212)
93 COG1526 FdhD Uncharacterized p 32.4 71 0.0015 30.0 4.5 44 251-294 212-255 (266)
94 cd01146 FhuD Fe3+-siderophore 32.1 1.4E+02 0.003 27.3 6.5 52 253-304 58-115 (256)
95 PRK05476 S-adenosyl-L-homocyst 31.9 85 0.0018 31.7 5.2 41 250-290 62-105 (425)
96 PRK06552 keto-hydroxyglutarate 31.7 3.2E+02 0.007 24.6 8.6 54 252-307 80-134 (213)
97 PF13380 CoA_binding_2: CoA bi 31.0 1.4E+02 0.0031 23.9 5.6 40 249-288 68-108 (116)
98 KOG2663|consensus 30.5 54 0.0012 30.3 3.2 27 351-378 121-147 (309)
99 PF08708 PriCT_1: Primase C te 30.3 2.1E+02 0.0045 20.5 6.9 53 77-135 15-67 (71)
100 TIGR03867 MprA_tail MprA prote 30.3 44 0.00096 19.5 1.7 13 389-401 2-14 (27)
101 cd01140 FatB Siderophore bindi 29.4 1.4E+02 0.0029 27.6 6.0 52 253-304 65-123 (270)
102 PF00809 Pterin_bind: Pterin b 28.9 1.5E+02 0.0032 26.7 5.9 65 243-307 53-121 (210)
103 cd01147 HemV-2 Metal binding p 28.7 1.4E+02 0.0031 27.2 6.0 51 253-303 67-126 (262)
104 PF13167 GTP-bdg_N: GTP-bindin 28.6 1.8E+02 0.0039 22.7 5.5 38 252-289 49-87 (95)
105 PF04471 Mrr_cat: Restriction 28.1 86 0.0019 24.3 3.9 39 249-287 66-107 (115)
106 PF04864 Alliinase_C: Allinase 27.5 66 0.0014 31.3 3.4 40 360-399 42-82 (363)
107 COG1129 MglA ABC-type sugar tr 26.8 67 0.0015 33.0 3.5 47 207-272 161-207 (500)
108 KOG1481|consensus 26.5 24 0.00053 33.2 0.3 56 334-391 47-102 (391)
109 PF07526 POX: Associated with 26.2 54 0.0012 27.6 2.3 44 362-405 85-128 (140)
110 PF02796 HTH_7: Helix-turn-hel 24.9 73 0.0016 20.7 2.3 33 79-111 11-43 (45)
111 cd03308 CmuA_CmuC_like CmuA_Cm 24.6 4E+02 0.0086 26.3 8.6 47 234-283 245-291 (378)
112 KOG1593|consensus 24.4 95 0.0021 28.9 3.7 36 367-402 105-142 (349)
113 COG3962 Acetolactate synthase 24.4 69 0.0015 32.5 3.0 39 367-406 216-254 (617)
114 PF06506 PrpR_N: Propionate ca 24.1 4.6E+02 0.01 22.5 9.0 69 207-290 75-151 (176)
115 PLN02540 methylenetetrahydrofo 23.6 2.4E+02 0.0053 29.6 6.9 60 245-308 158-227 (565)
116 cd00717 URO-D Uroporphyrinogen 23.6 4E+02 0.0086 25.6 8.3 134 232-392 162-315 (335)
117 PF12554 MOZART1: Mitotic-spin 23.2 1.2E+02 0.0026 20.4 3.1 23 77-99 22-44 (48)
118 TIGR00677 fadh2_euk methylenet 22.9 1.4E+02 0.0031 28.2 4.8 59 246-308 151-219 (281)
119 TIGR00679 hpr-ser Hpr(Ser) kin 22.2 3.2E+02 0.0068 26.3 6.9 44 245-288 67-112 (304)
120 cd03309 CmuC_like CmuC_like. P 22.0 4.8E+02 0.01 25.2 8.3 67 234-303 188-256 (321)
121 COG1137 YhbG ABC-type (unclass 21.9 1.7E+02 0.0036 26.6 4.6 45 208-271 156-200 (243)
122 cd01148 TroA_a Metal binding p 21.8 1.7E+02 0.0036 27.2 5.1 52 253-304 72-142 (284)
123 cd00537 MTHFR Methylenetetrahy 21.8 3.2E+02 0.0069 25.5 7.0 60 245-308 149-218 (274)
124 PRK04247 hypothetical protein; 21.3 2.4E+02 0.0052 26.0 5.7 29 259-287 204-232 (238)
125 COG0614 FepB ABC-type Fe3+-hyd 21.1 2.4E+02 0.0053 26.4 6.2 52 253-304 108-165 (319)
126 PRK05428 HPr kinase/phosphoryl 20.4 3.9E+02 0.0084 25.7 7.1 53 237-289 59-113 (308)
127 PF00702 Hydrolase: haloacid d 20.3 2.4E+02 0.0052 24.5 5.6 55 249-303 132-193 (215)
128 PF05402 PqqD: Coenzyme PQQ sy 20.2 1.2E+02 0.0025 21.4 2.9 36 26-61 9-44 (68)
129 PF01136 Peptidase_U32: Peptid 20.2 5E+02 0.011 23.3 7.8 32 270-301 48-82 (233)
130 TIGR01544 HAD-SF-IE haloacid d 20.2 2.3E+02 0.0051 26.8 5.6 35 249-283 126-160 (277)
131 COG4256 HemP Hemin uptake prot 20.2 59 0.0013 22.8 1.1 27 12-40 32-61 (63)
No 1
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.1e-89 Score=701.06 Aligned_cols=399 Identities=41% Similarity=0.656 Sum_probs=384.6
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++|+++||+
T Consensus 23 ~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~ 102 (519)
T TIGR02339 23 AAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELLE 102 (519)
T ss_pred HHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCC-CCchHHHHHHHHHHHHHhcc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLI-GPDDNFFATMVVDAAQAIKI 159 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~~ls~l~v~a~~~v~~ 159 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+++||+. +.+.++|++++++|+..+++
T Consensus 103 ~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~ 181 (519)
T TIGR02339 103 KAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEI-ATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAE 181 (519)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 9998767789999999999999999 78999999999999999986
Q ss_pred cccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 160 TEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 160 ~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
..++|...+|+++|++++++||+++||++++|++|++++.+++|++.++||||++++++||+++++.++++.+++++++.
T Consensus 182 ~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~ 261 (519)
T TIGR02339 182 KRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIK 261 (519)
T ss_pred hccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHH
Confidence 43234445888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccC
Q psy14917 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFE 319 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~ 319 (407)
++.++|++++++++++|++.|+++|+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++.+
T Consensus 262 ~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~--- 338 (519)
T TIGR02339 262 KFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESD--- 338 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHH
Q psy14917 320 ASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSI 399 (407)
Q Consensus 320 ~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~ 399 (407)
+|+|+.|+++++|+++|++|++|+++..|||+||||++.+++|+||+++||++++++++++|++||||||+|++||+
T Consensus 339 ---LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~ 415 (519)
T TIGR02339 339 ---LGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELAL 415 (519)
T ss_pred ---ccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy14917 400 YLENFAT 406 (407)
Q Consensus 400 ~l~~~a~ 406 (407)
+|+++++
T Consensus 416 ~l~~~~~ 422 (519)
T TIGR02339 416 RLRSYAR 422 (519)
T ss_pred HHHHHhh
Confidence 9998864
No 2
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.9e-89 Score=696.79 Aligned_cols=405 Identities=77% Similarity=1.121 Sum_probs=385.4
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+|+|+++||+
T Consensus 15 ~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll~ 94 (527)
T cd03335 15 TAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLK 94 (527)
T ss_pred HHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHh-hccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQ-QLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKI 159 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~ 159 (407)
++.+|+++|+||+.|++||+.|++.++++|++ + +++++..+++.|.++|+|+++||+.+.+.++|++++++|+..++.
T Consensus 95 ~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~-~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~ 173 (527)
T cd03335 95 RANELVKQKIHPTTIISGYRLACKEAVKYIKEHL-SISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKT 173 (527)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhh-ccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999996 7 888876689999999999999999998899999999999999964
Q ss_pred cccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 160 TEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 160 ~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
...++...+|+++|++++.+||++.+|++++|++|++++.++.||+.++||||++++++|++++++.+.++.++++++++
T Consensus 174 ~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le 253 (527)
T cd03335 174 TNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLE 253 (527)
T ss_pred ccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHH
Confidence 22223334788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccC
Q psy14917 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFE 319 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~ 319 (407)
.+.+.|++++++++++|.+.|+++|+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++.+.++
T Consensus 254 ~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~ 333 (527)
T cd03335 254 KIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFD 333 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876654555
Q ss_pred CCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHH
Q psy14917 320 ASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSI 399 (407)
Q Consensus 320 ~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~ 399 (407)
+..+|+|+.|+++++|+++|++|++|+++++|||+|||+|+.+++|+||+++||++++++++++|++||||||+|++||.
T Consensus 334 ~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~ 413 (527)
T cd03335 334 PSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSI 413 (527)
T ss_pred HhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHH
Confidence 66699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy14917 400 YLENFAT 406 (407)
Q Consensus 400 ~l~~~a~ 406 (407)
+|+++|+
T Consensus 414 ~L~~~~~ 420 (527)
T cd03335 414 YLENFAT 420 (527)
T ss_pred HHHHHHh
Confidence 9998875
No 3
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.6e-89 Score=697.86 Aligned_cols=399 Identities=32% Similarity=0.528 Sum_probs=382.6
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+|+|+++||+
T Consensus 23 ~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~ 102 (525)
T TIGR02344 23 QAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLS 102 (525)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+.+.|.++++|+++||+.++|.+.|++++++|+..+.++
T Consensus 103 ~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~ 181 (525)
T TIGR02344 103 VAEPFLEQNIHPTIIIRAYKKALDDALSVLEEI-SIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRD 181 (525)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999 9999877889999999999999999999999999999999999875
Q ss_pred ccCCCccccCC-ceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 161 EKSGNVTYPIK-AINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 161 ~~~~~~~~~~~-~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
..++...+|++ +|++++++||+++||++++|++|++++.++.||+.++||||++++++|++++++.+.++.++++++++
T Consensus 182 ~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~ 261 (525)
T TIGR02344 182 LGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWN 261 (525)
T ss_pred ccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEecccccccccccceEEeCCHHHHH
Confidence 42222245554 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccC
Q psy14917 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFE 319 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~ 319 (407)
++.++|++++++++++|.+.|++||+|+++|++.+++||.++||++++++++++|+|||++|||+++++++++++++
T Consensus 262 ~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~--- 338 (525)
T TIGR02344 262 RILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESD--- 338 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCcee-eeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHH
Q psy14917 320 ASSLGE-AAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALS 398 (407)
Q Consensus 320 ~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la 398 (407)
+|+ |+.|+++++|+++|++|++|+++++|||+|||+++.+++|+||+++||+++++++++++++||||||+|++||
T Consensus 339 ---lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls 415 (525)
T TIGR02344 339 ---VGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVS 415 (525)
T ss_pred ---cCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy14917 399 IYLENFAT 406 (407)
Q Consensus 399 ~~l~~~a~ 406 (407)
.+|+++|+
T Consensus 416 ~~l~~~~~ 423 (525)
T TIGR02344 416 VYLAKKAS 423 (525)
T ss_pred HHHHHHHh
Confidence 99998864
No 4
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9e-88 Score=689.70 Aligned_cols=398 Identities=43% Similarity=0.685 Sum_probs=383.6
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+|+|+++++++|++++||||||+++|+++|++
T Consensus 22 ~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~ 101 (517)
T cd03343 22 AAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLE 101 (517)
T ss_pred HHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++.+++++|+||..|++||+.|++.++++|+++ +.+++..+.+.|.++|+|+++||+.+.+.+.|++++++|+..+++.
T Consensus 102 ~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~ 180 (517)
T cd03343 102 KAEDLLDQNIHPTVIIEGYRLAAEKALELLDEI-AIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEK 180 (517)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-hcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999 9888766889999999999999999999999999999999999764
Q ss_pred ccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHH
Q psy14917 161 EKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240 (407)
Q Consensus 161 ~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~ 240 (407)
.. +...+|+++|+|++++|++++||++++|++|++++.+++|++.++||||++++++||+++++.++++.+++.+++.+
T Consensus 181 ~~-~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~ 259 (517)
T cd03343 181 RD-GKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQA 259 (517)
T ss_pred cC-CCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHH
Confidence 22 22357888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccCC
Q psy14917 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEA 320 (407)
Q Consensus 241 ~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~~ 320 (407)
+.++|++++++++++|++.|+++|+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++
T Consensus 260 ~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~---- 335 (517)
T cd03343 260 FLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPED---- 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHH
Q psy14917 321 SSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIY 400 (407)
Q Consensus 321 ~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~ 400 (407)
+|+|+.|++.++|+++|++|++|++++.|||+||||++.+++|+||+++||++++|+++++|++|||||++|+++|++
T Consensus 336 --LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~ 413 (517)
T cd03343 336 --LGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKR 413 (517)
T ss_pred --CCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy14917 401 LENFAT 406 (407)
Q Consensus 401 l~~~a~ 406 (407)
|+++++
T Consensus 414 L~~~~~ 419 (517)
T cd03343 414 LREYAR 419 (517)
T ss_pred HHHHHh
Confidence 998864
No 5
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.5e-88 Score=688.86 Aligned_cols=396 Identities=34% Similarity=0.532 Sum_probs=379.5
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|+++++++|++++||||||+++|+++||+
T Consensus 34 ~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~ 113 (532)
T TIGR02343 34 AAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLE 113 (532)
T ss_pred HHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccC--CCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISV--DELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIK 158 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~--~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~ 158 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ ++++ +..+++.|.++|+|++++|+.+.+.+.|++++++|+..+.
T Consensus 114 ~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~ 192 (532)
T TIGR02343 114 QAEALLDKGIHPIKIAEGFEVAARVAVEHLEEI-SEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVA 192 (532)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999998 8876 3346889999999999999998899999999999999986
Q ss_pred ccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHH
Q psy14917 159 ITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~ 238 (407)
+... ..+|+++|++++++||+++||++++|++|++++.+++||+.++||||++++++|++++++.+.++.+++++++
T Consensus 193 ~~~~---~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~ 269 (532)
T TIGR02343 193 DMER---RDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEY 269 (532)
T ss_pred hcCC---CcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHH
Confidence 5321 2478899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCcccc
Q psy14917 239 DGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESF 318 (407)
Q Consensus 239 ~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~ 318 (407)
+++.+.|++++++++++|++.|+++|+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++
T Consensus 270 ~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~-- 347 (532)
T TIGR02343 270 KKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDK-- 347 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCceeeeeEEEEEecC--eeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy14917 319 EASSLGEAAEVVQTQVCD--DELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAA 396 (407)
Q Consensus 319 ~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~ 396 (407)
+|+|+.|++..+|+ ++|++|++|++++.|||+|||+|+.+++|.||+++||++++++++++|++||||||+|++
T Consensus 348 ----LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ 423 (532)
T TIGR02343 348 ----LGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEIS 423 (532)
T ss_pred ----CcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHH
Confidence 99999999999997 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy14917 397 LSIYLENFAT 406 (407)
Q Consensus 397 la~~l~~~a~ 406 (407)
||++|+++|+
T Consensus 424 ls~~l~~~~~ 433 (532)
T TIGR02343 424 CSLAVSQEAD 433 (532)
T ss_pred HHHHHHHHhc
Confidence 9999998875
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-87 Score=684.87 Aligned_cols=395 Identities=30% Similarity=0.498 Sum_probs=379.5
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++||+
T Consensus 23 ~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~ 102 (531)
T TIGR02347 23 NAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDGTTSTVILIGELLK 102 (531)
T ss_pred HHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccC-CCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISV-DELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKI 159 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~-~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~ 159 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ ++++ +..+.+.|.++|+|+++||+.+++.++|++++++|+..+++
T Consensus 103 ~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~ 181 (531)
T TIGR02347 103 QAERYILEGIHPRILTEGFEIARGELLEFLDKF-KIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKK 181 (531)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 8765 35688999999999999999999999999999999999986
Q ss_pred cccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 160 TEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 160 ~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
+.. .+|+++|++++.+|+++.||++++|++|++++.+++||++++||||++++++|++++++.+.++.+++++++.
T Consensus 182 ~~~----~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~ 257 (531)
T TIGR02347 182 DGE----QIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQRE 257 (531)
T ss_pred cCC----CCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCceEEEcCHHHHH
Confidence 321 3777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-------Cc---EEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeecccc
Q psy14917 240 GIRARESDITKERINKILATG-------AN---VILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSL 309 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~-------~~---lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~ 309 (407)
.+.+.|++++++++++|++.+ ++ +|+|+++|++.+++||.++||++++|+++++|+|||++|||++++++
T Consensus 258 ~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l 337 (531)
T TIGR02347 258 KLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSV 337 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEeccc
Confidence 999999999999999999976 26 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeC
Q psy14917 310 SNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAG 389 (407)
Q Consensus 310 ~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpG 389 (407)
+++++++ +|+|+.|+++.+|+++|++|++|++++.|||+|||+|+.+++|+||+++||++++++++++|++|||
T Consensus 338 ~~~~~~~------LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpG 411 (531)
T TIGR02347 338 EDLTPEC------LGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPG 411 (531)
T ss_pred ccCCccc------cccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeC
Confidence 9999887 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q psy14917 390 GGAVEAALSIYLENFAT 406 (407)
Q Consensus 390 GG~~E~~la~~l~~~a~ 406 (407)
|||+|++||.+|+++|+
T Consensus 412 GGa~E~~ls~~l~~~~~ 428 (531)
T TIGR02347 412 AGAFEIAAYCHLKEEKK 428 (531)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999874
No 7
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-87 Score=688.21 Aligned_cols=396 Identities=35% Similarity=0.552 Sum_probs=379.3
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|+++++++|++++||||||+++|+++||+
T Consensus 30 ~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll~ 109 (526)
T cd03339 30 LAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLE 109 (526)
T ss_pred HHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCC--CCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD--ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIK 158 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~--~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~ 158 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ +++++ ..+.+.|.++|+|++++|+.+.+.+.|++++++|+..+.
T Consensus 110 ~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~ 188 (526)
T cd03339 110 QAEKLLDRGIHPIRIADGYEQACKIAVEHLEEI-ADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVA 188 (526)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 88774 246888999999999999998999999999999999987
Q ss_pred ccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHH
Q psy14917 159 ITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~ 238 (407)
+... ..+|+++|++++++||+++||++++|++|++++.+++|++.++||||++++++|++++++++.++.+++++++
T Consensus 189 ~~~~---~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~ 265 (526)
T cd03339 189 DLER---KDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDY 265 (526)
T ss_pred hcCC---CccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccccceEEEeCCHHHH
Confidence 5322 1367789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCcccc
Q psy14917 239 DGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESF 318 (407)
Q Consensus 239 ~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~ 318 (407)
+++.++|+++++++++++++.|+++|+++++|++.+++||.++||++++++++++|+|||++|||.++++++++++.+
T Consensus 266 ~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~-- 343 (526)
T cd03339 266 KKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEK-- 343 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCceeeeeEEEEEecC--eeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy14917 319 EASSLGEAAEVVQTQVCD--DELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAA 396 (407)
Q Consensus 319 ~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~ 396 (407)
+|+|+.|++..+|+ ++|++|++|+++++|||+|||+|+.+++|+||+++||++++++++++|++||||||+|++
T Consensus 344 ----LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ 419 (526)
T cd03339 344 ----LGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEIS 419 (526)
T ss_pred ----cccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHH
Confidence 99999999999985 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy14917 397 LSIYLENFAT 406 (407)
Q Consensus 397 la~~l~~~a~ 406 (407)
+|++|+++++
T Consensus 420 ls~~l~~~~~ 429 (526)
T cd03339 420 CSLAVEKAAD 429 (526)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 8
>KOG0361|consensus
Probab=100.00 E-value=2.8e-89 Score=630.54 Aligned_cols=393 Identities=39% Similarity=0.607 Sum_probs=378.9
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+||..+++.++|||||+|+||+|+++.|+++|||||+||||.|++-||+|+.+++.+++||.++||||||||+|++++|+
T Consensus 27 naC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk 106 (543)
T KOG0361|consen 27 NACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLK 106 (543)
T ss_pred HHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCC----HHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELG----KECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~----~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
++..+++.|+||+.|+++|+.|...|++.++++ ++.++..+ ++.|.+.|.|+++||+++++.++|++++|+|+..
T Consensus 107 ~~Kpfiedgv~~~~iir~~rka~~l~v~ki~el-av~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ 185 (543)
T KOG0361|consen 107 EAKPFIEDGVHPQLIIRAYRKARQLAVEKIKEL-AVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLT 185 (543)
T ss_pred hhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHh-eeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 88776333 6778999999999999999999999999999998
Q ss_pred hcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEeccccccc---ccccccCceEEEEeecccccccccCeEEEec
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQA---MKKKITNAKIACLDFSLQKAKMKLGVEVLVN 233 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~---~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~ 233 (407)
+.. ..+.+.|-|+|++||+++||.+++|+.|.+.|++.+ .|+++.||||+++|..||.+.++.++++.+.
T Consensus 186 ld~-------~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~ 258 (543)
T KOG0361|consen 186 LDN-------DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVD 258 (543)
T ss_pred hcc-------ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecC
Confidence 763 256779999999999999999999999999999865 5899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCC
Q psy14917 234 DPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNME 313 (407)
Q Consensus 234 ~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~ 313 (407)
++++++.+.+.||..+.++++++.+.|+|||++.-.|.|.|.|||++++|.|..||+.+||.|+..++|+++.++..++.
T Consensus 259 ~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~ 338 (543)
T KOG0361|consen 259 NVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIK 338 (543)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy14917 314 GEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAV 393 (407)
Q Consensus 314 ~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~ 393 (407)
+.. ||.|..|+++++|++||.+|++|+..+.||++|||+.++.++|.+|++|||++++|.++++..+|+|||++
T Consensus 339 ~~~------LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGai 412 (543)
T KOG0361|consen 339 EEV------LGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAI 412 (543)
T ss_pred hhh------cchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCcee
Confidence 877 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC
Q psy14917 394 EAALSIYLENFATT 407 (407)
Q Consensus 394 E~~la~~l~~~a~~ 407 (407)
||+||++||+|+++
T Consensus 413 EMElSk~lRd~S~t 426 (543)
T KOG0361|consen 413 EMELSKYLRDYSRT 426 (543)
T ss_pred eehHHHHHHHhhcc
Confidence 99999999999874
No 9
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.9e-87 Score=682.23 Aligned_cols=397 Identities=35% Similarity=0.580 Sum_probs=381.8
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++|+++||+
T Consensus 16 ~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~ 95 (517)
T TIGR02342 16 VAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLG 95 (517)
T ss_pred HHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+.+.|.++++|++++|+.+.+.+.|++++++|+..+.+.
T Consensus 96 ~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~ 174 (517)
T TIGR02342 96 ACETLLERGIHPTTISESFQIAADEAIKILDEM-SIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDP 174 (517)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999 9988767899999999999999999999999999999999999864
Q ss_pred ccCCCccccCCceEEEEcCCCCCCCceeEeeEEEeccccc-ccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 161 EKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVAS-QAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 161 ~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~-~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
..++ .+|+++|++++++||+++||++++|++|++++.+ .+||+.++||||++++++|++++++.+.++.++++++++
T Consensus 175 ~~~~--~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~ 252 (517)
T TIGR02342 175 ENDK--NVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMD 252 (517)
T ss_pred ccCC--ccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHH
Confidence 3223 4788899999999999999999999999999998 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCC
Q psy14917 240 GIRARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEG 314 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I-----~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~ 314 (407)
.+.++|+++++++++++++.|+++|+|+++| ++.+++||.++||.+++++++++|+|||++|||+++++++++++
T Consensus 253 ~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~ 332 (517)
T TIGR02342 253 RVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTA 332 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCc
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999988
Q ss_pred ccccCCCCceeeeeEEEEEecCeeEEEEECCCCC-CeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy14917 315 EESFEASSLGEAAEVVQTQVCDDELILINGPKAR-TAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAV 393 (407)
Q Consensus 315 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~ 393 (407)
.+ +|+|+.|+++++|+++|++|++|+++ +.+||+|||||+.+++|.||+++||+++++++++++++||||||+
T Consensus 333 ~~------LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~ 406 (517)
T TIGR02342 333 DK------LGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAP 406 (517)
T ss_pred cc------CcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHH
Confidence 87 99999999999999999999999884 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q psy14917 394 EAALSIYLENFAT 406 (407)
Q Consensus 394 E~~la~~l~~~a~ 406 (407)
|++||++|+++|+
T Consensus 407 e~~ls~~l~~~~~ 419 (517)
T TIGR02342 407 EIEIAIKLSKLAR 419 (517)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 10
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7e-87 Score=683.85 Aligned_cols=406 Identities=74% Similarity=1.105 Sum_probs=385.2
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|+++++++|++++||||||+++|+++||+
T Consensus 19 ~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll~ 98 (536)
T TIGR02340 19 TAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLK 98 (536)
T ss_pred HHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++.+|+++|+||+.|++||+.|++.++++|++..+++++..+.+.|.++|+|+++||+.+.+++.|++++++|+..++..
T Consensus 99 ~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~ 178 (536)
T TIGR02340 99 RADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMT 178 (536)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999987427888766888999999999999999999999999999999999643
Q ss_pred ccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHH
Q psy14917 161 EKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240 (407)
Q Consensus 161 ~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~ 240 (407)
..+|...+|+++|++++++||++.||++++|++|++++.++.||+.++||||++++++|++.+++.+.++.++++.+++.
T Consensus 179 ~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~ 258 (536)
T TIGR02340 179 NENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEG 258 (536)
T ss_pred cccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHH
Confidence 22343357888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccCC
Q psy14917 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEA 320 (407)
Q Consensus 241 ~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~~ 320 (407)
+.+.|++++++.+++|++.|+++|+++++|++.+++||.++||++++|+++++|+|||++|||++++++.++.+.+++.+
T Consensus 259 ~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~ 338 (536)
T TIGR02340 259 IRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDA 338 (536)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987766555666
Q ss_pred CCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHH
Q psy14917 321 SSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIY 400 (407)
Q Consensus 321 ~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~ 400 (407)
..+|+|+.|+++++|+++|++|++|+++++|||+|||+|+.+++|+||+++||++++++++++|++||||||+|++++++
T Consensus 339 ~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~ 418 (536)
T TIGR02340 339 SYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIY 418 (536)
T ss_pred cccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy14917 401 LENFAT 406 (407)
Q Consensus 401 l~~~a~ 406 (407)
|+++++
T Consensus 419 l~~~~~ 424 (536)
T TIGR02340 419 LENFAT 424 (536)
T ss_pred HHHHhh
Confidence 998764
No 11
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.6e-87 Score=682.23 Aligned_cols=392 Identities=40% Similarity=0.628 Sum_probs=376.8
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+|+|+++||+
T Consensus 23 ~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll~ 102 (522)
T cd03340 23 NACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLK 102 (522)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCC----CHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL----GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~----~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ +++++.. +++.|.++|+|+++||+.+.+.++|++++++|+..
T Consensus 103 ~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~ 181 (522)
T cd03340 103 EAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEI-AVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLS 181 (522)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 8887543 37789999999999999999999999999999999
Q ss_pred hcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEeccccccc---ccccccCceEEEEeecccccccccCeEEEec
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQA---MKKKITNAKIACLDFSLQKAKMKLGVEVLVN 233 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~---~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~ 233 (407)
+.+. +|.++|++++++|+++.||++++|++|++++.+++ ||++++||||++++++|++++++.+.++.++
T Consensus 182 v~~~-------~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~ 254 (522)
T cd03340 182 LDDD-------LDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVE 254 (522)
T ss_pred hccc-------CChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCccccceEEEEC
Confidence 9652 46779999999999999999999999999998765 5899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCC
Q psy14917 234 DPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNME 313 (407)
Q Consensus 234 ~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~ 313 (407)
++++++++.+.|+++++++++++++.|+++|+++++|+|.+++||.++||++++++++++|+|||++|||++++++++++
T Consensus 255 ~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~ 334 (522)
T cd03340 255 DPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNIT 334 (522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy14917 314 GEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAV 393 (407)
Q Consensus 314 ~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~ 393 (407)
+++ +|+|+.|+++++|+++|++|++|++++.|||+|||+++.+++|.||+++||++++++++++|++||||||+
T Consensus 335 ~~~------LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~ 408 (522)
T cd03340 335 DDV------LGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAI 408 (522)
T ss_pred ccc------cccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHH
Confidence 877 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q psy14917 394 EAALSIYLENFAT 406 (407)
Q Consensus 394 E~~la~~l~~~a~ 406 (407)
|++++.+|+++|+
T Consensus 409 E~~ls~~l~~~~~ 421 (522)
T cd03340 409 EMELSKYLRDYSR 421 (522)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999865
No 12
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.1e-86 Score=675.44 Aligned_cols=391 Identities=37% Similarity=0.582 Sum_probs=374.4
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcC--CCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDD--IGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAEL 78 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~l 78 (407)
.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+|+|+++++++|++++||||||+|+|+++|
T Consensus 20 ~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~L 99 (517)
T cd03336 20 VGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAEL 99 (517)
T ss_pred HHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHH
Confidence 37899999999999999999999998 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCC---CCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHH
Q psy14917 79 LKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE---LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQ 155 (407)
Q Consensus 79 l~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~---~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~ 155 (407)
|+++.+|+++|+||+.|++||+.|++.++++|+++ +++++. .+.+.|.++|+|+++||+.+.+.++|++++++|+.
T Consensus 100 l~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~ 178 (517)
T cd03336 100 LREAEKLVAQKIHPQTIIEGYRMATAAAREALLSS-AVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVL 178 (517)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 888742 24678999999999999999999999999999999
Q ss_pred HhcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeeccccccccc-CeEEEecC
Q psy14917 156 AIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVLVND 234 (407)
Q Consensus 156 ~v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~-~~~~~i~~ 234 (407)
.+.+ .++.++|++++++|++++||++++|+++++++.+ .||+.++||||++++++|++++++. ++++.+++
T Consensus 179 ~v~~-------~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~ 250 (517)
T cd03336 179 RLKG-------SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIKIFGAKVRVDS 250 (517)
T ss_pred Hhhc-------cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCcccccccCceEEeCC
Confidence 9853 2567899999999999999999999999999865 4799999999999999999999997 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCC
Q psy14917 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEG 314 (407)
Q Consensus 235 ~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~ 314 (407)
++++..+.+.|++++++++++|++.|+++++++++|++.+++||.++||++++++++++|+|||++|||+++++++++++
T Consensus 251 ~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~ 330 (517)
T cd03336 251 TAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPEL 330 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHH
Q psy14917 315 EESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVE 394 (407)
Q Consensus 315 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E 394 (407)
.+ +|+|+.|++..+|+++|++|++|+++++|||+|||+|+.+++|.||+++||++++++++++|++||||||+|
T Consensus 331 ~~------LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e 404 (517)
T cd03336 331 VK------LGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSE 404 (517)
T ss_pred cc------ccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHH
Confidence 87 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q psy14917 395 AALSIYLENFAT 406 (407)
Q Consensus 395 ~~la~~l~~~a~ 406 (407)
++||++|+++++
T Consensus 405 ~~ls~~l~~~~~ 416 (517)
T cd03336 405 MLMAKAVEELAK 416 (517)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 13
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.1e-86 Score=676.71 Aligned_cols=397 Identities=35% Similarity=0.578 Sum_probs=381.0
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++|+++|++
T Consensus 15 ~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~ 94 (515)
T cd03338 15 QAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLS 94 (515)
T ss_pred HHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++.+++++|+||+.|++||+.|++.++++|+++ +++++..+.+.|.++|+|+++||+.+.++++|++++++|+.+++++
T Consensus 95 ~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~ 173 (515)
T cd03338 95 ACESLLKKGIHPTVISESFQIAAKKAVEILDSM-SIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDP 173 (515)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999 9988766889999999999999999999999999999999999865
Q ss_pred ccCCCccccCCceEEEEcCCCCCCCceeEeeEEEeccccccc-ccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 161 EKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQA-MKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 161 ~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~-~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
... ..+|+++|++++.+|++++||++++|++|++++.++. ||+.++|||+++++|+|++++++.+.++.++++++++
T Consensus 174 ~~~--~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~ 251 (515)
T cd03338 174 ATA--TNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMD 251 (515)
T ss_pred ccc--CcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceEEeCCHHHHH
Confidence 321 2578899999999999999999999999999999876 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCC
Q psy14917 240 GIRARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEG 314 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I-----~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~ 314 (407)
.+.++|++++++++++|++.|+++|+|+++| ++.+++||.++||.+++++++++|+|||++|||+++++++++++
T Consensus 252 ~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~ 331 (515)
T cd03338 252 RILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTE 331 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCH
Confidence 9999999999999999999999999999998 89999999999999999999999999999999999999999988
Q ss_pred ccccCCCCceeeeeEEEEEecCeeEEEEECCCC-CCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy14917 315 EESFEASSLGEAAEVVQTQVCDDELILINGPKA-RTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAV 393 (407)
Q Consensus 315 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~ 393 (407)
.+ +|+|+.|++.++|+++|++|++|++ +++|||+|||+|+.+++|.||+++||++++++++++|++||||||+
T Consensus 332 ~~------LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~ 405 (515)
T cd03338 332 DK------LGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAP 405 (515)
T ss_pred hh------CCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHH
Confidence 77 9999999999999999999999987 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q psy14917 394 EAALSIYLENFAT 406 (407)
Q Consensus 394 E~~la~~l~~~a~ 406 (407)
|++||++|+++++
T Consensus 406 e~~ls~~l~~~~~ 418 (515)
T cd03338 406 EIEIALQLSEWAR 418 (515)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
No 14
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.3e-86 Score=675.80 Aligned_cols=391 Identities=38% Similarity=0.589 Sum_probs=375.0
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcC-----CCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDD-----IGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVA 75 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~-----~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~ 75 (407)
.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+|+|+++++++|++++||||||+|+|+
T Consensus 29 ~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa 108 (533)
T PTZ00212 29 VGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLA 108 (533)
T ss_pred HHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHhhhhhhCCchhHHHHHH
Confidence 37899999999999999999999998 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCC---HHHHHHHHHhhccCCCCCCchHHHHHHHHH
Q psy14917 76 AELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELG---KECLINAAKTSMSSKLIGPDDNFFATMVVD 152 (407)
Q Consensus 76 ~~ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~---~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~ 152 (407)
++||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+ .+.|.++|+|+++||+.+.+.+.|++++++
T Consensus 109 ~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~ 187 (533)
T PTZ00212 109 GELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEI-AFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVD 187 (533)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-CcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 98875433 678999999999999999999999999999
Q ss_pred HHHHhcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeeccccccccc-CeEEE
Q psy14917 153 AAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVL 231 (407)
Q Consensus 153 a~~~v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~-~~~~~ 231 (407)
|+..+.+. +++++|++++++||+++||++++|+++++++.+ .||++++||||++++++||+++++. ++++.
T Consensus 188 av~~i~~~-------~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~ 259 (533)
T PTZ00212 188 AVLRLKGS-------GNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPMDTDKIKIYGAKVK 259 (533)
T ss_pred HHHHHhcc-------CCccceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCCCCCCcccccCceEE
Confidence 99998642 567899999999999999999999999999876 5899999999999999999999997 88999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCC
Q psy14917 232 VNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSN 311 (407)
Q Consensus 232 i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~ 311 (407)
+++++++..+.+.|+++++++++.|++.|+++|+++++|++.+++||.++||+++++++.++++|||++|||++++++++
T Consensus 260 i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~ 339 (533)
T PTZ00212 260 VDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDT 339 (533)
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCC
Q psy14917 312 MEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGG 391 (407)
Q Consensus 312 l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG 391 (407)
+++.+ +|+|+.|++..+|+++|++|++|+.+++|||+|||+|+.+++|.||+++||++++++++++|++|||||
T Consensus 340 ~~~~~------LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGG 413 (533)
T PTZ00212 340 PEKVK------LGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGG 413 (533)
T ss_pred CCHHH------ccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCC
Confidence 98887 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q psy14917 392 AVEAALSIYLENFAT 406 (407)
Q Consensus 392 ~~E~~la~~l~~~a~ 406 (407)
|+|++||.+|+++++
T Consensus 414 a~e~~ls~~L~~~~~ 428 (533)
T PTZ00212 414 CSEMLMANAVEELAK 428 (533)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.6e-85 Score=669.24 Aligned_cols=392 Identities=40% Similarity=0.603 Sum_probs=376.2
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+||.+++++++|||||+||+|||+++.| ++|||||+|||++|+++||+|+|+++++++|++++||||||+|+|+++||+
T Consensus 25 ~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~ 103 (522)
T TIGR02345 25 NACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLK 103 (522)
T ss_pred HHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4799999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCC---CCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHh
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE---LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI 157 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~---~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v 157 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ +++++. .+.+.|.++|+|+++||+.+.++++|++++++|+..+
T Consensus 104 ~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v 182 (522)
T TIGR02345 104 EAKPFIEEGVHPQLIIRCYREALMLAIEKLKEI-AVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQL 182 (522)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 988752 2567899999999999999999999999999999999
Q ss_pred cccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEeccccccc---ccccccCceEEEEeecccccccccCeEEEecC
Q psy14917 158 KITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQA---MKKKITNAKIACLDFSLQKAKMKLGVEVLVND 234 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~---~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~ 234 (407)
+++ .+|.++|++++++||+++||++++|++|++++.+++ ||+.++||||++++++|++.+.+.+..+.+++
T Consensus 183 ~~~------~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~ 256 (522)
T TIGR02345 183 DID------DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEKDNAEIRVED 256 (522)
T ss_pred hhc------cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCccccceEEEECC
Confidence 753 267889999999999999999999999999998775 48999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCC
Q psy14917 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEG 314 (407)
Q Consensus 235 ~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~ 314 (407)
+++++++.+.|+++++++++++++.|+++|+|+++|++.+++||.++||+++++++.++++|++++|||+++++++++++
T Consensus 257 ~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~ 336 (522)
T TIGR02345 257 VEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEA 336 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHH
Q psy14917 315 EESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVE 394 (407)
Q Consensus 315 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E 394 (407)
++ +|+|+.|+++++|+++|++|++|+++++|||+|||+|+.+++|.||+++||+++++++++++++||||||+|
T Consensus 337 ~~------LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e 410 (522)
T TIGR02345 337 DV------LGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIE 410 (522)
T ss_pred hh------ccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHH
Confidence 77 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q psy14917 395 AALSIYLENFAT 406 (407)
Q Consensus 395 ~~la~~l~~~a~ 406 (407)
++++.+|+++|+
T Consensus 411 ~~ls~~l~~~~~ 422 (522)
T TIGR02345 411 MELSKILREHSK 422 (522)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.2e-84 Score=661.92 Aligned_cols=391 Identities=37% Similarity=0.562 Sum_probs=372.9
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCC--CCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDI--GDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAEL 78 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~--g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~l 78 (407)
.||.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+|+|+++++++|++++||||||+|+|+++|
T Consensus 21 ~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~L 100 (519)
T TIGR02341 21 VGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAEL 100 (519)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHH
Confidence 378999999999999999999999985 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCC---CHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHH
Q psy14917 79 LKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL---GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQ 155 (407)
Q Consensus 79 l~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~---~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~ 155 (407)
|+++.+|+++|+||+.|++||+.|++.++++|+++ +++++.. +.+.|.++++|++++|+.+.+.+.|++++++|+.
T Consensus 101 l~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~ 179 (519)
T TIGR02341 101 LREAEKLVNQKIHPQTIISGYRRATKAAQEALKKS-SIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVL 179 (519)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-cccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 9887422 4688999999999999999999999999999999
Q ss_pred HhcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeeccccccccc-CeEEEecC
Q psy14917 156 AIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVLVND 234 (407)
Q Consensus 156 ~v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~-~~~~~i~~ 234 (407)
.+.+. .+.++|++++++|++++||++++|+++++.+.+ .||+.++||||++++++|++++++. ++++.+++
T Consensus 180 ~i~~~-------~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~ 251 (519)
T TIGR02341 180 RLKGS-------GNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGSRVRVDS 251 (519)
T ss_pred HhccC-------CChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCccccCCceEEeCC
Confidence 98531 245679999999999999999999999999875 5899999999999999999999997 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCC
Q psy14917 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEG 314 (407)
Q Consensus 235 ~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~ 314 (407)
++++..+.+.|+++++++++.|++.|+++++++++|++.+++||.++||+++++++..+|+|||++|||+++++++++++
T Consensus 252 ~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~ 331 (519)
T TIGR02341 252 TAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPEL 331 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHH
Q psy14917 315 EESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVE 394 (407)
Q Consensus 315 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E 394 (407)
.+ +|+|+.|++..+|+++|++|++|++++.|||+|||+|+.+++|.||+++||+++++++++++++||||||+|
T Consensus 332 ~~------lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e 405 (519)
T TIGR02341 332 VK------LGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSE 405 (519)
T ss_pred cc------cccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHH
Confidence 77 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q psy14917 395 AALSIYLENFAT 406 (407)
Q Consensus 395 ~~la~~l~~~a~ 406 (407)
++||+.|+++++
T Consensus 406 ~~ls~~l~~~~~ 417 (519)
T TIGR02341 406 MLMSKAVAVEAQ 417 (519)
T ss_pred HHHHHHHHHHhh
Confidence 999999998875
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-84 Score=663.34 Aligned_cols=393 Identities=32% Similarity=0.545 Sum_probs=374.9
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+||..++++++|||||+||+|||++++|+++|||||+||+++|+++||+++|+++++++|++++||||||+|||+++||+
T Consensus 25 ~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~ 104 (531)
T TIGR02346 25 EACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLD 104 (531)
T ss_pred HHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccc-cC-CCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTI-SV-DELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIK 158 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~-~~-~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~ 158 (407)
++.+++++|+||+.|++||+.|++.++++|+++ ++ ++ +..+.+.|.++++|+++||+.+. +++|++++++|+..++
T Consensus 105 ~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~ 182 (531)
T TIGR02346 105 KAEELIRMGLHPSEIIKGYEQALKKAMEVLEEL-VVWEVEDVRNKKELIKALKASISSKQYGN-EDFLAQLVAKACSTVM 182 (531)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCCCHHHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 86 66 44568899999999999999988 9999999999999998
Q ss_pred ccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHH
Q psy14917 159 ITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~ 238 (407)
++.. ..++++.|++++++|++++||++++|++|++++. +||+.++||||+++++|+++++++.+.++.++++.++
T Consensus 183 ~~~~---~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l 257 (531)
T TIGR02346 183 PKNP---ENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEEL 257 (531)
T ss_pred hcCC---CcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccCceEEEECCHHHH
Confidence 6432 1478889999999999999999999999999954 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCcccc
Q psy14917 239 DGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESF 318 (407)
Q Consensus 239 ~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~ 318 (407)
.++...|+++++++++++++.|++||+++++|+|.+++||.++||.++++++..+|+|||.+|||+++++++++++++
T Consensus 258 ~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~-- 335 (531)
T TIGR02346 258 LNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEE-- 335 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCCceeeeeEEEEEecCeeEEEEECCC-CCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy14917 319 EASSLGEAAEVVQTQVCDDELILINGPK-ARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAAL 397 (407)
Q Consensus 319 ~~~~lG~~~~v~~~~~g~~~~~~~~~~~-~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~l 397 (407)
+|+|+.|++.++|+++|.+|++|+ .++.+||+|||||+.+++|.||+++||++++++++++|++||||||+|++|
T Consensus 336 ----LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~l 411 (531)
T TIGR02346 336 ----IGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIEL 411 (531)
T ss_pred ----ccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHH
Confidence 999999999999999999999988 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy14917 398 SIYLENFAT 406 (407)
Q Consensus 398 a~~l~~~a~ 406 (407)
|.+|+++|+
T Consensus 412 s~~L~~~~~ 420 (531)
T TIGR02346 412 ALRLKKYAN 420 (531)
T ss_pred HHHHHHHhc
Confidence 999998865
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.9e-83 Score=647.36 Aligned_cols=366 Identities=31% Similarity=0.521 Sum_probs=350.4
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++|+++||+
T Consensus 19 ~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~ 98 (484)
T cd03342 19 SAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLK 98 (484)
T ss_pred HHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCC-CCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE-LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKI 159 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~-~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~ 159 (407)
++.+++++|+||+.|++||+.|++.++++|+++ +.+++. .+.+.|.++|+++++||+.+.+.+.|++++++|+..+++
T Consensus 99 ~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~ 177 (484)
T cd03342 99 QAERYIQEGVHPRIITEGFELAKNKALKFLESF-KVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYK 177 (484)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 988853 488999999999999999999999999999999999986
Q ss_pred cccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 160 TEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 160 ~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
+. + .+|+++|++++++||++.||++++|++|++++.+++||++++||||++++++|++++++.+.++.++
T Consensus 178 ~~--~--~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~~~------ 247 (484)
T cd03342 178 PD--E--PIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYS------ 247 (484)
T ss_pred cC--C--ccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEEEE------
Confidence 43 1 4788899999999999999999999999999999999999999999999999999988877766542
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccC
Q psy14917 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFE 319 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~ 319 (407)
+|+|+++|++.+++||.++||++++++++++|+|||++|||+++++++++++++
T Consensus 248 -----------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~--- 301 (484)
T cd03342 248 -----------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPEC--- 301 (484)
T ss_pred -----------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhh---
Confidence 999999999999999999999999999999999999999999999999999887
Q ss_pred CCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHH
Q psy14917 320 ASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSI 399 (407)
Q Consensus 320 ~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~ 399 (407)
+|+|+.|+++.+|+++|++|++|++++.|||+|||+|+.+++|+||+++||++++++++++|++||||||+|++||.
T Consensus 302 ---LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~ 378 (484)
T cd03342 302 ---LGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYA 378 (484)
T ss_pred ---CcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy14917 400 YLENFAT 406 (407)
Q Consensus 400 ~l~~~a~ 406 (407)
+|+++|+
T Consensus 379 ~L~~~~~ 385 (484)
T cd03342 379 HLKEFKK 385 (484)
T ss_pred HHHHHhh
Confidence 9999875
No 19
>KOG0358|consensus
Probab=100.00 E-value=3.5e-84 Score=595.79 Aligned_cols=398 Identities=35% Similarity=0.581 Sum_probs=381.4
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+|++++++.+||||||+||||||+.+.|+++|||||+|||+.|.+-||+|+|+++.+..||.++||||||+|+|+++||+
T Consensus 33 ~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL~ 112 (534)
T KOG0358|consen 33 QAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLE 112 (534)
T ss_pred HHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEEEehhhHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
.+.+|+++|+||..|.+.|+.|.+.++++|+++ +.|++..|++.|.+-+.|+++||+.+++...+++++++|+.++..+
T Consensus 113 ~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m-~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp 191 (534)
T KOG0358|consen 113 AAEKLLQKGIHPTVISDSFQSAAKKAVDILDEM-SVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDP 191 (534)
T ss_pred HHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhc-CCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCc
Confidence 999999999999999999999999999999999 9999989999999999999999999999999999999999998764
Q ss_pred ccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHH
Q psy14917 161 EKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240 (407)
Q Consensus 161 ~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~ 240 (407)
.. ...+|+.+|++.+..||.++|+++++|++|++......-|++++++||.++.|.|.++|++...++.+++..+|++
T Consensus 192 ~~--~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdr 269 (534)
T KOG0358|consen 192 EN--ATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDR 269 (534)
T ss_pred cc--ccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHH
Confidence 33 2358899999999999999999999999999988776679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCc
Q psy14917 241 IRARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGE 315 (407)
Q Consensus 241 ~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I-----~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~ 315 (407)
+.++|++|+.+++++|++.|+|+++.|++| +|.++|||++-+|+|+..+.++|+|.+++..|+.|+.+++.++++
T Consensus 270 ilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d 349 (534)
T KOG0358|consen 270 ILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTAD 349 (534)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChh
Confidence 999999999999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeeeeEEEEE-ecCeeEEEEECCCC-CCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy14917 316 ESFEASSLGEAAEVVQTQ-VCDDELILINGPKA-RTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAV 393 (407)
Q Consensus 316 ~~~~~~~lG~~~~v~~~~-~g~~~~~~~~~~~~-~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~ 393 (407)
. +|+++.+++.. -|+.+++.+.++.+ ...|||++||++.-+++|.+|++|||+|++|.+++.+.++||||+.
T Consensus 350 ~------Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGap 423 (534)
T KOG0358|consen 350 K------LGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAP 423 (534)
T ss_pred h------cCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCc
Confidence 8 99999999984 45669999999887 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC
Q psy14917 394 EAALSIYLENFATT 407 (407)
Q Consensus 394 E~~la~~l~~~a~~ 407 (407)
|+++|..|.++|++
T Consensus 424 Eieia~~L~~~a~t 437 (534)
T KOG0358|consen 424 EIEIALRLSALART 437 (534)
T ss_pred chHHHHHHHHHHhh
Confidence 99999999998864
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.5e-82 Score=641.06 Aligned_cols=358 Identities=34% Similarity=0.574 Sum_probs=339.8
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||.+++++++|||||+|++|||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++|+++||+
T Consensus 23 ~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~ 102 (480)
T cd03337 23 QAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILA 102 (480)
T ss_pred HHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+.+.|.++++|+++||+.+.|.+.|++++++|+..++++
T Consensus 103 ~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~ 181 (480)
T cd03337 103 VAEPFLERGIHPTVIIKAYRKALEDALKILEEI-SIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVE 181 (480)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999 9998877899999999999999999999999999999999999865
Q ss_pred ccCCCccccCC-ceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 161 EKSGNVTYPIK-AINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 161 ~~~~~~~~~~~-~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
....+..+|.+ +|+|++++||+++||++++|++|++++.++.||++++||||++++++|++
T Consensus 182 ~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~------------------ 243 (480)
T cd03337 182 ENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY------------------ 243 (480)
T ss_pred cCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce------------------
Confidence 32111235544 59999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccC
Q psy14917 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFE 319 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~ 319 (407)
+|+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++
T Consensus 244 -----------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~--- 297 (480)
T cd03337 244 -----------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESD--- 297 (480)
T ss_pred -----------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHH---
Confidence 999999999999999999999999999999999999999999999999999887
Q ss_pred CCCcee-eeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHH
Q psy14917 320 ASSLGE-AAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALS 398 (407)
Q Consensus 320 ~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la 398 (407)
+|+ |+.+++..+|+++|++|++|+++++|||+|||+++.+++|+||+++||++++++++++|++||||||+|++||
T Consensus 298 ---LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls 374 (480)
T cd03337 298 ---VGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVS 374 (480)
T ss_pred ---cCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHH
Confidence 999 6777878889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy14917 399 IYLENFAT 406 (407)
Q Consensus 399 ~~l~~~a~ 406 (407)
++|+++++
T Consensus 375 ~~l~~~~~ 382 (480)
T cd03337 375 HALSEKAK 382 (480)
T ss_pred HHHHHHhh
Confidence 99999875
No 21
>KOG0360|consensus
Probab=100.00 E-value=1.3e-82 Score=600.21 Aligned_cols=406 Identities=76% Similarity=1.096 Sum_probs=393.7
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.|+.+++++++|||||-|+|||++|+.|++.+||||+|||+.|.++||++++|++.++.||+++|||||++++++++||+
T Consensus 26 ~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~ 105 (545)
T KOG0360|consen 26 MAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLK 105 (545)
T ss_pred HHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCCceEEEEEEHHhhh
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++.+|+..++||.+|++||+.|+..+++++.+.+++++|...+..|.++++|+++||+++...++|++++++|+..+.-.
T Consensus 106 ~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~ 185 (545)
T KOG0360|consen 106 NADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKIL 185 (545)
T ss_pred hHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999998768899999999999999999999999999999999999999998766
Q ss_pred ccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHH
Q psy14917 161 EKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240 (407)
Q Consensus 161 ~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~ 240 (407)
..+|+..++.+.|+|.|..|.+..||.+++|+.++...+...||++++++||+++++.|+..+.++...+.+.+++.+++
T Consensus 186 ~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ 265 (545)
T KOG0360|consen 186 DINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQ 265 (545)
T ss_pred ccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEecccccccccccceEEEcChHHHHH
Confidence 55676678889999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccCC
Q psy14917 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEA 320 (407)
Q Consensus 241 ~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~~ 320 (407)
+++.|....++.+++|...|+|+|+++++|||..++||.++|++++||+++++|++|+++|||++++++.++..+++|++
T Consensus 266 ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~ 345 (545)
T KOG0360|consen 266 IRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEP 345 (545)
T ss_pred HHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHH
Q psy14917 321 SSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIY 400 (407)
Q Consensus 321 ~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~ 400 (407)
+++|+|+.|.+.+||++.++++.+.+.. .++|+|||++.+.+||++|++|||+++++..++.+++||||||+|.+|+.+
T Consensus 346 ~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~y 424 (545)
T KOG0360|consen 346 ASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIY 424 (545)
T ss_pred hhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHH
Confidence 9999999999999999999999998877 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcC
Q psy14917 401 LENFATT 407 (407)
Q Consensus 401 l~~~a~~ 407 (407)
|+.||.+
T Consensus 425 le~~a~s 431 (545)
T KOG0360|consen 425 LENFATS 431 (545)
T ss_pred HHhhccc
Confidence 9999864
No 22
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=4e-79 Score=624.02 Aligned_cols=385 Identities=42% Similarity=0.663 Sum_probs=367.4
Q ss_pred HHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHH
Q psy14917 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADEL 85 (407)
Q Consensus 6 l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~~~~~l 85 (407)
|++++++||||+|++|||+++.|++++||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcccccCCC
Q psy14917 86 VKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGN 165 (407)
Q Consensus 86 i~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~~~~~~ 165 (407)
+++|+||..|++||+.|++.++++|+++ +++++..+ +.|.++++|++++|+.+.|.++|++++++|+..+...
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~-s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~----- 153 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKI-SIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN----- 153 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHH-SEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT-----
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhh-hccccccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc-----
Confidence 9999999999999999999999999999 88875333 8999999999999999999999999999999444321
Q ss_pred ccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHHHHHHH
Q psy14917 166 VTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARE 245 (407)
Q Consensus 166 ~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~~~~~E 245 (407)
++.++++++++.|++++||++++|++|++.+.+++||+++++|||++++++|+++++ .+.++.+++.++++++.++|
T Consensus 154 --~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e 230 (485)
T PF00118_consen 154 --FDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQE 230 (485)
T ss_dssp --HHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHH
T ss_pred --ccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhh
Confidence 566689999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccCCCCcee
Q psy14917 246 SDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGE 325 (407)
Q Consensus 246 ~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~~~~lG~ 325 (407)
+++++++++++.+.|+++|+++++|++.++++|.++||.++++++.++|++|+++|||.++++++++++++ +|+
T Consensus 231 ~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~------lG~ 304 (485)
T PF00118_consen 231 KKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDED------LGF 304 (485)
T ss_dssp HHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGG------SEE
T ss_pred hhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchh------hhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876 999
Q ss_pred eeeEEEEEecCeeEEEEE--CCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHh
Q psy14917 326 AAEVVQTQVCDDELILIN--GPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLEN 403 (407)
Q Consensus 326 ~~~v~~~~~g~~~~~~~~--~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~ 403 (407)
|+.++++.+++++|++|+ +|..++.+||+|||+++.+++|.||+++||+++++++++++++|||||++|++|+++|++
T Consensus 305 ~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~ 384 (485)
T PF00118_consen 305 CKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRK 384 (485)
T ss_dssp EEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHH
Confidence 999999999999999999 688899999999999999999999999999999999999999999999999999999998
Q ss_pred hhc
Q psy14917 404 FAT 406 (407)
Q Consensus 404 ~a~ 406 (407)
+++
T Consensus 385 ~~~ 387 (485)
T PF00118_consen 385 YAK 387 (485)
T ss_dssp HHH
T ss_pred hhh
Confidence 875
No 23
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.5e-79 Score=614.76 Aligned_cols=355 Identities=33% Similarity=0.565 Sum_probs=336.0
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+||.+|++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++||+
T Consensus 15 ~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~ 94 (472)
T cd03341 15 EACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLE 94 (472)
T ss_pred HHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhcccc-C-CCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTIS-V-DELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIK 158 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~-~-~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~ 158 (407)
++.+++++|+||+.|++||+.|++.++++|+++ +++ + +..+.+.+.++++|+++||..+ +.++|++++++|+..++
T Consensus 95 ~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~ 172 (472)
T cd03341 95 KAEELLRMGLHPSEIIEGYEKALKKALEILEEL-VVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSPLVAEACISVL 172 (472)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 765 4 4467889999999999999986 69999999999999998
Q ss_pred ccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHH
Q psy14917 159 ITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~ 238 (407)
++.. + .++.++|+|++++|++++||++++|++|++.+. .++++++||||++++++|++
T Consensus 173 ~~~~-~--~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~----------------- 230 (472)
T cd03341 173 PENI-G--NFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI----------------- 230 (472)
T ss_pred hccC-C--cCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC-----------------
Confidence 6531 2 478889999999999999999999999988765 35688999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCcccc
Q psy14917 239 DGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESF 318 (407)
Q Consensus 239 ~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~ 318 (407)
|+++|+++++|++.+++||+++||++++++++++|+|||++|||+++++++++++++
T Consensus 231 ---------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~-- 287 (472)
T cd03341 231 ---------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEE-- 287 (472)
T ss_pred ---------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhH--
Confidence 899999999999999999999999999999999999999999999999999988887
Q ss_pred CCCCceeeeeEEEEEecCeeEEEEECCCC-CCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy14917 319 EASSLGEAAEVVQTQVCDDELILINGPKA-RTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAAL 397 (407)
Q Consensus 319 ~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~l 397 (407)
+|+|+.|++.++|+++|++|++|++ +++|||+|||+++++++|.||+++||++++++++++|++||||||+|+++
T Consensus 288 ----lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~l 363 (472)
T cd03341 288 ----IGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIEL 363 (472)
T ss_pred ----CCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHH
Confidence 9999999999999999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy14917 398 SIYLENFAT 406 (407)
Q Consensus 398 a~~l~~~a~ 406 (407)
+++|+++++
T Consensus 364 s~~l~~~~~ 372 (472)
T cd03341 364 AKKLKEYGE 372 (472)
T ss_pred HHHHHHHhh
Confidence 999998864
No 24
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.3e-79 Score=616.05 Aligned_cols=354 Identities=46% Similarity=0.697 Sum_probs=341.9
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+||..++++++|||||+|++|||+++.|++++||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++
T Consensus 15 ~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~ 94 (464)
T cd00309 15 NAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLK 94 (464)
T ss_pred HHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++.+++++|+||+.|++||+.|++.++++|+++ +++++..+.+.|.++++|+++||+.+.|++++++++++|+..++++
T Consensus 95 ~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~ 173 (464)
T cd00309 95 EAEKLLAAGIHPTEIIRGYEKAVEKALEILKEI-AVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKE 173 (464)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999 9987778899999999999999999999999999999999999874
Q ss_pred ccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHH
Q psy14917 161 EKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240 (407)
Q Consensus 161 ~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~ 240 (407)
.. .++.++|+|++++||++.||++++|++|++++.++.|++.++||||++++++|++
T Consensus 174 ~~----~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~------------------- 230 (464)
T cd00309 174 NG----DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY------------------- 230 (464)
T ss_pred cC----ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce-------------------
Confidence 32 4677899999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccCC
Q psy14917 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEA 320 (407)
Q Consensus 241 ~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~~ 320 (407)
+|+++++|++.+++||.++||.+++++++++|+|||++|||+++++++++++.+
T Consensus 231 ----------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~---- 284 (464)
T cd00309 231 ----------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPED---- 284 (464)
T ss_pred ----------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCccc----
Confidence 999999999999999999999999999999999999999999999999888877
Q ss_pred CCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHH
Q psy14917 321 SSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIY 400 (407)
Q Consensus 321 ~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~ 400 (407)
+|+|+.+++.++|+++|++|++|+++++|||+|||+++.+++|+||+++||++++++++++|++||||||+|+++|++
T Consensus 285 --lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~ 362 (464)
T cd00309 285 --LGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKA 362 (464)
T ss_pred --CccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHH
Confidence 999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy14917 401 LENFAT 406 (407)
Q Consensus 401 l~~~a~ 406 (407)
|+++++
T Consensus 363 L~~~~~ 368 (464)
T cd00309 363 LEELAK 368 (464)
T ss_pred HHHHhc
Confidence 998875
No 25
>KOG0363|consensus
Probab=100.00 E-value=4.7e-79 Score=559.45 Aligned_cols=390 Identities=38% Similarity=0.597 Sum_probs=370.0
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcC--CCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDD--IGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELL 79 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll 79 (407)
++..+++++||||||+||+||++.. .|.+.+||||+|||+++.+++|+|+++++.++.||+++|||||||.+|+++||
T Consensus 26 GaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLl 105 (527)
T KOG0363|consen 26 GAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELL 105 (527)
T ss_pred HHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheeccccccccccCCCceehHHHHHHHH
Confidence 4567899999999999999999875 47799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccC---CCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 80 KNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISV---DELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 80 ~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~---~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
++|.+|+.+.+||+.|+.|||.|.+.|.+.|.+. ++.. ....++.|.++++|.++||+.++..++|++++++|+.+
T Consensus 106 reAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~-s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~r 184 (527)
T KOG0363|consen 106 REAEKLVNQKIHPQTIISGYRMATAAALEALTKS-SIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLR 184 (527)
T ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHh-hhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 6532 12348899999999999999999999999999999999
Q ss_pred hcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccc-cCeEEEecCH
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMK-LGVEVLVNDP 235 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~-~~~~~~i~~~ 235 (407)
+... -|++.|+|+|..||++.||+|-+|+++++.+-. +.|++++|+||++-|.+++.+|.+ +.+.+.+.+.
T Consensus 185 LkGs-------~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~ 256 (527)
T KOG0363|consen 185 LKGS-------TNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDST 256 (527)
T ss_pred hcCC-------CCccceeeehhcCCccccccccccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecch
Confidence 8753 257799999999999999999999999998875 579999999999999999999988 5889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCc
Q psy14917 236 EKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGE 315 (407)
Q Consensus 236 ~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~ 315 (407)
..+.++...|++.++.++++|.++|+|+.+...-|.++-.|+|.+.||+.+...+.+-+||++.+||+.|++.++++...
T Consensus 257 ~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~ 336 (527)
T KOG0363|consen 257 AKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELV 336 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHH
Q psy14917 316 ESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEA 395 (407)
Q Consensus 316 ~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~ 395 (407)
+ +|+|+.+++..+|++++++|+||+....|||+|||++++++||.||++|||+|++...+++++++.||||.||
T Consensus 337 k------lG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm 410 (527)
T KOG0363|consen 337 K------LGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEM 410 (527)
T ss_pred c------cccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHH
Confidence 8 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy14917 396 ALSIYLENFAT 406 (407)
Q Consensus 396 ~la~~l~~~a~ 406 (407)
.+|..+.++|.
T Consensus 411 ~Ma~av~~~A~ 421 (527)
T KOG0363|consen 411 LMAKAVDKEAQ 421 (527)
T ss_pred HHHHHHHHHHh
Confidence 99999998885
No 26
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-77 Score=603.43 Aligned_cols=387 Identities=38% Similarity=0.560 Sum_probs=370.8
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKN 81 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~~ 81 (407)
|+..+++++|+||||+||+|||+++.|+++|||||+||+++|+++||.|+|+++++++||+++||||||++||+++||++
T Consensus 19 ~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDGTTtavVLa~all~e 98 (524)
T COG0459 19 AARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKE 98 (524)
T ss_pred HHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 78999999999999999999999997799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcccc
Q psy14917 82 ADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITE 161 (407)
Q Consensus 82 ~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~~ 161 (407)
+.+++++|+||+.|++||+.|.+.++++|++. +++++..+.+. +++.|+++||..+++ +++++++++|+.+++...
T Consensus 99 a~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~-a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~ 174 (524)
T COG0459 99 AEKLIAAGIHPTVIKRGYRLAVEKAVEELKEI-AKPVSDSEEEL--KIAITSVASKSANSD-EEIGELVVEAVEKVGKEQ 174 (524)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccCCcchhhh--hhhhheeeeeeccCh-HHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999 99886545444 999999999999887 999999999999998743
Q ss_pred cCCCccccCCceEEEEcCCCCCCCceeEeeEEEec-cccccccc-ccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 162 KSGNVTYPIKAINLLKAHGKSARESVLVQGYALNC-TVASQAMK-KKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 162 ~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~-~~~~~~~~-~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
. |++.|.+.+..|++..|+++++|++|++ ..+++.|| +.++||+|++++++|++.+++.+.++.+++..++.
T Consensus 175 ~------d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~ 248 (524)
T COG0459 175 S------DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLL 248 (524)
T ss_pred c------ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcceeEecCccHHH
Confidence 2 6779999999999999999999999999 66777889 89999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHHHHcCceEEEecChHHH-HHHHHHhCCeeccccCCCCCcc
Q psy14917 240 GIRARES-DITKERINKILATGAN-VILVSGGIDDLCLKYFVEAGAMAVRRVKKVDL-KRIAKATGASFLTSLSNMEGEE 316 (407)
Q Consensus 240 ~~~~~E~-~~l~~~v~~i~~~~~~-lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l-~~ia~~tGa~ii~~~~~l~~~~ 316 (407)
.+.++|+ +.+..++.++.+.++| +++++++|+|.+++||.+.+|++++++.++++ ++++++|||++++.++++++..
T Consensus 249 ~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~ 328 (524)
T COG0459 249 IIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIV 328 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEEeecccCceee
Confidence 9999999 9999999999999999 99999999999999999999999999999999 8999999999999999999887
Q ss_pred ccCCCCcee--eeeEEEEEecCeeEEEEECCCC--CCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCH
Q psy14917 317 SFEASSLGE--AAEVVQTQVCDDELILINGPKA--RTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGA 392 (407)
Q Consensus 317 ~~~~~~lG~--~~~v~~~~~g~~~~~~~~~~~~--~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~ 392 (407)
+|. |+.+++.++|++++.+|++|++ ++.|||++||+++.+++|.||+++|||+++|+++++|++|||||+
T Consensus 329 ------~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa 402 (524)
T COG0459 329 ------LGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGA 402 (524)
T ss_pred ------cCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCH
Confidence 999 9999999999999999999986 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy14917 393 VEAALSIYLENF 404 (407)
Q Consensus 393 ~E~~la~~l~~~ 404 (407)
+|+++|++|+++
T Consensus 403 ~e~~~a~~L~~~ 414 (524)
T COG0459 403 AEIEAALRLREY 414 (524)
T ss_pred HHHHHHHHHHhh
Confidence 999999999987
No 27
>KOG0364|consensus
Probab=100.00 E-value=7e-79 Score=569.80 Aligned_cols=396 Identities=31% Similarity=0.515 Sum_probs=383.4
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
+|++++++++++|+||..|.||+.++.|.+.+||||..||+++++.||+|+-+.+.+.+||+++||||||+++|++|+|.
T Consensus 26 ~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~ 105 (527)
T KOG0364|consen 26 QAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLN 105 (527)
T ss_pred hhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccccccCCceeeeeehHHHhh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhccc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT 160 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~ 160 (407)
++..++++|+||..|+++|..|++.++..+++. ++++|.++...+..++++++.+|+.+.|.+..++++.+|+..++.+
T Consensus 106 ~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~-~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~ 184 (527)
T KOG0364|consen 106 VAEPFLEEGIHPTVIIKAYIKALEDNIRALDKI-SIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVE 184 (527)
T ss_pred hcchhhhcCcchHHHHHHHHHHHHHHHHHHHhh-cccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999976
Q ss_pred ccCCCccccC-CceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917 161 EKSGNVTYPI-KAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239 (407)
Q Consensus 161 ~~~~~~~~~~-~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~ 239 (407)
+|. .+|+ ++.++.|++||.+.+|++++|+.+.++..||.|.+.++||||+|++|||+|.+.++++++.+...+++.
T Consensus 185 --~g~-e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~ 261 (527)
T KOG0364|consen 185 --NGR-EIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFT 261 (527)
T ss_pred --cCc-eechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccceeeeechhHH
Confidence 243 4664 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccC
Q psy14917 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFE 319 (407)
Q Consensus 240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~ 319 (407)
...+.|++++..+++.|....+++|++++++++.+++||.+.||++++++++.|-.|++++|||.++++.+++...+
T Consensus 262 r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~d--- 338 (527)
T KOG0364|consen 262 RILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERD--- 338 (527)
T ss_pred HHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcee-eeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHH
Q psy14917 320 ASSLGE-AAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALS 398 (407)
Q Consensus 320 ~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la 398 (407)
.|+ |+.|+..++|+++|.||..|+.|+.|||++|||++.+++|++|.++||+.+.|+.+.+|+++|||||+||.+|
T Consensus 339 ---vGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs 415 (527)
T KOG0364|consen 339 ---VGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVS 415 (527)
T ss_pred ---cCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHH
Confidence 995 7799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy14917 399 IYLENFAT 406 (407)
Q Consensus 399 ~~l~~~a~ 406 (407)
+.|++.+.
T Consensus 416 ~~L~qksa 423 (527)
T KOG0364|consen 416 HELRQKSA 423 (527)
T ss_pred HHHHHHHh
Confidence 99998654
No 28
>KOG0362|consensus
Probab=100.00 E-value=8.3e-72 Score=530.25 Aligned_cols=388 Identities=30% Similarity=0.495 Sum_probs=365.8
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK 80 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~ 80 (407)
.||+++++++||+|||+||+||++|+.|++.+|||.+||+++++++||+|+||+++++.|+++.||||+++|+|+++||+
T Consensus 33 ~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe 112 (537)
T KOG0362|consen 33 AAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLE 112 (537)
T ss_pred HHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccc-cC-CCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhc
Q psy14917 81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTI-SV-DELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIK 158 (407)
Q Consensus 81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~-~~-~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~ 158 (407)
+|++|+..|++|..|++||+.|.+.+.+.|+++ .+ .. |..|.+ ..+++++.+|.+.+ .+++++++++|...+.
T Consensus 113 ~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~l-v~~~~~d~~d~~---~~~rs~i~skq~~~-ed~l~~lVa~ac~si~ 187 (537)
T KOG0362|consen 113 QAEELIRMGLTPAEISEGYETATKEALEILPEL-VVQSIGDLEDKE---WALRSVIMSKQYGN-EDFLTKLVAKACVSIL 187 (537)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHH-HHHhcccccChH---HHHHHHHHHhhcch-HHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999988 42 22 224444 88999999998765 7899999999999999
Q ss_pred ccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHH
Q psy14917 159 ITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238 (407)
Q Consensus 159 ~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~ 238 (407)
+. . .|+.++|+++|+.|+++++|+++.|++|++.+... ++..+.+||++++||++...+++++++.+++++++
T Consensus 188 p~-~----~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~--v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el 260 (537)
T KOG0362|consen 188 PL-M----SFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGE--VKSAKDARVAVFACPFDIAQTETKGTVLLKNAKEL 260 (537)
T ss_pred cc-c----cccccceEEEEEecCCcccceeeEEEEeccccCCc--ccccccceeEEEecCCCcccccCcceeeecCcHhh
Confidence 86 2 28889999999999999999999999999998753 57888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCcccc
Q psy14917 239 DGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESF 318 (407)
Q Consensus 239 ~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~ 318 (407)
..|...|+..++..++.|...|+++|++.+.|++.+++||++.+|++++--++.||+|+++..||.+++++..+.+.+
T Consensus 261 ~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~-- 338 (537)
T KOG0362|consen 261 LNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEE-- 338 (537)
T ss_pred hhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCceeeeeEEEEEecCeeEEEEE-CCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy14917 319 EASSLGEAAEVVQTQVCDDELILIN-GPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAAL 397 (407)
Q Consensus 319 ~~~~lG~~~~v~~~~~g~~~~~~~~-~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~l 397 (407)
+|+|++|....+|+.+++.|. ++..++..|++|||++...+|+.||+++|++++.+...++++++||+|++|++|
T Consensus 339 ----lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieL 414 (537)
T KOG0362|consen 339 ----LGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIEL 414 (537)
T ss_pred ----ccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHH
Confidence 999999999999999988886 455788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy14917 398 SIYLENFAT 406 (407)
Q Consensus 398 a~~l~~~a~ 406 (407)
+..|.+++.
T Consensus 415 ak~i~~~g~ 423 (537)
T KOG0362|consen 415 AKQISSRGA 423 (537)
T ss_pred HHHHHHhcc
Confidence 999998874
No 29
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.4e-70 Score=558.62 Aligned_cols=349 Identities=22% Similarity=0.360 Sum_probs=318.5
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQDEEVGDGTTSVVIVAAE 77 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ 77 (407)
||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++|++++||||||+++|+++
T Consensus 18 ~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLage 97 (542)
T PRK12849 18 GVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQA 97 (542)
T ss_pred HHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHh
Q psy14917 78 LLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI 157 (407)
Q Consensus 78 ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v 157 (407)
||+++.+|+++|+||..|++||+.|++.++++|+++ +++++ +.+.|.++|+|+.+ +++++++++++|+..+
T Consensus 98 LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~-s~~~~--~~~~l~~va~ts~~------~~~~l~~lv~~Av~~v 168 (542)
T PRK12849 98 LVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKAL-ARPVS--GSEEIAQVATISAN------GDEEIGELIAEAMEKV 168 (542)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcC------ChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 98884 78889999999864 5899999999999998
Q ss_pred cccccCCCccccCCceEEEEcCCCCCCC-ceeEeeEEEeccccccc-------ccccccCceEEEEeecccccccccCeE
Q psy14917 158 KITEKSGNVTYPIKAINLLKAHGKSARE-SVLVQGYALNCTVASQA-------MKKKITNAKIACLDFSLQKAKMKLGVE 229 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~I~i~~~~G~~~~d-S~li~G~v~~~~~~~~~-------~~~~~~~~kI~l~~~~L~~~~~~~~~~ 229 (407)
+++ + .+.+. .|++.+| +++++|++|++++.+++ |++.++||+|+++++.+
T Consensus 169 ~~~---g-------~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i---------- 226 (542)
T PRK12849 169 GKD---G-------VITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI---------- 226 (542)
T ss_pred ccC---C-------cEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc----------
Confidence 753 2 23343 6888876 79999999999999885 47889999999999954
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CceEEEecC-----hHHHHHHH
Q psy14917 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEA------GAMAVRRVK-----KVDLKRIA 298 (407)
Q Consensus 230 ~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~------~I~~i~~v~-----~~~l~~ia 298 (407)
+++++ +.++++++.+.|+++||++++|++.++++|.++ +|+++++.+ +++|+|||
T Consensus 227 ---~~~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia 292 (542)
T PRK12849 227 ---SSLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIA 292 (542)
T ss_pred ---CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHH
Confidence 34555 456789999999999999999999999999999 999999887 55699999
Q ss_pred HHhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCC-------------------------
Q psy14917 299 KATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKAR------------------------- 348 (407)
Q Consensus 299 ~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------------------- 348 (407)
.+|||++++ +++++++++ ||+|+.|++.. +++++|++|+++
T Consensus 293 ~~tGa~~v~~~~~~~~~~~~~~~------LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~ 363 (542)
T PRK12849 293 ILTGGTVISEDLGLKLEEVTLDD------LGRAKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREK 363 (542)
T ss_pred HHhCCEEecccccCCcccCCHHH------CceeeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999 578888777 99999999754 788999998775
Q ss_pred ----------CeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhh
Q psy14917 349 ----------TAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFA 405 (407)
Q Consensus 349 ----------~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a 405 (407)
+.|||+|||+|+.+++|.+|+++||++++++++++| +||||||+|+++|.+|++++
T Consensus 364 l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~ 429 (542)
T PRK12849 364 LQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA 429 (542)
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh
Confidence 489999999999999999999999999999999998 99999999999999999876
No 30
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.3e-70 Score=553.66 Aligned_cols=351 Identities=23% Similarity=0.376 Sum_probs=321.2
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQDEEVGDGTTSVVIVAA 76 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGtt~~vlL~~ 76 (407)
.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|+++++++|++++||||||+++|++
T Consensus 15 ~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~ 94 (520)
T cd03344 15 RGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAR 94 (520)
T ss_pred HHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCCcchHHHHHH
Confidence 378999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 77 ELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 77 ~ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
+||+++.+++++|+||..|++||+.|.+.++++|+++ +++++ +.+.|.++|+|++++ ++++++++++|+..
T Consensus 95 ~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~-~~~i~--~~~~l~~va~ts~~~------~~~l~~lv~~A~~~ 165 (520)
T cd03344 95 AIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKL-SKPVK--TKEEIAQVATISANG------DEEIGELIAEAMEK 165 (520)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcCC------hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99885 788999999999975 78999999999998
Q ss_pred hcccccCCCccccCCceEEEEcCCCCCCC-ceeEeeEEEecccccccc---c----ccccCceEEEEeecccccccccCe
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSARE-SVLVQGYALNCTVASQAM---K----KKITNAKIACLDFSLQKAKMKLGV 228 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~~d-S~li~G~v~~~~~~~~~~---~----~~~~~~kI~l~~~~L~~~~~~~~~ 228 (407)
++++ + .|.+ .+|++..| +++++|++|++++.+++| | +.++||+|++++++|+
T Consensus 166 v~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~-------- 225 (520)
T cd03344 166 VGKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKIS-------- 225 (520)
T ss_pred hccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCC--------
Confidence 8742 2 2444 48999988 799999999999998865 3 5789999999999953
Q ss_pred EEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCc------eEEEec-----ChHHHHHH
Q psy14917 229 EVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA------MAVRRV-----KKVDLKRI 297 (407)
Q Consensus 229 ~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I------~~i~~v-----~~~~l~~i 297 (407)
++++ +.++++++.+.|+++||++++|++.++++|.+++| +++++. ++++|+||
T Consensus 226 -----~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~l 289 (520)
T cd03344 226 -----SIQE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDI 289 (520)
T ss_pred -----CHHH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHH
Confidence 4555 56678999999999999999999999999999999 787755 89999999
Q ss_pred HHHhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCC------------------------
Q psy14917 298 AKATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKAR------------------------ 348 (407)
Q Consensus 298 a~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------------------ 348 (407)
|++|||++++ +++++++++ +|+|+.|++.+ ++++++++|+++
T Consensus 290 a~~tGa~~~~~~~~~~~~~~~~~~------LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 360 (520)
T cd03344 290 AILTGGTVISEELGLKLEDVTLED------LGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKE 360 (520)
T ss_pred HHHhCCEEecccccCCcccCCHHH------CCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999 677777776 99999999866 688999988765
Q ss_pred -----------CeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhhc
Q psy14917 349 -----------TAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406 (407)
Q Consensus 349 -----------~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a~ 406 (407)
+.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|+++++
T Consensus 361 ~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~ 428 (520)
T cd03344 361 KLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA 428 (520)
T ss_pred HHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc
Confidence 599999999999999999999999999999999998 999999999999999998863
No 31
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.4e-70 Score=554.98 Aligned_cols=350 Identities=23% Similarity=0.381 Sum_probs=322.9
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQDEEVGDGTTSVVIVAA 76 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGtt~~vlL~~ 76 (407)
.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++|| .|+|+++++++|++++||||||+++|++
T Consensus 17 ~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDGTTtvviLa~ 96 (542)
T PRK00013 17 RGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQ 96 (542)
T ss_pred HHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCccchHHHHHH
Confidence 378999999999999999999999999999999999999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 77 ELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 77 ~ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
+||+++.+++++|+||+.|++||+.|++.++++|+++ +++++ +.+.|.++|+|+++ +++.+++++++|+..
T Consensus 97 ~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-a~~~~--~~~~l~~va~ts~~------~~~~ls~lv~~Av~~ 167 (542)
T PRK00013 97 AIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKI-SKPVE--DKEEIAQVATISAN------GDEEIGKLIAEAMEK 167 (542)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHhccc------chHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99885 78889999998874 589999999999999
Q ss_pred hcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccc-------cccccCceEEEEeecccccccccCeE
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAM-------KKKITNAKIACLDFSLQKAKMKLGVE 229 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~ 229 (407)
++++ + .|.|.+.+| ...+|++++|++|++++.+++| ++.++||+|+++|+.
T Consensus 168 v~~~---g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~----------- 225 (542)
T PRK00013 168 VGKE---G-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKK----------- 225 (542)
T ss_pred hCcC---C-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCc-----------
Confidence 8752 2 378888777 7789999999999999998865 788999999999996
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC------ceEEEecC-----hHHHHHHH
Q psy14917 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAG------AMAVRRVK-----KVDLKRIA 298 (407)
Q Consensus 230 ~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~------I~~i~~v~-----~~~l~~ia 298 (407)
++++++ +.++++++.+.|+++||++++|++.++++|..++ |+++++.+ +++|+|||
T Consensus 226 --i~~~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia 292 (542)
T PRK00013 226 --ISNIQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIA 292 (542)
T ss_pred --cCCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHH
Confidence 345555 4577999999999999999999999999999997 89999886 88999999
Q ss_pred HHhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCCC------------------------
Q psy14917 299 KATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART------------------------ 349 (407)
Q Consensus 299 ~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~------------------------ 349 (407)
++|||++++ +++++++++ ||+|+.+++.. ++|++|++|.+++
T Consensus 293 ~~tG~~~i~~~~~~~~~~~~~~~------LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 363 (542)
T PRK00013 293 ILTGGTVISEELGLKLEDATLED------LGQAKKVVVTK---DNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREK 363 (542)
T ss_pred HHcCCEEecccccCCcccCCHHH------CCeeeEEEEec---CEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 999999999 788888887 99999999854 7899999987765
Q ss_pred -----------eEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhh
Q psy14917 350 -----------AASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENF 404 (407)
Q Consensus 350 -----------~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~ 404 (407)
.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|+++
T Consensus 364 l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~ 428 (542)
T PRK00013 364 LQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL 428 (542)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999997 9999999999999999876
No 32
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.3e-69 Score=555.69 Aligned_cols=350 Identities=23% Similarity=0.376 Sum_probs=320.4
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQDEEVGDGTTSVVIVAAE 77 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ 77 (407)
||..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|+++++++|++++||||||+++|+++
T Consensus 30 ~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~ 109 (555)
T PTZ00114 30 GIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARA 109 (555)
T ss_pred HHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccccCCcccHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHh
Q psy14917 78 LLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI 157 (407)
Q Consensus 78 ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v 157 (407)
||+++.+++++|+||..|++||+.|++.++++|+++ +++++ +.+.|.++|+|++++ ++.+++++++|+..+
T Consensus 110 LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~-s~~v~--~~~~l~~va~ts~~~------~~~l~~li~eAv~~v 180 (555)
T PTZ00114 110 IFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQ-SRPVK--TKEDILNVATISANG------DVEIGSLIADAMDKV 180 (555)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHHcCC------hHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 99884 788899999999864 789999999999998
Q ss_pred cccccCCCccccCCceEEEEcCCCCCCCc-eeEeeEEEecccccccc-------cccccCceEEEEeecccccccccCeE
Q psy14917 158 KITEKSGNVTYPIKAINLLKAHGKSARES-VLVQGYALNCTVASQAM-------KKKITNAKIACLDFSLQKAKMKLGVE 229 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~I~i~~~~G~~~~dS-~li~G~v~~~~~~~~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~ 229 (407)
+++ + .|.+.+|+++.|| ++++|++|++++.+++| ++.+++|+|++++++|+.
T Consensus 181 g~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~-------- 240 (555)
T PTZ00114 181 GKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISS-------- 240 (555)
T ss_pred CcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCC--------
Confidence 742 2 2566789999998 89999999999998865 788999999999999872
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC------ceEEEe-----cChHHHHHHH
Q psy14917 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAG------AMAVRR-----VKKVDLKRIA 298 (407)
Q Consensus 230 ~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~------I~~i~~-----v~~~~l~~ia 298 (407)
+++ +.++++++.+.|++++|++++|++.++++|..++ |.++++ +++++|+|||
T Consensus 241 -----~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la 304 (555)
T PTZ00114 241 -----IQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIA 304 (555)
T ss_pred -----HHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHH
Confidence 333 6788899999999999999999999999999996 889976 7789999999
Q ss_pred HHhCCeecccc------CCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCC--------------------------
Q psy14917 299 KATGASFLTSL------SNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPK-------------------------- 346 (407)
Q Consensus 299 ~~tGa~ii~~~------~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~-------------------------- 346 (407)
.+|||+++++. +++++++ +|+|+.|++.+ +++++|++|.
T Consensus 305 ~~tG~~~i~~~~~~~~l~~~~~~~------LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~ 375 (555)
T PTZ00114 305 VLTGATVVSEDNVGLKLDDFDPSM------LGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKE 375 (555)
T ss_pred HHhCCEEecccccccCcccCCHHH------cCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999997 5666655 99999999987 4566776665
Q ss_pred ---------CCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhhc
Q psy14917 347 ---------ARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406 (407)
Q Consensus 347 ---------~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a~ 406 (407)
.++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|..|++++.
T Consensus 376 ~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~ 443 (555)
T PTZ00114 376 KLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEE 443 (555)
T ss_pred HHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhh
Confidence 66899999999999999999999999999999999988 999999999999999998863
No 33
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.1e-69 Score=552.15 Aligned_cols=352 Identities=22% Similarity=0.360 Sum_probs=320.7
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQDEEVGDGTTSVVIVAA 76 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGtt~~vlL~~ 76 (407)
.|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++|++++||||||+++|++
T Consensus 18 ~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~ 97 (541)
T PRK12851 18 RGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQ 97 (541)
T ss_pred HHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHH
Confidence 378999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 77 ELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 77 ~ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
+||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++ +.+.|.+++++++ ++++.+++++++|+..
T Consensus 98 ~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~-s~~~~--~~~~l~~va~~s~------~~~~~l~~lv~~Av~~ 168 (541)
T PRK12851 98 AIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKAN-ARPVT--TNAEIAQVATISA------NGDAEIGRLVAEAMEK 168 (541)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhc------cChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 98885 6788999998876 3689999999999999
Q ss_pred hcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEeccccccc-------ccccccCceEEEEeecccccccccCeE
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQA-------MKKKITNAKIACLDFSLQKAKMKLGVE 229 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~-------~~~~~~~~kI~l~~~~L~~~~~~~~~~ 229 (407)
++++ + .+++.+.. +...++++++|++|++++.+++ |++.++||+|+++|++++
T Consensus 169 vg~~---g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~--------- 228 (541)
T PRK12851 169 VGNE---G-------VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS--------- 228 (541)
T ss_pred hccc---C-------ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC---------
Confidence 8753 2 34665555 5677899999999999999885 889999999999999843
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCc------eEEEe-----cChHHHHHHH
Q psy14917 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA------MAVRR-----VKKVDLKRIA 298 (407)
Q Consensus 230 ~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I------~~i~~-----v~~~~l~~ia 298 (407)
+.++ +.++++++.+.|+++||++++|++.++++|..++| +++++ +++++|+|||
T Consensus 229 ----~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia 293 (541)
T PRK12851 229 ----NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIA 293 (541)
T ss_pred ----cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHH
Confidence 2222 77889999999999999999999999999999997 77775 9999999999
Q ss_pred HHhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCCC------------------------
Q psy14917 299 KATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART------------------------ 349 (407)
Q Consensus 299 ~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~------------------------ 349 (407)
.+|||.+++ +++++++++ ||+|+.|++.+ ++|++|.+|+++.
T Consensus 294 ~~tGa~~i~~~~~~~~~~~~~~~------LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 364 (541)
T PRK12851 294 ILTGGTVISEDLGIKLENVTLEQ------LGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREK 364 (541)
T ss_pred HHhCCEEeccCCCCCcCcCCHHH------cCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999 677777776 99999999866 7889999987653
Q ss_pred -----------eEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhhc
Q psy14917 350 -----------AASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406 (407)
Q Consensus 350 -----------~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a~ 406 (407)
.+||+|||+|+.+++|.||+++||++++++++++| +|||||++|+++|..|++++.
T Consensus 365 l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~ 431 (541)
T PRK12851 365 LQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLET 431 (541)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999998 999999999999999998864
No 34
>KOG0359|consensus
Probab=100.00 E-value=1.5e-71 Score=519.75 Aligned_cols=391 Identities=28% Similarity=0.477 Sum_probs=375.3
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKN 81 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~~ 81 (407)
++..+.+++++.+||.|..||++++.|++.+|.||.+++.+|++.||-+-++..++.+||+..|||||++|+|+++|+++
T Consensus 25 ~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~VlligEllkq 104 (520)
T KOG0359|consen 25 AAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQ 104 (520)
T ss_pred cccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcccc
Q psy14917 82 ADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITE 161 (407)
Q Consensus 82 ~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~~ 161 (407)
|...+..|+||..|.+||+.|.+.++++|+.. +.++ +++.|..+++|++.+|......+.+++++++|+..+.+..
T Consensus 105 a~~~i~eGlhprii~~gfe~a~~~~l~~L~k~-~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~ 180 (520)
T KOG0359|consen 105 ADRYISEGLHPRIITEGFEAAKNKALEFLEKV-SREV---DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQE 180 (520)
T ss_pred HHHHhhcCCCcchhhhHHHHHHHHHHhhhhcc-ccch---hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCC
Confidence 99999999999999999999999999999977 7766 7999999999999999999889999999999999988322
Q ss_pred cCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHHH
Q psy14917 162 KSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGI 241 (407)
Q Consensus 162 ~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~~ 241 (407)
..+|+..++++++..++..|+.+++|++++++..||.||++.+|+.|+++|.+|||+|++.++.+-+++.+|.+.+
T Consensus 181 ----~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L 256 (520)
T KOG0359|consen 181 ----EPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVL 256 (520)
T ss_pred ----CCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhccchhHHHHH
Confidence 2588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCc----EEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccc
Q psy14917 242 RARESDITKERINKILATGAN----VILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEES 317 (407)
Q Consensus 242 ~~~E~~~l~~~v~~i~~~~~~----lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~ 317 (407)
...|++++.+.+.+|++++.. +||.|++|||..++.|+++||++++|.++..|||+..+||+..++++++++|+.
T Consensus 257 ~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~- 335 (520)
T KOG0359|consen 257 VLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDY- 335 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecccccCChhh-
Confidence 999999999999999998765 789999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy14917 318 FEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAAL 397 (407)
Q Consensus 318 ~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~l 397 (407)
+|+|+.+++.++|+++|+|+++|++|+.|||+++||+++.+.+.|.+++|+++++++.++|+.++||+|++|.++
T Consensus 336 -----LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~ 410 (520)
T KOG0359|consen 336 -----LGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVAL 410 (520)
T ss_pred -----ccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy14917 398 SIYLENFAT 406 (407)
Q Consensus 398 a~~l~~~a~ 406 (407)
+++|++.-+
T Consensus 411 ~~~lr~~k~ 419 (520)
T KOG0359|consen 411 GRHLRESKK 419 (520)
T ss_pred HHHHHHhhh
Confidence 999996543
No 35
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=6.2e-69 Score=547.85 Aligned_cols=347 Identities=23% Similarity=0.363 Sum_probs=316.5
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQDEEVGDGTTSVVIVAAE 77 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ 77 (407)
|+.+++++++|||||+||+|||+++.|+++|||||+||+++|++.|| .++|+++++++|++++||||||+++|+++
T Consensus 17 ~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~ 96 (524)
T TIGR02348 17 GVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQA 96 (524)
T ss_pred HHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCCcchHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHh
Q psy14917 78 LLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI 157 (407)
Q Consensus 78 ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v 157 (407)
||+++.+++++|+||..|++||+.|++.++++|+++ +++++ +.+.|.++++++.+ +++.+++++++|+..+
T Consensus 97 Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~-s~~~~--~~~~l~~va~ts~~------~~~~l~~lv~~A~~~v 167 (524)
T TIGR02348 97 IVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKL-SKPVK--GKKEIAQVATISAN------NDEEIGSLIAEAMEKV 167 (524)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcc------ChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 99885 78889999998875 4899999999999998
Q ss_pred cccccCCCccccCCceEEEEcCCCCC-CCceeEeeEEEecccccccc-------cccccCceEEEEeecccccccccCeE
Q psy14917 158 KITEKSGNVTYPIKAINLLKAHGKSA-RESVLVQGYALNCTVASQAM-------KKKITNAKIACLDFSLQKAKMKLGVE 229 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~I~i~~~~G~~~-~dS~li~G~v~~~~~~~~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~ 229 (407)
+++ + .|.+.. |+.. .+|++++|++|++++.+++| ++.++||+|+++++.++
T Consensus 168 ~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~--------- 226 (524)
T TIGR02348 168 GKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKIS--------- 226 (524)
T ss_pred CcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcC---------
Confidence 753 2 244443 5555 67999999999999998875 78899999999999643
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CceEEEecCh-----HHHHHHH
Q psy14917 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEA------GAMAVRRVKK-----VDLKRIA 298 (407)
Q Consensus 230 ~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~------~I~~i~~v~~-----~~l~~ia 298 (407)
++++ +.++++++.+.|+++|+++++|++.++++|..+ +|+++++.+. ++|+|||
T Consensus 227 ----~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia 291 (524)
T TIGR02348 227 ----NIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIA 291 (524)
T ss_pred ----CHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHH
Confidence 4555 578899999999999999999999999999987 8899987754 8999999
Q ss_pred HHhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCCC------------------------
Q psy14917 299 KATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART------------------------ 349 (407)
Q Consensus 299 ~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~------------------------ 349 (407)
++|||.+++ +++++++++ ||+|+.|++.. +++++|++|..++
T Consensus 292 ~~tG~~~i~~~~~~~~~~~~~~~------LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~ 362 (524)
T TIGR02348 292 ILTGGQVISEELGLKLEEVTLDD------LGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREK 362 (524)
T ss_pred HHhCCEEecccccCCcCcCCHHH------CCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999 788888877 99999999865 6889999886654
Q ss_pred -----------eEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHh
Q psy14917 350 -----------AASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLEN 403 (407)
Q Consensus 350 -----------~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~ 403 (407)
.+||+|||+|+.+++|.+|+++||++++|+++++| +|||||++|+++|.+|++
T Consensus 363 l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~ 426 (524)
T TIGR02348 363 LQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG 426 (524)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998 999999999999999987
No 36
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.6e-69 Score=549.34 Aligned_cols=350 Identities=22% Similarity=0.370 Sum_probs=317.0
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChH----HHHHHHHHHhhhhhcCCChhHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPA----ARVLVELAQLQDEEVGDGTTSVVIVAA 76 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGtt~~vlL~~ 76 (407)
.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|+++++++|++++||||||+++|++
T Consensus 18 ~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~ 97 (544)
T PRK12850 18 RGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQ 97 (544)
T ss_pred HHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCCcchHHHHHH
Confidence 3789999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 77 ELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 77 ~ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
+||+++.+|+++|+||..|++||+.|++.++++|+++ +.+++ +.+.|.+++++++++ ++.+++++++|+..
T Consensus 98 ~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~-s~~v~--~~~~l~~va~~s~~~------~~~l~~lv~eAv~~ 168 (544)
T PRK12850 98 AIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKI-AKKVT--SSKEIAQVATISANG------DESIGEMIAEAMDK 168 (544)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcCC------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 98884 788899999998764 78999999999999
Q ss_pred hcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccc-------cccccCceEEEEeecccccccccCeE
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAM-------KKKITNAKIACLDFSLQKAKMKLGVE 229 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~ 229 (407)
++++ + .++++. .+..| .++++++|++|++++.+++| ++.++||+|+++|+.++
T Consensus 169 vg~~---g--~i~v~~---~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~--------- 228 (544)
T PRK12850 169 VGKE---G--VITVEE---AKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKIS--------- 228 (544)
T ss_pred hccc---C--ceeeEE---ccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccC---------
Confidence 9753 2 133322 22333 58999999999999998865 78899999999999632
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCc------eEEEe-----cChHHHHHHH
Q psy14917 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA------MAVRR-----VKKVDLKRIA 298 (407)
Q Consensus 230 ~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I------~~i~~-----v~~~~l~~ia 298 (407)
+.++ +.++++++.+.|+++||++++|++.++++|..++| +++++ +++++|+|||
T Consensus 229 ----~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia 293 (544)
T PRK12850 229 ----NLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIA 293 (544)
T ss_pred ----CHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHH
Confidence 2222 78889999999999999999999999999999999 88887 9999999999
Q ss_pred HHhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCC-------------------------
Q psy14917 299 KATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKAR------------------------- 348 (407)
Q Consensus 299 ~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------------------- 348 (407)
++|||++++ +++++++++ ||+|+.|++.. ++|++|++|..+
T Consensus 294 ~~tG~~~i~~~~~~~~~~~~~~~------LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 364 (544)
T PRK12850 294 VLTGGQVISEDLGIKLENVTLDM------LGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREK 364 (544)
T ss_pred HHhCCEEeccccCCCcccCCHHH------cCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999 677777776 99999999765 788999988764
Q ss_pred ----------CeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhh
Q psy14917 349 ----------TAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENF 404 (407)
Q Consensus 349 ----------~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~ 404 (407)
+.+||+|||+|+.+++|.+|+++||++++++++++| +||||||+|+++|..|+++
T Consensus 365 l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~ 429 (544)
T PRK12850 365 LQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL 429 (544)
T ss_pred HHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc
Confidence 389999999999999999999999999999999997 9999999999999999876
No 37
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-67 Score=540.95 Aligned_cols=351 Identities=23% Similarity=0.356 Sum_probs=317.7
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccc----cChHHHHHHHHHHhhhhhcCCChhHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQDEEVGDGTTSVVIVAA 76 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~----~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~ 76 (407)
.|+..++++++|||||+||+|||+++.|+++|||||+||+++|++ +||.|+|+++++++|++++||||||+++|++
T Consensus 18 ~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDGTTtvvvLa~ 97 (545)
T PRK12852 18 RGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQ 97 (545)
T ss_pred HHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCCcchHHHHHH
Confidence 378999999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 77 ELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 77 ~ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
+||+++.+|+++|+||..|++||+.|++.++++|+++ +++++ +.+.+.++++++.++ ++.+++++++|+..
T Consensus 98 eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~-s~~v~--~~~~l~~va~~s~~~------~~~l~~li~eA~~~ 168 (545)
T PRK12852 98 AIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKR-AKPVA--SSAEIAQVGTISANG------DAAIGKMIAQAMQK 168 (545)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHHHhhhcCC------hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99885 456699999988764 78999999999999
Q ss_pred hcccccCCCccccCCceEEEEcCCCCC-CCceeEeeEEEeccccccc-------ccccccCceEEEEeecccccccccCe
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSA-RESVLVQGYALNCTVASQA-------MKKKITNAKIACLDFSLQKAKMKLGV 228 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~-~dS~li~G~v~~~~~~~~~-------~~~~~~~~kI~l~~~~L~~~~~~~~~ 228 (407)
++++ + .|.+. .|+.. .++++++|+.|++++.+++ |+..++||+|+++++.+
T Consensus 169 vg~~---g-------~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i--------- 227 (545)
T PRK12852 169 VGNE---G-------VITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL--------- 227 (545)
T ss_pred hccC---C-------ceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc---------
Confidence 9753 2 23333 37765 6999999999999999885 78889999999998753
Q ss_pred EEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CceEEEecC-----hHHHHHH
Q psy14917 229 EVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEA------GAMAVRRVK-----KVDLKRI 297 (407)
Q Consensus 229 ~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~------~I~~i~~v~-----~~~l~~i 297 (407)
++++ ++.++++.+.+.|+++||++++|++.++++|..+ +|+++++.+ +++|+||
T Consensus 228 ----~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~i 292 (545)
T PRK12852 228 ----SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDI 292 (545)
T ss_pred ----CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHH
Confidence 3333 3778899999999999999999999999999987 799998665 8999999
Q ss_pred HHHhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCC------------------------
Q psy14917 298 AKATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKAR------------------------ 348 (407)
Q Consensus 298 a~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------------------ 348 (407)
|.+|||++++ +++++++++ ||+|+.+++.. +++++|.+|..+
T Consensus 293 a~~tGa~~i~~~~~~~l~~~~~~~------lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (545)
T PRK12852 293 AILTGGQLISEDLGIKLENVTLKM------LGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDRE 363 (545)
T ss_pred HHhcCCEEEecCcCCCcCCCCHHH------CCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999 688888777 99999999876 578899888653
Q ss_pred -----------CeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhhc
Q psy14917 349 -----------TAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406 (407)
Q Consensus 349 -----------~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a~ 406 (407)
+.+||+|||+|+.+++|.||+++||++++++++++| +|||||++|+++|.+|++++.
T Consensus 364 ~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~ 431 (545)
T PRK12852 364 KLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINN 431 (545)
T ss_pred HHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999999999997 999999999999999998874
No 38
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=4e-67 Score=535.13 Aligned_cols=352 Identities=23% Similarity=0.315 Sum_probs=311.7
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHH----HHHHHHHhhhhhcCCChhHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAAR----VLVELAQLQDEEVGDGTTSVVIVAAE 77 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~----ll~~~~~~~~~~~GDGtt~~vlL~~~ 77 (407)
+|..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++ |+++++++|++++||||||+++|+++
T Consensus 18 g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~e 97 (529)
T CHL00093 18 GMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYA 97 (529)
T ss_pred HHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCCCCHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999995 88889999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHh
Q psy14917 78 LLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI 157 (407)
Q Consensus 78 ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v 157 (407)
||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++ +.+.|.++|+++++ +++.+++++++|+..+
T Consensus 98 LL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~-s~~v~--d~~~L~~VA~ts~~------~~~~l~~lv~eAv~~v 168 (529)
T CHL00093 98 IVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEY-ARPVE--DIQAITQVASISAG------NDEEVGSMIADAIEKV 168 (529)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CHHHHHHHHHHhcc------ChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 99885 78889999999876 5899999999999999
Q ss_pred cccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccc---cc----cccCceEEEEeecccccccccCeEE
Q psy14917 158 KITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAM---KK----KITNAKIACLDFSLQKAKMKLGVEV 230 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~---~~----~~~~~kI~l~~~~L~~~~~~~~~~~ 230 (407)
+++ + .|.+. ..++...++++++|++|++++.+++| ++ .++||+|++++++|++.+
T Consensus 169 g~~---g-------~i~~~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~------- 230 (529)
T CHL00093 169 GRE---G-------VISLE-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ------- 230 (529)
T ss_pred ccC---C-------ceeec-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH-------
Confidence 753 2 23332 12334567899999999999998865 44 489999999999999631
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHH--HH----cCceEEEecC-----hHHHHHHHH
Q psy14917 231 LVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYF--VE----AGAMAVRRVK-----KVDLKRIAK 299 (407)
Q Consensus 231 ~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l--~~----~~I~~i~~v~-----~~~l~~ia~ 299 (407)
..+.++++.+.+.++++||++++|++.+++.| ++ .+|+++++.+ +++|+|||.
T Consensus 231 ----------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~ 294 (529)
T CHL00093 231 ----------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAI 294 (529)
T ss_pred ----------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHH
Confidence 12788899999999999999999999777755 76 4899999984 488999999
Q ss_pred HhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEEC---------CCCC-----------------
Q psy14917 300 ATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQVCDDELILING---------PKAR----------------- 348 (407)
Q Consensus 300 ~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~---------~~~~----------------- 348 (407)
+|||++++ +++++++.+ +|+|+.|++.. +++++|++ |+..
T Consensus 295 ~tGa~~i~~~~~~~~~~~~~~~------LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 365 (529)
T CHL00093 295 LTGGQVITEDAGLSLETIQLDL------LGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQ 365 (529)
T ss_pred hhCCEEecccccCCcCCCCHHH------CCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 99999999 688888777 99999999865 67888874 3221
Q ss_pred --------CeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhhc
Q psy14917 349 --------TAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406 (407)
Q Consensus 349 --------~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a~ 406 (407)
..+||+|||+|+.+++|.+|+++||++++|+++++| +|||||++|+++|.+|+++|+
T Consensus 366 eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~ 430 (529)
T CHL00093 366 ERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAK 430 (529)
T ss_pred HHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhc
Confidence 488899999999999999999999999999999998 999999999999999999864
No 39
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=6.5e-66 Score=526.43 Aligned_cols=350 Identities=23% Similarity=0.349 Sum_probs=314.9
Q ss_pred ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhcccc----ChHHHHHHHHHHhhhhhcCCChhHHHHHHH
Q psy14917 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVE----HPAARVLVELAQLQDEEVGDGTTSVVIVAA 76 (407)
Q Consensus 1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~----hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~ 76 (407)
.|+..+++++++||||+||+|||+++.|+++|||||+||+++|++. ||.++|+++++++|++++||||||+++|++
T Consensus 18 ~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDGTTTvvvLa~ 97 (546)
T PRK14104 18 RGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQ 97 (546)
T ss_pred HHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCcccHHHHHHH
Confidence 3788999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q psy14917 77 ELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156 (407)
Q Consensus 77 ~ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~ 156 (407)
+||+++.+++++|+||+.|++||+.|++.++++|+++ +++++ +.+.+.++++++.++ ++.+++++++|+..
T Consensus 98 ~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-a~~v~--~~~~l~~va~~s~~~------d~~i~~lv~~Av~~ 168 (546)
T PRK14104 98 AIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKN-SKKVT--SNDEIAQVGTISANG------DAEIGKFLADAMKK 168 (546)
T ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHHHHHHhcC------chHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99885 456799999998775 47899999999999
Q ss_pred hcccccCCCccccCCceEEEEcCCCCC-CCceeEeeEEEecccccccc-------cccccCceEEEEeecccccccccCe
Q psy14917 157 IKITEKSGNVTYPIKAINLLKAHGKSA-RESVLVQGYALNCTVASQAM-------KKKITNAKIACLDFSLQKAKMKLGV 228 (407)
Q Consensus 157 v~~~~~~~~~~~~~~~I~i~~~~G~~~-~dS~li~G~v~~~~~~~~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~ 228 (407)
++++ + .|.+... +.. .++++++|++|++++.+|+| +..+++|+|++++..
T Consensus 169 vg~~---g-------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~---------- 226 (546)
T PRK14104 169 VGNE---G-------VITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK---------- 226 (546)
T ss_pred hccC---C-------ceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh----------
Confidence 9753 2 3444432 344 58999999999999998865 567889999999844
Q ss_pred EEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH------cCceEEEecC-----hHHHHHH
Q psy14917 229 EVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVE------AGAMAVRRVK-----KVDLKRI 297 (407)
Q Consensus 229 ~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~------~~I~~i~~v~-----~~~l~~i 297 (407)
++++++ +.++++.+.+.|++|||++++|++.++++|.. .+|.++++.+ +.+|+||
T Consensus 227 ---i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~i 292 (546)
T PRK14104 227 ---LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDI 292 (546)
T ss_pred ---hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHH
Confidence 344444 67889999999999999999999999999995 4688997776 8999999
Q ss_pred HHHhCCeeccc-----cCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCC------------------------
Q psy14917 298 AKATGASFLTS-----LSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKAR------------------------ 348 (407)
Q Consensus 298 a~~tGa~ii~~-----~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------------------ 348 (407)
|.+|||+++++ ++++++.+ ||+|+.+++ ++++++++.+|..+
T Consensus 293 a~~tG~~~i~~~~~~~l~~~~~~~------LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (546)
T PRK14104 293 AILTGGQAISEDLGIKLENVTLQM------LGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDRE 363 (546)
T ss_pred HHHhCCEEEecCCCCCcCcCCHHH------CCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999 77777776 999999885 77889999998775
Q ss_pred -----------CeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhh
Q psy14917 349 -----------TAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFA 405 (407)
Q Consensus 349 -----------~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a 405 (407)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|..|+++.
T Consensus 364 ~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~ 430 (546)
T PRK14104 364 KLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK 430 (546)
T ss_pred HHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999998 99999999999999998764
No 40
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.5e-66 Score=533.84 Aligned_cols=352 Identities=24% Similarity=0.372 Sum_probs=315.0
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChH----HHHHHHHHHhhhhhcCCChhHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPA----ARVLVELAQLQDEEVGDGTTSVVIVAAE 77 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGtt~~vlL~~~ 77 (407)
+|..|++++++||||+||+|||+++.|+++|||||+||+++|++.||+ |+|+++++++|++++||||||++||+++
T Consensus 74 g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~ 153 (600)
T PLN03167 74 GVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153 (600)
T ss_pred HHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHH
Confidence 688999999999999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHh
Q psy14917 78 LLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI 157 (407)
Q Consensus 78 ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v 157 (407)
||+++.+++++|+||..|++||+.|.+.++++|+++ +.+++ + +.|.++|+++++ +++.|++|+++|+.++
T Consensus 154 LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-s~~v~--d-~~L~~vA~tS~~------~~~~i~~liaeAv~~V 223 (600)
T PLN03167 154 LIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKM-SKEVE--D-SELADVAAVSAG------NNYEVGNMIAEAMSKV 223 (600)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--H-HHHHHHHHHhcc------CcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 98884 3 569999999986 3679999999999999
Q ss_pred cccccCCCccccCCceEEEEcCCCCCCCc-eeEeeEEEecccccc-------cccccccCceEEEEeecccccccccCeE
Q psy14917 158 KITEKSGNVTYPIKAINLLKAHGKSARES-VLVQGYALNCTVASQ-------AMKKKITNAKIACLDFSLQKAKMKLGVE 229 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~I~i~~~~G~~~~dS-~li~G~v~~~~~~~~-------~~~~~~~~~kI~l~~~~L~~~~~~~~~~ 229 (407)
+++ | .|.+. .|++.+|+ ++++|++|++++.+| +|++.++||+|+++++.
T Consensus 224 g~~---g-------~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~----------- 280 (600)
T PLN03167 224 GRK---G-------VVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK----------- 280 (600)
T ss_pred ccC---C-------cEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc-----------
Confidence 753 2 23332 68889997 999999999999988 67889999999999985
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH------HcCceEEEecC-----hHHHHHHH
Q psy14917 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFV------EAGAMAVRRVK-----KVDLKRIA 298 (407)
Q Consensus 230 ~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~------~~~I~~i~~v~-----~~~l~~ia 298 (407)
+++.+++ .++++++.+.|+++|+++++|++.++++|. ..+|.++++.+ +++|++||
T Consensus 281 --i~~~~~l-----------~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia 347 (600)
T PLN03167 281 --ITNARDL-----------IGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIA 347 (600)
T ss_pred --cCCHHHH-----------HHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHH
Confidence 4556664 445567888999999999999999999999 67799999886 88999999
Q ss_pred HHhCCeecc-----ccCCCCCccccCCCCceeeeeEEEEE-----ecC--------eeEEEEECCC------------C-
Q psy14917 299 KATGASFLT-----SLSNMEGEESFEASSLGEAAEVVQTQ-----VCD--------DELILINGPK------------A- 347 (407)
Q Consensus 299 ~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~-----~g~--------~~~~~~~~~~------------~- 347 (407)
.+|||.+++ +++++++++ ||+|+.|++.+ +|+ +++.+|++|. +
T Consensus 348 ~~tGa~~i~~~~~~~l~~~~~~~------LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~ 421 (600)
T PLN03167 348 ILTGGTVIREEVGLSLDKVGKEV------LGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNE 421 (600)
T ss_pred HhhCCEEecccccCCcccCCHHH------CceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHH
Confidence 999999999 567777766 99999999987 775 4777887764 1
Q ss_pred -----CCeEEEE-EeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhhc
Q psy14917 348 -----RTAASII-LRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406 (407)
Q Consensus 348 -----~~~~TIl-lrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a~ 406 (407)
+.++|++ +||+|+.+++|.||+++||++++|+++++| +|||||++|++++..|+++++
T Consensus 422 Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~ 485 (600)
T PLN03167 422 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKD 485 (600)
T ss_pred HHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHh
Confidence 2356666 999999999999999999999999999999 999999999999999998864
No 41
>KOG0357|consensus
Probab=100.00 E-value=3.6e-53 Score=385.44 Aligned_cols=260 Identities=38% Similarity=0.592 Sum_probs=250.0
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKN 81 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~~ 81 (407)
|..+++..+++|+||.|++|+++.+.|++++|||| .|++++++...+.+|+.++|||||.+++|++.++++
T Consensus 36 agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleq 106 (400)
T KOG0357|consen 36 AAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQ 106 (400)
T ss_pred HHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhccCCcccEEecccchHh
Confidence 67889999999999999999999999999999999 789999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcccc
Q psy14917 82 ADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITE 161 (407)
Q Consensus 82 ~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~~ 161 (407)
+..++.+|+||.+|.+||..+.+.+++.|+++ +.+++
T Consensus 107 a~~li~~~ihpiki~~g~e~~~~~av~~l~~i-~~~~e------------------------------------------ 143 (400)
T KOG0357|consen 107 AHELIDRGIHPIKIAQGYEKAKVVAVEHLDEI-SDPFE------------------------------------------ 143 (400)
T ss_pred HHhhcccccchhHHHHhhhhHHHhhhhhhhhh-ccccc------------------------------------------
Confidence 99999999999999999999999999999988 65542
Q ss_pred cCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHHH
Q psy14917 162 KSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGI 241 (407)
Q Consensus 162 ~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~~ 241 (407)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccCCC
Q psy14917 242 RARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEAS 321 (407)
Q Consensus 242 ~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~~~ 321 (407)
+.++++++++.|+++++|||++||+|.++|-+|+.++++||...++|.||.+||++|+++++++++++
T Consensus 144 -------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~k----- 211 (400)
T KOG0357|consen 144 -------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEK----- 211 (400)
T ss_pred -------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhh-----
Confidence 56778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeEEEEEec--CeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHH
Q psy14917 322 SLGEAAEVVQTQVC--DDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSI 399 (407)
Q Consensus 322 ~lG~~~~v~~~~~g--~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~ 399 (407)
||+|+.|++..|| .+++..+++|++++.+||.+||+|+.+++|.||++|||||++||+++|.++|+|||+.|+.||.
T Consensus 212 -LG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscsl 290 (400)
T KOG0357|consen 212 -LGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCAL 290 (400)
T ss_pred -ccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhh
Confidence 9999999999999 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy14917 400 YLENFAT 406 (407)
Q Consensus 400 ~l~~~a~ 406 (407)
++.+.|+
T Consensus 291 av~~ead 297 (400)
T KOG0357|consen 291 AVSQEAD 297 (400)
T ss_pred HhhHhhc
Confidence 9988774
No 42
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.1e-45 Score=345.05 Aligned_cols=235 Identities=23% Similarity=0.303 Sum_probs=216.0
Q ss_pred CCCchHHHHHHHHHHHHHhcccccCCCccccCC-ceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEee
Q psy14917 139 IGPDDNFFATMVVDAAQAIKITEKSGNVTYPIK-AINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDF 217 (407)
Q Consensus 139 ~~~~~~~ls~l~v~a~~~v~~~~~~~~~~~~~~-~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~ 217 (407)
.+.|.++|++++++|+..+.+...++ ..+|.+ +|+|++++||+++||++++|+++++.+.++.||+.++||||+++++
T Consensus 16 ~~~~~~~ls~l~v~Av~~v~~~~~~~-~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~ 94 (261)
T cd03334 16 DESWLDILLPLVWKAASNVKPDVRAG-DDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQG 94 (261)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccC-CccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEee
Confidence 34689999999999999997542212 247765 6999999999999999999999999999999999999999999999
Q ss_pred cccccccccCeEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHH
Q psy14917 218 SLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRI 297 (407)
Q Consensus 218 ~L~~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~i 297 (407)
+|++++++. +++++++++++|++++++++++|.+.|+|||+|+|+|++.+++||.++||++++++++++|+||
T Consensus 95 ~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rI 167 (261)
T cd03334 95 PLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERI 167 (261)
T ss_pred eeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHH
Confidence 999998863 4688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccc-cCCCCCccccCCCCceeeeeEEEEEecC-----eeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHH
Q psy14917 298 AKATGASFLTS-LSNMEGEESFEASSLGEAAEVVQTQVCD-----DELILINGPKARTAASIILRGPNDFYCDEMERSIH 371 (407)
Q Consensus 298 a~~tGa~ii~~-~~~l~~~~~~~~~~lG~~~~v~~~~~g~-----~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~ 371 (407)
|++|||.++++ .+.+++++ +|+|+.|++.++|+ ++|++|++|+.+++|||+|||+++++++|+||+++
T Consensus 168 a~~tGa~ii~~i~~~~~~~~------lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~ 241 (261)
T cd03334 168 SRCTGADIISSMDDLLTSPK------LGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVE 241 (261)
T ss_pred HHHhCCEEecChhhhcCccc------CcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHH
Confidence 99999999999 45788877 99999999999996 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEE
Q psy14917 372 DALCVVKRVLESKNLV 387 (407)
Q Consensus 372 dal~~~~~~~~~~~~v 387 (407)
||+++++++..++.++
T Consensus 242 Dal~v~~~~~le~~~~ 257 (261)
T cd03334 242 FMVFAAYHLKLETSFL 257 (261)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 9999999998876543
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=5.2e-41 Score=305.35 Aligned_cols=208 Identities=43% Similarity=0.632 Sum_probs=198.4
Q ss_pred HHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccc
Q psy14917 124 ECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAM 203 (407)
Q Consensus 124 ~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~ 203 (407)
+.|.++|+|+++||+ ++|.+.+++++++|+..+++... .++.++|+|++++||+++||++++|++|++++.++.|
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 468999999999999 99999999999999999986432 4678899999999999999999999999999999999
Q ss_pred cccccCceEEEEeecccccccccCeEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCc
Q psy14917 204 KKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA 283 (407)
Q Consensus 204 ~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I 283 (407)
|+.++||||++++++|++ +|+++++|++.+++||.++||
T Consensus 77 ~~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I 115 (209)
T cd03333 77 PKRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGI 115 (209)
T ss_pred CeEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCC
Confidence 999999999999999997 999999999999999999999
Q ss_pred eEEEecChHHHHHHHHHhCCeeccccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhH
Q psy14917 284 MAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYC 363 (407)
Q Consensus 284 ~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l 363 (407)
++++++++++|+|||++|||+++++++++++++ +|+|+.|++.++|+++|++|++|+++.+|||+||||+++++
T Consensus 116 ~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~------lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l 189 (209)
T cd03333 116 MAVRRVKKEDLERIARATGATIVSSLEDLTPED------LGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVEL 189 (209)
T ss_pred EEEEeCCHHHHHHHHHHHCCEEecccccCChhh------ceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHH
Confidence 999999999999999999999999999988887 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy14917 364 DEMERSIHDALCVVKRVLES 383 (407)
Q Consensus 364 ~e~~r~i~dal~~~~~~~~~ 383 (407)
+|+||+++||++++++++++
T Consensus 190 ~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 190 DEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999874
No 44
>KOG0356|consensus
Probab=100.00 E-value=1.6e-35 Score=286.77 Aligned_cols=353 Identities=24% Similarity=0.328 Sum_probs=296.2
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChH----HHHHHHHHHhhhhhcCCChhHHHHHHHH
Q psy14917 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPA----ARVLVELAQLQDEEVGDGTTSVVIVAAE 77 (407)
Q Consensus 2 a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGtt~~vlL~~~ 77 (407)
.+..|++++.+|+||+||++++-...|.+.|||||.|+.+++.+.+++ |+++++.+.+..+..|||||++.+|+.+
T Consensus 32 Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~agdGtttatvlar~ 111 (550)
T KOG0356|consen 32 GVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEAGDGTTTATVLARA 111 (550)
T ss_pred hHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCccccCcchHHHHHHH
Confidence 467899999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHh
Q psy14917 78 LLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI 157 (407)
Q Consensus 78 ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v 157 (407)
+.+++..-+.+|..|..|.+|...+.+...+.|+++ ++++ ...+.+.++|..+.+| +....+++.+|+.++
T Consensus 112 i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~-sk~V--tt~eeIaqVAtiSAng------D~~ig~li~~a~~kv 182 (550)
T KOG0356|consen 112 IAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKM-SKPV--TTPEEIAQVATISANG------DKEIGNLISDAMKKV 182 (550)
T ss_pred HHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHh-CCCC--CCHHHHHHHHhhhcCC------cHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 9999 5899999999988775 788899999999999
Q ss_pred cccccCCCccccCCceEEEEcCCCCCCC-ceeEeeEEEeccccccccc-------ccccCceEEEEeecccccccccCeE
Q psy14917 158 KITEKSGNVTYPIKAINLLKAHGKSARE-SVLVQGYALNCTVASQAMK-------KKITNAKIACLDFSLQKAKMKLGVE 229 (407)
Q Consensus 158 ~~~~~~~~~~~~~~~I~i~~~~G~~~~d-S~li~G~v~~~~~~~~~~~-------~~~~~~kI~l~~~~L~~~~~~~~~~ 229 (407)
+++. -|.++ .|....| -++++|+-|++++.+|++. .++++|+++|....
T Consensus 183 G~~G----------VItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk----------- 239 (550)
T KOG0356|consen 183 GRKG----------VITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK----------- 239 (550)
T ss_pred CcCC----------eEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh-----------
Confidence 8642 34443 5666654 5899999999999987653 24678888777654
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC-----------ceEEEecChHHHHHHH
Q psy14917 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAG-----------AMAVRRVKKVDLKRIA 298 (407)
Q Consensus 230 ~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~-----------I~~i~~v~~~~l~~ia 298 (407)
++++++ +.+.++.-.+...++++...+|+.+++..|.-|+ ++.|++-++..+.+++
T Consensus 240 --i~~v~~-----------ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Dia 306 (550)
T KOG0356|consen 240 --ISSVQS-----------IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIA 306 (550)
T ss_pred --hhHHHH-----------HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHH
Confidence 445555 5666777777788999999999999999999875 4566788889999999
Q ss_pred HHhCCeeccccCC-CCCccccCCCCceeeeeEEEEEecCeeEEEEEC--CC-----------------------------
Q psy14917 299 KATGASFLTSLSN-MEGEESFEASSLGEAAEVVQTQVCDDELILING--PK----------------------------- 346 (407)
Q Consensus 299 ~~tGa~ii~~~~~-l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~--~~----------------------------- 346 (407)
.+||+.++.+--. ++.+ ......+|.|..+....-. -..+.+ ++
T Consensus 307 i~Tg~~v~~~e~~~l~le-~~~~~dLG~~~evvvtkd~---t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er 382 (550)
T KOG0356|consen 307 ILTGATVFGEELSTLNLE-DAKLEDLGEVGEVVVTKDD---TMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNER 382 (550)
T ss_pred HHhhhhhhccchhhcccc-cCchhhcCcceeEEEecCc---ceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Confidence 9999999976322 2221 2233349999998875421 011110 00
Q ss_pred ----CCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhh
Q psy14917 347 ----ARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENF 404 (407)
Q Consensus 347 ----~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~ 404 (407)
.....+|.+.|.++.+++|.+.++.||+++++.++++| +|||||++.++|+..|.+.
T Consensus 383 ~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~l 443 (550)
T KOG0356|consen 383 LAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDEL 443 (550)
T ss_pred HHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhc
Confidence 14689999999999999999999999999999999999 9999999999999988764
No 45
>KOG0230|consensus
Probab=99.95 E-value=7.6e-28 Score=254.64 Aligned_cols=238 Identities=19% Similarity=0.286 Sum_probs=215.9
Q ss_pred CchHHHHHHHHHHHHHhcccccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeeccc
Q psy14917 141 PDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQ 220 (407)
Q Consensus 141 ~~~~~ls~l~v~a~~~v~~~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~ 220 (407)
.|.+.+..++++|...+.++...+..++..++|++++++||+..||++++|+++.+.+++..|..+.++|||+++.++|+
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~le 411 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLE 411 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchh
Confidence 58899999999999999987765555666789999999999999999999999999999999999999999999999999
Q ss_pred ccccccCeEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHH
Q psy14917 221 KAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300 (407)
Q Consensus 221 ~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~ 300 (407)
|++...+ + ..++.+.++|.++++.+|.+|...+++++++.++|+..|+++|...+|.++-+++..-|+||+++
T Consensus 412 yqrisn~----l---sS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~ 484 (1598)
T KOG0230|consen 412 YQRISNQ----L---SSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRC 484 (1598)
T ss_pred hhhhhcc----c---cchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHH
Confidence 9986655 3 44666777799999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccccCCCCCccccCCCCceeeeeEEEEEec-----CeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHH
Q psy14917 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVC-----DDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALC 375 (407)
Q Consensus 301 tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~~g-----~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~ 375 (407)
|||.|+++++.++..+ +|+|+.|++.++- .+.++||++|+.+.+|||+|||.....+.++|+.++-+..
T Consensus 485 tga~I~~siDslt~~k------lg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~ 558 (1598)
T KOG0230|consen 485 TGADIVPSVDSLTSQK------LGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVF 558 (1598)
T ss_pred hcCceecchhhhhccc------cCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999888 9999999887654 5689999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeCCC
Q psy14917 376 VVKRVLESKNLVAGGG 391 (407)
Q Consensus 376 ~~~~~~~~~~~vpGGG 391 (407)
+.+++.-+..++.--|
T Consensus 559 aay~l~LE~SflaDe~ 574 (1598)
T KOG0230|consen 559 AAYHLALETSFLADEG 574 (1598)
T ss_pred HHHHHHHhhhhhhccC
Confidence 9998865544444333
No 46
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=80.12 E-value=7 Score=29.82 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecCh
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKK 291 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~ 291 (407)
.+.+.|...++++|+| ++|.+.+...|.++||.++.....
T Consensus 44 ~~~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~~ 83 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAGG 83 (94)
T ss_dssp HHHHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTSS
T ss_pred hHHHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCCC
Confidence 3455666789999999 779999999999999999998443
No 47
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=76.78 E-value=11 Score=30.75 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCe
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGAS 304 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ 304 (407)
...+.|++.|+++|+| ..+.+.+.++|.++||-+..-.+.+.=+.|-....+.
T Consensus 56 ~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~ 108 (121)
T COG1433 56 RIAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE 108 (121)
T ss_pred HHHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCC
Confidence 3567888999999999 7899999999999999999877755555555544443
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=76.50 E-value=6.9 Score=30.48 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecC
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVK 290 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~ 290 (407)
...+.|...++++|+| +++.+.+.+.|.++||.++....
T Consensus 54 ~~~~~l~~~~v~~vi~-~~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIV-GGIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEe-CCCCcCHHHHHHHCCCEEEEcCC
Confidence 4556666789999999 57999999999999999997776
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=66.85 E-value=20 Score=27.61 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=32.6
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecC
Q psy14917 252 RINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVK 290 (407)
Q Consensus 252 ~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~ 290 (407)
..+.+...++++|+|. ++.+.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 4556667899999995 5999999999999999998776
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=66.43 E-value=32 Score=26.15 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCcEEEeCCCCCHHHHH----HHHHcCceEEEecChHHHHHHHH
Q psy14917 249 TKERINKILATGANVILVSGGIDDLCLK----YFVEAGAMAVRRVKKVDLKRIAK 299 (407)
Q Consensus 249 l~~~v~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~i~~v~~~~l~~ia~ 299 (407)
+++.++.|.+-.+.+|+..+++++.... ++.++||+++.--++.+|-+.+-
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcg 72 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVG 72 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 4566778888889999999999988665 56788999999998888876654
No 51
>PRK07283 hypothetical protein; Provisional
Probab=62.77 E-value=37 Score=26.52 Aligned_cols=51 Identities=8% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHH----HHHHHcCceEEEecChHHHHHHHHHhCC
Q psy14917 250 KERINKILATGANVILVSGGIDDLCL----KYFVEAGAMAVRRVKKVDLKRIAKATGA 303 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~v~~~~l~~ia~~tGa 303 (407)
+...+.|.+-.+.+||...+.++... +.+...+|+++...+++ .+.+++|-
T Consensus 24 ~~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~---eLG~a~Gk 78 (98)
T PRK07283 24 ELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL---ELSAAVGK 78 (98)
T ss_pred HHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 34556777778999999999999988 56667799998877665 46666763
No 52
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=57.42 E-value=45 Score=32.25 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeec
Q psy14917 250 KERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFL 306 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii 306 (407)
.++++.+.+.+|.+|++..+.+.. .+.|.+.||.++-.+..-..-+-+.-.|+..+
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 456788888999999999888776 58899999999998887666666777788665
No 53
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=57.06 E-value=33 Score=29.79 Aligned_cols=52 Identities=27% Similarity=0.299 Sum_probs=37.9
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEe-cC--h----HHHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGGIDDLCLKYFVEAGAMAVRR-VK--K----VDLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~-v~--~----~~l~~ia~~tGa~ 304 (407)
++.|.+.+|++||......+...+.|.+.||.++-- .. . +.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 577888899999987766666778899999965432 21 1 3577888888863
No 54
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=56.95 E-value=31 Score=33.86 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=40.5
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecC---h----HHHHHHHHHhCCe
Q psy14917 252 RINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVK---K----VDLKRIAKATGAS 304 (407)
Q Consensus 252 ~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~---~----~~l~~ia~~tGa~ 304 (407)
-+++|+.++|++||....-++...+.|.+.||.++..-. . +.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 368899999999999766666678899999999865422 1 4567888888873
No 55
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=55.46 E-value=56 Score=31.36 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeecc
Q psy14917 250 KERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLT 307 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~ 307 (407)
.+.++.+.+.++++|.+..+.++...+.+.+.|+.++-.+..-+.-+-+.-.|+..+.
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVI 134 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEE
Confidence 4567778889999999988888888899999999999888777666666667887773
No 56
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=55.12 E-value=46 Score=26.16 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.6
Q ss_pred cCCcEEEeCCCCCHHHHHHHHHcCceEEEecC
Q psy14917 259 TGANVILVSGGIDDLCLKYFVEAGAMAVRRVK 290 (407)
Q Consensus 259 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~ 290 (407)
.++++|++ +++.+.+...|.++||.++.--.
T Consensus 64 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLC-AKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEee-hhhCccHHHHHHHCCCEEEEecC
Confidence 59999999 88999999999999999995544
No 57
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=54.33 E-value=43 Score=30.42 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=38.6
Q ss_pred HHHHHHcCCcEEEeCCCCCHHH-HHHHHHcCceEEEec--C----hHHHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGGIDDLC-LKYFVEAGAMAVRRV--K----KVDLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~a-l~~l~~~~I~~i~~v--~----~~~l~~ia~~tGa~ 304 (407)
+++|.+.+|+|||....-++.. .+.|.+.||.++-.- . .+.++.+++++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 5788889999999976555544 888999999765432 1 24578899998875
No 58
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=53.92 E-value=54 Score=26.56 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHH-H----HHHHHHcCceEEEecChHHHHHHH
Q psy14917 250 KERINKILATGANVILVSGGIDDL-C----LKYFVEAGAMAVRRVKKVDLKRIA 298 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~-a----l~~l~~~~I~~i~~v~~~~l~~ia 298 (407)
++..+.|.+-.+.+|+...++++. . .+++.+.+|+.+..-++.+|-+.+
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~ 85 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAAA 85 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHh
Confidence 345566777778999999999764 3 445788899988877776655443
No 59
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=53.75 E-value=68 Score=24.16 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHH----HHHHcCceEEEecChHHHHHHHHHhCCe
Q psy14917 250 KERINKILATGANVILVSGGIDDLCLK----YFVEAGAMAVRRVKKVDLKRIAKATGAS 304 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~i~~v~~~~l~~ia~~tGa~ 304 (407)
++..+.|.+-++.+|+...+.++.... ++.+++|+++.--++.+ |.+++|-.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~e---LG~a~G~~ 72 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKK---LGKACGIE 72 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHHCCC
Confidence 455677777889999999999998654 45788999987776655 45556543
No 60
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=53.02 E-value=61 Score=26.51 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHH-H----HHHHHHcCceEEEecChHHHHHHHHHhCC
Q psy14917 250 KERINKILATGANVILVSGGIDDL-C----LKYFVEAGAMAVRRVKKVDLKRIAKATGA 303 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~-a----l~~l~~~~I~~i~~v~~~~l~~ia~~tGa 303 (407)
++.++.|.+-.+.+||...++++. . .+++.+++|+++..-++.+| .+++|-
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eL---G~a~Gk 91 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDL---GKAAGL 91 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 345666777779999999999873 2 33567889998777766554 455554
No 61
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=52.82 E-value=37 Score=32.03 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=40.7
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEe-c-C----hHHHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGGIDDLCLKYFVEAGAMAVRR-V-K----KVDLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~-v-~----~~~l~~ia~~tGa~ 304 (407)
+++|.+.+|++||.....++...+.|.+.||.++-- . . .+.++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 578889999999998888888889999999877532 1 1 23578888888854
No 62
>PRK06683 hypothetical protein; Provisional
Probab=51.93 E-value=72 Score=24.08 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHHH----HHHcCceEEEecChHHHHHHHHHhCCe
Q psy14917 250 KERINKILATGANVILVSGGIDDLCLKY----FVEAGAMAVRRVKKVDLKRIAKATGAS 304 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~al~~----l~~~~I~~i~~v~~~~l~~ia~~tGa~ 304 (407)
++.++.|.+-++.+||...+.++...+- +..++|+++..-++. .|.+++|-.
T Consensus 17 ~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~---eLG~A~G~~ 72 (82)
T PRK06683 17 KRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVR---KLGKVAGIQ 72 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHH---HHHHHhCCc
Confidence 3445677778899999999999977664 577899998777554 455666654
No 63
>PRK07714 hypothetical protein; Provisional
Probab=51.78 E-value=75 Score=24.84 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHHHH----HHcCceEEEecChHHHHHHHHHhCCe
Q psy14917 250 KERINKILATGANVILVSGGIDDLCLKYF----VEAGAMAVRRVKKVDLKRIAKATGAS 304 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~al~~l----~~~~I~~i~~v~~~~l~~ia~~tGa~ 304 (407)
++..+.+.+-.+.+||...+.++....-+ ..++|+++...++++ +..++|-.
T Consensus 24 ~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~e---LG~a~Gk~ 79 (100)
T PRK07714 24 ELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQ---LGHAIGKD 79 (100)
T ss_pred HHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHH---HHHHhCCC
Confidence 34556777778899999999998766544 567999998776644 55666654
No 64
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=49.18 E-value=42 Score=25.75 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCcEEEeCCCCCHHHH-----HHHHHcCceEEEecChHHHHHHHHHhCCe
Q psy14917 249 TKERINKILATGANVILVSGGIDDLCL-----KYFVEAGAMAVRRVKKVDLKRIAKATGAS 304 (407)
Q Consensus 249 l~~~v~~i~~~~~~lVi~~~~I~~~al-----~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ 304 (407)
+++..+.+.+-.+.+|+...++++... .++.+++|+++..-++.+ |.+++|-.
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~e---LG~~~g~~ 77 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEE---LGRACGKK 77 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHH---HHHHTTSS
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHH---HHHHHCCC
Confidence 345667777778899999999987433 467889999988875554 55555554
No 65
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=48.99 E-value=46 Score=28.83 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHHcCCcEEEeCCCCCHH-HHHHHHHcCceEEEec-----C--hHHHHHHHHHhC
Q psy14917 253 INKILATGANVILVSGGIDDL-CLKYFVEAGAMAVRRV-----K--KVDLKRIAKATG 302 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~-al~~l~~~~I~~i~~v-----~--~~~l~~ia~~tG 302 (407)
+++|.+.+|++||......+. ....|.+.||.++.-- . .+.++.+.+++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 578889999999987665554 8889999998664431 1 134667777777
No 66
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=48.91 E-value=71 Score=25.54 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHH----HHHHHHcCceEEEe-cChHHHHHHHHHhCC
Q psy14917 250 KERINKILATGANVILVSGGIDDLC----LKYFVEAGAMAVRR-VKKVDLKRIAKATGA 303 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~a----l~~l~~~~I~~i~~-v~~~~l~~ia~~tGa 303 (407)
++.++.|.+-++.+||.+.+.++.. .+++...+|+++.. -++ +.|.+++|-
T Consensus 31 ~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk 86 (108)
T PTZ00106 31 KSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGR 86 (108)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCC
Confidence 3456777778899999999999875 45667789999875 555 455666774
No 67
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=48.84 E-value=71 Score=25.80 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecC----hHHHHHHHHHhCC
Q psy14917 250 KERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVK----KVDLKRIAKATGA 303 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~----~~~l~~ia~~tGa 303 (407)
...++.+ .++++||| .+|.+.+...|.+.||.++.--. .+.|+.+.+..-.
T Consensus 55 ~~~~~~l--~~c~vvi~-~~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~ 109 (119)
T TIGR02663 55 APKIEAL--KDCAILYC-LAIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKG 109 (119)
T ss_pred HHHHHHh--CCCcEEEE-hhcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcC
Confidence 3334444 59999999 89999999999999999997432 4566777766644
No 68
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=46.70 E-value=1.7e+02 Score=27.97 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEe
Q psy14917 243 ARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRR 288 (407)
Q Consensus 243 ~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~ 288 (407)
+.-..+++++++.+.+.|..+++-..+-......++.+.|+-++..
T Consensus 204 e~~~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d~~~~ 249 (330)
T cd03465 204 EFSLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGADVFSI 249 (330)
T ss_pred HHhhHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCCeEee
Confidence 3344556666677766655544432233334455565656555443
No 69
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=46.40 E-value=99 Score=23.36 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHH----HHHcCceEEEecChHHHHHHHHHhCCe
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKY----FVEAGAMAVRRVKKVDLKRIAKATGAS 304 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~----l~~~~I~~i~~v~~~~l~~ia~~tGa~ 304 (407)
..++.|.+-++.+||...+.++....- +..++|++...-++. .|.+++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~---eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMK---ELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHH---HHHHHHCCc
Confidence 455677778899999999999887664 456799997666554 455666654
No 70
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=45.13 E-value=95 Score=24.11 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=27.7
Q ss_pred cCCcEEEeCCCCCHHHHHHHHHcCceEEEecC
Q psy14917 259 TGANVILVSGGIDDLCLKYFVEAGAMAVRRVK 290 (407)
Q Consensus 259 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~ 290 (407)
.++++||| ++|.+.+...|.++||.++.-..
T Consensus 60 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYC-AAIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEE-hhcChhHHHHHHHcCCEEEEcCC
Confidence 48999998 88999999999999999997655
No 71
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=43.70 E-value=1.2e+02 Score=23.75 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHH----HHHHcCceEEEec-ChHHHHHHHHHhCC
Q psy14917 250 KERINKILATGANVILVSGGIDDLCLK----YFVEAGAMAVRRV-KKVDLKRIAKATGA 303 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~i~~v-~~~~l~~ia~~tGa 303 (407)
+...+.|.+-.+.+|+...+.++.... ++.+++|+++... ++.+ |.+++|-
T Consensus 22 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~e---LG~a~Gk 77 (99)
T PRK01018 22 KRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVE---LGTLCGK 77 (99)
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHH---HHHHhCC
Confidence 345677777889999999999887654 5577899998874 6655 5566664
No 72
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=43.24 E-value=97 Score=30.02 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCcEEEeCCCCC-HHHHHHHHHcCceEEEecChHHHHHHHHHhCCeec
Q psy14917 249 TKERINKILATGANVILVSGGID-DLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFL 306 (407)
Q Consensus 249 l~~~v~~i~~~~~~lVi~~~~I~-~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii 306 (407)
+...++.+.+.++++|.+.-+.. +...+.+.+.||.++-.+..-..=+.+.-.|+..+
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 67778888888999999988887 88999999999999998887766566666675433
No 73
>PF12846 AAA_10: AAA-like domain
Probab=41.99 E-value=68 Score=29.82 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCcEEEeCCCCCHHH-----HHHHHHcCceEEEecChHHHHHHHHHhCCe
Q psy14917 248 ITKERINKILATGANVILVSGGIDDLC-----LKYFVEAGAMAVRRVKKVDLKRIAKATGAS 304 (407)
Q Consensus 248 ~l~~~v~~i~~~~~~lVi~~~~I~~~a-----l~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ 304 (407)
.+.+++....+.|+.+++....+++.. ...+..-+..++.++...+.+.+++..|-+
T Consensus 241 ~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 241 FLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 477888899999999999999998888 789999999999999999998899988764
No 74
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=40.37 E-value=93 Score=25.24 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCcEEEeCCC-----CCHHHHHHHHHcCceEEEecChHHH
Q psy14917 248 ITKERINKILATGANVILVSGG-----IDDLCLKYFVEAGAMAVRRVKKVDL 294 (407)
Q Consensus 248 ~l~~~v~~i~~~~~~lVi~~~~-----I~~~al~~l~~~~I~~i~~v~~~~l 294 (407)
.+.++++.+.+.|+--+....+ |++.+.+++++.++++|.--..--+
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~~~f 111 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWEVPF 111 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCCCCH
Confidence 3788899999999876666555 9999999999999999975444333
No 75
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=40.23 E-value=50 Score=30.44 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHH
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVD 293 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~ 293 (407)
+++.|..+.|+++|++...-...+.++-.+.||+.+..++..-
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~r 225 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNGR 225 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCCc
Confidence 5678888889999999999999999999999999988777553
No 76
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=39.77 E-value=31 Score=28.34 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHcCceEEEe
Q psy14917 238 LDGIRARESDITKERINKILATGANVILVSGGI--DDLCLKYFVEAGAMAVRR 288 (407)
Q Consensus 238 ~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I--~~~al~~l~~~~I~~i~~ 288 (407)
+.-+.....+..++.++++.+.++.+||...+. ++...+.+.++++++++-
T Consensus 59 ~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 59 SAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred HHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 333333344456788899999999988887766 688889999999999873
No 77
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=39.66 E-value=2.5e+02 Score=25.74 Aligned_cols=112 Identities=16% Similarity=0.267 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCcEEEeCCCC-------------CHHHHHHHHHcCceEEEecChHHH------HHHHHHhCCeeccccCC
Q psy14917 251 ERINKILATGANVILVSGGI-------------DDLCLKYFVEAGAMAVRRVKKVDL------KRIAKATGASFLTSLSN 311 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I-------------~~~al~~l~~~~I~~i~~v~~~~l------~~ia~~tGa~ii~~~~~ 311 (407)
+.+++.++.|+|+||+--.+ ....+..|.++||.++..-..-|. ..+++..|......++.
T Consensus 44 ~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~lD~~~~G~n~~La~~Lgl~~~~~~~~ 123 (241)
T PF01784_consen 44 EVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSAHTNLDAAPGGVNDYLAKKLGLENIKPLDP 123 (241)
T ss_dssp HHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEESHHHHHSTTSHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEecccccccCcCHHHHHHHHhCCCCcccccc
Confidence 45677777899999995442 235666788899999985554443 78999999876555443
Q ss_pred CC---CccccCCCCceeeeeEEE-EEecC----------eeEEEEECCCCCCeEEEEEeCCChh-hHHHHHH
Q psy14917 312 ME---GEESFEASSLGEAAEVVQ-TQVCD----------DELILINGPKARTAASIILRGPNDF-YCDEMER 368 (407)
Q Consensus 312 l~---~~~~~~~~~lG~~~~v~~-~~~g~----------~~~~~~~~~~~~~~~TIllrg~~~~-~l~e~~r 368 (407)
.. ... +|....+.. .++.+ -..+.+.+.++.+.-+|-+++++-. .++++.+
T Consensus 124 ~~~~~~~g------~g~i~~l~~~~s~~el~~~vk~~l~~~~vr~~g~~~~~v~rVav~~GsG~~~i~~a~~ 189 (241)
T PF01784_consen 124 SKSGEGYG------LGRIGELPEPMSLEELAERVKEKLGLPGVRVVGDPDKKVKRVAVCGGSGGSFIEEAAE 189 (241)
T ss_dssp EEEEEEEE------CEEEEEEEEEEEHHHHHHHHHHHTTSS-EEEESCTTSEEEEEEEECSSSGGGHHHHHH
T ss_pred ccccccce------eeeEeecCCCCCHHHHHHHHHHHcCCCcEEecCCCCCcccEEEEEcccCccHHHHHHh
Confidence 22 222 677666665 34331 2345555555666777766655544 5555543
No 78
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=38.97 E-value=73 Score=29.53 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=36.5
Q ss_pred HHHHHHcCCcEEEeCCC-CCHHHHHHHHHcCceEEEec--Ch----HHHHHHHHHhCC
Q psy14917 253 INKILATGANVILVSGG-IDDLCLKYFVEAGAMAVRRV--KK----VDLKRIAKATGA 303 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~-I~~~al~~l~~~~I~~i~~v--~~----~~l~~ia~~tGa 303 (407)
+++|.+++|++|+...+ -.+...+.|.+.||.++.-- +. +.++.+++++|-
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 57788899999998644 34567788999999877542 12 346777787775
No 79
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=37.98 E-value=1.1e+02 Score=24.27 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=26.7
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEE
Q psy14917 253 INKILATGANVILVSGGIDDLCLKYFVEAGAMAVR 287 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~ 287 (407)
.+.|.+.++++||..+...+...+.+.+.||.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 35667779999999887776677788888866554
No 80
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=37.80 E-value=1.5e+02 Score=24.00 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCcEEEeCCCCCH-H----HHHHHHHcCceEEEecChHHHHHHHH
Q psy14917 249 TKERINKILATGANVILVSGGIDD-L----CLKYFVEAGAMAVRRVKKVDLKRIAK 299 (407)
Q Consensus 249 l~~~v~~i~~~~~~lVi~~~~I~~-~----al~~l~~~~I~~i~~v~~~~l~~ia~ 299 (407)
+++.++.|.+-.+.+|+...+++| . ...+|.++||+++.--++.+|-+.+-
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g 87 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAVG 87 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhC
Confidence 455566677777999999999993 3 23466779999999999888876543
No 81
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.21 E-value=92 Score=30.00 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=36.7
Q ss_pred HHHHHHcCCcEEEeCCCC-----CHHHHHHHHHcCceEEEec--------ChHHHHHHHHHhCC
Q psy14917 253 INKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRV--------KKVDLKRIAKATGA 303 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I-----~~~al~~l~~~~I~~i~~v--------~~~~l~~ia~~tGa 303 (407)
+++|.+++|++||..... +....+.|.+.||+++.-- -.+.++.+++++|-
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~ 147 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCC
Confidence 577888999999986544 3457788899998876421 13457888888876
No 82
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=36.65 E-value=1.3e+02 Score=22.52 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=39.1
Q ss_pred CCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhh
Q psy14917 15 GPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDE 62 (407)
Q Consensus 15 GP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~ 62 (407)
=+-+...+++++.|-+.+..-|+.|.+.++=.+-+..++..+....+.
T Consensus 12 ~~v~~~~Vl~~p~~~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~Y~~ 59 (81)
T TIGR03859 12 ERAQDCYVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPA 59 (81)
T ss_pred ccccCcEEEEcCCceeeeChHHHHHHHHccCCCcHHHHHHHHHHHcCC
Confidence 345667788888888899999999999999988888888887776553
No 83
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=36.49 E-value=60 Score=30.42 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChH
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKV 292 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~ 292 (407)
+++.|..+.|+++|++...-...+.++..+.||+.+..++..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 568888999999999999999999999999999999877654
No 84
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=36.05 E-value=1.3e+02 Score=26.94 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=39.6
Q ss_pred HHHHHcCCcEEEeCCCC-CHHHHHHHHHcCceEEEecCh-------HHHHHHHHHhCCe
Q psy14917 254 NKILATGANVILVSGGI-DDLCLKYFVEAGAMAVRRVKK-------VDLKRIAKATGAS 304 (407)
Q Consensus 254 ~~i~~~~~~lVi~~~~I-~~~al~~l~~~~I~~i~~v~~-------~~l~~ia~~tGa~ 304 (407)
++|...+|++||..... ......-+.+.+|+++---.. +.++.++.++|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 77888999999998888 778888888999988864442 4678899999976
No 85
>smart00574 POX domain associated with HOX domains.
Probab=36.04 E-value=40 Score=28.20 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhh
Q psy14917 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFA 405 (407)
Q Consensus 361 ~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a 405 (407)
.+++|++|++.....-++.++-.-..|+|+|+.-.+-+.+|+.-+
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~S 128 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTIS 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 367888888888777777777665577899888777777666543
No 86
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.82 E-value=91 Score=28.35 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEec----ChHHHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRV----KKVDLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v----~~~~l~~ia~~tGa~ 304 (407)
+++|..++|++||+.....+ ..+-|.+.+..++-.. -.+.++.+++++|-.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 57788889999998877665 6677777774443221 235678888888764
No 87
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=35.76 E-value=1.8e+02 Score=23.01 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHH----HHcCceEEEecChHHHHHHHHHhCCee
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKYF----VEAGAMAVRRVKKVDLKRIAKATGASF 305 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~l----~~~~I~~i~~v~~~~l~~ia~~tGa~i 305 (407)
...+.|.+-++.+||...+.++....-+ ...+|+++...++++ |..++|-..
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~~ 79 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRDE 79 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCCC
Confidence 4456677778999999999998766644 456999988877755 566677543
No 88
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=33.83 E-value=1.1e+02 Score=27.48 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=37.3
Q ss_pred HHHHHHcCCcEEEeCCC-CCHHHHHHHHHcCceEEEec---Ch----HHHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGG-IDDLCLKYFVEAGAMAVRRV---KK----VDLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~-I~~~al~~l~~~~I~~i~~v---~~----~~l~~ia~~tGa~ 304 (407)
.++|.+.+|++|+.... .++...+.|.+.||.++..- .. +.++.+++++|-.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~e 110 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGVP 110 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 47888899999999764 45567788999999876421 22 3466777777764
No 89
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.29 E-value=98 Score=27.43 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC----ceEEEecChH
Q psy14917 248 ITKERINKILATGANVILVSGGIDDLCLKYFVEAG----AMAVRRVKKV 292 (407)
Q Consensus 248 ~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~----I~~i~~v~~~ 292 (407)
.++++++.+.++++++++++.+.++..--+|..-. |-++..++..
T Consensus 77 ~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~ 125 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNN 125 (220)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecC
Confidence 48899999999999999999999998888887654 7777766654
No 90
>PRK03298 hypothetical protein; Provisional
Probab=33.11 E-value=1.4e+02 Score=27.24 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=34.3
Q ss_pred HHHHHHHHHHc----CCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHH
Q psy14917 249 TKERINKILAT----GANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLK 295 (407)
Q Consensus 249 l~~~v~~i~~~----~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~ 295 (407)
|...++.+.+. .|.=||++.+|.+.|..++.++||-++. ++.+.|+
T Consensus 165 L~RYve~l~rd~~~~~VRGIlvAp~It~~Ar~Ll~drGle~v~-ld~~~~~ 214 (224)
T PRK03298 165 LTRYLELLNRDPLLAPVRGVFAAQEIKPQARTLAEDRGIRCVT-LDYDALR 214 (224)
T ss_pred HHHHHHHHhhCcCcCCceEEEECCcCCHHHHHHHHHcCCeEEE-cCHHHHc
Confidence 55666666643 2455999999999999999999988775 5555543
No 91
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=32.82 E-value=70 Score=29.41 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecCh
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKK 291 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~ 291 (407)
+++.|..+.|+++|++...-...+.++-.+.||+.+..++.
T Consensus 183 emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 183 EMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 45777788888888888888888888888888888776654
No 92
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.65 E-value=1.6e+02 Score=26.70 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEE-EecChHHHHHHHHHhCCeecccc
Q psy14917 253 INKILATGANVILVSGGIDDLCLKYFVEAGAMAV-RRVKKVDLKRIAKATGASFLTSL 309 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i-~~v~~~~l~~ia~~tGa~ii~~~ 309 (407)
++...+.|++++++- +.++...+++.+.+|..+ ......|+.. +.-.|+.++-=+
T Consensus 80 a~~a~~aGA~FivsP-~~~~~vi~~a~~~~i~~iPG~~TptEi~~-a~~~Ga~~vKlF 135 (212)
T PRK05718 80 LAQAIEAGAQFIVSP-GLTPPLLKAAQEGPIPLIPGVSTPSELML-GMELGLRTFKFF 135 (212)
T ss_pred HHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEEEc
Confidence 567788999999984 688899999999999999 8888888766 677899887543
No 93
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=32.41 E-value=71 Score=29.96 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHH
Q psy14917 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDL 294 (407)
Q Consensus 251 ~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l 294 (407)
+++.|....|++++++-......+.+...+.||+.+..++...+
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~f 255 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGRF 255 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCcc
Confidence 56788889999999999999999999999999999988776544
No 94
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=32.09 E-value=1.4e+02 Score=27.30 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=35.8
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecC--hH----HHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVK--KV----DLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~--~~----~l~~ia~~tGa~ 304 (407)
+++|++++|++||......+.....|.+.+..++-... .+ .++.+++++|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 47788889999999887776666677765544433332 22 478888888864
No 95
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=31.93 E-value=85 Score=31.70 Aligned_cols=41 Identities=22% Similarity=0.086 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCcEEEeC---CCCCHHHHHHHHHcCceEEEecC
Q psy14917 250 KERINKILATGANVILVS---GGIDDLCLKYFVEAGAMAVRRVK 290 (407)
Q Consensus 250 ~~~v~~i~~~~~~lVi~~---~~I~~~al~~l~~~~I~~i~~v~ 290 (407)
-.+++.|.+.|++|.++. .+.+|.+...|.+.||.|+.+-.
T Consensus 62 a~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~~~ 105 (425)
T PRK05476 62 AVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKG 105 (425)
T ss_pred HHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEecCC
Confidence 456788899999988776 56799999999999999998733
No 96
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.73 E-value=3.2e+02 Score=24.63 Aligned_cols=54 Identities=9% Similarity=0.060 Sum_probs=43.1
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEE-ecChHHHHHHHHHhCCeecc
Q psy14917 252 RINKILATGANVILVSGGIDDLCLKYFVEAGAMAVR-RVKKVDLKRIAKATGASFLT 307 (407)
Q Consensus 252 ~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~-~v~~~~l~~ia~~tGa~ii~ 307 (407)
.+++.++.|++.+++ -+.++.+.+++.++||+++- -...+++.+- .-.|++++.
T Consensus 80 ~~~~a~~aGA~Fivs-P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A-~~~Gad~vk 134 (213)
T PRK06552 80 TARLAILAGAQFIVS-PSFNRETAKICNLYQIPYLPGCMTVTEIVTA-LEAGSEIVK 134 (213)
T ss_pred HHHHHHHcCCCEEEC-CCCCHHHHHHHHHcCCCEECCcCCHHHHHHH-HHcCCCEEE
Confidence 367788899999986 79999999999999999885 5555666554 458988886
No 97
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.04 E-value=1.4e+02 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCcEEEe-CCCCCHHHHHHHHHcCceEEEe
Q psy14917 249 TKERINKILATGANVILV-SGGIDDLCLKYFVEAGAMAVRR 288 (407)
Q Consensus 249 l~~~v~~i~~~~~~lVi~-~~~I~~~al~~l~~~~I~~i~~ 288 (407)
..+.++.+.+.|++-+++ .+..++.+.+++.++|+.++..
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 567778888888875554 5666788888899999887753
No 98
>KOG2663|consensus
Probab=30.52 E-value=54 Score=30.31 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHHH
Q psy14917 351 ASIILRGPNDFYCDEMERSIHDALCVVK 378 (407)
Q Consensus 351 ~TIllrg~~~~~l~e~~r~i~dal~~~~ 378 (407)
.||+|+| ++.+++++.|.++|-.++++
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 4999999 78899999999999988874
No 99
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=30.29 E-value=2.1e+02 Score=20.49 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhcc
Q psy14917 77 ELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMS 135 (407)
Q Consensus 77 ~ll~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~ 135 (407)
.|++.+-.+..+|+++.. .+...+...+..+.+.+..| .+.+.+..+++|+.+
T Consensus 15 ~lf~~a~~~~~~~v~~~~---~~~~~v~~~~~~~N~~~~~P---L~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 15 TLFRLARRLAYRGVDQEE---QFRQEVLSLAQAINSNFSPP---LPESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHHHhCCCHhH---HHHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHH
Confidence 456667677778888888 44444444444444432334 467788888888764
No 100
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=30.25 E-value=44 Score=19.47 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHH
Q psy14917 389 GGGAVEAALSIYL 401 (407)
Q Consensus 389 GGG~~E~~la~~l 401 (407)
|||+.+..++..|
T Consensus 2 GGGai~~~~A~Ll 14 (27)
T TIGR03867 2 GGGAIAPWLAALL 14 (27)
T ss_pred CCchhHHHHHHHH
Confidence 8999998888765
No 101
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.36 E-value=1.4e+02 Score=27.58 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=35.1
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecC-------hHHHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVK-------KVDLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~-------~~~l~~ia~~tGa~ 304 (407)
+++|...+|+||+....-.+...++....++.++.--. .+.++.+++++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 47788899999998655555555566666776664221 13578888888853
No 102
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=28.85 E-value=1.5e+02 Score=26.66 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChH----HHHHHHHHhCCeecc
Q psy14917 243 ARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKV----DLKRIAKATGASFLT 307 (407)
Q Consensus 243 ~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~----~l~~ia~~tGa~ii~ 307 (407)
+.|++++.+.++.+.+...++.++=-..++.+....-++|+..+-++..- .+-.++.-.|+.++-
T Consensus 53 ~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~ 121 (210)
T PF00809_consen 53 EEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVL 121 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEE
Confidence 35677888888888875566777766667777666666677666665552 344555555665553
No 103
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.75 E-value=1.4e+02 Score=27.18 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHHHHcCCcEEEeCCCCCHH-HHHHHHH-cCceEEEecC-------hHHHHHHHHHhCC
Q psy14917 253 INKILATGANVILVSGGIDDL-CLKYFVE-AGAMAVRRVK-------KVDLKRIAKATGA 303 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~-al~~l~~-~~I~~i~~v~-------~~~l~~ia~~tGa 303 (407)
+++|++.+||+||........ ..+.|.+ .||+++..-. .+.++.+++++|-
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 578888999999987665542 3444544 8887664322 1346778888875
No 104
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=28.57 E-value=1.8e+02 Score=22.67 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHc-CceEEEec
Q psy14917 252 RINKILATGANVILVSGGIDDLCLKYFVEA-GAMAVRRV 289 (407)
Q Consensus 252 ~v~~i~~~~~~lVi~~~~I~~~al~~l~~~-~I~~i~~v 289 (407)
+-+.+...++++|++....+|.-..-|.+. |+.|++|.
T Consensus 49 i~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~DRt 87 (95)
T PF13167_consen 49 IKELIEELDADLVVFDNELSPSQQRNLEKALGVKVIDRT 87 (95)
T ss_pred HHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeeeccc
Confidence 334445678999999888988887766654 77777664
No 105
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=28.11 E-value=86 Score=24.31 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHH-cCceEEE
Q psy14917 249 TKERINKILATG--ANVILVSGGIDDLCLKYFVE-AGAMAVR 287 (407)
Q Consensus 249 l~~~v~~i~~~~--~~lVi~~~~I~~~al~~l~~-~~I~~i~ 287 (407)
+.+++..+...+ ..++++..++++.+.++..+ ++|.++.
T Consensus 66 v~~~~~~~~~~~~~~~iivt~~~~t~~a~~~~~~~~~I~l~d 107 (115)
T PF04471_consen 66 VRQLIGKAKKYGADKGIIVTSSGFTPEAKEFAEKFKNIELID 107 (115)
T ss_dssp HHHHHHHHGGGT-SEEEEE-SSEE-HHHHHHHH---------
T ss_pred HHHHhhhhhccCCCEEEEEECCcCCHHHHHHHHhhccccccc
Confidence 444455555444 45888899999999999998 7755543
No 106
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=27.55 E-value=66 Score=31.33 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCe-EEeCCCHHHHHHHH
Q psy14917 360 DFYCDEMERSIHDALCVVKRVLESKN-LVAGGGAVEAALSI 399 (407)
Q Consensus 360 ~~~l~e~~r~i~dal~~~~~~~~~~~-~vpGGG~~E~~la~ 399 (407)
..+-.|.++.|+.-..++-|+.-+|+ +|.|.|++.+.-|.
T Consensus 42 ~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~Aa 82 (363)
T PF04864_consen 42 WFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAA 82 (363)
T ss_dssp TTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHH
Confidence 56778999999999999999987775 79999999876554
No 107
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=26.79 E-value=67 Score=33.05 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=35.9
Q ss_pred ccCceEEEEeecccccccccCeEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCH
Q psy14917 207 ITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDD 272 (407)
Q Consensus 207 ~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~ 272 (407)
..++|++++|.|-.. +-..|.+.+.+++.++++.|+.+|+.+-..++
T Consensus 161 ~~~arllIlDEPTaa-------------------Lt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E 207 (500)
T COG1129 161 SFDARVLILDEPTAA-------------------LTVKETERLFDLIRRLKAQGVAIIYISHRLDE 207 (500)
T ss_pred hcCCCEEEEcCCccc-------------------CCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 348999999987221 22456777999999999999999999665553
No 108
>KOG1481|consensus
Probab=26.46 E-value=24 Score=33.18 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=34.5
Q ss_pred ecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCC
Q psy14917 334 VCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGG 391 (407)
Q Consensus 334 ~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG 391 (407)
+|+..++.+....+..+|-|+-+..--.--...|. +-|++++|.+.+.|+++|||-
T Consensus 47 IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KD--RvAl~iir~Aee~GkL~~gg~ 102 (391)
T KOG1481|consen 47 IGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKD--RVALYIIRTAEEKGKLVRGGT 102 (391)
T ss_pred hCCCceEEeeccccccccchhhhhhccCCCCChhh--hhHHHHHHHHHHcCCcccCce
Confidence 45666777766666667766644211100011122 238999999999999999973
No 109
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=26.20 E-value=54 Score=27.60 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhh
Q psy14917 362 YCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFA 405 (407)
Q Consensus 362 ~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a 405 (407)
+++|++|++.....=++.++-.-..|.|.|+.-.+-+.+|+.-+
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamS 128 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMS 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 77888888887777666666554467888888777777776543
No 110
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=24.88 E-value=73 Score=20.73 Aligned_cols=33 Identities=9% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Q psy14917 79 LKNADELVKQKIHPTSVISGYRLACKEACKYIQ 111 (407)
Q Consensus 79 l~~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~ 111 (407)
.+++.+|.+.|.+...|.+-|..+..-...+|.
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 567888889998888888777665555544443
No 111
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=24.59 E-value=4e+02 Score=26.31 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCc
Q psy14917 234 DPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA 283 (407)
Q Consensus 234 ~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I 283 (407)
++++++ +.-+-+++++++.+++.|..+++.-.+-....+..+.+.+.
T Consensus 245 sp~~f~---ef~~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~ 291 (378)
T cd03308 245 RPKQFE---KFYWPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPK 291 (378)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCC
Confidence 455654 44566788889999887777676665555555566666543
No 112
>KOG1593|consensus
Probab=24.44 E-value=95 Score=28.95 Aligned_cols=36 Identities=36% Similarity=0.443 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhcCC--eEEeCCCHHHHHHHHHHH
Q psy14917 367 ERSIHDALCVVKRVLESK--NLVAGGGAVEAALSIYLE 402 (407)
Q Consensus 367 ~r~i~dal~~~~~~~~~~--~~vpGGG~~E~~la~~l~ 402 (407)
-|+++||+++.+.+++.. .++.|-|++++.-+.-+.
T Consensus 105 lrrIkdai~vA~~Vleht~HTlLvGe~At~FA~smGf~ 142 (349)
T KOG1593|consen 105 LRRIKDAIRVARHVLEHTQHTLLVGESATAFANSMGFK 142 (349)
T ss_pred HHHHHHHHHHHHHHHhhhheeeeecccHHHHHHhcCCC
Confidence 578999999999999875 388999999998876543
No 113
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.43 E-value=69 Score=32.50 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHHHhhhc
Q psy14917 367 ERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406 (407)
Q Consensus 367 ~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~~l~~~a~ 406 (407)
+|.+.+|+..++++-+ |-+|.|||.-.-.....|+.+++
T Consensus 216 ~~eL~~A~~lik~ak~-PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 216 ERELADAAALIKSAKK-PLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHHhcCC-CEEEecCceeechHHHHHHHHHH
Confidence 4667888888877755 77999999987777777777764
No 114
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.12 E-value=4.6e+02 Score=22.52 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=43.7
Q ss_pred ccCceEEEEeecccccccc-----cCeEE---EecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHH
Q psy14917 207 ITNAKIACLDFSLQKAKMK-----LGVEV---LVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYF 278 (407)
Q Consensus 207 ~~~~kI~l~~~~L~~~~~~-----~~~~~---~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l 278 (407)
-.++||+++.++-...... .+.++ .+++.++ +...++++++.|+++|+- +..+.++.
T Consensus 75 ~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e-----------~~~~i~~~~~~G~~viVG----g~~~~~~A 139 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSEEE-----------IEAAIKQAKAEGVDVIVG----GGVVCRLA 139 (176)
T ss_dssp CCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSHHH-----------HHHHHHHHHHTT--EEEE----SHHHHHHH
T ss_pred hcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCHHH-----------HHHHHHHHHHcCCcEEEC----CHHHHHHH
Confidence 3457788777653332111 12222 3555555 678899999999999999 45667888
Q ss_pred HHcCceEEEecC
Q psy14917 279 VEAGAMAVRRVK 290 (407)
Q Consensus 279 ~~~~I~~i~~v~ 290 (407)
.+.|+.++---+
T Consensus 140 ~~~gl~~v~i~s 151 (176)
T PF06506_consen 140 RKLGLPGVLIES 151 (176)
T ss_dssp HHTTSEEEESS-
T ss_pred HHcCCcEEEEEe
Confidence 999999887655
No 115
>PLN02540 methylenetetrahydrofolate reductase
Probab=23.57 E-value=2.4e+02 Score=29.58 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCCCHHH-HHHHH---HcC--ceEE----EecChHHHHHHHHHhCCeeccc
Q psy14917 245 ESDITKERINKILATGANVILVSGGIDDLC-LKYFV---EAG--AMAV----RRVKKVDLKRIAKATGASFLTS 308 (407)
Q Consensus 245 E~~~l~~~v~~i~~~~~~lVi~~~~I~~~a-l~~l~---~~~--I~~i----~~v~~~~l~~ia~~tGa~ii~~ 308 (407)
+.++|+++++. |++.+++|--.|... .+|+. +.| ++++ --.+...++|+++++|+.|=..
T Consensus 158 dl~~Lk~KvdA----GAdFiITQlfFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 158 DLAYLKEKVDA----GADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHHHHc----CCCEEeeccccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 44556655554 999999999999666 33443 456 3333 3556678888998888876544
No 116
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=23.56 E-value=4e+02 Score=25.61 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC----------------CCCCHHHHHHHHHcC----ceEEEecCh
Q psy14917 232 VNDPEKLDGIRARESDITKERINKILATGANVILVS----------------GGIDDLCLKYFVEAG----AMAVRRVKK 291 (407)
Q Consensus 232 i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~----------------~~I~~~al~~l~~~~----I~~i~~v~~ 291 (407)
+..++.+.++.+.-.+.+.++++..++.|++++... +.-...+.+.+.+.+ |+-+..=..
T Consensus 162 ~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~ 241 (335)
T cd00717 162 YTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKGAG 241 (335)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCH
Q ss_pred HHHHHHHHHhCCeeccccCCCCCccccCCCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHH
Q psy14917 292 VDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIH 371 (407)
Q Consensus 292 ~~l~~ia~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~ 371 (407)
..++.++.+ |+.+++--.. .+ +..+.... +++.+...+.+.. +|.|+.+.+.+++++.+.
T Consensus 242 ~~~~~~~~~-~~~~~s~d~~---~d------l~e~k~~~-----g~~~~i~Gni~p~-----~l~~~~e~i~~~v~~~l~ 301 (335)
T cd00717 242 GLLEDLAQL-GADVVGLDWR---VD------LDEARKRL-----GPKVALQGNLDPA-----LLYAPKEAIEKEVKRILK 301 (335)
T ss_pred HHHHHHHhc-CCCEEEeCCC---CC------HHHHHHHh-----CCCeEEEeCCChh-----hhcCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcCCeEEeCCCH
Q psy14917 372 DALCVVKRVLESKNLVAGGGA 392 (407)
Q Consensus 372 dal~~~~~~~~~~~~vpGGG~ 392 (407)
.+-. ++.++..-||
T Consensus 302 ~~~~-------~~gfIl~~gc 315 (335)
T cd00717 302 AFGG-------APGHIFNLGH 315 (335)
T ss_pred HhCc-------CCCceeecCC
No 117
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=23.18 E-value=1.2e+02 Score=20.43 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHH
Q psy14917 77 ELLKNADELVKQKIHPTSVISGY 99 (407)
Q Consensus 77 ~ll~~~~~li~~gi~p~~I~~~~ 99 (407)
+-|+-+.+|++.|++|..+..-.
T Consensus 22 etL~ici~L~e~GVnPeaLA~vI 44 (48)
T PF12554_consen 22 ETLSICIELCENGVNPEALAAVI 44 (48)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH
Confidence 34556677888888887665443
No 118
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=22.93 E-value=1.4e+02 Score=28.23 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCCHHHH-HHHH---HcCc--eEE----EecChHHHHHHHHHhCCeeccc
Q psy14917 246 SDITKERINKILATGANVILVSGGIDDLCL-KYFV---EAGA--MAV----RRVKKVDLKRIAKATGASFLTS 308 (407)
Q Consensus 246 ~~~l~~~v~~i~~~~~~lVi~~~~I~~~al-~~l~---~~~I--~~i----~~v~~~~l~~ia~~tGa~ii~~ 308 (407)
.++++++++ .|++.+++|-..|.... +|+. +.|| +++ --.+...+.+++.++|+.+=..
T Consensus 151 ~~~L~~Ki~----aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~ 219 (281)
T TIGR00677 151 LKYLKEKVD----AGADFIITQLFYDVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKIPQE 219 (281)
T ss_pred HHHHHHHHH----cCCCEeeccceecHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCCCHH
Confidence 445555554 79999999999997774 3433 3442 222 2334557888888888876443
No 119
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=22.19 E-value=3.2e+02 Score=26.29 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHcCceEEEe
Q psy14917 245 ESDITKERINKILATGANVILVSGGI--DDLCLKYFVEAGAMAVRR 288 (407)
Q Consensus 245 E~~~l~~~v~~i~~~~~~lVi~~~~I--~~~al~~l~~~~I~~i~~ 288 (407)
-.+.-++.++++.+.++++++...+. ++.....+.+++|++++-
T Consensus 67 ~~e~~~~~~~~~~~~~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t 112 (304)
T TIGR00679 67 PEEEQKQIIHNLLTLNPPAIILSKSFTDPTVLLQVNETYQVPILKT 112 (304)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEe
Confidence 33445678899999999988777554 668888999999998863
No 120
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=22.02 E-value=4.8e+02 Score=25.18 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCceEEEecChH-HHHHHHHHhCC
Q psy14917 234 DPEKLDGIRARESDITKERINKILAT-GANVILVSGGIDDLCLKYFVEAGAMAVRRVKKV-DLKRIAKATGA 303 (407)
Q Consensus 234 ~~~~~~~~~~~E~~~l~~~v~~i~~~-~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~-~l~~ia~~tGa 303 (407)
++++++++ -.-+++++++.+++. +..+++...+-....+..+.+.|+-++.--... +++.+.+..|.
T Consensus 188 Spe~f~ef---v~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~ 256 (321)
T cd03309 188 SPATFREF---ILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGD 256 (321)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCC
Confidence 45665444 455678888888876 444555444433344566666666555433332 55555554443
No 121
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=21.85 E-value=1.7e+02 Score=26.63 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=33.1
Q ss_pred cCceEEEEeecccccccccCeEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCC
Q psy14917 208 TNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGID 271 (407)
Q Consensus 208 ~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~ 271 (407)
.+|+.++++.|+.--.+ -.+.+ +++++..|++.|..++|+.-.|-
T Consensus 156 ~~P~fiLLDEPFAGVDP--------iaV~d-----------Iq~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 156 ANPKFILLDEPFAGVDP--------IAVID-----------IQRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred cCCCEEEecCCccCCCc--------hhHHH-----------HHHHHHHHHhCCceEEEccccHH
Confidence 49999999998764211 12334 67889999999999999965553
No 122
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=21.79 E-value=1.7e+02 Score=27.24 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=37.8
Q ss_pred HHHHHHcCCcEEEeCCCCC-----HHHHHHHHHcCceEEEec----------Ch----HHHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGGID-----DLCLKYFVEAGAMAVRRV----------KK----VDLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~-----~~al~~l~~~~I~~i~~v----------~~----~~l~~ia~~tGa~ 304 (407)
+++|.+++|++||...... ....+.|.+.||.++.-- .- +.++.+++++|..
T Consensus 72 ~E~I~~l~PDlIi~~~~~~~~~~~~~~~~~L~~~gipv~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~e 142 (284)
T cd01148 72 KETVLAARPDLVFGGWSYGFDKGGLGTPDSLAELGIKTYILPESCGQRRGEATLDDVYNDIRNLGKIFDVE 142 (284)
T ss_pred HHHHhcCCCCEEEEecccccCCCCCCCHHHHHHCCCeEEECchhccCCCCCCCHHHHHHHHHHHHHHhCCH
Confidence 6788999999999964432 234678999999887653 11 2478888888874
No 123
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=21.79 E-value=3.2e+02 Score=25.50 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCCC-HHHHHHHH---HcC--ceEE----EecChHHHHHHHHHhCCeeccc
Q psy14917 245 ESDITKERINKILATGANVILVSGGID-DLCLKYFV---EAG--AMAV----RRVKKVDLKRIAKATGASFLTS 308 (407)
Q Consensus 245 E~~~l~~~v~~i~~~~~~lVi~~~~I~-~~al~~l~---~~~--I~~i----~~v~~~~l~~ia~~tGa~ii~~ 308 (407)
|.++++++++. |++.+++|-..| +.+.+|+. +.| ++++ --.+...+++++..+|..+=..
T Consensus 149 ~~~~L~~Ki~a----GA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~ 218 (274)
T cd00537 149 DIKRLKRKVDA----GADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDW 218 (274)
T ss_pred HHHHHHHHHHC----CCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHH
Confidence 34445555543 999999999999 44444443 455 3333 3456789999999888765544
No 124
>PRK04247 hypothetical protein; Provisional
Probab=21.29 E-value=2.4e+02 Score=26.00 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=26.1
Q ss_pred cCCcEEEeCCCCCHHHHHHHHHcCceEEE
Q psy14917 259 TGANVILVSGGIDDLCLKYFVEAGAMAVR 287 (407)
Q Consensus 259 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~ 287 (407)
..+.-|+++.+|++.|..+|.++|+-++.
T Consensus 204 ~~VRGilvAp~i~~~A~~ll~~~Gle~~~ 232 (238)
T PRK04247 204 DKVRGILVAPSITDRARRLLEKEGLEFVK 232 (238)
T ss_pred CCcEEEEECCcCCHHHHHHHHHcCCeEEE
Confidence 46788999999999999999999998765
No 125
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=21.09 E-value=2.4e+02 Score=26.40 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=39.7
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEec------ChHHHHHHHHHhCCe
Q psy14917 253 INKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRV------KKVDLKRIAKATGAS 304 (407)
Q Consensus 253 v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v------~~~~l~~ia~~tGa~ 304 (407)
+++|...+|++|+....-.+....-+.+.+++++.-- -.+.++.+++++|-.
T Consensus 108 ~E~i~~lkPDlIi~~~~~~~~~~~~~~~~~~pvv~~~~~~~~~~~~~i~~lg~~~g~e 165 (319)
T COG0614 108 LEKIVALKPDLIIASSSSQDDLIYKLLSLGAPVVVVDYGSLDDIKEQIRLLGKALGKE 165 (319)
T ss_pred HHHhhhcCCCEEEEecccchhHHHHHHhcCCCEEEECCcchhhHHHHHHHHHHHhCcH
Confidence 6888999999999988855566667777888876532 345778888888875
No 126
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=20.40 E-value=3.9e+02 Score=25.73 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHcCceEEEec
Q psy14917 237 KLDGIRARESDITKERINKILATGANVILVSGGI--DDLCLKYFVEAGAMAVRRV 289 (407)
Q Consensus 237 ~~~~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I--~~~al~~l~~~~I~~i~~v 289 (407)
++..+.....+..++.++++.+.++++++...+. ++...+.+.+++|++++--
T Consensus 59 E~~yl~~l~~~~r~~~~~~l~~~~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~ 113 (308)
T PRK05428 59 EISYLNQLSEEERKERLKKLFSLEPPCIIVTRGLEPPPELLEAAKEAGIPLLRTP 113 (308)
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHcCCcEEEeC
Confidence 3444444445556788899999999988887655 6678889999999888733
No 127
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=20.27 E-value=2.4e+02 Score=24.47 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCce---EEEec--ChHHH--HHHHHHhCC
Q psy14917 249 TKERINKILATGANVILVSGGIDDLCLKYFVEAGAM---AVRRV--KKVDL--KRIAKATGA 303 (407)
Q Consensus 249 l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~---~i~~v--~~~~l--~~ia~~tGa 303 (407)
..+.++.|.+.|+.+.++.++-...+...+.+.||. ++.++ +.+.= .++.+..+.
T Consensus 132 ~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 132 AKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp HHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhc
Confidence 467788899999999999999999999999999994 88888 76655 777776654
No 128
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=20.23 E-value=1.2e+02 Score=21.41 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=18.0
Q ss_pred CCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhh
Q psy14917 26 DIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61 (407)
Q Consensus 26 ~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~ 61 (407)
+.|...+..-|+.|.+.++=.+.+..++..++...+
T Consensus 9 ~~~~~~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~y~ 44 (68)
T PF05402_consen 9 ESGEFTLNETAAFIWELLDGPRTVEEIVDALAEEYD 44 (68)
T ss_dssp --------THHHHHHHH--SSS-HHHHHHHHHHHTT
T ss_pred CCCCccccHHHHHHHHHccCCCCHHHHHHHHHHHcC
Confidence 344567777788888888766777777776666543
No 129
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=20.19 E-value=5e+02 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHcCc---eEEEecChHHHHHHHHHh
Q psy14917 270 IDDLCLKYFVEAGA---MAVRRVKKVDLKRIAKAT 301 (407)
Q Consensus 270 I~~~al~~l~~~~I---~~i~~v~~~~l~~ia~~t 301 (407)
....+.+++.+.|+ .+=..++.++++.|++.+
T Consensus 48 ~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~ 82 (233)
T PF01136_consen 48 FNSESARFLKELGASRITLSPELSLEEIKEIAENS 82 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCHHHHHHHHHhC
Confidence 36777777777765 344678999999999998
No 130
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=20.17 E-value=2.3e+02 Score=26.76 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCc
Q psy14917 249 TKERINKILATGANVILVSGGIDDLCLKYFVEAGA 283 (407)
Q Consensus 249 l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I 283 (407)
+.++++.+.+.|+++.+++.+..+.+...|.+.|+
T Consensus 126 ~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 126 YENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred HHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 56788899999999999999999999999998876
No 131
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=20.15 E-value=59 Score=22.82 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=18.7
Q ss_pred hcCCCCCCceEEEcCCCC---eEEecCHHHHH
Q psy14917 12 SSLGPVGLDKMLVDDIGD---VTVTNDGATIL 40 (407)
Q Consensus 12 sslGP~G~~k~i~~~~g~---~~iTndg~tIl 40 (407)
+.|||.| +++++.+|. ..+|..|.-||
T Consensus 32 ~Lfgg~~--~i~I~H~Ga~Y~lr~Tr~GKLiL 61 (63)
T COG4256 32 TLFGGDG--KIIIDHDGAEYLLRKTRAGKLIL 61 (63)
T ss_pred hcccCCC--eEEEecCCceEEEeeeecceeee
Confidence 4577765 678888876 46777776665
Done!