RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14917
(407 letters)
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 768 bits (1986), Expect = 0.0
Identities = 313/407 (76%), Positives = 357/407 (87%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA AIANIVKSSLGPVGLDKMLVDDIGDVT+TNDGATIL+LLEVEHPAA++LVELAQLQ
Sbjct: 15 TAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQ 74
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+EVGDGTTSVVI+AAELLK A+ELVKQKIHPT++ISGYRLACKEA KYI++ L+ISVD
Sbjct: 75 DKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDN 134
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
LGKE LIN AKTSMSSK+IG D +FFA MVVDA A+K T + G YPIKA+N+LKAHG
Sbjct: 135 LGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
KSA+ES LV GYALNCT ASQ M ++ NAKIACLDF+LQK KMKLGV+V+V DPEKL+
Sbjct: 195 KSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEK 254
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
IR RESDITKERI KILA GANV+L +GGIDD+CLKYFVEAGAMAVRRVKK DL+RIAKA
Sbjct: 255 IRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKA 314
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ +++L+N+EGEE+F+ S LGEA EVVQ ++ DDELILI G K R++ASIILRG ND
Sbjct: 315 TGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGAND 374
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
F DEMERS+HDALCVVKR LES ++V GGGAVE ALSIYLENFATT
Sbjct: 375 FMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATT 421
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 709 bits (1831), Expect = 0.0
Identities = 300/407 (73%), Positives = 352/407 (86%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
A A+ANIVK+SLGPVGLDKMLVDDIGDVT+TNDGATIL+LLEVEHPAA++LVELAQLQ
Sbjct: 19 TATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQ 78
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D EVGDGTTSVVI+AAELLK A+ELVK K+HPTS+ISGYRLA KEA KYI++ L++SVD
Sbjct: 79 DREVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEAVKYIKENLSVSVDT 138
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
LGKE LIN AKTSMSSK+IG D +FF+ +VVDA A+K T ++G + YPIKA+N+LKAHG
Sbjct: 139 LGKEALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENGEIKYPIKAVNILKAHG 198
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
KSARES LV+GYALNCT ASQ M K+I AKIACLDF+LQKAKM LGV+++V+DP KL+
Sbjct: 199 KSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKAKMALGVQIVVDDPAKLEQ 258
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
IR RE+DITKERI KIL GANV+L +GGIDD+CLKYFVEAGAM VRR KK DLKRIAKA
Sbjct: 259 IRQREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKA 318
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TG + +++L+++EGEE+F+AS LG A EVVQ ++ DDE ILI G K R++ASIILRG ND
Sbjct: 319 TGGTLVSTLADLEGEETFDASYLGFADEVVQERIADDECILIKGTKKRSSASIILRGAND 378
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
F DEMERS+HDALCVVKR LES ++V GGGAVEAALSIYLENFATT
Sbjct: 379 FMLDEMERSLHDALCVVKRTLESNSVVPGGGAVEAALSIYLENFATT 425
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 416 bits (1073), Expect = e-144
Identities = 163/407 (40%), Positives = 228/407 (56%), Gaps = 52/407 (12%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA A+A+ VK++LGP G+DKMLVD +GD T+TNDGATIL+ +EVEHPAA++LVE+A+ Q
Sbjct: 15 NAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQ 74
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+EVGDGTT+VV++A ELLK A++L+ IHPT +I GY A ++A + + +++ + +D
Sbjct: 75 DDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEIL-KEIAVPIDV 133
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E L+ A TS++SKL+ D+F +VVDA + + I + K G
Sbjct: 134 EDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG----DVDLGVIRVEKKKG 189
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S +S LV G + S M K++ NAKI LD L+
Sbjct: 190 GSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLE-------------------- 229
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
V++ GIDD L Y + G MAVRRV+K DL+RIAKA
Sbjct: 230 ---------------------YVVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKA 268
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ ++ L E LG A V +T++ D++ I G K A+I+LRG +
Sbjct: 269 TGATIVSRL------EDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATE 322
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
DE ERS+HDALC V+ +E +V GGGA E LS LE A T
Sbjct: 323 VELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKT 369
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 365 bits (940), Expect = e-123
Identities = 171/407 (42%), Positives = 260/407 (63%), Gaps = 8/407 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA A+A V+++LGP G+DKMLVD +GDVT+TNDGATIL+ +++EHPAA++LVE+A+ Q
Sbjct: 22 AAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 81
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
DEEVGDGTT+ V++A ELL+ A++L+ Q IHPT +I GYRLA ++A + + ++ I VD
Sbjct: 82 DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELL-DEIAIKVDP 140
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
K+ L AKTS++ K + A +VVDA + ++ G + I + K G
Sbjct: 141 DDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQV-AEKRDGKYVVDLDNIKIEKKTG 199
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ V M K++ NAKIA LD L+ K ++ ++ + P++L
Sbjct: 200 GSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQA 259
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + KE ++KI TGANV+ GIDDL Y +AG +AVRRVKK D++++A+A
Sbjct: 260 FLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARA 319
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA +T++ ++ E+ LGEA V + +V DD+++ + G K A +I+LRG +
Sbjct: 320 TGAKIVTNIDDLTPED------LGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTE 373
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
DE+ER++ DAL VV LE +VAGGGAVE L+ L +A +
Sbjct: 374 HVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARS 420
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 363 bits (933), Expect = e-122
Identities = 157/403 (38%), Positives = 241/403 (59%), Gaps = 20/403 (4%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVG 65
+A+ VK++LGP G +KMLV+ G +T+TNDGATIL+ +E++HPAA++LVE A+ QDEEVG
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPAAKLLVEAAKSQDEEVG 60
Query: 66 DGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQ-LTISVDELGKE 124
DGTT+ V++A ELL+ A++L++ IHPT +I GY LA + A K +++ + +S D+ E
Sbjct: 61 DGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD---E 117
Query: 125 CLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSAR 184
L+N A+TS++SK+ + +VVDA I + I ++K G S
Sbjct: 118 DLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFD-------VGNIGVIKIEGGSLE 170
Query: 185 ESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRAR 244
+S L++G L+ S M K++ N KI LD L+ K + + + E+L
Sbjct: 171 DSELIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERL---LEA 227
Query: 245 ESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGAS 304
E + KI+ G N++++ GIDDL L + + G +A+RRVKK DL+R+AKATGA+
Sbjct: 228 EEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRVKKEDLERLAKATGAT 287
Query: 305 FLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCD 364
++SL + E LG A +V + ++ +D+ I G + A+I+LRG D D
Sbjct: 288 VVSSL------DDLEPDELGSAGKVEEREIGEDKTTFIEGCLSGKVATILLRGATDHELD 341
Query: 365 EMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
E+ER+I DAL VK L+ + +V GGGA E LS L +A +
Sbjct: 342 ELERAIEDALNAVKAALKDEGVVPGGGAAELELSRALREYAKS 384
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 340 bits (874), Expect = e-113
Identities = 166/408 (40%), Positives = 257/408 (62%), Gaps = 8/408 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA A+A VKS+LGP G+DKMLVD +GDVT+TNDGATIL+ +++EHPAA++LVE+A+ Q
Sbjct: 23 AAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
DEEVGDGTT+ V++A ELL+ A++L++Q IHPT +I GYR A ++A + I ++ +
Sbjct: 83 DEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKALEII-DEIATKISP 141
Query: 121 LGKECLINAAKTSMSSKLIGPDDN-FFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
++ L A+TS++SK A +VV+A + + G + I ++K
Sbjct: 142 EDRDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAELRGDGKYYVDLDNIKIVKKT 201
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
G S ++ LV+G ++ V M K++ NAKIA LD L+ K ++ E+ + DP+++
Sbjct: 202 GGSIDDTELVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEIDAEIRITDPDQIQ 261
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAK 299
+E + KE ++KI GANV++ GIDD+ Y +AG +AVRRVKK D++++A+
Sbjct: 262 KFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAKAGILAVRRVKKSDIEKLAR 321
Query: 300 ATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPN 359
ATGA ++S+ + S LG A V + +V +D+++ + G K A +I+LRG
Sbjct: 322 ATGARIVSSIDEI------TESDLGYAGLVEERKVGEDKMVFVEGCKNPKAVTILLRGGT 375
Query: 360 DFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
+ DE+ERS+ DAL VV LE +VAGGGAVE +++ L ++A
Sbjct: 376 EHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEIALRLRSYARK 423
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 336 bits (864), Expect = e-111
Identities = 152/414 (36%), Positives = 231/414 (55%), Gaps = 21/414 (5%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA A+A+ VK++LGP G +KMLVD GD+T+TNDG TIL+ +E+EHP A++LVE+A+ Q
Sbjct: 18 RAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQ 77
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+E GDGTT+ V++A LLK A++L+ IHPT + GYRLA ++A + +++ I+
Sbjct: 78 DDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKE---IAKPV 134
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
E + A TS++SK D +VV+A EK G + I ++K G
Sbjct: 135 SDSEEELKIAITSVASKSAN-SDEEIGELVVEA------VEKVGKEQSDLDGIIIVKESG 187
Query: 181 KSARESVLVQGYALNCTVASQAM--KKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238
S E +V+G + S K++ N KI LD L+ K +L +E++++ + L
Sbjct: 188 GSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPL 247
Query: 239 DGIRARE-SDITKERINKILATGANVILV-SGGIDDLCLKYFVEAGAMAVRRVKKVDL-K 295
I E + + IL GANV++V + GIDDL Y + + RRVKK DL +
Sbjct: 248 LIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGE 307
Query: 296 RIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART--AASI 353
R+AK GA ++ L ++ E G A V +T+ D ++ + KA+ A+I
Sbjct: 308 RLAKLGGAKIVSVLKDLTTIVLGE----GAAGLVEETKTGDYDMEKLQERKAKAGGVATI 363
Query: 354 ILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
++RG + DE ER I DAL VV+ +E +V GGGA E ++ L +A T
Sbjct: 364 LVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMT 417
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 321 bits (824), Expect = e-105
Identities = 164/414 (39%), Positives = 243/414 (58%), Gaps = 23/414 (5%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
A AIA+ V+++LGP G+DK++VD G VT++NDGATIL+LL++ HPAA+ LV++A+ QD
Sbjct: 24 ACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQD 83
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD-- 119
EVGDGTTSVV++A E LK A ++ +HP +I GYR A + A + I +++ +++D
Sbjct: 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKI-KEIAVNIDKE 142
Query: 120 --ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLK 177
E +E L A T+++SKLI + FFA MVVDA ++ + I + K
Sbjct: 143 DKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDL-------DLDMIGIKK 195
Query: 178 AHGKSARESVLVQGYALNCTVAS---QAMKKKITNAKIACLDFSLQKAKMKLGVEVLVND 234
G S +S LV G A T + + KK N KI L+ L+ K EV V D
Sbjct: 196 VPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVED 255
Query: 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDL 294
PE+ I E I +++ KI+ +GANV+L I DL +YF + RV + DL
Sbjct: 256 PEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDL 315
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDEL-ILINGPKARTAASI 353
KR+A+ATG S T++SN+ LG + QV + I PKA+T +I
Sbjct: 316 KRVAQATGGSIQTTVSNI------TDDVLGTCGLFEERQVGGERYNIFTGCPKAKT-CTI 368
Query: 354 ILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
ILRG + + +E ERS+HDA+ +V+R +++ ++VAGGGA+E LS YL +++ T
Sbjct: 369 ILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRT 422
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 290 bits (745), Expect = 9e-94
Identities = 158/413 (38%), Positives = 238/413 (57%), Gaps = 21/413 (5%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
A AIA +K++LGP G+DK++V G TV+NDGATIL+LL++ HPAA+ LV++A+ QD
Sbjct: 26 ACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHPAAKTLVDIAKSQD 85
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
EVGDGTTSVVI+A ELLK A +++ +HP +I GYR A A + I +++ +++D
Sbjct: 86 SEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKI-KEIAVTIDSE 144
Query: 122 ---GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKA 178
+E L A T++SSKLI + FF+ M+VDA ++ + +K I + K
Sbjct: 145 KGEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAVLSLDRDDLD------LKLIGVKKV 198
Query: 179 HGKSARESVLVQGYALNCTVAS---QAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDP 235
G + +SVLV G A T + + KK N KI L+ L+ K E+ V D
Sbjct: 199 QGGALEDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDV 258
Query: 236 EKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLK 295
E I E I E++ KI+ +GAN++L I DL +YF + RV D+K
Sbjct: 259 EDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLPIGDLATQYFADHNIFCAGRVSAEDMK 318
Query: 296 RIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDEL-ILINGPKARTAASII 354
R+ KA G S ++ S++E + LG A + Q+ + + P A+T +II
Sbjct: 319 RVIKACGGSIQSTTSDLEAD------VLGTCALFEERQIGSERYNLFTGCPHAKT-CTII 371
Query: 355 LRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
LRG + + +E ERS+HDA+ +V+R L++K +VAGGGA+E LS L +++ T
Sbjct: 372 LRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRDYSKT 424
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 286 bits (735), Expect = 3e-92
Identities = 140/414 (33%), Positives = 229/414 (55%), Gaps = 16/414 (3%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA A+A+ +++SLGP G+DKM+ G+V +TNDGATIL+ + V HPAA++LVEL++ Q
Sbjct: 15 QAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQ 74
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D E GDGTTSVV++A LL + L+K+ IHPT + +++A K+A + + ++I VD
Sbjct: 75 DIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEIL-DSMSIPVDL 133
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E LI +A TS++SK++ + A + VDA + + NV +K I ++K G
Sbjct: 134 NDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVD--LKDIRIVKKLG 191
Query: 181 KSARESVLVQGYALNCTVASQA-MKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
+ ++ LV G + +A +I AKI + F L K + ++VND ++D
Sbjct: 192 GTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMD 251
Query: 240 GIRARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVDL 294
I E KI +G NV+L+ I DL L + + M V+ +++ ++
Sbjct: 252 RILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEI 311
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILING-PKARTAASI 353
+ I K G + S+ + F LG A V + + D +++ I G +I
Sbjct: 312 EFICKTIGCKPVASI------DHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTI 365
Query: 354 ILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
++RG N DE ERS+HDALCV++ +++ + L+ GGGA E +++ L +A T
Sbjct: 366 LVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWART 419
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 270 bits (692), Expect = 9e-86
Identities = 143/414 (34%), Positives = 229/414 (55%), Gaps = 22/414 (5%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA ++ANI+++SLGP G+DK+LV G+VTVTNDGATIL ++V+H A++LVEL++ Q
Sbjct: 30 LAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQ 89
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ-QLTISVD 119
D+E+GDGTT VV++A LL+ A++L+ + IHP + GY ACK A +++++ I
Sbjct: 90 DDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFS 149
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAIN--LLK 177
KE LI A TS+ SK++ FA + VDA ++ E+ K +N L+K
Sbjct: 150 PDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLER--------KDVNFELIK 201
Query: 178 AHGKSAR---ESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVND 234
GK ++ LV+G ++ + M K++ +AKIA L + K K ++ +
Sbjct: 202 VEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITS 261
Query: 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDL 294
E ++ E +E + ++ GAN+++ G DD ++ G AVR V V++
Sbjct: 262 VEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEI 321
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEV--VQTQVCDDELILINGPKARTAAS 352
+ IA ATG + E LG+A V + D++++I G A +
Sbjct: 322 ELIAIATGGRIVPRF------EDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVT 375
Query: 353 IILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406
I +RG N +E +RS+HDALCVV+ ++ +V GGGA E + S+ +E A
Sbjct: 376 IFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAAD 429
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 262 bits (672), Expect = 6e-83
Identities = 143/414 (34%), Positives = 232/414 (56%), Gaps = 16/414 (3%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA A+A+ +++SLGP G+DKM+ D G+V +TNDGATIL+ + V HPAA++LVEL++ Q
Sbjct: 16 VAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPAAKMLVELSKAQ 75
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D E GDGTTSVVI+A LL + L+ + IHPT + ++ A EA K I +++I VD
Sbjct: 76 DIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIK-ILDEMSIPVDL 134
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E L+ +A TS+SSK++ + A + VDA + E + NV + I ++K G
Sbjct: 135 SDREQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENAKNVD--LNDIKVVKKLG 192
Query: 181 KSARESVLVQGYALNCTVASQA-MKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
+ ++ L++G + A +I AKI + F + K + +++VND ++D
Sbjct: 193 GTIDDTELIEGLVFTQKASKSAGGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMD 252
Query: 240 GIRARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVDL 294
+ E + KI TG NV+L+ I +DL L + + M V+ +++ ++
Sbjct: 253 RVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEI 312
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILING-PKARTAASI 353
+ I K G + S+ + F A LG A V + ++I I G A ++
Sbjct: 313 EFICKTIGCKPIASI------DHFTADKLGSAELVEEVDSDGGKIIKITGIQNAGKTVTV 366
Query: 354 ILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
++RG N DE ERS+HDALCV++ +++ + L+AGGGA E ++ L +A T
Sbjct: 367 VVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIARRLSKYART 420
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 262 bits (671), Expect = 9e-83
Identities = 154/415 (37%), Positives = 242/415 (58%), Gaps = 25/415 (6%)
Query: 1 MAASAIANIVKSSLGPVGLDKML--VDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQ 58
+ A AI ++VK++LGP G+DK+L V G VTVTNDGATIL+ + V++PAA+VLV++++
Sbjct: 20 VGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISK 79
Query: 59 LQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISV 118
+QD+EVGDGTTSV ++AAELL+ A++LV QKIHP ++I GYR+A A + + L+ +V
Sbjct: 80 VQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREAL---LSSAV 136
Query: 119 D-----ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAI 173
D E +E L+N A+T++SSK++ D FA + VDA +K SGN + AI
Sbjct: 137 DHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLK---GSGN----LDAI 189
Query: 174 NLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVLV 232
++K G S ++S L +G+ L+ + K+I NAKI + + K+K+ G +V V
Sbjct: 190 QIIKKLGGSLKDSYLDEGFLLDKKI-GVNQPKRIENAKILIANTPMDTDKIKIFGAKVRV 248
Query: 233 NDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKV 292
+ K+ I E + K ++ KIL G N + I + + F +AG MA+
Sbjct: 249 DSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFD 308
Query: 293 DLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAAS 352
++R+A TG ++ + E LG + + + +D+LI +G A A +
Sbjct: 309 GVERLALVTGGEIASTFDHP------ELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACT 362
Query: 353 IILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
I+LRG + DE ERS+HDALCV+ + ++ +V GGG E ++ +E A
Sbjct: 363 IVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKK 417
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 259 bits (665), Expect = 1e-81
Identities = 154/418 (36%), Positives = 246/418 (58%), Gaps = 28/418 (6%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLV-----DDIGDVTVTNDGATILRLLEVEHPAARVLVE 55
+ A A+A++VK++LGP G+DK+L G+VTVTNDGATIL+ + +++PAA++LV+
Sbjct: 29 VGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVD 88
Query: 56 LAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLT 115
+++ QDEEVGDGTTSVV++A ELL+ A++L+ QKIHP ++I G+R+A A K ++
Sbjct: 89 ISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALE---E 145
Query: 116 ISVD-----ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPI 170
I+ D E KE L+N A+T++SSKL+ + + FA + VDA +K SGN+ Y
Sbjct: 146 IAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLK---GSGNLDY-- 200
Query: 171 KAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVE 229
I ++K G + R+S L G+ L + K++ N KI + + K+K+ G +
Sbjct: 201 --IQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPMDTDKIKIYGAK 257
Query: 230 VLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRV 289
V V+ EK+ I A E + K +++KILA G NV + I + + F EAG MA+
Sbjct: 258 VKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHA 317
Query: 290 KKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART 349
++R+A A GA +++ ++ E LG + + + +D+LI +G
Sbjct: 318 DFDGMERLAAALGAEIVSTF------DTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGE 371
Query: 350 AASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
A +I+LRG + DE ERS+HDALCV+ + ++ +V GGG E ++ +E A
Sbjct: 372 ACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKK 429
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 259 bits (664), Expect = 1e-81
Identities = 140/409 (34%), Positives = 231/409 (56%), Gaps = 12/409 (2%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA ++A+I+++SLGP G+DKML+ GD+TVTNDGATIL ++V++P A+++VEL++ Q
Sbjct: 34 AAAKSVASILRTSLGPKGMDKMLISPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQ 93
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ-QLTISVD 119
D+E+GDGTT VV++A LL+ A+EL+ + IHP + G+ A + A +++++ IS D
Sbjct: 94 DDEIGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLEEISDEISAD 153
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
+E LI AAKTS+ SK++ FA + VDA + E+ +V + + I +
Sbjct: 154 NNNREPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLNVADMERR-DVDFDL--IKVEGKV 210
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
G S ++ L++G ++ + M K++ +AKIA L + K K ++ ++ E+
Sbjct: 211 GGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYK 270
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAK 299
++ E KE I+ I +GAN+++ G DD ++ AVR V +L+ IA
Sbjct: 271 KLQKYEQQKFKEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGQELELIAI 330
Query: 300 ATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQ--VCDDELILINGPKARTAASIILRG 357
ATG + + LG+A V + D +++I K A +I +RG
Sbjct: 331 ATGGRIVPRF------QELSKDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRG 384
Query: 358 PNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406
N +E +RSIHDALCVV+ +++ +V GGGA E + S+ + A
Sbjct: 385 GNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAVSQEAD 433
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 242 bits (620), Expect = 1e-75
Identities = 131/409 (32%), Positives = 212/409 (51%), Gaps = 50/409 (12%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA +A+++++ LGP + KML+D +G + +TNDG ILR ++V HPAA+ ++EL++ Q
Sbjct: 23 QAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
DEEVGDGTTSV+I+A E+L A+ +++ IHPT +I YR A ++A K + ++++I VD
Sbjct: 83 DEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKIL-EEISIPVDV 141
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKA-INLLKAH 179
+ ++ K+ + +K + + + +DA + + + E IK + K
Sbjct: 142 NDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIP 201
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
G +S ++ G LN V M+++I N +I LD L E LV
Sbjct: 202 GGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPL---------EYLV------- 245
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAK 299
IT++ G+ DL Y V+AG A+RRV+K D RIA+
Sbjct: 246 --------ITEK-----------------GVSDLAQHYLVKAGITALRRVRKTDNNRIAR 280
Query: 300 ATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDE-LILINGPKARTAASIILRGP 358
A GA T ++ E S +G A + + + DE I K A +I+LRG
Sbjct: 281 ACGA---TIVNR---PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGA 334
Query: 359 NDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
+ +E+ER++ DA+ V + ++ + LV GGGA E A+S L A +
Sbjct: 335 SKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKS 383
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 241 bits (617), Expect = 8e-75
Identities = 129/403 (32%), Positives = 218/403 (54%), Gaps = 9/403 (2%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA A+A+I++++LGP + KML+D +G + +TNDG ILR ++V HPAA+ ++EL++ QD
Sbjct: 24 AAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
EEVGDGTTSV+I+A E+L A+ ++Q IHPT +I Y+ A +A + ++++I VD
Sbjct: 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVL-EEISIPVDVN 142
Query: 122 GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKA-INLLKAHG 180
++ ++ + +K + + + +DA + +K +G IK + K G
Sbjct: 143 DDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPG 202
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+S +++G +N V M++ I N +I LD L+ K + V + E +
Sbjct: 203 GDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNR 262
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
I E + + I+A ++++ G+ DL Y ++A A+RRV+K D RIA+A
Sbjct: 263 ILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARA 322
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDE-LILINGPKARTAASIILRGPN 359
GA+ + E S +G + + + DE K A +I+LRG +
Sbjct: 323 CGATIVNRP------EELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGAS 376
Query: 360 DFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLE 402
+E+ER++ DA+ V + VL L+ GGGA E A+S+YL
Sbjct: 377 KDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLA 419
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 227 bits (579), Expect = 3e-69
Identities = 147/414 (35%), Positives = 233/414 (56%), Gaps = 26/414 (6%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVD-DIGDVTVTNDGATILRLLEVEHPAARVLVELAQL 59
+ A A+ ++VKS+LGP G+DK+L + VTNDGATIL+ + +++PAA+VLV ++++
Sbjct: 21 VGAIAVGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSIGLDNPAAKVLVNISKV 80
Query: 60 QDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD 119
QD+EVGDGTTSV ++AAELL+ A++L+ QKIHP ++I GYRLA K A LT S
Sbjct: 81 QDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYRLATKAA----LDALTKSAV 136
Query: 120 ELG------KECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAI 173
+ +E LIN A+T++SSK++ + FA + VDA +K S N ++AI
Sbjct: 137 DNSSDKTKFREDLINIARTTLSSKILSQHKDHFAQLAVDAVLRLK---GSTN----LEAI 189
Query: 174 NLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVLV 232
++K G +S L +G+ L + K+I NAKI + ++ K+K+ G V V
Sbjct: 190 QIIKILGGKLSDSFLDEGFILAKKIGVN-QPKRIENAKILIANTTMDTDKVKIFGSRVRV 248
Query: 233 NDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKV 292
+ KL + E + KE++ KIL G N + I + + F +AG M++
Sbjct: 249 DSTAKLAELEKAEREKMKEKVEKILKHGINCFINRQLIYNYPEQLFADAGIMSIEHADFE 308
Query: 293 DLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAAS 352
++R+A TG +++ + E LG + + + +D+L+ +G KA A +
Sbjct: 309 GVERLALVTGGEIVSTF------DHPELVKLGSCDLIEEIMIGEDKLLKFSGVKAGEACT 362
Query: 353 IILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFAT 406
I+LRG DE ERS+HDALCV+ + ++ V GGG E +S ++ A
Sbjct: 363 IVLRGATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSKAVDTEAQ 416
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 215 bits (550), Expect = 7e-65
Identities = 129/408 (31%), Positives = 222/408 (54%), Gaps = 14/408 (3%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
A ++ I ++SLGP G++KM+++ + + VTND ATILR LEV+HPAA++LV +++Q+
Sbjct: 26 ACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQE 85
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
E+GDGT V+++A ELL A+EL++ +HP+ +I GY +A K+A + +++ + +++L
Sbjct: 86 NEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDL 145
Query: 122 -GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
K+ LI A K S+SSK G +D F + +V A + + N + + I ++K G
Sbjct: 146 RDKKELIKALKASISSKQYGNED-FLSQLVAKACSTVL-PKNPQN--FNVDNIRVVKIMG 201
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S S +++G N ++ K++ AK+A L A + VL+++ E+L
Sbjct: 202 GSLSNSEVIKGMVFN--REAEGSVKRVKKAKVAVFSCPLDTATTETKGTVLIHNAEELLN 259
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
E + + I I +G NVI+ G + D+ L Y G M ++ K +L+R+ K
Sbjct: 260 YSKGEENQIEAMIKAIADSGVNVIVTGGSVGDMALHYLNRYGIMVLKIPSKFELRRLCKT 319
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTA-ASIILRGPN 359
GA+ L L EE LG V +++ D++ + + ++IILRG
Sbjct: 320 VGATPLPRLGAPTPEE------LGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILRGST 373
Query: 360 DFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
D++ER+I D + VVK +++ + G GA E L+ L +A
Sbjct: 374 KNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKYAEK 421
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 209 bits (535), Expect = 4e-63
Identities = 122/409 (29%), Positives = 206/409 (50%), Gaps = 54/409 (13%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
A ++ I ++S GP G++KM+++ + + VT+D ATILR LEV+HPAA++LV +Q+Q+
Sbjct: 16 ACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQE 75
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTIS--VD 119
EE+GDGT VV++A ELL+ A+EL++ +HP+ +I GY A K+A + I ++L + D
Sbjct: 76 EEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALE-ILEELVVYKIED 134
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
KE + A KT+++SK G +D F + +V +A ++ + E GN + + I ++K
Sbjct: 135 LRNKEEVSKALKTAIASKQYGNED-FLSPLVAEACISV-LPENIGN--FNVDNIRVVKIL 190
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
G S +S +V+G K++ AK+A +
Sbjct: 191 GGSLEDSKVVRGMVFKREPEGSV--KRVKKAKVAVF---------SCPFD---------- 229
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAK 299
G NVI+ G + DL L Y + G M ++ K +L+R+ +
Sbjct: 230 -------------------IGVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCR 270
Query: 300 ATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTA-ASIILRGP 358
GA+ L L EE +G V ++ D ++++ K + A+I+LRG
Sbjct: 271 TVGATPLPRLGAPTPEE------IGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGA 324
Query: 359 NDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
D++ER+I D + V K + + V G GA E L+ L+ +
Sbjct: 325 TQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 199 bits (510), Expect = 1e-62
Identities = 90/261 (34%), Positives = 126/261 (48%), Gaps = 52/261 (19%)
Query: 123 KECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKS 182
+E L+ A TS++SKL DD F +VVDA + + + I + K G S
Sbjct: 1 RELLLQVATTSLNSKLSSWDD-FLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGS 55
Query: 183 ARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIR 242
+S LV G + AS M K++ NAKI LD L+
Sbjct: 56 LEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLE---------------------- 93
Query: 243 ARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATG 302
V++ GIDDL L Y +AG MAVRRVKK DL+RIA+ATG
Sbjct: 94 -------------------YVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATG 134
Query: 303 ASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFY 362
A+ ++SL E LG A V +T++ +++L I G K AA+I+LRG +
Sbjct: 135 ATIVSSL------EDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVE 188
Query: 363 CDEMERSIHDALCVVKRVLES 383
DE++RS+HDALC V+ +E
Sbjct: 189 LDEVKRSLHDALCAVRAAVEE 209
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 198 bits (504), Expect = 4e-58
Identities = 121/414 (29%), Positives = 213/414 (51%), Gaps = 20/414 (4%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA + +++K++LGP G KMLV GD+ +T DG +L ++++HP A ++ A QD
Sbjct: 24 AARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQD 83
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
E GDGTTS VI+ ELLK A+ + + +HP + G+ +A KE +++ + + DE+
Sbjct: 84 EITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKFKVKTEDEV 143
Query: 122 GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGK 181
+E L+N A+TS+ +KL + +VVDA AIK + + + + +++ K
Sbjct: 144 DREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEDID----LFMVEIMEMKHK 199
Query: 182 SARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGI 241
SA ++ L++G L+ M +++ NA I + SL+ K ++ + E+ + +
Sbjct: 200 SATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSSAEQREKL 259
Query: 242 RARESDITKERINKILATGANVILVSG----------GIDDLCLKYFVEAGAMAVRRVKK 291
A E +R+ KI+ V S GID L + G +A+RR K+
Sbjct: 260 VAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGILALRRAKR 319
Query: 292 VDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAA 351
+++R+ A G L S+ ++ E LG A V +T + +++ I K +
Sbjct: 320 RNMERLTLACGGEALNSVEDLTPE------CLGWAGLVYETTIGEEKYTFIEEVKNPKSC 373
Query: 352 SIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFA 405
+I+++GPND +++ ++ D L VK +E K +V G GA E A +L+
Sbjct: 374 TILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKENK 427
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 196 bits (501), Expect = 5e-58
Identities = 113/408 (27%), Positives = 202/408 (49%), Gaps = 43/408 (10%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQD 61
AA + +++K++LGP G KMLV GD+ +T DG +L ++++HP A ++ A QD
Sbjct: 20 AAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQD 79
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
+ GDGTTS V++ ELLK A+ +++ +HP + G+ LA +A K+++ +
Sbjct: 80 DITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDT 139
Query: 122 GKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIK--AINLLKAH 179
+E L++ A+TS+ +KL + +VVDA AI ++ PI + +++
Sbjct: 140 DRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDE------PIDLHMVEIMQMQ 193
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
KS ++ L++G L+ M K++ NA I + SL+ K
Sbjct: 194 HKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEK---------------- 237
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAK 299
+++ V++ GID L + G +A+RR K+ +++R+
Sbjct: 238 ------TEVNSGFFYS-------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTL 284
Query: 300 ATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPN 359
A G + S+ ++ E LG A V + + +++ I G K + +I+++GPN
Sbjct: 285 ACGGVAMNSVDDLSPE------CLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPN 338
Query: 360 DFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
D +++ +I D L VK +E K +V G GA E AL +L+ F +
Sbjct: 339 DHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 74.6 bits (184), Expect = 4e-15
Identities = 68/256 (26%), Positives = 107/256 (41%), Gaps = 38/256 (14%)
Query: 153 AAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKI 212
AA +K ++G+ + + + K G S +S +V G VA + M KI N +I
Sbjct: 30 AASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRI 89
Query: 213 ACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDD 272
L L+ + VE + LD + +E + K +++I+A +VILV +
Sbjct: 90 LLLQGPLEYQR----VENKLLS---LDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSR 142
Query: 273 LCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTS-----LSNMEGE-ESFEASSLGEA 326
+ +EAG V VK L+RI++ TGA ++S S G ESF + E
Sbjct: 143 IAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEE 202
Query: 327 AEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNL 386
+T L+ G +I+LRG + + L VKRV+E
Sbjct: 203 HGRSKT------LMFFEGCPKELGCTILLRGGD-----------LEELKKVKRVVEF--- 242
Query: 387 VAGGGAVEAALSIYLE 402
V AA + LE
Sbjct: 243 -----MVFAAYHLKLE 253
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 59.0 bits (144), Expect = 2e-09
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 5 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQ 60
+A+ VK +LGP G + ++ G +T DG T+ + +E+E P A+++ E+A
Sbjct: 19 KLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQ 113
++ GDGTT+ ++A ++K + V +P + G A + + +++
Sbjct: 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKL 131
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 54.7 bits (132), Expect = 5e-08
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 5 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQ 60
+AN VK +LGP G + +L G +T DG T+ + +E+E A+++ E+A
Sbjct: 22 ILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKT 81
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQ 113
++ GDGTT+ ++A +++ +LV ++P + G LA +++
Sbjct: 82 NDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKI 134
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 50.1 bits (120), Expect = 1e-06
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 3 ASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQ 58
+ +A+ VK +LGP G + ++ G T+TNDG TI + +E+E A+++ E+A
Sbjct: 20 VNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVAS 79
Query: 59 LQDEEVGDGTTSVVIVAAELLK 80
++ GDGTT+ ++A +++
Sbjct: 80 KTNDVAGDGTTTATVLAQAIVR 101
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 50.0 bits (120), Expect = 1e-06
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 4 SAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQL 59
+A+ VK +LGP G + +L G T+T DG T+ + +E+E A+++ E+A
Sbjct: 19 DKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASK 78
Query: 60 QDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD 119
++ GDGTT+ ++A ++K + V +P + G A + + +++ +S
Sbjct: 79 TNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAVVEELKK---LSKP 135
Query: 120 ELGKECLINAAKTS 133
GK+ + A S
Sbjct: 136 VKGKKEIAQVATIS 149
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 49.0 bits (118), Expect = 3e-06
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 5 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQ 60
+A+ VK +LGP G + ++ G T+T DG +I + +E+E P A+++ E+A
Sbjct: 21 KLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKT 80
Query: 61 DEEVGDGTTSVVIVA 75
++ GDGTT+ ++A
Sbjct: 81 NDVAGDGTTTATVLA 95
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 47.3 bits (112), Expect = 1e-05
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+AN VK +LGP G + +L G +T DG T+ + +E+ E+ A+++ E+A
Sbjct: 23 LANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSA 82
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLA 102
+ GDGTT+ ++A +++ + V ++P + G LA
Sbjct: 83 DAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLA 123
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 45.7 bits (109), Expect = 3e-05
Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPA----ARVLVELAQLQD 61
+A+ V +LGP G + ++ + G +T DG T+ + +E A+++ ++A +
Sbjct: 34 LADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTN 93
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDEL 121
++ GDGTT+ I+A + + + V ++P + G LA K + +++Q S
Sbjct: 94 DKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQ---SRPVK 150
Query: 122 GKECLINAAKTS 133
KE ++N A S
Sbjct: 151 TKEDILNVATIS 162
Score = 28.3 bits (64), Expect = 8.8
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 290 KKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGP 345
+K L+ IA TGA+ ++ + + F+ S LG A +V T+ DE +++ G
Sbjct: 296 RKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGG 348
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 44.8 bits (106), Expect = 5e-05
Identities = 30/112 (26%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQLQD 61
+AN VK +LGP G + ++ G +T DG T+ + +E+ E+ A+++ E+A +
Sbjct: 23 LANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTN 82
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQ 113
+ GDGTT+ ++A +++ + V ++P + G +A K I+++
Sbjct: 83 DLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKR 134
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 44.5 bits (105), Expect = 8e-05
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQD 61
+A++V +LGP G + +L G + NDG T+ + +E+E P A+++ + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISG 98
+ GDGTT+ V++A L+ ++V +P + G
Sbjct: 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRG 174
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 40.9 bits (97), Expect = 0.001
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 16/89 (17%)
Query: 5 AIANIVKSSLGP----VGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVEL 56
+A+ VK +LGP V L+K G T+T DG T+ + +E+E P A+++ E+
Sbjct: 21 KLADAVKVTLGPKGRNVVLEK----SFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEV 76
Query: 57 AQLQDEEVGDGTTSVVIVAA----ELLKN 81
A ++ GDGTT+ ++A E LKN
Sbjct: 77 ASKTNDVAGDGTTTATVLAQAIVREGLKN 105
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 31.6 bits (72), Expect = 0.74
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 6 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVEL----AQLQD 61
+A V +LGP G + +L G + NDG TI + +E+E V L A +
Sbjct: 22 LAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTN 81
Query: 62 EEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACK-------------EACK 108
+ GDGTT+ ++A ++K + V +P S+ G A + E +
Sbjct: 82 DVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQ 141
Query: 109 YIQQQLTISV---DELGK 123
I Q +IS +E+G
Sbjct: 142 AITQVASISAGNDEEVGS 159
>gnl|CDD|170092 PRK09781, PRK09781, hypothetical protein; Provisional.
Length = 181
Score = 30.5 bits (68), Expect = 1.1
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 223 KMKLGVEVLVNDPEKLDGIRA--RES-----DITKERINKILATGANVILVS--GGIDDL 273
+KL VE + DP IR RES DI E IN++L GA +I+++ DD
Sbjct: 3 DVKLYVERVGVDPASGADIRIARRESTSWHKDIVAELINQVLRCGAALIIIAVLTACDDR 62
Query: 274 CLKYFVEAGAM 284
+ YF + A+
Sbjct: 63 QVSYFPDYAAI 73
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 246 SDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA 283
+ ++ + LA GA V+ V G DD L+ E
Sbjct: 102 AGKALGKLAQALAYGATVLAVEGNFDD-ALRLVRELAE 138
>gnl|CDD|223058 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 31.1 bits (71), Expect = 1.4
Identities = 27/114 (23%), Positives = 33/114 (28%), Gaps = 31/114 (27%)
Query: 102 ACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITE 161
ACKE C+ ELG +A +S F T+V A A
Sbjct: 756 ACKEFCR-----------ELGVNFTFTSASSSPRQDQPPQPGPLFNTIVF-TASA----- 798
Query: 162 KSGNVTYPIKAIN-LLKAHGKSARESVLV-----QGYALNCTVASQAMKKKITN 209
V + LK G S LV Y L +V Q K
Sbjct: 799 ---PVPSSTPRLTPDLKKPG-----SALVHLSISPEYTLAGSVFEQIFGLKSGT 844
>gnl|CDD|239522 cd03430, GDPMH, GDP-mannose glycosyl hydrolase (AKA GDP-mannose
mannosyl hydrolase (GDPMH)) is a member of the Nudix
hydrolase superfamily. This class of enzymes is unique
from other members of the superfamily in two aspects.
First, it contains a modified Nudix signature sequence.
The slight changes to the conserved sequence motif,
GX5EX7REUXEEXGU, where U = I, L or V), are believed to
contribute to the removal of all magnesium binding sites
but one, retaining only the metal site that coordinates
the pyrophosphate of the substrate. Secondly, it is not
a pyrophosphatase that substitutes at a phosphorus;
instead, it hydrolyzes nucleotide sugars such as
GDP-mannose to GDP and mannose, cleaving the
phosphoglycosyl bond by substituting at a carbon
position. GDP-mannose provides mannosyl components for
cell wall synthesis and is required for the synthesis of
other glycosyl donors (such as GDP-fucose and colitose)
for the cell wall. The importance of GDP-sugar hydrolase
activities is thus closely related to the regulation of
cell wall biosynthesis. Enzymes in this family are
believed to regulate the concentration of GDP-mannose
and GDP-glucose in the bacterial cell wall.
Length = 144
Score = 28.8 bits (65), Expect = 2.7
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
Query: 116 ISVDELGKECLINAAKTSMSSKLIGP-----DDNFFA----TMVVDAAQAIKITE 161
I+ DELG E LI+ A +L+G DDNFF T V +K++
Sbjct: 60 IAKDELGLEFLISDA------ELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSS 108
>gnl|CDD|183649 PRK12649, PRK12649, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 789
Score = 29.8 bits (67), Expect = 3.3
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 252 RINKILA-TGANVILVSG-GIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSL 309
RI+ I + T A ILVSG G+ + L AG +A R + D+K I + S L L
Sbjct: 266 RIHPIFSGTEAWFILVSGTGMITMVL-----AGFLAFR---QTDIKAILAYSTISQLAYL 317
Query: 310 SNMEGEESFEASSLGEAA 327
M G ++ LG AA
Sbjct: 318 MTMYGYTTYHEPGLGVAA 335
>gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.
Length = 758
Score = 28.9 bits (65), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 91 HPTSVISGYRLACKEACKY 109
HPT+ S YR+ C + KY
Sbjct: 661 HPTNSYSDYRVGCDKPGKY 679
>gnl|CDD|151040 pfam10474, DUF2451, Protein of unknown function C-terminus
(DUF2451). This protein is found in eukaryotes but its
function is not known. The C-terminal part of some
members is DUF2450.
Length = 234
Score = 28.4 bits (64), Expect = 5.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 156 AIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACL 215
+++ E S + P + +N+L H LV+G++ + KK T
Sbjct: 105 TMRLDEISASADVPPEILNVLWEHAVHLATETLVEGFS---NI------KKCTAEG---- 151
Query: 216 DFSLQKAKMKLGVEVLVNDPEKLDGIR 242
+A M+L + L+N EKL GI+
Sbjct: 152 -----RALMQLDFQNLLNKLEKLTGIK 173
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 28.5 bits (65), Expect = 7.5
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 240 GIRARESDITKERIN-KI-LATGANV--ILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLK 295
GIR E D+ E+I KI A V +LV G + VEAG ++VRR DL
Sbjct: 566 GIRV-EVDLRNEKIGYKIREAQLQKVPYMLVVGDKE-------VEAGTVSVRRRGGKDLG 617
>gnl|CDD|214935 smart00955, RNB, This domain is the catalytic domain of
ribonuclease II.
Length = 286
Score = 28.0 bits (63), Expect = 8.0
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 77 ELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSS 136
L + E++ + + + + S RL +E +++ I +DE GK I + + +
Sbjct: 99 TLDADGGEILDYEFYRSVIRSKARLTYEEVDAILEK---IVLDEEGKIEDIVPRERNDAH 155
Query: 137 KLI 139
L+
Sbjct: 156 SLV 158
>gnl|CDD|239548 cd03465, URO-D_like, The URO-D _like protein superfamily includes
bacterial and eukaryotic uroporphyrinogen decarboxylases
(URO-D), coenzyme M methyltransferases and other
putative bacterial methyltransferases. Uroporphyrinogen
decarboxylase (URO-D) decarboxylates the four acetate
side chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, an important branching point of
the tetrapyrrole biosynthetic pathway. The
methyltransferases represented here are important for
ability of methanogenic organisms to use other compounds
than carbon dioxide for reduction to methane.
Length = 330
Score = 28.1 bits (63), Expect = 8.2
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 250 KERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATG 302
K+ + I A G VI + G L+ + GA VDL K G
Sbjct: 211 KKVFDAIKALGGPVIHHNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVG 263
>gnl|CDD|222464 pfam13941, MutL, MutL protein. This small family includes,
GlmL/MutL from Clostridium tetanomorphum and Clostridium
cochlearium. GlmL is located between the genes for the
two subunits, epsilon (GlmE) and sigma (GlmS), of the
coenzyme-B12-dependent glutamate mutase (methylaspartate
mutase), the first enzyme in a pathway of glutamate
fermentation. Members shows significant sequence
similarity to the hydantoinase branch of the
hydantoinase/oxoprolinase family.
Length = 457
Score = 28.3 bits (64), Expect = 9.0
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 248 ITKERINKILATGANVILVSGGID 271
+T+ + ++L ++IL++GG D
Sbjct: 112 LTETDLEELLELRPDIILLAGGTD 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.355
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,141,856
Number of extensions: 1984325
Number of successful extensions: 2162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2068
Number of HSP's successfully gapped: 75
Length of query: 407
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 308
Effective length of database: 6,546,556
Effective search space: 2016339248
Effective search space used: 2016339248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)