RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14917
(407 letters)
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 143 bits (361), Expect = 7e-42
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 5/173 (2%)
Query: 185 ESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRAR 244
+S +++G +N V M++ I N +I LD SL+ K + ++ + E I
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60
Query: 245 ESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGAS 304
E + + I+ +V++ GI DL Y + A A+RRV+K D RIA+A GA
Sbjct: 61 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 120
Query: 305 FLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRG 357
++ + ++ + L E ++ D+ I K A +I+LRG
Sbjct: 121 IVSRPEELREDDVGTGAGLLE-----IKKIGDEYFTFITDCKDPKACTILLRG 168
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 134 bits (338), Expect = 1e-38
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 6/156 (3%)
Query: 191 GYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITK 250
G ++ V M K++ NAKIA ++ +L+ K + ++ + P++L +E + K
Sbjct: 2 GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLK 61
Query: 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLS 310
+ ++ I TGANV+ V GIDDL Y + G MAVRRVKK D++++AKATGA +T++
Sbjct: 62 DMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVK 121
Query: 311 NMEGEESFEASSLGEAAEVVQTQVCDDELILINGPK 346
++ E+ LG A V + ++ + +I + G K
Sbjct: 122 DLTPED------LGYAEVVEERKLAGENMIFVEGCK 151
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 130 bits (327), Expect = 4e-37
Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 6/158 (3%)
Query: 189 VQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDI 248
+ G ++ M + NAKIA +D +L+ K ++ +V ++DP K+ +E++
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 249 TKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTS 308
K+ + KI +GANV+L GIDD+ Y + G AVRRVKK D++++AKATGA +T
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 309 LSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPK 346
L ++ LGEA V + ++ DD + + G K
Sbjct: 121 LDDLTPSV------LGEAETVEERKIGDDRMTFVMGCK 152
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 127 bits (320), Expect = 5e-36
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 191 GYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITK 250
G ++ M + +AKIA LD L+ K + + + DP + A+E ++ +
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLR 60
Query: 251 ERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLS 310
E ++KI + GANV++ GIDD+ Y AG AVRRVKK D+ ++AKATGAS ++++
Sbjct: 61 EMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTID 120
Query: 311 NMEGEESFEASSLGEAAEVVQTQVCDDELILINGPK 346
+ + LG A V Q +V +D + + G K
Sbjct: 121 EISSSD------LGTAERVEQVKVGEDYMTFVTGCK 150
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 120 bits (302), Expect = 2e-32
Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA AIA+ V+++LGP G+DKMLVD IGD+ ++NDGATIL+ ++VEHP A+++VE+++ Q
Sbjct: 13 EAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQ 72
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D VGDGTT+ V+++ ELLK A+ L+ Q +HPT + +GYRLA EA K I + S
Sbjct: 73 DTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLW 132
Query: 121 LGKECLINAA-KTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAH 179
G A + + + +G + A + I T PI + LKA
Sbjct: 133 GGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAD 192
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 112 bits (281), Expect = 2e-29
Identities = 74/184 (40%), Positives = 104/184 (56%), Gaps = 3/184 (1%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
AA AI+N V+SSLGP G+DKMLVD +GD+ +TNDG TIL+ ++VEHPAA+++VE+++ Q
Sbjct: 9 EAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQ 68
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLT--ISV 118
D VGDGTT+ VI+A LL+ A L+ Q +HPT + GYR+A +EA + I + T
Sbjct: 69 DSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYA 128
Query: 119 DELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIK-AINLLK 177
G A + ++ IG DA + I PI + L
Sbjct: 129 AGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRA 188
Query: 178 AHGK 181
H K
Sbjct: 189 EHAK 192
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 97.5 bits (242), Expect = 7e-24
Identities = 61/132 (46%), Positives = 92/132 (69%)
Query: 1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
+AA IA V+++LGP G+DKMLVD +GD+ VTND ATIL ++++HPAA+++VE+A+ Q
Sbjct: 22 LAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQ 81
Query: 61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
D+E GDGTT+ V++A ELL+ A+EL+ Q IHP+ + GY LA ++A + + + +V
Sbjct: 82 DKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLP 141
Query: 121 LGKECLINAAKT 132
G I A
Sbjct: 142 AGGAPEIELAIR 153
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 81.4 bits (200), Expect = 3e-18
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELA 57
+ +A+ VK +LGP G + +L G T+T DG ++ R +E+E A+++ E+A
Sbjct: 18 GVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVA 77
Query: 58 QLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTIS 117
++ GDGTT+ ++A ++ + V ++P + G A A + ++ ++
Sbjct: 78 SKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKAL-SVG 136
Query: 118 VDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQA 156
V G LI A + D N + + A +A
Sbjct: 137 VVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEA 175
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 75.3 bits (185), Expect = 2e-17
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 118 VDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLK 177
VD +E L+ A TS++ K A + V+A + + +K G + I K
Sbjct: 1 VDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVA-EKKDGKYVVDLDNIKFEK 59
Query: 178 AHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSL 219
G+ ES LV+ + + I + A D
Sbjct: 60 KAGEGVEESELVKAVTILI---RGGTEHVIDEVERALEDAVK 98
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 73.3 bits (180), Expect = 9e-17
Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 123 KECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKS 182
K L+ A+TS++SK + A + +A +++ + G I ++K G +
Sbjct: 5 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVA-ELRDGKYYVDFDNIQVVKKQGGA 63
Query: 183 ARESVLVQGYALNC-----TVASQAMKKKITNAKIACLDFSLQK 221
++ L+ M++ IT++ + + +L+
Sbjct: 64 IDDTQLINKAVSILVRGETEHVVDEMERSITDS-LHVVASALED 106
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 76.3 bits (187), Expect = 2e-16
Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 7/175 (4%)
Query: 2 AASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHP----AARVLVELA 57
+ +A+ VK +LGP G + ++ G +T DG ++ + +E+ A+++ E+A
Sbjct: 18 GVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVA 77
Query: 58 QLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTIS 117
++E GDGTT+ ++A +++ + V ++P + G +A + + I+
Sbjct: 78 SRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARGI 137
Query: 118 VDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI--KITEKSGNVTYPI 170
V G L+ AK D + ++ A +A +I E +G +
Sbjct: 138 VVGGGV-ALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVV 191
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 69.9 bits (171), Expect = 1e-15
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 123 KECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKS 182
L A T++S K G ++F A +VV A A+ + G I + K +G S
Sbjct: 3 DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVA-EVRDGKTIVDTANIKVDKKNGGS 61
Query: 183 ARESVLVQGYALNCTVASQAMKKKITNAKIACLD 216
++ + + ++ + A D
Sbjct: 62 VNDTQFISAV---SILIRGGTDHVVSEVERALND 92
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 67.2 bits (163), Expect = 3e-13
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 3 ASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEV----EHPAARVLVELAQ 58
+A+AN VK +LGP G + +L G T+T DG T+ + +E+ E+ A++L E+A
Sbjct: 18 VNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVAS 77
Query: 59 LQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISV 118
++ GDGTT+ ++A +++ + V +P ++ G A + A + I+
Sbjct: 78 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVG 137
Query: 119 DELGKECLIN 128
G +
Sbjct: 138 IVPGGGVTLL 147
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 52.5 bits (125), Expect = 9e-09
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 45 VEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACK 104
E A ++ E+A+ D+ GDGTT+ ++A L++ V +P + G A +
Sbjct: 3 YEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVE 62
Query: 105 EACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAI--KITEK 162
+ + + + I + A ++ + D+ A +V A +A +I
Sbjct: 63 KVTETLLKGAKIVAG---GGVTLLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFN 119
Query: 163 SG 164
SG
Sbjct: 120 SG 121
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 30.5 bits (68), Expect = 0.40
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 201 QAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATG 260
+ ++K T+ + + K L EVL + +AR ++T E + + +
Sbjct: 333 EQIRKDYTSGAMLTGEL-----KKALI-EVLQ---PLIAEHQARRKEVTDEIVKEFMTPR 383
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 313
Score = 29.5 bits (65), Expect = 0.79
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 225 KLGVEVLVNDPEKLDGIRARES-DITKERINKILATGANVILVSGG---IDDLCLKYFVE 280
LG L +K ++ T +I +I+A G V++ G + L L
Sbjct: 7 ALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAG 66
Query: 281 AGAMAVRRV-KKVDLKRIAKATGASFLTSLSNM 312
+ V G +L N
Sbjct: 67 QATYGIPAQPMDVAGAMSQGWIGYMIQQALKNE 99
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 27.0 bits (58), Expect = 3.9
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 253 INKILATGANVIL-VSGGIDDLCL 275
+N+ L T +++ SGG+D L
Sbjct: 6 LNRQLLTSRQILVAFSGGLDSTVL 29
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia
coli [TaxId: 562]}
Length = 168
Score = 26.5 bits (57), Expect = 4.6
Identities = 9/62 (14%), Positives = 20/62 (32%)
Query: 172 AINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVL 231
+ L+ + V V G + + + + ++A LG + +
Sbjct: 19 TYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEV 78
Query: 232 VN 233
VN
Sbjct: 79 VN 80
>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
[TaxId: 1352]}
Length = 307
Score = 26.9 bits (58), Expect = 5.0
Identities = 14/126 (11%), Positives = 36/126 (28%), Gaps = 7/126 (5%)
Query: 225 KLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGG---IDDLCLKYFVEA 281
LG ++++ + + + ++ G +I+ G + +L L+
Sbjct: 7 ALGGNAILSNDASAHAQQQALVQTSAY-LVHLIKQGHRLIVSHGNGPQVGNLLLQQQAAD 65
Query: 282 GAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELIL 341
+ + G +L+ + + A + Q V +
Sbjct: 66 SEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQ---VATVLTQVVVDPADEAF 122
Query: 342 INGPKA 347
N K
Sbjct: 123 KNPTKP 128
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 26.7 bits (58), Expect = 5.8
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 17 VGLDKMLVDDIGDV--TVTNDGATILRLLEVEHPAAR 51
V L +++ D TN I+ +L +E A R
Sbjct: 1310 VNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIE--AGR 1344
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 24.3 bits (53), Expect = 7.6
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 338 ELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRV 380
L+ ++G R A + + + S +L V +
Sbjct: 10 ALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGI 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.355
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,390,733
Number of extensions: 64540
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 22
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)