RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14918
(463 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 1e-07
Identities = 81/494 (16%), Positives = 133/494 (26%), Gaps = 203/494 (41%)
Query: 90 RPIVFLSG---CYFMVSIGYLIRVSVGHEE-VACEDQMVRYGASGPTPCTLVFLLVYFFG 145
RP+ G +V S E+ + A+ P T L+ F G
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 146 M----------SSYIWWVILSFTWFLAAGLKWGNEAIASYSLYFH-LAAWLIP----TVK 190
+ + L T F L+ GN+ I H LAA L+ T+
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-GND-I-------HALAAKLLQENDTTLV 117
Query: 191 SVSVIIMSAVDGDTIAGICYVGNHN--------IHNLKYFVVFPLIIYLILGIIFLFGGF 242
+I + + +A + N N + + I FGG
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ--------LVAI------FGG- 162
Query: 243 ISLFRIRNVIKNQGGISNRTKADKLEKLMIRIGIFSVLSTLPASIVIGCLIYESYVYNEY 302
QG + ++L L Y++Y +
Sbjct: 163 ------------QG--NTDDYFEELRDL-----------------------YQTY--HVL 183
Query: 303 VESIVCPCSEKL-------------------------------DKDYFK------PLHVV 325
V ++ +E L DKDY PL V
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 326 LLLKYFMALA--VGLTSG--VWIWSGKTF--------------SSWKKLWNRLFGFNNNT 367
+ L +++ A +G T G G T SW+ F +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE-------SFFVSV 296
Query: 368 TRVLINTNKHRVL-----KQHDYLPPLAHGMPPPPNIPIPAVPVMGGGAHSMTS----SL 418
+ + VL + ++ P + PP+I ++ G M S +
Sbjct: 297 RKAI------TVLFFIGVRCYEAYPNTS----LPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 419 KQ--------N---PYSSHVH---KNERK------------------KKKKKKKKKKKKK 446
+Q N P V N K +K K + +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 447 KKKKKKKKKWSFRF 460
++K K+S RF
Sbjct: 407 IPFSERKLKFSNRF 420
Score = 31.6 bits (71), Expect = 0.67
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 46/123 (37%)
Query: 1 M---TGIVRASVAPHSSPLNENPIASNSPYNRSIAVSGINNCAYPCQGIFFSQPEREFAS 57
M + + + V + + N S+ P + + +S +N +
Sbjct: 338 MLSISNLTQEQVQDYVNKTN-----SHLPAGKQVEISLVNG------------AKN---- 376
Query: 58 MWIFVMSALCCISTLMTLTTFL--------IDTERFKYPERPIVFLSGCYFMVSIGYLIR 109
V+S +L L L +D R + ER + F S +L
Sbjct: 377 ---LVVSGP--PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF--------SNRFL-P 422
Query: 110 VSV 112
V+
Sbjct: 423 VAS 425
Score = 29.2 bits (65), Expect = 3.7
Identities = 37/211 (17%), Positives = 60/211 (28%), Gaps = 78/211 (36%)
Query: 78 FLIDTERFKYPERPIVFLSGCYFMVSIGYLIRVSVGHEEVACEDQMVRYGASGPTPCTLV 137
F I P + +F G IR + + E G +
Sbjct: 1659 FSILDIVINNPVNLTI-----HFGGEKGKRIRE--NYSAMIFET-----IVDGKLKTEKI 1706
Query: 138 FLLVYFFGMSSYIWW---VILSFTWF---------LAA-------GLKWGNEAIASYSL- 177
F + +SY + +LS T F AA GL + A +SL
Sbjct: 1707 FKEINE-HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 178 -YFHLAAW--LIP---TVKSV------------------SVIIMSAVDGDTIA------- 206
Y LA+ ++ V+ V S M A++ +A
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 207 -------------GICYVGNHNIHNLKYFVV 224
+ + N+N+ N +Y V
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQY-VA 1855
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 39.6 bits (92), Expect = 2e-04
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWS 457
K++ K K KK KKKWS
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWS 28
Score = 32.3 bits (73), Expect = 0.072
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ K K KK KKK KK
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKS 31
Score = 31.9 bits (72), Expect = 0.12
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K + K K KK KKK KK
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKK 30
Score = 31.1 bits (70), Expect = 0.18
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFR 459
++ K K KK KKK K S +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMK 33
Score = 30.7 bits (69), Expect = 0.29
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K + KK KKK KK K +
Sbjct: 9 KAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.5 bits (58), Expect = 7.5
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKK 450
KQ + KK KKK KK K +
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 39.8 bits (92), Expect = 3e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
K +KK K+ K + KK KKKW+
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWT 31
Score = 32.5 bits (73), Expect = 0.13
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
++K K+ K + KK KKK K
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKG 33
Score = 31.3 bits (70), Expect = 0.26
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
++ K+ K + KK KKK K K
Sbjct: 8 GQKKTKEAIAKAAQAKKGGKKKWTKGK 34
Score = 31.3 bits (70), Expect = 0.28
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFR 459
+KK K+ K + KK KKK K +
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 31.3 bits (70), Expect = 0.28
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
KQ K K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 31.3 bits (70), Expect = 0.31
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + P + E K + KK KKK K K K K
Sbjct: 1 MGKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 37.7 bits (87), Expect = 0.001
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKWS 457
+K K K K K+KKKKWS
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWS 29
Score = 34.2 bits (78), Expect = 0.016
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFR 459
K ++ K K K+KKKK K +
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 31.5 bits (71), Expect = 0.18
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K K K+KKKK K K+K+K
Sbjct: 10 PPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 29.2 bits (65), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
++ K K+KKKK K K+K+K S F
Sbjct: 12 SSKPAKSGGGKQKKKKWSKGKQKEKVNNSVLF 43
Score = 27.7 bits (61), Expect = 3.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 414 MTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKK 449
M + P S K+KKKK K K+K+K
Sbjct: 1 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.3 bits (60), Expect = 4.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKK 451
K++ K + K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 42/168 (25%)
Query: 262 TKADKLEKLMIRIGIFSVLSTLPASIVIGCLIYESYVYNEY--VESIVCPCSEKLDKDYF 319
+ L + ++ LS + SI G ++++ + + +I+ L+ +
Sbjct: 313 CRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 320 KPLHVVLLLKYFMALAVGLTSGVWI--------WSGKTFSSWKKLWNRLFGF-----NNN 366
+ K F L+V I W S + N+L +
Sbjct: 372 R--------KMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 367 TTRVLIN-------------TNKHRVLKQHDYLPPLA---HGMPPPPN 398
+ + I HR + H Y P + PP
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYL 469
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 39.4 bits (91), Expect = 0.002
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K NP + V + +K + K K++ K +K K
Sbjct: 331 FKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKT 368
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 37.9 bits (87), Expect = 0.004
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+ E +KK+K +K K + K R +++
Sbjct: 18 RRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQY 53
Score = 34.4 bits (78), Expect = 0.053
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
E+K+K +K K + K + +
Sbjct: 25 AAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYE 58
Score = 34.4 bits (78), Expect = 0.056
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 414 MTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
M S + V R+++ +KK+K +K K + + R
Sbjct: 1 MASEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 31.0 bits (69), Expect = 0.60
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
K+++++ +KK+K +K K +
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAENTKVIY 47
Score = 28.6 bits (63), Expect = 4.0
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K + +K K + K + ++ +
Sbjct: 28 KKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDK 62
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 37.5 bits (86), Expect = 0.005
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+ K +K K +++K + K++K +W + Q++
Sbjct: 14 ARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKY 48
Score = 33.6 bits (76), Expect = 0.094
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K + +K +K K +++K + K++ + +
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISK 44
Score = 33.6 bits (76), Expect = 0.095
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
+ + +++K + K++K + K +
Sbjct: 20 RKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYE 53
Score = 32.8 bits (74), Expect = 0.15
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+K + +K +K K +++K + + +
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWI 42
Score = 32.8 bits (74), Expect = 0.16
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKWSFR 459
+K +K K +++K + K++K
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQRKAEWIS 43
Score = 32.1 bits (72), Expect = 0.30
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
S V +N +KK + +K +K K +++K +
Sbjct: 2 SKFVPENVQKKLARDEKLRKAKAEQRKASSAQ 33
Score = 27.4 bits (60), Expect = 7.9
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
+ + + K++K + K +K + +
Sbjct: 26 QRKASSAQMKQRKAEWISKAQKYAAEYEA 54
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 37.5 bits (86), Expect = 0.005
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 372 INTNKHRVLKQHDYLPPLAHGMPPPPNIPIPAVPVMGGGAHSMTSSLKQNPYSSHVHKNE 431
+ K +V L P +PAVP + K+ +N
Sbjct: 4 VPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPE---------TLKKK-------RRNF 47
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+ K K+ +KK K +K ++K + + +
Sbjct: 48 AELKVKRLRKKFALKTLRKARRKLIYEKAKHY 79
Score = 29.8 bits (66), Expect = 1.7
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K RK ++K +K K K+ ++ + R R
Sbjct: 61 LKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMAR 95
Score = 29.8 bits (66), Expect = 1.9
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
++ K +K ++K +K K K + R
Sbjct: 57 KKFALKTLRKARRKLIYEKAKHYHKEYRQMYR 88
Score = 28.7 bits (63), Expect = 3.6
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K K +K ++K +K K K+ +
Sbjct: 58 KFALKTLRKARRKLIYEKAKHYHKEYR 84
Score = 28.7 bits (63), Expect = 4.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + K +K ++K +K K K+
Sbjct: 56 RKKFALKTLRKARRKLIYEKAKHYHKE 82
Score = 28.3 bits (62), Expect = 4.9
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
K K +K ++K +K K K+
Sbjct: 57 KKFALKTLRKARRKLIYEKAKHYHKEYRQ 85
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 37.1 bits (85), Expect = 0.008
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 407 MGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKK 450
MG H S P SH+ ++ + KK
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSSSVLASCPKK 44
Score = 32.1 bits (72), Expect = 0.28
Identities = 2/32 (6%), Positives = 7/32 (21%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
H H + + ++ +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSSSV 37
Score = 27.9 bits (61), Expect = 6.7
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
SSH H + + ++ +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS 34
Score = 27.9 bits (61), Expect = 7.2
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
S H H + + ++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSS 35
Score = 27.5 bits (60), Expect = 8.4
Identities = 2/32 (6%), Positives = 7/32 (21%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
H H + + ++ +
Sbjct: 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSSS 36
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 35.4 bits (81), Expect = 0.009
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSF 458
+ KK K +K K KKKK+K+K S+
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKKRKRKESY 35
Score = 34.3 bits (78), Expect = 0.023
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K K KK K +K K KKKK+K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRK 30
Score = 33.9 bits (77), Expect = 0.030
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
K +K K +K K KKKK+K+K+ ++
Sbjct: 8 KAAKKAGKAQKNITKTDKKKKRKRKESYA 36
Score = 32.4 bits (73), Expect = 0.093
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + KK K +K K KKKK+K+
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 32.0 bits (72), Expect = 0.14
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+ K KK K +K K KKK R + +
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKESY 35
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 36.7 bits (84), Expect = 0.010
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
KN K KK KK+ +K+W
Sbjct: 3 QGKNPGLKAGGGKK-GAKKRTIDPLSRKEW 31
Score = 28.6 bits (63), Expect = 4.5
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 437 KKKKKKKKKKKKKKKKKKKWSFRFQRF 463
K K KK KK+ + +
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKEW 31
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 37.1 bits (85), Expect = 0.011
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
LK NPY K + + K +K+K K+ K
Sbjct: 331 LKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSP 368
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 35.1 bits (80), Expect = 0.011
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
KK KK K +KK KK+KK + +
Sbjct: 11 PKKGSKKAVTKTQKKGDKKRKKSRKESYSIY 41
Score = 34.8 bits (79), Expect = 0.015
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSF 458
+K KK K +KK KK+KK +K S+
Sbjct: 9 PAPKKGSKKAVTKTQKKGDKKRKKSRKESY 38
Score = 32.4 bits (73), Expect = 0.095
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 422 PYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
P S + KK K +KK KK+KK +K+ +S
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYS 39
Score = 32.1 bits (72), Expect = 0.11
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+ KK KK K +KK KK+ R + +
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESY 38
Score = 31.7 bits (71), Expect = 0.21
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + KK KK K +KK KK
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKK 29
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 35.0 bits (80), Expect = 0.016
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKWSFR 459
E K+K K+ K K +KK W+
Sbjct: 107 ELKRKIKRTSGKAITKLLSEKKGDTWASV 135
Score = 28.4 bits (63), Expect = 2.5
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
++ + K +K ++ K+ K+K K+
Sbjct: 87 YRLRKVKILGEKPNTRRSFKELKRKIKR 114
Score = 28.0 bits (62), Expect = 3.7
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKK 453
+ + + +K ++ K+ K+K K+
Sbjct: 87 YRLRKVKILGEKPNTRRSFKELKRKIKR 114
Score = 27.6 bits (61), Expect = 5.9
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKK 452
K + K+ K K +KK
Sbjct: 108 LKRKIKRTSGKAITKLLSEKKGDTW 132
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 35.9 bits (82), Expect = 0.017
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 389 LAHGMPPPPNIPIPAVPVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKK 448
L G P P P P + + + KK K ++KKKK+ K
Sbjct: 52 LVIGQATRPQNPRPRPP-------------PRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Query: 449 KKKKKKKWSFRFQR 462
K K+++ + + +
Sbjct: 99 KPGKRQRMALKLEA 112
Score = 35.6 bits (81), Expect = 0.024
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 385 YLPPLAHGMPPPPNIPIPAVPVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKK 444
+ P P P A + ++++ + + ++KK+ K+
Sbjct: 21 WRPRRRRQAAPMPARNGLA-SQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQP 79
Query: 445 KKKKKKKKKKK 455
K KK K ++K
Sbjct: 80 PKPKKPKPQEK 90
Score = 32.1 bits (72), Expect = 0.27
Identities = 10/71 (14%), Positives = 19/71 (26%)
Query: 385 YLPPLAHGMPPPPNIPIPAVPVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKK 444
P P +P G A + + + + ++K
Sbjct: 13 PFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQK 72
Query: 445 KKKKKKKKKKK 455
K+ K+ K K
Sbjct: 73 KQAPKQPPKPK 83
Score = 30.9 bits (69), Expect = 0.67
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K ++ K ++KKKK+ K K K+++ R
Sbjct: 81 KPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 34.2 bits (79), Expect = 0.018
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
E K+ +K++ KK K +
Sbjct: 83 VPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 32.7 bits (75), Expect = 0.059
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ K+ +K++ KK K +
Sbjct: 83 VPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 31.5 bits (72), Expect = 0.17
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
V + K+ +K++ KK K +
Sbjct: 82 VVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 30.8 bits (70), Expect = 0.26
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + + K+ +K++ KK K
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSK 107
Score = 28.8 bits (65), Expect = 1.3
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKWS 457
+ + + K+ +K++ K S
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKS 106
Score = 27.7 bits (62), Expect = 3.1
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKK 450
LK+ + K +K++ KK K +
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 36.0 bits (82), Expect = 0.022
Identities = 12/55 (21%), Positives = 16/55 (29%)
Query: 401 IPAVPVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+P P S L P + + K K KK K +K K
Sbjct: 255 LPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 33.6 bits (76), Expect = 0.10
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKK 454
K K K KK K +K K
Sbjct: 285 KFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 33.6 bits (76), Expect = 0.13
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K +K K +K K K K +F F
Sbjct: 292 KTGKKNSKMTAAQKALAKVDKSGMKSIDAF-FGA 324
Score = 33.3 bits (75), Expect = 0.16
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
N + K KK K +K K K
Sbjct: 286 FNTKDLKTGKKNSKMTAAQKALAKVDK 312
Score = 32.9 bits (74), Expect = 0.18
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
KK K +K K K K
Sbjct: 291 LKTGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 32.1 bits (72), Expect = 0.32
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKK 454
+ K KK K +K K K
Sbjct: 288 TKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 31.7 bits (71), Expect = 0.47
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ KK K +K K K K
Sbjct: 290 DLKTGKKNSKMTAAQKALAKVDKSGMK 316
Score = 31.0 bits (69), Expect = 0.83
Identities = 11/55 (20%), Positives = 13/55 (23%), Gaps = 10/55 (18%)
Query: 411 AHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKK----------KKKKKKKKK 455
+ K N K K +K K K K KK K
Sbjct: 277 VEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 29.8 bits (66), Expect = 1.7
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
+E + K+ K K K KK K +
Sbjct: 273 SDEPVEAKEDYTKFNTKDLKTGKKNSKMT 301
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 35.6 bits (81), Expect = 0.024
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
K ++K ++ ++ +K K+K+ R +
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAIILERNAAY 51
Score = 33.6 bits (76), Expect = 0.11
Identities = 3/34 (8%), Positives = 12/34 (35%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
+ ++ +K K+K+ ++ +
Sbjct: 23 AEQVAAERAARKAANKEKRAIILERNAAYQKEYE 56
Score = 32.9 bits (74), Expect = 0.17
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K + ++K ++ ++ +K K+K + +R
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILER 47
Score = 32.5 bits (73), Expect = 0.23
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKK 454
+ + ++ ++ +K K+K+
Sbjct: 18 AQQKTAEQVAAERAARKAANKEKRAII 44
Score = 32.1 bits (72), Expect = 0.30
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+K K ++K ++ ++ +K R
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIIL 45
Score = 30.2 bits (67), Expect = 1.3
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKK 453
+ +K K+K+ ++
Sbjct: 25 QVAAERAARKAANKEKRAIILERNAA 50
Score = 29.8 bits (66), Expect = 1.6
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
ER +K K+K+ ++ +K +R
Sbjct: 27 AAERAARKAANKEKRAIILERNAAYQKEYETAER 60
Score = 29.8 bits (66), Expect = 1.9
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
E + KK K ++K ++ ++ +K
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARK 34
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 35.4 bits (81), Expect = 0.026
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 416 SSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFR 459
+++++NP K E KKK+ + K +KK + +KK SF
Sbjct: 245 AAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFL 288
Score = 33.5 bits (76), Expect = 0.13
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKK 454
H R+ +KK KK+ KKK+ + K
Sbjct: 243 AHAAIRENPVYEKKPKKEVKKKRWNRPK 270
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 35.5 bits (82), Expect = 0.031
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K ++K ++ K K+K +K++ +K+
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 35.1 bits (81), Expect = 0.044
Identities = 6/27 (22%), Positives = 20/27 (74%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+N+++++ ++K ++ K K+K +K++
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERL 337
Score = 34.7 bits (80), Expect = 0.048
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K +K+++ ++K ++ K K+K +K++
Sbjct: 308 AVKENQKRRETEEKMRRAKLAKEKAEKER 336
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 35.7 bits (82), Expect = 0.032
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+E KKKKKKKKK+ K
Sbjct: 84 DDEDGDGDGDGATGKKKKKKKKKRGPK 110
Score = 35.3 bits (81), Expect = 0.037
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ KKKKKKKKK+ K
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 35.3 bits (81), Expect = 0.042
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKW 456
+ KKKKKKKKK+ K +
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 34.9 bits (80), Expect = 0.048
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
++E + KKKKKKKKK+
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 34.9 bits (80), Expect = 0.050
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+++ KKKKKKKKK+
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGP 109
Score = 33.0 bits (75), Expect = 0.23
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
+ ER + + KKKKKKK
Sbjct: 76 LEDKERDEDDEDGDGDGDGATGKKKKKKKK 105
Score = 31.4 bits (71), Expect = 0.68
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 428 HKNERKKKKKKKKKKKKKKKKK 449
+ KKKKKKKKK+ K
Sbjct: 90 GDGDGATGKKKKKKKKKRGPKV 111
>3ffd_P PTH-RP, PTHRP, parathyroid hormone-related protein; PTHRP complexed
to FAB, alternative splicing, calcium, cleavage on PAIR
of basic residues; 2.00A {Homo sapiens} PDB: 1bzg_A
Length = 108
Score = 33.6 bits (76), Expect = 0.034
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 387 PPLAHGMPPPPNIPIPAVPVMGG--GAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKK 444
++ P PN V G + + K Y K KKKK K K+K+
Sbjct: 40 SEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKE 99
Query: 445 KKKKKKKKK 453
++KKK++ +
Sbjct: 100 QEKKKRRTR 108
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 34.3 bits (78), Expect = 0.036
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
+ P + ++ K++ KK K +KK KK + S
Sbjct: 98 SEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKS 136
Score = 28.1 bits (62), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
ER KK K +KK KK + K +K +
Sbjct: 117 ERIKKTKDEKKAKKAEVAKSQKTQS 141
Score = 28.1 bits (62), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
E K++ KK K +KK KK + K +K
Sbjct: 114 EIKERIKKTKDEKKAKKAEVAKSQK 138
Score = 27.7 bits (61), Expect = 5.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ +++ KK K +KK KK + K +K
Sbjct: 113 REIKERIKKTKDEKKAKKAEVAKSQKT 139
Score = 26.9 bits (59), Expect = 9.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + + KK K +KK KK + K +K +
Sbjct: 114 EIKERIKKTKDEKKAKKAEVAKSQKTQ 140
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 35.2 bits (80), Expect = 0.038
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 385 YLPPLAHGMPPPPNIPIPAVPVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKK 444
YLPPL P + P + + ER ++K+++K +++
Sbjct: 21 YLPPLEK--LPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78
Query: 445 KKKKKKKKKK 454
+++ + + K
Sbjct: 79 QQEVETELKM 88
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 33.5 bits (76), Expect = 0.042
Identities = 2/52 (3%), Positives = 10/52 (19%)
Query: 412 HSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+ ++ + K+ + + +F
Sbjct: 85 DVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTL 136
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 35.0 bits (80), Expect = 0.044
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
VH R K KK+ K+ KK ++ QR
Sbjct: 243 VHAAIRADPTMAKSTKKEPATHKRYNLKKLTYE-QR 277
Score = 30.4 bits (68), Expect = 1.0
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 416 SSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKK-KKKKWSFR 459
++++ +P + K E K+ KK +++K ++ +
Sbjct: 245 AAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289
Score = 29.2 bits (65), Expect = 2.4
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
+ + K KK+ K++
Sbjct: 239 LYKKVHAAIRADPTMAKSTKKEPATHKRY 267
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 33.7 bits (77), Expect = 0.045
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 429 KNERKKKKKKKKKKKKKKKKK-----KKKKKKWSFRFQR 462
++ K ++ K K K K KK + S F R
Sbjct: 6 AVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHR 44
Score = 32.9 bits (75), Expect = 0.085
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 33.7 bits (77), Expect = 0.051
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K + K K K KK K K RF R
Sbjct: 6 KTQAVNKAKNTAKVAKKGSSITKHKTYTGVRFFR 39
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 33.5 bits (77), Expect = 0.059
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKK 452
L+ +P ++ V E K +++ +KK + K
Sbjct: 124 LRNHPAAASVVAREMKIVTERRAEKKADSRVTYSK 158
Score = 30.0 bits (68), Expect = 0.95
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQ 461
++ K +++ +KK + +S FQ
Sbjct: 129 AAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 34.5 bits (78), Expect = 0.074
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K R+KK KK KK KK KK
Sbjct: 370 KKPRRKKGKKTVGVKKPKKPVVGKKAA 396
Score = 33.7 bits (76), Expect = 0.11
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
E+ KK ++KK KK KK KK
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKK 388
Score = 33.3 bits (75), Expect = 0.17
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
KK KK KK KK KK
Sbjct: 384 KKPKKPVVGKKAAATKKPAADKK 406
Score = 32.5 bits (73), Expect = 0.28
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
++ ++KK KK KK KK KK
Sbjct: 368 PGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 32.5 bits (73), Expect = 0.31
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + KK KK KK KK KK
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKK 400
Score = 32.2 bits (72), Expect = 0.34
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K +K KK KK KK +K
Sbjct: 384 KKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 32.2 bits (72), Expect = 0.40
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K +K KK KK KK KK
Sbjct: 375 KKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 32.2 bits (72), Expect = 0.41
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKK 454
+ KK KK KK +KK
Sbjct: 386 PKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 32.2 bits (72), Expect = 0.42
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
V + ++KK KK KK KK KK
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKKA 395
Score = 31.8 bits (71), Expect = 0.43
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ ++ KK KK KK KK K
Sbjct: 373 RRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 31.4 bits (70), Expect = 0.58
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
KK KK KK KK K
Sbjct: 383 VKKPKKPVVGKKAAATKKPAADK 405
Score = 31.4 bits (70), Expect = 0.58
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K ++ KK KK KK +KK
Sbjct: 385 KPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 31.4 bits (70), Expect = 0.63
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+K KK KK KK KK
Sbjct: 372 PRRKKGKKTVGVKKPKKPVVGKKAAAT 398
Score = 31.4 bits (70), Expect = 0.71
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K KK ++KK KK KK KK
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVV 391
Score = 31.0 bits (69), Expect = 0.89
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + KK ++KK KK KK KK
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKP 389
Score = 31.0 bits (69), Expect = 0.92
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
++ KK KK KK KK
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPA 408
Score = 30.6 bits (68), Expect = 0.99
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
V + KK KK KK KK +
Sbjct: 381 VGVKKPKKPVVGKKAAATKKPAADKKPAE 409
Score = 30.6 bits (68), Expect = 1.1
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K KK KK KK KK
Sbjct: 378 KKTVGVKKPKKPVVGKKAAATKKPAAD 404
Score = 30.6 bits (68), Expect = 1.2
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ KK KK KK KK
Sbjct: 377 GKKTVGVKKPKKPVVGKKAAATKKPAA 403
Score = 30.6 bits (68), Expect = 1.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
KK ++KK KK KK KK
Sbjct: 366 GVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Score = 30.2 bits (67), Expect = 1.5
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K ++ KK KK KK KK
Sbjct: 376 KGKKTVGVKKPKKPVVGKKAAATKKPA 402
Score = 29.5 bits (65), Expect = 2.8
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K KK KK KK +KK
Sbjct: 387 KKPVVGKKAAATKKPAADKKPAEKKPTT 414
Score = 27.9 bits (61), Expect = 6.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
++ KK KK +KK ++K
Sbjct: 393 KKAAATKKPAADKKPAEKKPTTEEK 417
Score = 27.9 bits (61), Expect = 7.7
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
KK KK KK +KK +
Sbjct: 392 GKKAAATKKPAADKKPAEKKPTTE 415
Score = 27.9 bits (61), Expect = 8.5
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ KK KK +KK ++KK
Sbjct: 392 GKKAAATKKPAADKKPAEKKPTTEEKK 418
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a
3u5e_Z 3u5i_Z
Length = 136
Score = 32.8 bits (74), Expect = 0.075
Identities = 10/52 (19%), Positives = 26/52 (50%)
Query: 412 HSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+++ ++ S+ + ++++ KK KK +++ + K +W F RF
Sbjct: 85 YTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 34.2 bits (78), Expect = 0.076
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
+ + + + K K+ +K
Sbjct: 8 QEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 33.8 bits (77), Expect = 0.11
Identities = 4/35 (11%), Positives = 12/35 (34%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSF 458
S+ ++ + + + K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 32.6 bits (74), Expect = 0.28
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 414 MTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKK 452
M S+ Y +++ + K K+ +K
Sbjct: 1 MASN---RRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 31.1 bits (70), Expect = 0.77
Identities = 4/35 (11%), Positives = 8/35 (22%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSF 458
+N + K K+ +K
Sbjct: 6 RYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIIII 40
Score = 31.1 bits (70), Expect = 0.81
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ + + + + K K+ +K S
Sbjct: 5 RRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 30.7 bits (69), Expect = 1.0
Identities = 4/41 (9%), Positives = 9/41 (21%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSF 458
+ N + + K K+ +K
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIIIIL 41
Score = 29.5 bits (66), Expect = 2.7
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+S+ E + + + K K+ +K +
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVII 38
Score = 28.4 bits (63), Expect = 5.8
Identities = 3/35 (8%), Positives = 10/35 (28%)
Query: 413 SMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKK 447
+ ++ ++ K K+ +K
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 34.3 bits (79), Expect = 0.088
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 399 IPIPAV--PVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
I +P M G + +K P E++ KK+KK+ + KKK +
Sbjct: 450 ITVPEKLKEFMPPGLQELIPFVKPAP-------IEQEPSKKQKKQHEGSKKKAAARDVTL 502
Query: 457 SFRFQ 461
R Q
Sbjct: 503 ENRLQ 507
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 33.1 bits (75), Expect = 0.089
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
V K +R++ + K+ KK K+ KK
Sbjct: 100 VRKAQREQAIRAAKEAKKAKQASKKTAMA 128
Score = 32.0 bits (72), Expect = 0.22
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
Q P + + + K+ KK K+ KK K
Sbjct: 95 NQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAK 131
Score = 30.4 bits (68), Expect = 0.76
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + K+ KK K+ KK K
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAKA 132
Score = 29.3 bits (65), Expect = 1.7
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+N++ + +K ++++ + K+ KK K+
Sbjct: 94 RNQKPEVRKAQREQAIRAAKEAKKAKQ 120
Score = 28.9 bits (64), Expect = 2.2
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
R K+ KK K+ KK K
Sbjct: 110 RAAKEAKKAKQASKKTAMAAAKAP 133
Score = 28.5 bits (63), Expect = 2.9
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
E KK K+ KK K K
Sbjct: 114 EAKKAKQASKKTAMAAAKAPTKAAP 138
Score = 28.1 bits (62), Expect = 3.5
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
K+ KK K+ KK K K
Sbjct: 111 AAKEAKKAKQASKKTAMAAAKAPTK 135
Score = 28.1 bits (62), Expect = 3.8
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ KK K+ KK K K
Sbjct: 111 AAKEAKKAKQASKKTAMAAAKAPTKAA 137
Score = 28.1 bits (62), Expect = 3.9
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ K+ KK K K K+K
Sbjct: 115 AKKAKQASKKTAMAAAKAPTKAAPKQK 141
Score = 27.7 bits (61), Expect = 5.1
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K +K + +K ++++ + K+ KK K
Sbjct: 92 AKRNQKPEVRKAQREQAIRAAKEAKKAK 119
Score = 27.7 bits (61), Expect = 5.1
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ ++ KK K+ KK K K
Sbjct: 110 RAAKEAKKAKQASKKTAMAAAKAPTKA 136
Score = 27.7 bits (61), Expect = 5.8
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ KK K K K+K K
Sbjct: 118 AKQASKKTAMAAAKAPTKAAPKQKIVK 144
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 32.8 bits (74), Expect = 0.091
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 406 VMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ G + P ++ E+ K K+KKK +K +K +K K
Sbjct: 82 ITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSA 131
Score = 31.2 bits (70), Expect = 0.38
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + K K+KKK +K +K +K K
Sbjct: 105 REEKLKANKEKKKAEKAARKAEKAKSAG 132
Score = 29.3 bits (65), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
+ K+KKK +K +K +K K
Sbjct: 110 KANKEKKKAEKAARKAEKAKSAGT 133
Score = 28.2 bits (62), Expect = 4.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K ++KKK +K +K +K K +
Sbjct: 109 LKANKEKKKAEKAARKAEKAKSAGTQSS 136
Score = 27.4 bits (60), Expect = 6.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
N+ KKK +K +K +K K + K
Sbjct: 110 KANKEKKKAEKAARKAEKAKSAGTQSSK 137
Score = 27.0 bits (59), Expect = 7.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
E+KK +K +K +K K + K
Sbjct: 112 NKEKKKAEKAARKAEKAKSAGTQSSKF 138
Score = 27.0 bits (59), Expect = 8.8
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K + +K +K +K K + K K+
Sbjct: 115 KKKAEKAARKAEKAKSAGTQSSKFSKQ 141
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 31.9 bits (72), Expect = 0.11
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 430 NERKKKKKKKKKKKKKKKKKKKKKK 454
+ERK+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 31.5 bits (71), Expect = 0.13
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKK 453
++K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 30.0 bits (67), Expect = 0.43
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
+ +K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 29.6 bits (66), Expect = 0.68
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKK 452
V + +RK+ KK K+K+ KKKK+ +
Sbjct: 79 VDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 29.2 bits (65), Expect = 0.94
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 422 PYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
P S+ + ++K+K+ KK K+K+ K R R
Sbjct: 64 PKVSNPEIYVGEVLYVDERKRKESPKKNKEKRMKKKKRLNR 104
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 32.4 bits (72), Expect = 0.12
Identities = 3/37 (8%), Positives = 8/37 (21%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
N + + K + K + +
Sbjct: 100 RAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 32.2 bits (73), Expect = 0.13
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKK----KKKKKKKKKKK 455
L + + V K R+++K+KK + KK K+ KK ++
Sbjct: 91 LVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132
Score = 31.1 bits (70), Expect = 0.32
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKK 454
+ ++K + KK K+ KK ++
Sbjct: 108 RKQKKNRDKKIFGTGKRLAKKVARRN 133
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 33.5 bits (76), Expect = 0.13
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
H+ R K +KK K++ + KK+
Sbjct: 243 AHEAIRADPAFKPTEKKFTKEQYAAESKKY 272
Score = 32.4 bits (73), Expect = 0.26
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
K +KK K++ + KK ++ K
Sbjct: 252 AFKPTEKKFTKEQYAAESKKYRQTK 276
Score = 31.6 bits (71), Expect = 0.44
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 416 SSLKQNPYSSHVHKNERKKKKKKKKKKKKKKK------KKKKKKKKWSFR 459
+++ +P K K++ + KK ++ K + K +
Sbjct: 245 EAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALA 294
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 33.3 bits (76), Expect = 0.15
Identities = 6/27 (22%), Positives = 21/27 (77%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+NE +KKK++++++ + + + K++++
Sbjct: 394 ENENMRKKKEEEERRARMEAQLKEQRE 420
Score = 31.4 bits (71), Expect = 0.64
Identities = 6/27 (22%), Positives = 22/27 (81%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+N RKKK++++++ + + + K++++++
Sbjct: 396 ENMRKKKEEEERRARMEAQLKEQRERE 422
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.16
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKW 456
RK +++++K+ ++ K +++W
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEW 112
Score = 32.4 bits (73), Expect = 0.20
Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 429 KNER--KKKKKKKKKKKKKKKKKKKKKKKW 456
+ +R + K +++ ++K KK ++W
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEW 123
Score = 30.1 bits (67), Expect = 1.2
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 13/47 (27%)
Query: 429 KNERKKKKKKKKKKKK-----------KKKKKKKKKKKW--SFRFQR 462
+ +++ ++K KK + +K K + +F Q
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149
Score = 29.0 bits (64), Expect = 2.4
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 429 KNERKKKKKKKKKKKKKK---------KKKKKKKKK 455
+ K +++ ++K KK ++ +K K
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Score = 28.2 bits (62), Expect = 4.6
Identities = 4/25 (16%), Positives = 14/25 (56%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
E +K +++++K+ ++ K +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVME 109
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 32.1 bits (72), Expect = 0.17
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K E +K ++ K+KK +KK+ +K
Sbjct: 102 HKKAEAEKAVRELKQKKANDIEKKRADRK 130
Score = 31.7 bits (71), Expect = 0.29
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + ++ K+KK +KK+ +K +
Sbjct: 97 NLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQG 133
Score = 29.7 bits (66), Expect = 1.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K R+ K+KK +KK+ +K + K
Sbjct: 108 EKAVRELKQKKANDIEKKRADRKLQGKD 135
Score = 29.7 bits (66), Expect = 1.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
E K+KK +KK+ +K + K K
Sbjct: 111 VRELKQKKANDIEKKRADRKLQGKDVK 137
Score = 29.0 bits (64), Expect = 2.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
++K +KK+ +K + K K K
Sbjct: 114 LKQKKANDIEKKRADRKLQGKDVKAAK 140
Score = 28.2 bits (62), Expect = 3.2
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 413 SMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
++ +S K+ V + ++KK +KK+ +K + K K
Sbjct: 97 NLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAA 139
Score = 28.2 bits (62), Expect = 3.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
KN KK + +K ++ K+KK
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDI 122
Score = 27.4 bits (60), Expect = 6.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + K KK + KK K+ K KK
Sbjct: 131 LQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 27.1 bits (59), Expect = 9.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKK 452
+ KK + KK K+ K KK
Sbjct: 132 QGKDVKAAKKAETKKTKQPVGAKGGKK 158
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 32.8 bits (74), Expect = 0.18
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
V KN K+ K KK +KK+ +K+W
Sbjct: 3 VGKN---KRLSKGKKGQKKRVVDPFTRKEW 29
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J
4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Length = 104
Score = 31.0 bits (69), Expect = 0.21
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKK 451
L ++ Y + ++ R+K KK KK KK KKK+K
Sbjct: 67 LFEDNYKDYEKRDSRRKAKKAASKKVKKTKKKEK 100
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 33.0 bits (76), Expect = 0.23
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 407 MGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKK 453
MG + ++ P S + KKK + K+K+K + KK
Sbjct: 1 MGKAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKK 47
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 30.9 bits (69), Expect = 0.25
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 422 PYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
P S + + +K+++ +K +++ + K +
Sbjct: 70 PESRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 29.4 bits (65), Expect = 0.74
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
S V K +K+++ +K +++ + K +
Sbjct: 72 SRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Length = 80
Score = 30.1 bits (67), Expect = 0.26
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 435 KKKKKKKKKKKKKKKKKKKKKWSFRF 460
K +KK K +K K + K+ ++ R+
Sbjct: 20 KVEKKDKPRKTPKGRSYKRILYNRRY 45
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 32.6 bits (75), Expect = 0.29
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 401 IPAV--PVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
IP V + G + PY + KN KK K K K KK K K
Sbjct: 427 IPEVLRKYIPGEP-------EFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 31.9 bits (72), Expect = 0.31
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 424 SSHVHKNER-KKKKKKKKKKKKKKKKKKKKKKKW 456
S H+ K K K +K + K+
Sbjct: 17 SHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKF 50
Score = 28.1 bits (62), Expect = 5.4
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 434 KKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
++ K K K +K + +F
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKF 50
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 32.2 bits (73), Expect = 0.32
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
K S + E + K KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.2 bits (73), Expect = 0.39
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K + + K KKK K K K+ K
Sbjct: 353 KRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 30.3 bits (68), Expect = 1.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+RK+ + K KKK K K K+
Sbjct: 351 SAKRKEPEPKGSTKKKAKTGAAGKFKR 377
Score = 29.9 bits (67), Expect = 2.0
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K K+K+ + K KKK K + +F+R
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKR 377
Score = 29.5 bits (66), Expect = 2.8
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKK 452
+ + S+ + E K KKK K K K+ K
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.1 bits (65), Expect = 3.6
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 421 NPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
S ++ + K KKK K K K+
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRG 378
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 31.4 bits (71), Expect = 0.32
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 421 NPY-SSHVH-------KNERKKKKKKKKKKKKKKKKKKKKKKK 455
NPY SS H K + K +++ +KKK +KK KK+K
Sbjct: 137 NPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQK 179
Score = 28.7 bits (64), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKK 454
V K E + +KKK +KK KK+K ++
Sbjct: 157 VPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 28.4 bits (63), Expect = 3.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKW 456
+ +++ +KKK +KK KK+K
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQKLMAR 183
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding,
nucleotidyltransferase, transcription, transferase,
zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Length = 104
Score = 30.6 bits (68), Expect = 0.32
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKK 451
L ++ Y + ++ R+K KK KK KK KKK+K
Sbjct: 67 LFEDNYKEYEKRDSRRKAKKAVSKKVKKTKKKEK 100
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 30.7 bits (69), Expect = 0.34
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
ER K+ + K K+ K
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYA 25
Score = 27.3 bits (60), Expect = 4.3
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
K+ + K K+ K K
Sbjct: 4 TKEAAAVAEGKSKQDASPKPYAVK 27
Score = 27.3 bits (60), Expect = 4.9
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
++ K+ + K K+ K ++ ++
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYAVKY 28
Score = 27.3 bits (60), Expect = 5.5
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKK 454
+ + K K+ K K
Sbjct: 5 KEAAAVAEGKSKQDASPKPYAVKY 28
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 31.8 bits (71), Expect = 0.34
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
+ +K+K ++ K+ ++++ + F Q
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQN 164
Score = 31.8 bits (71), Expect = 0.34
Identities = 5/36 (13%), Positives = 17/36 (47%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
+ + + +K+K ++ K+ ++++ RF
Sbjct: 127 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTP 162
Score = 29.5 bits (65), Expect = 1.6
Identities = 4/25 (16%), Positives = 15/25 (60%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
RK+K ++ K+ ++++ + + +
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQ 163
Score = 29.1 bits (64), Expect = 2.0
Identities = 4/29 (13%), Positives = 15/29 (51%)
Query: 434 KKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
+K+K ++ K+ ++++ + + Q
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQD 167
Score = 28.7 bits (63), Expect = 3.5
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+RK ++ K+ ++++ + + + K
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNK 165
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 31.2 bits (70), Expect = 0.35
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKK 453
+ R+ + + KK+ K
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKS 40
Score = 30.1 bits (67), Expect = 0.89
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
R ++ + + KK+ K
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFK 39
Score = 29.3 bits (65), Expect = 1.3
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K ++ + + KK+ K
Sbjct: 14 KLRVHRRNNRWAENNYKKRLLGTAFKS 40
Score = 27.4 bits (60), Expect = 6.9
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKK 450
H+ + + KK+ K
Sbjct: 18 HRRNNRWAENNYKKRLLGTAFKS 40
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 31.9 bits (72), Expect = 0.37
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 420 QNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
Q YS+ + N KK+ KK K KK K + ++K
Sbjct: 99 QMAYSNLLRANMDGLKKRDKKNKSKKSKPAQGGEQK 134
Score = 31.1 bits (70), Expect = 0.66
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
KK+ KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLI 136
Score = 30.7 bits (69), Expect = 0.72
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
+K+ KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLIS 137
Score = 28.4 bits (63), Expect = 4.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKK 453
+R KK K KK K + ++K
Sbjct: 115 KRDKKNKSKKSKPAQGGEQKLIS 137
Score = 28.0 bits (62), Expect = 6.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKK 454
+++ KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLIS 137
Score = 28.0 bits (62), Expect = 6.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKK 451
K ++K K KK K + ++K
Sbjct: 115 KRDKKNKSKKSKPAQGGEQKLIS 137
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 32.1 bits (73), Expect = 0.38
Identities = 21/135 (15%), Positives = 34/135 (25%), Gaps = 35/135 (25%)
Query: 142 YFFGMSSYIWWVILSFTWFLAAGL-----------------KWGNEA-------IASYSL 177
G S + ++ WF+ GL W + A
Sbjct: 36 ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFG 95
Query: 178 YFHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHNIHNLKYFVVFPLIIYLILGIIF 237
Y +A IP + V + + ++ +I L +
Sbjct: 96 YLQIAIGFIPMLYFVLGALSYILKW-----------PALNEDPITKTIAALIILWALALT 144
Query: 238 LFGGFISLFRIRNVI 252
FGG RI V
Sbjct: 145 QFGGTKYTARIAKVG 159
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 31.1 bits (70), Expect = 0.46
Identities = 3/41 (7%), Positives = 7/41 (17%)
Query: 422 PYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
H K+ K + + +
Sbjct: 45 SKKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTT 85
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 31.6 bits (71), Expect = 0.48
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 427 VHKNERK---KKKKKKKKKKKKKKKKKKKKKK 455
VH RK + K KK K K+ KK K
Sbjct: 250 VHAEIRKNPERVKSTKKNDKPKRDHKKFYPTK 281
Score = 29.3 bits (65), Expect = 3.0
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 416 SSLKQNPYSSHVHKNERKKKKKKKKKKKKK----KKKKKKKKKKWSFRFQ 461
+ +++NP K K K+ KK K ++K + K K Q
Sbjct: 252 AEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 30.4 bits (69), Expect = 0.51
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
K K ++ + +K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASAR 25
Score = 30.0 bits (68), Expect = 0.72
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
+ K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
Score = 30.0 bits (68), Expect = 0.84
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKW 456
K ++ + +K +K
Sbjct: 5 IPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.8 bits (65), Expect = 1.7
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 31.6 bits (71), Expect = 0.51
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
K K K K KK + KKKK KK
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKK 23
Score = 31.3 bits (70), Expect = 0.82
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
+ K K K KK + KKKK KK+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE 24
Score = 31.3 bits (70), Expect = 0.87
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ + + +K+ K++K K K++ +K + F
Sbjct: 132 SQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGF 166
Score = 30.1 bits (67), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKK 454
+ K K K KK + KKKK KK+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE 24
Score = 29.7 bits (66), Expect = 2.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKW 456
++ KK + KKKK KK++++K KW
Sbjct: 4 NKDKDKKVPEPDNKKKKPKKEEEQKWKW 31
Score = 29.7 bits (66), Expect = 2.6
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ + + + + + +K+ K++K K K++ +K +
Sbjct: 129 TQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEY 164
Score = 29.3 bits (65), Expect = 3.1
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
+ E +K+ K++K K K++ +K K+
Sbjct: 132 SQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 29.0 bits (64), Expect = 3.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ K K KK + KKKK KK+++ +++
Sbjct: 3 KNKDKDKKVPEPDNKKKKPKKEEEQKWKW 31
Score = 28.6 bits (63), Expect = 4.8
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
+ K K K K KK + KKK ++
Sbjct: 492 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ 523
Score = 28.2 bits (62), Expect = 6.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
+K++ KK + KKKK KK++++K K W
Sbjct: 4 NKDKDKKVPEPDNKKKKPKKEEEQKWKWW 32
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 30.0 bits (67), Expect = 0.58
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 430 NERKKKKKKKKKKKKKKKKKKKKKKK 455
E K K+K K K KKKK+ +KK
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 28.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 430 NERKKKKKKKKKKKKKKKKKKKKKKK 455
E K K+K K K KKKK+ +K
Sbjct: 97 TEEVKIVKRKMISKPKTDKKKKRSQK 122
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 30.6 bits (69), Expect = 0.58
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWSF 458
KK +K+ + F
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 30.2 bits (68), Expect = 0.64
Identities = 2/26 (7%), Positives = 7/26 (26%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKW 456
+K +K+ + +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_D 3u5g_E
Length = 261
Score = 28.8 bits (64), Expect = 0.60
Identities = 3/36 (8%), Positives = 5/36 (13%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
K + K + S
Sbjct: 9 LKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPL 44
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 30.3 bits (68), Expect = 0.62
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKK 454
ERK + KK + KK K KKK
Sbjct: 115 ERKNRAKKIRGVKKTKAGDAGKKK 138
Score = 29.6 bits (66), Expect = 1.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
++ R K +K +K+ K++K + KK
Sbjct: 95 YRLIRNGLATKVEKSRKQMKERKNRAKK 122
Score = 28.0 bits (62), Expect = 3.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKK 450
KN KK + KK K KKK
Sbjct: 116 RKNRAKKIRGVKKTKAGDAGKKK 138
Score = 27.6 bits (61), Expect = 5.0
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 431 ERKKKKKKKKKKK--KKKKKKKKKKKK 455
+ K++K + KK + KK K KKK
Sbjct: 112 QMKERKNRAKKIRGVKKTKAGDAGKKK 138
Score = 27.6 bits (61), Expect = 5.6
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 429 KNERKKKKKKKKKKKK----KKKKKKKKKKK 455
+ RK+ K++K + KK KK K KK
Sbjct: 107 EKSRKQMKERKNRAKKIRGVKKTKAGDAGKK 137
Score = 27.2 bits (60), Expect = 5.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKK 453
S K + + KK + KK K KKK
Sbjct: 109 SRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 29.2 bits (66), Expect = 0.64
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWS--FRF 460
++ KK+ +KKK K+ S F
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFF 31
Score = 26.5 bits (59), Expect = 6.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 429 KNERKKKKKKKKKKKKKKKKKK 450
R+ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 30.4 bits (68), Expect = 0.84
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
Y + E K+K+K K +KKK+ + +K+
Sbjct: 149 YQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQ 180
Score = 28.1 bits (62), Expect = 4.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 430 NERKKKKKKKKKKKKKKKKKKKKKKK 455
+RK+K K +KKK+ + +K+ +K
Sbjct: 158 EKRKEKAKIHYRKKKQLMRLRKQAEK 183
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 30.3 bits (68), Expect = 0.85
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
Y+ + + E K+K+K K ++K+ K + K
Sbjct: 154 YADTIRELEEKRKEKAKVSYDRRKQLAKLRVK 185
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 30.4 bits (68), Expect = 0.92
Identities = 4/36 (11%), Positives = 17/36 (47%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQ 461
K + +++K ++ + ++ K + + + + R
Sbjct: 143 IQAKADAQREKALNEEAEARRLKNRAARDRRAQRVA 178
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 30.3 bits (68), Expect = 1.0
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
Y V K E K+K + KK+ KK
Sbjct: 149 YEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASA 181
Score = 28.8 bits (64), Expect = 2.9
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ +RK + KK+ KK
Sbjct: 156 LEAKRKVSSAEYYAKKRAFTKKVASANA 183
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 29.6 bits (66), Expect = 1.0
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKK 452
RK ++ K+ + +
Sbjct: 16 ARHRKDQRWADNDFNKRLLGSRWR 39
Score = 29.2 bits (65), Expect = 1.6
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
RK + +K ++ K+
Sbjct: 13 RKLARHRKDQRWADNDFNKRLLGS 36
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 29.9 bits (67), Expect = 1.0
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
E+++ K +KK + +++ +
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRI 176
Score = 29.5 bits (66), Expect = 1.6
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 9/44 (20%)
Query: 421 NPY-SSHVH--------KNERKKKKKKKKKKKKKKKKKKKKKKK 455
N Y SS H + K +KK + +++ + +K
Sbjct: 137 NKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSRQRGRIAAQK 180
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 30.9 bits (70), Expect = 1.1
Identities = 17/152 (11%), Positives = 47/152 (30%), Gaps = 15/152 (9%)
Query: 192 VSVIIMSAVDGDTIAGICYVGNHNIHNLKYFVVFPLIIYLILGIIFLFGGFISLFRIRNV 251
I+ + + N + ++ ++Y ILG + G + IR V
Sbjct: 203 SGAIVYELLYTTPLVEAFEGTNFDASDVSRTQ---TLLYAILGAL---MGVLGALFIRCV 256
Query: 252 IKNQGGISNRTKADKLEKLMIRIGIFSVLSTLPASIVIGCLIYESYVYNEYVESIVCPCS 311
R + +G+ ++ AS + + + +
Sbjct: 257 RSIYEL---RMRHYPGTNRYFLVGVVALF----ASALQYPFRLFALDPRATINDLFKAVP 309
Query: 312 EKLDKDY-FKPLHVVLLLKYFMALAVGLTSGV 342
+ + L ++ ++K+ + A+ + +
Sbjct: 310 LYQTDHFGWTELILMPIIKFILV-ALSIGLPL 340
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 30.0 bits (67), Expect = 1.1
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQ 461
H K ++ +KK + + ++ K K+ +K+ R Q
Sbjct: 143 HKLKADKARKKLLADQAEARRSKTKEARKRREERLQ 178
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 29.6 bits (66), Expect = 1.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
+RKK ++K K ++ K+K K K++
Sbjct: 114 DRKKILERKAKSRQVGKEKGKYKEE 138
Score = 27.7 bits (61), Expect = 5.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKK 454
K+ +K ++K K ++ K+K K K++
Sbjct: 113 KDRKKILERKAKSRQVGKEKGKYKEE 138
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 30.3 bits (67), Expect = 1.4
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 430 NERKKKKKKKKKKKKKKKKKKKKKKKWSF 458
+ +K++ K K+ + +K SF
Sbjct: 284 TVDLEMRKQRNKTTKQVRTIEKITPIESF 312
>2kkm_A Translation machinery-associated protein 16; nucleus, structural
genomics, PSI-2, protein structure initiative; NMR
{Saccharomyces cerevisiae}
Length = 144
Score = 29.1 bits (65), Expect = 1.5
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKWSFRFQ 461
R+ K KKK + K+ + + K+ Q
Sbjct: 5 REDKIAAKKKLHQDKRVHELARVKF---MQ 31
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 30.0 bits (67), Expect = 1.5
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ +++KK + K++KK K+K+ + +R+
Sbjct: 108 YQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRY 142
Score = 28.8 bits (64), Expect = 3.8
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+++ +++KK + K++KK K+K+ + +
Sbjct: 105 EPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPY 140
Score = 27.7 bits (61), Expect = 8.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
Y H+ + E+K + K++KK K+K+ + +
Sbjct: 108 YQWHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 28.8 bits (64), Expect = 1.6
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K KK K+ +++ K +K K +
Sbjct: 58 KTALKKSWKRYEQEMLKNEKVAAKMLE 84
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 28.1 bits (63), Expect = 1.6
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWS--FRF 460
+ ++ +K KK K+ S F
Sbjct: 4 ASDRTGVRRPRKAKKDPNAPKRALSSYMFF 33
Score = 27.7 bits (62), Expect = 2.4
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
+ ++ +K KK K+
Sbjct: 3 GASDRTGVRRPRKAKKDPNAPKR 25
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 29.5 bits (67), Expect = 1.8
Identities = 3/40 (7%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 416 SSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K+ + + + + + +K+ + K+ +
Sbjct: 160 PKPKREAF--------LEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 7.3
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + + + + +K+ + K+
Sbjct: 158 RLPKPKREAFLEANRAELVRFQKEARALLKELS 190
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein,
lipids, photore haloarchaea, 7-transmembrane,
serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium
salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A*
2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A*
2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A*
1p8i_A* 1p8u_A* 3han_A* ...
Length = 262
Score = 29.7 bits (66), Expect = 1.9
Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 14/202 (6%)
Query: 59 WIFVMSALCCISTLMTLTTFLIDTERFKYPE-RPIVFLSG--CYFMVSIGYLIRVSVGHE 115
W+ + +AL + TL FL+ P+ + ++ ++ + + G
Sbjct: 25 WLALGTALMGLGTLY----FLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT 80
Query: 116 EVACEDQ-----MVRYGASGPTPCTLVFLLVYFFGMSSYIWWVILSFTWFLAAGLKWGNE 170
V + RY T L+ L ++ + G
Sbjct: 81 MVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGAL 140
Query: 171 AIASYSLYFHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHNIHNLKYFVVFPLIIY 230
+ A + + V+ + L+ V Y
Sbjct: 141 TKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKV--LRNVTVVLWSAY 198
Query: 231 LILGIIFLFGGFISLFRIRNVI 252
++ +I G I I ++
Sbjct: 199 PVVWLIGSEGAGIVPLNIETLL 220
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U
3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U
3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U
3ora_U ...
Length = 71
Score = 27.5 bits (61), Expect = 1.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWSFRFQR 462
K ++K+ K K+ KK + + R R
Sbjct: 40 KPTTERKRAKASAVKRHAKKLARENARRTR 69
Score = 27.1 bits (60), Expect = 2.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
ERK+ K K+ KK ++ ++
Sbjct: 44 ERKRAKASAVKRHAKKLARENARRT 68
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 29.4 bits (65), Expect = 2.0
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
R K+ K K + ++ +++ + +
Sbjct: 193 RLKRIKGKIEAREAEEEGGRPNPQ 216
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.5 bits (66), Expect = 2.0
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ +K++KK+ ++KK+ + +++K + ++F
Sbjct: 98 FDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKF 132
Score = 28.7 bits (64), Expect = 3.4
Identities = 6/36 (16%), Positives = 22/36 (61%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ + + +K++KK+ ++KK+ + +++K+ +
Sbjct: 95 TKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDY 130
Score = 27.9 bits (62), Expect = 6.2
Identities = 6/32 (18%), Positives = 19/32 (59%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
+ + E+KK+ ++KK+ + +++K ++
Sbjct: 98 FDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 62
Score = 27.3 bits (60), Expect = 2.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ K + K K+ KKKK + + K+ +++ RF
Sbjct: 9 ARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRF 44
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 29.1 bits (65), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
+ + K E K++ + K KK K+ +KK
Sbjct: 148 KQTLIEKLEEKRRARAKTYHDKKVKQADARKK 179
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 29.4 bits (65), Expect = 2.2
Identities = 3/28 (10%), Positives = 14/28 (50%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+++ +K + + ++K+ K ++
Sbjct: 128 YRHRAANLEKCMSELWRMERKRDKNARE 155
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA
interaction, solution structure, DNA binding protein;
NMR {Homo sapiens} SCOP: a.140.2.1
Length = 151
Score = 28.9 bits (64), Expect = 2.3
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 407 MGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKK 450
MG H S P SH+ E K K+K + K+ K
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASPEGKVTKRKHDNEGSGSKRPK 44
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 160
Score = 28.8 bits (64), Expect = 2.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
+ N H+ ++ + K+ K+ +KKK+ K+K W
Sbjct: 88 RINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTW 125
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 28.5 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 430 NERKKKKKKKKKKKKKKKKKKKKKKK 455
E+K KK K++ + KK +KK KK
Sbjct: 96 EEQKIVKKVVKEQTEAAKKSEKKAKK 121
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 27.7 bits (61), Expect = 2.5
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 438 KKKKKKKKKKKKKKKKKKWSFRFQ 461
+K KKK +F
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQFT 25
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 27.9 bits (62), Expect = 2.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKK 446
YSS++ K ++K+ KK+ ++ KKK
Sbjct: 5 YSSYLAKADQKRGKKQTARETKKK 28
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 28.0 bits (62), Expect = 2.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKK 446
Y + ERK K++ +++KKKK
Sbjct: 5 YIQKQAQTERKSGKRQTEREKKKK 28
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 29.0 bits (65), Expect = 2.6
Identities = 0/32 (0%), Positives = 2/32 (6%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKK 454
++
Sbjct: 143 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 174
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 28.7 bits (65), Expect = 2.6
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 416 SSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSF 458
+ + + E+K ++K ++ + ++K+K F
Sbjct: 148 TDQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGF 190
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 28.8 bits (64), Expect = 2.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
E K +K+ K KK K KK K
Sbjct: 154 EVAAKVRKEAPKDAAKKVPKTKKGK 178
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 28.7 bits (65), Expect = 2.7
Identities = 2/40 (5%), Positives = 10/40 (25%), Gaps = 10/40 (25%)
Query: 416 SSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + + + + K + + K +
Sbjct: 157 TQVDKK----------KVRPKLNELIRDYKATHSLEHHHH 186
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Length = 142
Score = 28.5 bits (64), Expect = 2.7
Identities = 5/45 (11%), Positives = 10/45 (22%), Gaps = 8/45 (17%)
Query: 413 SMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
+ P KK + K + +K +
Sbjct: 44 RFARGMTSKPAGFM--------KKLRAAKLAAPENEKPAPVRTHM 80
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 28.1 bits (62), Expect = 2.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKW 456
KN+ K K +++ K + K++ K
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKE 30
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 27.3 bits (61), Expect = 2.8
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 436 KKKKKKKKKKKKKKKKKKKKWSF 458
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKA 24
Score = 27.3 bits (61), Expect = 3.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
KN + KK+ +++ +K K K +
Sbjct: 4 KNAKPKKEAQRRPSRKAKVKATLGEFD 30
Score = 27.3 bits (61), Expect = 3.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 433 KKKKKKKKKKKKKKKKKKKK 452
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
Score = 27.3 bits (61), Expect = 3.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 434 KKKKKKKKKKKKKKKKKKKK 453
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
Score = 27.3 bits (61), Expect = 3.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 435 KKKKKKKKKKKKKKKKKKKK 454
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
Score = 26.9 bits (60), Expect = 4.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 432 RKKKKKKKKKKKKKKKKKKK 451
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
Score = 26.9 bits (60), Expect = 4.5
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ K KK+ +++ +K K K +
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGE 28
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 28.9 bits (65), Expect = 3.6
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 187 PTVKSVSVIIMSAVDGDTIAGICYVGNHNIHNLKYFVVFP---LIIYLILGIIFLFGGFI 243
T+ S+ + + + + I + + ++ P L +YLILGII G
Sbjct: 210 YTLISIKAVFIGVIMSTIMYRI-FNHEVALIDVGKLSDAPLNTLWLYLILGII---FGIF 265
Query: 244 SLFRIRNVIKNQGGISNRTKADKLEKLMIRIGIFSVLSTLPASIVIGCLIY 294
+ V+ Q D L ++ VL + G L +
Sbjct: 266 GPIFNKWVLGMQ---------DLLHRVHGGNITKWVLMGGAIGGLCGLLGF 307
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 28.0 bits (62), Expect = 3.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
KN+ K K +++ K + + +K++ K
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFK 28
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 28.4 bits (64), Expect = 3.9
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 432 RKKKKKKKKKKKKKKKKKKKK 452
R ++ K+K +++ +K+K+
Sbjct: 171 RLRRDSKEKNERRLAYQKRKE 191
Score = 27.3 bits (61), Expect = 8.1
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
R+ + ++ K+K +++ +K+K+
Sbjct: 168 RQVRLRRDSKEKNERRLAYQKRKE 191
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex,
extended structure, Zn-finger, minor groove helix,
helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP:
d.285.1.1 PDB: 1t2t_A
Length = 116
Score = 27.5 bits (60), Expect = 4.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 419 KQNPYSSHVHKNERKKKKKKKKKKKKKKKKKK 450
+ N + +H H + K K +K K KK KK
Sbjct: 44 ENNSFFNHKHSDITKSKISEKMKGKKPSNIKK 75
>2nll_B Protein (thyroid hormone receptor); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, zinc-
finger, multigene family; HET: DNA 5IU; 1.90A {Homo
sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Length = 103
Score = 27.4 bits (61), Expect = 4.2
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
++ K+ K+K ++ ++K+++++ +K
Sbjct: 77 LDDSKRLAKRKLIEENREKRRREELEK 103
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 28.5 bits (63), Expect = 4.2
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 435 KKKKKKKKKKKKKKKKKKKKKWSF 458
K K+ + KKK ++ +
Sbjct: 156 NPDLIKDKRSPEGKKKYRQGMKTI 179
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 28.7 bits (64), Expect = 4.5
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKK 454
E+ ++ K K+K+ +K
Sbjct: 47 EKAFAAREIKSLASKRKEDLQKIT 70
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_W
Length = 130
Score = 27.6 bits (61), Expect = 4.5
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 438 KKKKKKKKKKKKKKKKKKWSF 458
+ K KKK SF
Sbjct: 3 RGVAVAAKGGAGGKKKGSVSF 23
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 28.3 bits (64), Expect = 4.5
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 416 SSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
S LK+ + +K+ K+ +KK+K K +
Sbjct: 152 SILKRK----------KFEKELKELQKKQKHKLEHHHHHH 181
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport
protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas
pharaonis} PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A*
2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Length = 239
Score = 28.1 bits (62), Expect = 4.8
Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 16/202 (7%)
Query: 57 SMWIFVMSALCCISTLMTLTTFLIDTERFKYPERPIVFLSGCYFMVS-IGYL-IRVSVGH 114
+ ++ + + TL F ER ++ + Y+ + + VG
Sbjct: 5 TTLFWLGAIGMLVGTL----AFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGW 60
Query: 115 EEVACEDQM-VRY-GASGPTPCTLVFLLVYFFGMSSYIWWVILSFTWFLAAGLKWGNEAI 172
VA RY TP + FL + S VI T + AG
Sbjct: 61 VPVAERTVFAPRYIDWILTTPLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPG 120
Query: 173 ASYSLYF--HLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHNIHNLKYFVVFPLIIY 230
F A+L V + SA + Y L+ V IY
Sbjct: 121 IERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLY------VRLRNLTVILWAIY 174
Query: 231 LILGIIFLFGGFISLFRIRNVI 252
+ ++ G + + +
Sbjct: 175 PFIWLLGPPGVALLTPTVDVAL 196
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 27.9 bits (62), Expect = 4.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
K KK+ K + K K K KK
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKK 26
Score = 27.1 bits (60), Expect = 8.7
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKW-SFRFQR 462
K E K K K KK K KKKK S F+R
Sbjct: 14 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRR 48
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 28.1 bits (62), Expect = 5.1
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 412 HSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKK--------KKKKKKKKKKKWSFRFQ 461
H K N Y + E K K K ++ K + K + + Q
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASRAKRNEKAQ 178
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Y
Length = 150
Score = 27.8 bits (61), Expect = 5.1
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
+RK +K + K K K +
Sbjct: 113 DRKAILDRKASGRAADKAKGKFTAE 137
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 27.0 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 9/37 (24%)
Query: 427 VHKNERKKK---------KKKKKKKKKKKKKKKKKKK 454
V K K K + +++K+++KK KKKKKK
Sbjct: 68 VEKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 26.7 bits (59), Expect = 6.7
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 437 KKKKKKKKKKKKKKKKKKK 455
+ +++K+++KK KKKKKK
Sbjct: 86 AEIREQKREQKKDKKKKKK 104
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 26.7 bits (58), Expect = 5.5
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 430 NERKKKKKKKKKKKKKKKKK 449
+ K+ ++ K K++K++K
Sbjct: 71 KDCKEIANQRSKSKRQKRRK 90
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 28.1 bits (63), Expect = 5.8
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
H + + + K KKKK
Sbjct: 5 HHHHHHSSGLVPRGSHMQPVGKPPKKKKSKRIL 37
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 27.3 bits (61), Expect = 5.9
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 434 KKKKKKKKKKKKKKKKKKKKKKW 456
K K + + K + + +
Sbjct: 90 KAKNEFTQAYAKLMNQYRGIYSF 112
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin,
seven-transmembrane, light-gated cation membrane
protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Length = 333
Score = 28.3 bits (62), Expect = 6.0
Identities = 21/213 (9%), Positives = 55/213 (25%), Gaps = 18/213 (8%)
Query: 49 SQPEREFASMWIFVMSALCCISTLMTLTTFLIDTERFKYPERPIVFLSGC------YFMV 102
+ E+ A++ ++ AL + + + + E + + +
Sbjct: 61 TNAEKLAANILQWITFALSALCLMFYG--YQTWKSTCGWEEIYVATIEMIKFIIEYFHEF 118
Query: 103 SIGYLIRVSVGHEEVACEDQMVRYGA---SGPTPCTLVFLLVYFFGMSSYIWWVILSFTW 159
+I S G++ V +RY + P + L + +L
Sbjct: 119 DEPAVIYSSNGNKTV-----WLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDI 173
Query: 160 FLAAGLKWGNEAIASYSLYFHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHNIHNL 219
+ + F L + + ++ + +
Sbjct: 174 GTIVWGTTAALSKGYVRVIFFLMGL-CYGIYTFFNAAKVYIEAYHTVPKGRCRQV-VTGM 231
Query: 220 KYFVVFPLIIYLILGIIFLFGGFISLFRIRNVI 252
+ ++ IL I+ G + V
Sbjct: 232 AWLFFVSWGMFPILFILGPEGFGVLSVYGSTVG 264
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 28.1 bits (63), Expect = 6.9
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKK 451
S H H + + +K KK +
Sbjct: 4 SHHHHHHSSGLVPRGSHMQKPIKKDPNR 31
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural
genomics, PSI-biology, NEW YORK consortium on membrane
PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos
taurus} PDB: 4ezd_A*
Length = 384
Score = 28.1 bits (62), Expect = 7.2
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 16/126 (12%)
Query: 135 TLVFLLV-YFFGMSSYIWWVILS------FTWFLAAGLK--WGNEAIASYSLYFHLAAWL 185
TLV +L+ + +Y WW++ ++ L + ++L F++A +
Sbjct: 122 TLVGILMAIYSDKGNYFWWLLFPVSAMSMTCPVFSSALNSVLSKWDLPVFTLPFNMALSM 181
Query: 186 IPTVKSVSVIIMSAVDGDTIAGICYVGNHNIHNLKYFVVFP-------LIIYLILGIIFL 238
+ + + + V ++ L+ P G IFL
Sbjct: 182 YLSATGHYNPFFPSTLITPVTSVPNVTWPDLSALQLLKSLPVGVGQIYGCDNPWTGGIFL 241
Query: 239 FGGFIS 244
+S
Sbjct: 242 GAILLS 247
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET:
RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Length = 261
Score = 27.7 bits (61), Expect = 7.2
Identities = 28/210 (13%), Positives = 60/210 (28%), Gaps = 23/210 (10%)
Query: 55 FASMWIFVMSALCCISTLMTLTTFLIDTERFKYPERPIVFLSG--CYFMVSIGYLIRVSV 112
S+ ++ A I L F + + + ++ + + +
Sbjct: 3 LESLLHWIYVAGMTIGAL----HFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQ 58
Query: 113 GHEEVACED-QMVRYGA---SGPTPCTLVFLLVYFFGMSSY--IWWVILSFTWFLAAGLK 166
G E A + RY + P + F + I +++ + + +GL
Sbjct: 59 GKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGL- 117
Query: 167 WGNEAIASYSLY----FHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHNIHNLKYF 222
+ + + Y + A+LI + + + Y L +
Sbjct: 118 IADLSERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLY------DKLVTY 171
Query: 223 VVFPLIIYLILGIIFLFGGFISLFRIRNVI 252
I Y I+ II G I +
Sbjct: 172 FTVLWIGYPIVWIIGPSGFGWINQTIDTFL 201
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 27.5 bits (61), Expect = 8.6
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKW 456
K K + +K+KKW
Sbjct: 110 ENNSSDKIGKILGDGVGQNEKRKKW 134
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 27.2 bits (60), Expect = 8.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
K+K + K++K+++K +K K+
Sbjct: 147 KEKYPRPPKRRKEERKGRKPWKE 169
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.8 bits (62), Expect = 9.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKK 453
+ +K +KKKKKK K +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENA 388
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma
membrane; HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 27.7 bits (60), Expect = 10.0
Identities = 20/188 (10%), Positives = 53/188 (28%), Gaps = 20/188 (10%)
Query: 69 ISTLMTLTTFLIDTERFKYPERPIVFLSGCYFMVSIGYLIRVSVGHEEVACEDQMVRYGA 128
++L+ + LI +K F++ ++ Y R G+
Sbjct: 110 FASLIVVPIILI-AREYKLTT--YGFIAALLGSIANSYYNRTMSGY---------YDTDM 157
Query: 129 SGPTPCTLVFLLVYFFGMSSYIWWVILS-FTWFLAAGLKWGNEAIASYSLYFHLAAWLIP 187
L+ L ++ I+ ++LS + + ++ + L+
Sbjct: 158 LVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIGLFGLYTLVF 217
Query: 188 TVKSVSVIIMSAVDGDTIAGICYVGNHN-------IHNLKYFVVFPLIIYLILGIIFLFG 240
K + A+ ++ + + I K + +I+ ++ I
Sbjct: 218 HRKEKIFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISISIL 277
Query: 241 GFISLFRI 248
Sbjct: 278 HLSGGLDP 285
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.441
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,266,593
Number of extensions: 444991
Number of successful extensions: 5665
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4520
Number of HSP's successfully gapped: 410
Length of query: 463
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 366
Effective length of database: 3,993,456
Effective search space: 1461604896
Effective search space used: 1461604896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.9 bits)