RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14917
(407 letters)
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 580 bits (1497), Expect = 0.0
Identities = 316/407 (77%), Positives = 362/407 (88%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
MAA++IANIVKSSLGPVGLDKMLVDDIGDVT+TNDGATIL+LLEVEHPAA+VL ELA LQ
Sbjct: 17 MAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQ 76
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+EVGDGTTSVVI+AAELLKNADELVKQKIHPTSVISGYRLACKEA +YI + L I+ DE
Sbjct: 77 DKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDE 136
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
LG++CLINAAKTSMSSK+IG + +FFA +VVDA AIK T+ G YP+ +IN+LKAHG
Sbjct: 137 LGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHG 196
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+S ES+L+ GYALNC V SQ M K+I NAKIACLDFSLQK KMKLGV+V++ DPEKLD
Sbjct: 197 RSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQ 256
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
IR RESDITKERI KILATGANVIL +GGIDD+CLKYFVEAGAMAVRRV K DLKRIAKA
Sbjct: 257 IRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 316
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
+GA+ L++L+N+EGEE+FEAS LG+A EVVQ ++CDDELILI KART+AS+ILRG ND
Sbjct: 317 SGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGAND 376
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
F CDEMERS+HDALCVVKRVLESK++V GGGAVEAALSIYLEN+AT+
Sbjct: 377 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATS 423
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 571 bits (1474), Expect = 0.0
Identities = 267/409 (65%), Positives = 331/409 (80%), Gaps = 2/409 (0%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A A+AN+VKSSLGPVGLDKMLVDDIGD TVTNDGATIL LL+V+HPA ++LVELAQ Q
Sbjct: 31 LATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQ 90
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D E+GDGTTSVVI+A+ELLK A+ELVK KIHPT++I+G+R+A +EA ++I + L+ SVD
Sbjct: 91 DREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDT 150
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
LGKE LIN AKTSMSSK+IG D +FF+ MVVDA A+K G + YP+KA+N+LKAHG
Sbjct: 151 LGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHG 210
Query: 181 KSARESVLVQGYALNCTVASQAMKKKIT--NAKIACLDFSLQKAKMKLGVEVLVNDPEKL 238
KSA ES+LV GYALNCTVASQAM K+I N KIACLD +LQKA+M +GV++ ++DPE+L
Sbjct: 211 KSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQL 270
Query: 239 DGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIA 298
+ IR RE+ I ER+ KI+ GA V+L + GIDDLCLK FVEA M VRR KK DL+RIA
Sbjct: 271 EQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIA 330
Query: 299 KATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGP 358
+ATGA+ ++S+SN+EGEE+FE+S LG EVVQ + DDE ILI G +++SIILRG
Sbjct: 331 RATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGA 390
Query: 359 NDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
ND+ DEMERS+HD+L VVKR LES N+V GGG VEAAL+IYL+NFATT
Sbjct: 391 NDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATT 439
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 564 bits (1456), Expect = 0.0
Identities = 158/407 (38%), Positives = 242/407 (59%), Gaps = 10/407 (2%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA AIA+ V+++LGP G+DKMLVD IGD+ ++NDGATIL+ ++VEHP A+++VE+++ Q
Sbjct: 29 EAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQ 88
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D VGDGTT+ V+++ ELLK A+ L+ Q +HPT + +GYRLA EA K I + I+
Sbjct: 89 DTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE---IAEKS 145
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
L A T++S K G ++F A +VV A A+ + G I + K +G
Sbjct: 146 TDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVA-EVRDGKTIVDTANIKVDKKNG 204
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ + G ++ M + NAKIA +D +L+ K ++ +V ++DP K+
Sbjct: 205 GSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQD 264
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E++ K+ + KI +GANV+L GIDD+ Y + G AVRRVKK D++++AKA
Sbjct: 265 FLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKA 324
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA +T L + S LGEA V + ++ DD + + G K A SI++RG D
Sbjct: 325 TGAKIVTDL------DDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTD 378
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
E+ER+++DA+ VV E + GGGAVEA L++ L +A +
Sbjct: 379 HVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANS 425
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 561 bits (1448), Expect = 0.0
Identities = 130/408 (31%), Positives = 224/408 (54%), Gaps = 8/408 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA IA+I+++ LGP + KML+D +G + +TNDG ILR ++V+HPAA+ ++E+++ Q
Sbjct: 16 NAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQ 75
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
DEEVGDGTTSV+I+A E+L A+ ++Q++HPT VIS YR A + +++ ++I VD
Sbjct: 76 DEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKK-ISIPVDT 134
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
++ ++N +S+++K+I + + +DA + ++ E K + K G
Sbjct: 135 SNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+S +++G +N V M++ I N +I LD SL+ K + ++ + E
Sbjct: 195 GIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTR 254
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
I E + ++ I+ +V++ GI DL Y + A A+RRV+K D RIA+A
Sbjct: 255 ILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARA 314
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQ-TQVCDDELILINGPKARTAASIILRGPN 359
GA ++ + E+ +G A +++ ++ D+ I K A +I+LRG +
Sbjct: 315 CGARIVSRPEELREED------VGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGAS 368
Query: 360 DFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
E+ER++ DA+ V + VL LV GGGA E A++ L +
Sbjct: 369 KEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKA 416
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 560 bits (1445), Expect = 0.0
Identities = 152/407 (37%), Positives = 247/407 (60%), Gaps = 8/407 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
A A+ +KS+ GP G+DKMLVD +GD+T+TNDGATIL ++++HPAA++LV++A+ Q
Sbjct: 37 AAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQ 96
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
DEE DGT + VI + EL+K A++L+ + +HPT +ISGY+ A + A + I Q+L +V
Sbjct: 97 DEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTI-QELAQTVSI 155
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+ L A TS+SSK + + A +VV A + + + I ++K G
Sbjct: 156 NDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVA-ELRGDKWYVDLDNIQIVKKAG 214
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ LV G ++ V M K++ NAKIA +D SL+ K +L E+ +NDP ++
Sbjct: 215 GSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQK 274
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
E ++ KE+++KILATGANVI+ GID++ Y + G +AVRR KK DL+++A+A
Sbjct: 275 FLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARA 334
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TG ++++ + ++ LG A+ + + +V +D+++ + G K + SI++RG +
Sbjct: 335 TGGRVVSNIDEISEQD------LGYASLIEERKVGEDKMVFVEGAKNPKSISILIRGGLE 388
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
DE ER++ DAL V V++ +AGGGAVE ++ L +A
Sbjct: 389 RLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQ 435
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 559 bits (1442), Expect = 0.0
Identities = 154/407 (37%), Positives = 239/407 (58%), Gaps = 8/407 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA AI+N V+SSLGP G+DKMLVD +GD+ +TNDG TIL+ ++VEHPAA+++VE+++ Q
Sbjct: 28 EAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQ 87
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D VGDGTT+ VI+A LL+ A L+ Q +HPT + GYR+A +EA + I +++ +
Sbjct: 88 DSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVI-DEISTKIGA 146
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
K L+ A+TS++SK + A + +A +++ + G I ++K G
Sbjct: 147 DEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVA-ELRDGKYYVDFDNIQVVKKQG 205
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+ ++ L+ G ++ M + +AKIA LD L+ K + + + DP +
Sbjct: 206 GAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQK 265
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
A+E ++ +E ++KI + GANV++ GIDD+ Y AG AVRRVKK D+ ++AKA
Sbjct: 266 FLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKA 325
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGAS ++++ + +S LG A V Q +V +D + + G K A SI++RG +
Sbjct: 326 TGASIVSTI------DEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETE 379
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
DEMERSI D+L VV LE AGGGA A ++ L ++A
Sbjct: 380 HVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQK 426
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 553 bits (1427), Expect = 0.0
Identities = 154/407 (37%), Positives = 248/407 (60%), Gaps = 8/407 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA IA V+++LGP G+DKMLVD +GD+ VTND ATIL ++++HPAA+++VE+A+ Q
Sbjct: 30 LAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQ 89
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+E GDGTT+ V++A ELL+ A+EL+ Q IHP+ + GY LA ++A + + ++ I VD
Sbjct: 90 DKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEIL-DEIAIRVDP 148
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E L+ A TS++ K A + V+A + + +K G + I K G
Sbjct: 149 DDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVA-EKKDGKYVVDLDNIKFEKKAG 207
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+ ES LV+G ++ V M K++ NAKIA ++ +L+ K + ++ + P++L
Sbjct: 208 EGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMS 267
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ ++ I TGANV+ V GIDDL Y + G MAVRRVKK D++++AKA
Sbjct: 268 FLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKA 327
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA +T++ ++ E+ LG A V + ++ + +I + G K A +I++RG +
Sbjct: 328 TGAKIVTNVKDLTPED------LGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTE 381
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
DE+ER++ DA+ VVK V+E ++ GGA E L+I L+ +A
Sbjct: 382 HVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQ 428
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 548 bits (1415), Expect = 0.0
Identities = 151/407 (37%), Positives = 244/407 (59%), Gaps = 11/407 (2%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A IA V+S+LGP G+DKMLVDD+GDV VTNDG TILR + VEHPAA++L+E+A+ Q
Sbjct: 26 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 85
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGTT+ V+VA ELL+ A+EL+ Q +HPT V+ GY+ A ++A + + + + V
Sbjct: 86 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL-KTIACEVGA 144
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
KE L A TS++ K A ++V+A A+ E I + K G
Sbjct: 145 QDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK----VDKDLIKIEKKSG 200
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
S ++ L++G ++ S M KK+T+AKIA L+ +++ + + E+ + DP KL
Sbjct: 201 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 260
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
+E + K+ + +I A+GANV+ GIDDL Y + G +A RRVKK D++++AKA
Sbjct: 261 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 320
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
TGA+ + +++ + ++ LG+A V + ++ D +I + K A ++++RG +
Sbjct: 321 TGANVIAAIAALSAQD------LGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 374
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
+E+ R++ DA+ VV +E +V+GGG+ E LS+ L +A
Sbjct: 375 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEG 421
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 542 bits (1399), Expect = 0.0
Identities = 136/410 (33%), Positives = 225/410 (54%), Gaps = 12/410 (2%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
MAA A+AN +K+SLGP GLDKM+VD GDVTVTNDGATIL +++V+H A+++VEL++ Q
Sbjct: 17 MAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQ 76
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ-QLTISVD 119
D+E+GDGTT VV++A LL+ A++L+ + IHP + GY A + A +++ + ++ VD
Sbjct: 77 DDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVD 136
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
E LI AKT++ SK++ A + V+A + ++ + I +
Sbjct: 137 MKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRD---VDFELIKVEGKV 193
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
G ++ L++G ++ + M K++ +AKIA L + K K ++ V E
Sbjct: 194 GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFK 253
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAK 299
++ E + +E I +I TGAN+ + G DD ++ AVR V +++ IA
Sbjct: 254 ALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAI 313
Query: 300 ATGASFLTSLSNMEGEESFEASSLGEAA--EVVQTQVCDDELILINGPKARTAASIILRG 357
ATG + S + E+ LG A + + D++++I K A +I +RG
Sbjct: 314 ATGGRIVPRFSELTAEK------LGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRG 367
Query: 358 PNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
N +E +RS+HDALCV++ ++ +V GGGA E + ++ + A
Sbjct: 368 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADK 417
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 540 bits (1395), Expect = 0.0
Identities = 141/413 (34%), Positives = 218/413 (52%), Gaps = 19/413 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
A A+ +K +LGP+G D ++V T++NDGATIL+LL+V HPAA+ LV++++ Q
Sbjct: 31 NACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQ 90
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISV-- 118
D EVGDGTTSV I+A EL+K A +++ I ++ GYR A A + I +L + +
Sbjct: 91 DAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKI-NELAVDITS 149
Query: 119 -DELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLK 177
G+E L A+T+MSSKLI + +FF M VDA ++ + K I + K
Sbjct: 150 EKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDRND------LDDKLIGIKK 203
Query: 178 AHGKSARESVLVQGYALNCTVASQA---MKKKITNAKIACLDFSLQKAKMKLGVEVLVND 234
G + ES+ + G A T + KK N KI L+ L+ K EV V
Sbjct: 204 IPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEH 263
Query: 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDL 294
E I E + E++ ++ TGAN++L I DL ++F + RV D+
Sbjct: 264 VEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDM 323
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASII 354
R+ +A G S ++ S+++ E LG A + Q+ + L G +++
Sbjct: 324 NRVIQAVGGSIQSTTSDIKPEH------LGTCALFEEMQIGSERYNLFQGCPQAKTCTLL 377
Query: 355 LRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
LRG + E+ERS+HDA+ +VKR L++K +VAGGGA E +S L +++ T
Sbjct: 378 LRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKT 430
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 538 bits (1388), Expect = 0.0
Identities = 127/416 (30%), Positives = 216/416 (51%), Gaps = 19/416 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA ++A+ +++SLGP G+DKM+ G++ ++NDG TIL+ + + HP AR+LVE++ Q
Sbjct: 26 IAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQ 85
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D E GDGTTSVVI+ LL A+ L+ + IHPT + ++ A K + + ++ V
Sbjct: 86 DSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDIL-LEMCHKVSL 144
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E L+ AA TS+SSK++ +F A + VD+ I + + I L+K G
Sbjct: 145 SDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKIS---DENSKNVDLNDIRLVKKVG 201
Query: 181 KSARESVLVQGYALNCT-VASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
+ ++ ++ G L T + S + AKI + F + K ++VND ++D
Sbjct: 202 GTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMD 261
Query: 240 GIRARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVDL 294
I E KI NV+L+ I +DL L + + M V+ +++ ++
Sbjct: 262 KILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEI 321
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILING---PKARTAA 351
+ ++K G + + E F L A V + +++ + G AR
Sbjct: 322 EFLSKGLGCKPIADI------ELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTV 375
Query: 352 SIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
S+++RG N+ DE ERS+HDALCV++ +++ + L+AGGGA E +S L A +
Sbjct: 376 SVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARS 431
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 535 bits (1382), Expect = 0.0
Identities = 148/413 (35%), Positives = 221/413 (53%), Gaps = 19/413 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
A IA V+++LGP G+DK++VD G T++NDGATIL+LL+V HPAA+ LV++A+ Q
Sbjct: 18 SACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQ 77
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ---QLTIS 117
D EVGDGTTSV ++AAE LK V++ +HP +I +R A + A I++ +
Sbjct: 78 DAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKE 137
Query: 118 VDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLK 177
++ L A T++SSKLI FFA MVVDA + +K I + K
Sbjct: 138 DKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-------DLLQLKMIGIKK 190
Query: 178 AHGKSARESVLVQGYALNCTVASQAMK---KKITNAKIACLDFSLQKAKMKLGVEVLVND 234
G + ES LV G A T + + KK N IA L+ L+ K E+ V+
Sbjct: 191 VQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHT 250
Query: 235 PEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDL 294
E I E +I +++ KI +GA V+L I D+ +YF + RV + DL
Sbjct: 251 VEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 310
Query: 295 KRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASII 354
KR A G S TS++ + + LG +TQ+ + G +II
Sbjct: 311 KRTMMACGGSIQTSVNALSSDV------LGRCQVFEETQIGGERYNFFTGCPKAKTCTII 364
Query: 355 LRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
LRG + + +E ERS+HDA+ +V+R +++ ++VAGGGA+E LS YL +++ T
Sbjct: 365 LRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRT 417
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 536 bits (1384), Expect = 0.0
Identities = 130/418 (31%), Positives = 227/418 (54%), Gaps = 20/418 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA ++A+I+K+SLGP GLDK+L+ G++T+TNDGATIL +E+++ A++LV+L++ Q
Sbjct: 52 LAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQ 111
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ---QLTIS 117
D+E+GDGTT VV++A+ LL A EL+++ IHP + +G+ A K A +++ ++ S
Sbjct: 112 DDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISAS 171
Query: 118 VDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLK 177
DEL ++ L+ AAKTS+ SK++ D + FA M V+A + ++ I +
Sbjct: 172 NDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKD---VDFDLIKMQG 228
Query: 178 AHGKSARESVLVQGYALNCTVASQAMKKKIT------NAKIACLDFSLQKAKMKLGVEVL 231
G S +S L+ G L+ + M K + K+A L + K K ++
Sbjct: 229 RVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLD 288
Query: 232 VNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKK 291
++ E+ ++ E D KE I+ + GA+V++ G DD ++ AVR V
Sbjct: 289 ISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGG 348
Query: 292 VDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQV--CDDELILINGPKART 349
+L+ IA +T + ++ ++ LG + + + + D +++I K
Sbjct: 349 QELEHIAISTNGRIVPRFQDLSKDK------LGTCSRIYEQEFGTTKDRMLIIEQSKETK 402
Query: 350 AASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
+ +RG N DE ER++HD+LCVV+ +++ +V GGGA E +S+ + A
Sbjct: 403 TVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADK 460
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 532 bits (1372), Expect = 0.0
Identities = 138/414 (33%), Positives = 235/414 (56%), Gaps = 17/414 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA A+A+ +++SLGP G+DKM+ D GDVT+TNDGATIL+ ++V HPAAR+LVEL++ Q
Sbjct: 18 SAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQ 77
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D E GDGTTSVVI+A LL + +L+++ IHPT + ++ A ++ + + ++ V+
Sbjct: 78 DIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEIL-TDMSRPVEL 136
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
+E L+N+A TS++SK++ + + M VDA + + + + ++ I ++K G
Sbjct: 137 SDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMK--VIDPATATSVDLRDIKIVKKLG 194
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
+ + LV+G L VA+ + ++ AKI + F L K + +++V+D ++D
Sbjct: 195 GTIDDCELVEGLVLTQKVANSGI-TRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDR 253
Query: 241 IRARESDITKERINKILATGANVILVSGGI-----DDLCLKYFVEAGAMAVRRVKKVDLK 295
+ E + +I TG NV+L+ I DL L + + M V+ +++ D++
Sbjct: 254 VLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIE 313
Query: 296 RIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVC-DDELILINGPKART-AASI 353
I K G + + + F A LG A + + +LI I G + +I
Sbjct: 314 FICKTIGTKPVAHV------DQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTI 367
Query: 354 ILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
++RG N +E ERSIHDALCV++ +++ + L+AGGGA E L++ L ++ T
Sbjct: 368 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRT 421
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 529 bits (1365), Expect = 0.0
Identities = 128/386 (33%), Positives = 223/386 (57%), Gaps = 7/386 (1%)
Query: 22 MLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKN 81
MLVD +GD+ +TNDGATIL+ ++++HPAA+++VE+++ QD EVGDGTT+ +++ ELL
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 82 ADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGP 141
A+EL+ + +H T + GYR A ++ + ++ +TI++ + LI A T+++ K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILET-ITIAISPDDEAALIKIAGTAITGKGAEA 119
Query: 142 DDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQ 201
+ + V A ++I E+ G ++ I + K G S +S L+ G ++ +
Sbjct: 120 YKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHP 179
Query: 202 AMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGA 261
M +K+ NAKI L ++ K ++ E+ + P ++ +E + +E K++A+GA
Sbjct: 180 NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGA 239
Query: 262 NVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEAS 321
NV+ GIDD+ Y +AG AVRRVKK DLKR++K TGA+ + L + E+
Sbjct: 240 NVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTED----- 294
Query: 322 SLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVL 381
+G A V + +V ++ + G + A +++L G + D ++ +++DAL VV V+
Sbjct: 295 -VGTAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVI 353
Query: 382 ESKNLVAGGGAVEAALSIYLENFATT 407
E +V GGG+ E LS+ L +A+T
Sbjct: 354 EDGKVVVGGGSSEVELSLRLSEYAST 379
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 527 bits (1359), Expect = 0.0
Identities = 140/412 (33%), Positives = 231/412 (56%), Gaps = 19/412 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGD--VTVTNDGATILRLLEVEHPAARVLVELAQ 58
+ A AI ++VKS+LGP G+DK+L+ D + VTNDGATIL+ + V++PAA+VLV++++
Sbjct: 17 IGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSR 76
Query: 59 LQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLT--I 116
+QD+EVGDGTTSV ++AAELL+ A+ L+ +KIHP ++I+G+R A K A + +
Sbjct: 77 VQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHG 136
Query: 117 SVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLL 176
S + ++ L+N A T++SSKL+ + F + V+A +K + ++AI+++
Sbjct: 137 SDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLK-------GSGNLEAIHVI 189
Query: 177 KAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVLVNDP 235
K G S +S L +G+ L+ + K+I NAKI + + K+K+ G V V+
Sbjct: 190 KKLGGSLADSYLDEGFLLDKKIGVN-QPKRIENAKILIANTGMDTDKIKIFGSRVRVDST 248
Query: 236 EKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLK 295
K+ I E + KE++ +IL G N + I + + F AG MA+ V ++
Sbjct: 249 AKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVE 308
Query: 296 RIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIIL 355
R+A TG ++ + E LG + + + +D+LI +G A +I+L
Sbjct: 309 RLALVTGGEIASTF------DHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVL 362
Query: 356 RGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
RG DE ERS+HDALCV+ + ++ V GGG E ++ + A+
Sbjct: 363 RGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASR 414
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 525 bits (1356), Expect = 0.0
Identities = 134/412 (32%), Positives = 221/412 (53%), Gaps = 19/412 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDV-TVTNDGATILRLLEVEHPAARVLVELAQL 59
+ A A+ ++VKS+LGP G+DK+L + VTNDGATIL+ + +++PAA+VLV ++++
Sbjct: 24 VGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKV 83
Query: 60 QDEEVGDGTTSVVIVAAELLKNADELVKQ-KIHPTSVISGYRLACKEACKYIQQQLT--I 116
QD+EVGDGTTSV +++AELL+ A++L+ Q KIHP ++I GYRLA A + +
Sbjct: 84 QDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNS 143
Query: 117 SVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLL 176
+ +E LI+ AKT++SSK++ D + FA + +A +K + ++ I ++
Sbjct: 144 HDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLK-------GSTNLEHIQII 196
Query: 177 KAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKL-GVEVLVNDP 235
K G +S L +G+ L + K+I NAKI + +L K+K+ G + V+
Sbjct: 197 KILGGKLSDSFLDEGFILAKKFGNN-QPKRIENAKILIANTTLDTDKVKIFGTKFKVDST 255
Query: 236 EKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLK 295
KL + E + K +I KI G N + I D + F + G ++ ++
Sbjct: 256 AKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVE 315
Query: 296 RIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIIL 355
R+A TG +++ + LGE + + + + + +G KA A +I+L
Sbjct: 316 RLALVTGGEVVSTF------DEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVL 369
Query: 356 RGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
RG D DE ERS+HDAL V+ + + V GGG E +S ++ A
Sbjct: 370 RGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQN 421
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 524 bits (1353), Expect = 0.0
Identities = 99/418 (23%), Positives = 202/418 (48%), Gaps = 20/418 (4%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+A + ++++++LGP G KMLVD G++ +T DG +L ++++ P A ++ A Q
Sbjct: 24 TSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQ 83
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQ-QLTISVD 119
DE GDGTT+VV + ELL+ A +++ +HP + G+ +A KE+ K++ + +++ +
Sbjct: 84 DEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNL 143
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
+E L+ A++S+ +K+ +V DA ++ + + + +++
Sbjct: 144 SNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQAD---NLDLHMVEIMQMQ 200
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
S +++ ++G L+ M ++ NA + L+ SL+ K ++ + ++ D
Sbjct: 201 HLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRD 260
Query: 240 GIRARESDITKERINKIL----------ATGANVILVSGGIDDLCLKYFVEAGAMAVRRV 289
+ A E ++ KI+ VI+ GID + L F + +A+RR
Sbjct: 261 KLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRA 320
Query: 290 KKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART 349
K+ +++R+ TG S+ E LG + V Q + +++ +
Sbjct: 321 KRRNMERLQLVTGGEAQNSV------EDLSPQILGFSGLVYQETIGEEKFTYVTENTDPK 374
Query: 350 AASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
+ +I+++G + + + ++ D L V VL+ KN++ G GA ALS YL +
Sbjct: 375 SCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMN 432
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 520 bits (1343), Expect = 0.0
Identities = 122/409 (29%), Positives = 205/409 (50%), Gaps = 15/409 (3%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
A +A +++ GP G++KM+++ + + VTND ATILR LEV+HPAA+++V + +Q
Sbjct: 18 QACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQ 77
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
++EVGDGT V++ A LL+ A+EL++ + + VI GY +ACK+A + + + S
Sbjct: 78 EQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKN 137
Query: 121 LG-KECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
L + + + TS+ SK G + F A ++ A +I SG+ + I + K
Sbjct: 138 LRDVDEVSSLLHTSVMSKQYGNEV-FLAKLIAQACVSIF--PDSGHF--NVDNIRVCKIL 192
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
G S ++ G + +AKIA + VL+ E+L
Sbjct: 193 GSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELM 250
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAK 299
E ++ ++ I TGANV++ G + D+ L Y + M VR K DL+R+ K
Sbjct: 251 NFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCK 310
Query: 300 ATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART-AASIILRGP 358
GA+ L L+ EE +G V ++V D ++++ K ++I+LRG
Sbjct: 311 TVGATALPRLNPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGS 364
Query: 359 NDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
D D++ER++ D + K + K LV GGGA E L+ + ++ T
Sbjct: 365 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGET 413
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 519 bits (1339), Expect = 0.0
Identities = 110/417 (26%), Positives = 213/417 (51%), Gaps = 23/417 (5%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA + ++++++LGP G KMLV GD+ +T DG +L ++++HP A ++ ++A Q
Sbjct: 17 SAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQ 76
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD- 119
D+ GDGTTS V++ ELLK AD + + +HP + G+ A ++A ++++Q + V
Sbjct: 77 DDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQ---VKVSK 133
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
E+ +E LI+ A+TS+ +K+ + VVD+ AIK ++ + + +++
Sbjct: 134 EMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDE----PIDLFMVEIMEMK 189
Query: 180 GKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
KS ++ L++G L+ MKK++ +A I + SL+ K ++ E+ +
Sbjct: 190 HKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEERE 249
Query: 240 GIRARESDITKERINKILATGAN---------VILVSGGIDDLCLKYFVEAGAMAVRRVK 290
+ E ++R+ KI+ V++ GID L + G +A+RR K
Sbjct: 250 KLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAK 309
Query: 291 KVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTA 350
+ +++R+ A G L SL ++ + L A V + + +++ I +
Sbjct: 310 RRNMERLTLACGGIALNSLDDLNPDC------LLGHAGVYEYTLGEEKFTFIEKCNNPRS 363
Query: 351 ASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
+++++GPN +++ +I D L VK ++ +V G GAVE A++ L + +
Sbjct: 364 VTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPS 420
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 518 bits (1336), Expect = 0.0
Identities = 104/415 (25%), Positives = 190/415 (45%), Gaps = 15/415 (3%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
A + + +S+GP G +K++V+ +G + +TND AT+LR L++ HPA +VLV + Q
Sbjct: 33 AAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQ 92
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLT-ISVD 119
++GDGT V+I+A ELL +++L+ + +I GY +A K K + + + D
Sbjct: 93 KIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITD 152
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKIT--EKSGNVTYPIKAINLLK 177
+ K L+ K +SSK G +D + +V +A + + + + +I ++K
Sbjct: 153 KNDKNELLKMIKPVISSKKYGSED-ILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVK 211
Query: 178 AHGKSARESVLVQGYALNCTVASQA-MKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPE 236
G S S +++G N + K+A L A + VL+++ +
Sbjct: 212 IMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQ 271
Query: 237 KLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKR 296
++ E + +I G I+ G+ +L L Y G + ++ K +L+R
Sbjct: 272 EMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRR 331
Query: 297 IAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKART--AASII 354
+ + GA+ L L EE LG V ++ D + + + ++II
Sbjct: 332 LCRVCGATPLPRLGAPTPEE------LGLVETVKTMEIGGDRVTVFKQEQGEISRTSTII 385
Query: 355 LRGPNDFYCDEMERSIHDALCVVKRVLESKN--LVAGGGAVEAALSIYLENFATT 407
LRG D++ER+I D + VK +++ L+ G GA E L + +
Sbjct: 386 LRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGER 440
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 464 bits (1196), Expect = e-161
Identities = 121/465 (26%), Positives = 218/465 (46%), Gaps = 59/465 (12%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA A+A+++++ LGP + KML+D +G + +TNDG ILR ++V HPAA+ ++EL++ Q
Sbjct: 26 TAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQ 85
Query: 61 DEEVGDGTTSVVIVAAELLKN-ADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVD 119
DEEVGDGTT+V+I+A E+L A L+++ IHP +I + A +A + I+Q ++ VD
Sbjct: 86 DEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQ-VSKPVD 144
Query: 120 ELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKS---GNVTYPI---KAI 173
+ + S+ +K + + +DA + ++ G + I + +
Sbjct: 145 VENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYV 204
Query: 174 NLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVN 233
+ K G +S +++G LN V M + I N ++ LD L+ K + + +
Sbjct: 205 RVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIE 264
Query: 234 DPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVD 293
E + I E + + +ILA +++ G+ DL Y ++ G +RRVKK D
Sbjct: 265 KEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSD 324
Query: 294 LKRIAKATGASFLTSLSNMEGE------ESFEASSLGE---------------------- 325
RIA+ TGA+ + + +++ F+ +G+
Sbjct: 325 NNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQ 384
Query: 326 AAEVVQTQVCDDELILINGP-----------------------KARTAASIILRGPNDFY 362
+ + I ++ + A +I+LRG +
Sbjct: 385 FEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDI 444
Query: 363 CDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
+E++R++ DA+ V + V+ S +L GGGA E A+S+ L A
Sbjct: 445 LNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQ 489
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 205 bits (524), Expect = 2e-65
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 7/180 (3%)
Query: 184 RESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRA 243
+S +++G +N V M++ I N +I LD SL+ K + ++ + E I
Sbjct: 2 EDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQ 61
Query: 244 RESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGA 303
E + + I+ +V++ GI DL Y + A A+RRV+K D RIA+A GA
Sbjct: 62 MEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGA 121
Query: 304 SFLTSLSNMEGEESFEASSLGEAAEVV-QTQVCDDELILINGPKARTAASIILRGPNDFY 362
++ + ++ +G A ++ ++ D+ I K A +I+LRG + +
Sbjct: 122 RIVSRPEELREDD------VGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASHHH 175
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 189 bits (483), Expect = 2e-59
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 6/158 (3%)
Query: 189 VQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDI 248
+ G ++ M + NAKIA +D +L+ K ++ +V ++DP K+ +E++
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 249 TKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTS 308
K+ + KI +GANV+L GIDD+ Y + G AVRRVKK D++++AKATGA +T
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 309 LSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPK 346
L ++ S LGEA V + ++ DD + + G K
Sbjct: 121 LDDL------TPSVLGEAETVEERKIGDDRMTFVMGCK 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 2e-09
Identities = 55/319 (17%), Positives = 96/319 (30%), Gaps = 110/319 (34%)
Query: 57 AQLQDEEVGDG----TTSVVIVAAELLKNAD------------ELVKQKIHPTSVI---S 97
+Q E G G TS A ++ AD ++V P ++
Sbjct: 1626 SQ----EQGMGMDLYKTSKA--AQDVWNRADNHFKDTYGFSILDIVINN--PVNLTIHFG 1677
Query: 98 GYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLI--GPDDNFFATMVVDAAQ 155
G + + Y VD K I S+ AT Q
Sbjct: 1678 GEK-GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---TQ 1733
Query: 156 -AIKITEKSGNVTYPIKAINLLKAHGKSARESV-----LVQG-Y-ALNCTVA-----SQA 202
A+ + EK+ A LK+ G ++ L G Y AL ++A
Sbjct: 1734 PALTLMEKA--------AFEDLKSKGLIPADATFAGHSL--GEYAAL-ASLADVMSIESL 1782
Query: 203 MK------KKITNA----KIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKER 252
++ + A ++ ++ + + G E L + ER
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGM--IAINPGRVAASFSQEALQYV--------VER 1832
Query: 253 INKILATG-----AN------VILVSG---GIDDLC--LKYFVEAGAMAVRRVKKVDLKR 296
+ K TG N + +G +D + L + +++K+D+
Sbjct: 1833 VGK--RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI---------KLQKIDIIE 1881
Query: 297 IAKATGASFLTSLSNMEGE 315
+ K S SL +EG
Sbjct: 1882 LQK----SL--SLEEVEGH 1894
Score = 52.0 bits (124), Expect = 3e-07
Identities = 66/382 (17%), Positives = 114/382 (29%), Gaps = 129/382 (33%)
Query: 39 ILRLLEVEHPAAR------VLVELAQ--LQDEEVGDGTTSVVIVAAELLKNAD-ELVKQK 89
+ L+E L E L+ ++ +AA+LL+ D LVK K
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-------LAAKLLQENDTTLVKTK 120
Query: 90 IHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLI------GPDD 143
+I Y A D+ L A +++L+ G D
Sbjct: 121 ----ELIKNYITAR--------IMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTD 167
Query: 144 NFF----------ATMVVD----AAQAIK---ITEKSGNVTYPIKAINLLKA-HGKSARE 185
++F +V D +A+ + T + + +N+L+ S
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNILEWLENPSNTP 226
Query: 186 SVLVQGYALNCTVA------SQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD 239
+ Y L+ ++ Q + + + LG P +L
Sbjct: 227 D---KDYLLSIPISCPLIGVIQ-----LAHYVVTA---------KLLGF-----TPGEL- 263
Query: 240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVR-------RVKKV 292
R+ T ++ A I + + F + A+ R +
Sbjct: 264 --RSYLKGATG-HSQGLVT--AVAIAETDSWES-----FFVSVRKAITVLFFIGVRCYE- 312
Query: 293 DLKRIAKATGASFLT------SLSNMEGEESFEASSLGEAAEVVQTQV--CDDEL----- 339
A + L SL N EG S S E VQ V + L
Sbjct: 313 -------AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 340 --I-LINGPKARTAASIILRGP 358
I L+NG K ++++ GP
Sbjct: 366 VEISLVNGAK-----NLVVSGP 382
Score = 44.3 bits (104), Expect = 7e-05
Identities = 56/279 (20%), Positives = 79/279 (28%), Gaps = 120/279 (43%)
Query: 190 QGYALNCTVASQA--MKKKI-TNAKIA-------------CLDFSLQKAKMKLGVEVLVN 233
QG SQ M + +K A FS+ ++++N
Sbjct: 1624 QG--------SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSIL--------DIVIN 1667
Query: 234 DPEKL----DG-----IRARESDITKERINKILATGANVILVSGGIDDLCLKY-FV-EAG 282
+P L G IR S + E I + I++ Y F E G
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFRSEKG 1724
Query: 283 AMAVRRVKKVDLKRIAKATG----ASFLTSLSNME-----GEESFEAS----SLGE---- 325
+ AT A L + E G +A+ SLGE
Sbjct: 1725 LL--------------SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 326 -----------AAEVV-------QTQVCDDELILINGPKARTAASIILRGPNDFYCDEME 367
EVV Q V DEL R+ +I P +
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDEL-------GRSNYGMIAINPG-----RVA 1818
Query: 368 RSI-HDAL-CVVKRVLESKNLVAGGGAVEAALSIYLENF 404
S +AL VV+RV + G VE N+
Sbjct: 1819 ASFSQEALQYVVERVGK-----RTGWLVEIV------NY 1846
Score = 37.3 bits (86), Expect = 0.010
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 37/129 (28%)
Query: 272 DLCLKY--FVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEE--SFEASSLGEAA 327
+L K+ +V + V K ++ F +EG + + A L E
Sbjct: 59 ELVGKFLGYV---SSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQEND 113
Query: 328 EVVQTQVCDDELI--------LINGPKARTAASIILR----------------GPNDFYC 363
T V ELI + P + + S + R G D Y
Sbjct: 114 ---TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 364 DEMERSIHD 372
+E+ R ++
Sbjct: 171 EEL-RDLYQ 178
Score = 35.0 bits (80), Expect = 0.056
Identities = 27/109 (24%), Positives = 33/109 (30%), Gaps = 42/109 (38%)
Query: 9 IVKSSLG-PV-----GLD---------KMLVDDIGDVTV-----TNDGATILRLLEVEHP 48
+ PV G D + +VD I + V T AT H
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT--------H- 500
Query: 49 AARVLV-------ELAQLQDEEVGDGTTSVVIVAAELLKNADELV--KQ 88
+L L L DGT VIVA L N D+ KQ
Sbjct: 501 ---ILDFGPGGASGLGVLTHRNK-DGTGVRVIVAGTLDINPDDDYGFKQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 9e-08
Identities = 50/433 (11%), Positives = 113/433 (26%), Gaps = 139/433 (32%)
Query: 2 AASAIANIVKSSLGPVGLDKMLV-DDIGD--------------VTVTNDGATILRLLEVE 46
+ + ++KS L LV ++ + +T T + L
Sbjct: 230 IQAELRRLLKSKPYENCL---LVLLNVQNAKAWNAFNLSCKILLT-TRF-KQVTDFLSAA 284
Query: 47 HPAARVLVELAQ-LQDEEVGDGTTSVVIVAAELLKNADELVKQ--KIHPTSVISGYRLAC 103
L + L +E ++ L +L ++ +P +S +
Sbjct: 285 TTTHISLDHHSMTLTPDE------VKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESI 337
Query: 104 KEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDD--NFFATMVV---DAAQAIK 158
++ ++ D+L +I S ++ P + F + V A
Sbjct: 338 RDGLATWDNWKHVNCDKLTT--II-----ESSLNVLEPAEYRKMFDRLSVFPPSA----H 386
Query: 159 ITEKS-----GNVTY--PIKAIN------LLKAHGKSARESVLVQGYALNCTVASQAMKK 205
I +V + +N L++ K + S+ ++ + + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PSIYLELKVKLENE 442
Query: 206 KITNAKIACLD-FSLQKAKMKLGVEVLVND--PEKLDG------------IRARESDITK 250
+ I +D +++ K +D P LD I E
Sbjct: 443 YALHRSI--VDHYNIPKTFDS-------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 251 ERI--------NKILATGANVILVSGGIDDLC-----LKYFVEAGAMAVRRVKKVDLKRI 297
+ KI ++ L Y + R V +
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILD- 550
Query: 298 AKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRG 357
FL + E + ++++ I L
Sbjct: 551 -------FLPKIE--------ENLICSKYTDLLR---------------------IALMA 574
Query: 358 PNDFYCDEMERSI 370
++ +E + +
Sbjct: 575 EDEAIFEEAHKQV 587
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 42.5 bits (101), Expect = 2e-04
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 5 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQ 60
A+A+ VK +LGP G + +L G T+TNDG +I + +E+E P A ++ E+A+
Sbjct: 21 ALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT 80
Query: 61 DEEVGDGTTSVVIVA----AELLKN 81
D+ GDGTT+ ++A E L+N
Sbjct: 81 DDVAGDGTTTATVLAQALVREGLRN 105
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 42.6 bits (101), Expect = 2e-04
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 5 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQ 60
+A+ VK +LGP G + ++ G +T DG ++ + +E+ A+++ E+A
Sbjct: 22 ILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRT 81
Query: 61 DEEVGDGTTSVVIVA----AELLKN 81
++E GDGTT+ ++A E LK
Sbjct: 82 NDEAGDGTTTATVLAQAIVREGLKA 106
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 42.2 bits (100), Expect = 2e-04
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 5 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQ 60
+A+ VK +LGP G + +L G T+T DG ++ R +E+E A+++ E+A
Sbjct: 21 VLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKA 80
Query: 61 DEEVGDGTTSVVIVA----AELLKN 81
++ GDGTT+ ++A E LK
Sbjct: 81 NDAAGDGTTTATVLAQAIITEGLKA 105
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 41.8 bits (99), Expect = 4e-04
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 5 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELAQLQ 60
A+AN VK +LGP G + +L G T+T DG T+ + +E+E A++L E+A
Sbjct: 21 AVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKT 80
Query: 61 DEEVGDGTTSVVIVA----AELLKN 81
++ GDGTT+ ++A E LKN
Sbjct: 81 NDVAGDGTTTATVLAQAIVREGLKN 105
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 30.1 bits (68), Expect = 1.0
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 200 SQAMKKKITNAKIACLDFS---LQKAKMKLG----VEVLVNDPEKLD 239
S + +K A +D S L+ AK + V+ + D K D
Sbjct: 59 SAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.2
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 24/51 (47%)
Query: 111 QQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDA-AQAIKIT 160
++Q ++ +L + S+ KL D A A AIK T
Sbjct: 18 EKQ---ALKKL---------QASL--KLYADD---------SAPALAIKAT 45
Score = 28.8 bits (63), Expect = 2.3
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 17/44 (38%)
Query: 155 QAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTV 198
QA+K + S LK + A +S A+ T+
Sbjct: 20 QALKKLQAS------------LKLY---ADDS--APALAIKATM 46
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 29.2 bits (66), Expect = 2.6
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 240 GIRAR----ESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA 283
GI + I ++ + + GA +I + G DD CL+ + A
Sbjct: 108 GITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDD-CLELARKMAA 154
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 29.0 bits (65), Expect = 4.0
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 219 LQKAKMKLGVEVLV-NDPEKLDGIRARESDITKERINKILATGANVILVSGGIDD 272
L++A+ K+ +E + + ++++ ++ IL GA + +
Sbjct: 691 LERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQK 745
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 28.3 bits (63), Expect = 5.3
Identities = 8/75 (10%), Positives = 18/75 (24%), Gaps = 18/75 (24%)
Query: 199 ASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILA 258
A K+ + + S +K+ +S R +
Sbjct: 213 GMDAFKELAAQEGL-SIAHS-----------------DKIYSNAGEKSFDRLLRKLRERL 254
Query: 259 TGANVILVSGGIDDL 273
A V++ +
Sbjct: 255 PKARVVVCFCEGMTV 269
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 28.0 bits (63), Expect = 5.9
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 223 KMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGA 261
K L E V L I+ + I++E++ L G
Sbjct: 288 KNALT-EATV---NLLVNIQRKREQISREQVFNCLQAGK 322
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 28.0 bits (63), Expect = 6.4
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 240 GIRAR----ESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA 283
GI A + ++ + L GA ++ V G DD L+ +
Sbjct: 100 GILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDD-ALRLTQKLTE 146
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 27.4 bits (61), Expect = 8.5
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 240 GIRAR----ESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA 283
GI + + I+ ++ + +A GA V+ + D C+K E A
Sbjct: 207 GIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDG-CMKLIREITA 253
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2,
protein structure initiative; 2.24A
{Caldicellulosiruptor saccharolyticus}
Length = 178
Score = 27.0 bits (61), Expect = 9.4
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 20/60 (33%)
Query: 39 ILRLLEVEHPAARVLVELAQ---LQDEEV------------GDGTTSVVIVAAELLKNAD 83
I + + R+L +L + + AA L++ D
Sbjct: 91 ICKSENISDFIERMLSQLLLPYNVNGNLIRVNFNIGAAQIENSNEA-----AANLMRRCD 145
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 27.2 bits (61), Expect = 9.8
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 240 GIRAR----ESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGA 283
G+RA + + ++++ + GA V+ + G DD L + G
Sbjct: 102 GLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFDD-ALNIVRKIGE 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.355
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,096,985
Number of extensions: 387729
Number of successful extensions: 1138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1041
Number of HSP's successfully gapped: 59
Length of query: 407
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 311
Effective length of database: 4,021,377
Effective search space: 1250648247
Effective search space used: 1250648247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)