RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14918
(463 letters)
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 35.3 bits (81), Expect = 0.013
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K +K+++ ++K ++ K K+K +K++
Sbjct: 303 AVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.8 bits (64), Expect = 1.3
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K+ +K+++ ++K ++ K K+K
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKA 327
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 31.8 bits (72), Expect = 0.13
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
S+ + K K+ + + K +K++ ++ SF F F
Sbjct: 155 STEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESF-FTWF 193
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 29.8 bits (67), Expect = 0.14
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 397 PNIPIPAVPVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKK-----KKKKKKKKKKKK 451
A+ + G S +Q Y ++++ + + KKKK+
Sbjct: 26 TLKESAAINQILGRRWHALSREEQAKY---YELARKERQLHMQLYPGWSARDNYGKKKKR 82
Query: 452 KKKK 455
K++K
Sbjct: 83 KREK 86
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 31.1 bits (70), Expect = 0.17
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 358 NRLFGFNNNTTRVLINTNKHRVLKQHDYLPPLAHGMPPPPNIPIPAVPVMGGGAHSMTSS 417
+R N + K + P A P P+ +
Sbjct: 62 SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTE-ERRKDLTKIVRGE 120
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQ 461
+Q + +N R+ K K K K+ + ++ Q
Sbjct: 121 AEQ---ARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQ 161
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 31.6 bits (70), Expect = 0.19
Identities = 26/248 (10%), Positives = 55/248 (22%), Gaps = 7/248 (2%)
Query: 37 NNCAYPCQGIFFSQPEREFASMWIFVMSALCCISTLMTLTTFLIDTERFKYPERPIVFLS 96
G FS E A + T ++ E + L
Sbjct: 119 VRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLV 178
Query: 97 GCYFMVSIGYLIRVSVGHEEVACEDQMVRYGASG--PTPCTLVFLLVYFFGMSSYIWWVI 154
+ + + G + Q + G P + + + W +
Sbjct: 179 DTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL 238
Query: 155 LSFTWFLAAGLKWGNEAIASYSLYFHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNH 214
G + A +LY+ L L +
Sbjct: 239 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCW-----QRHQKNVEYLWE 293
Query: 215 NIHNLKYFVVFPLIIYLILGIIFLFGGFISLFRIRNVIKNQGGISNRTKADKLEKLMIRI 274
+ ++ + L + + + N+ I +L + R+
Sbjct: 294 RLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRV 353
Query: 275 GIFSVLST 282
G+ S
Sbjct: 354 GLMGFNSR 361
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 29.0 bits (65), Expect = 0.24
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 430 NERKKKKKKKKKKKKKKKKKKKKKKK 455
N +K + K +K K K + +
Sbjct: 13 NAQKSAMARAKNLEKAKAAGKGSQLE 38
Score = 27.1 bits (60), Expect = 1.1
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
R K +K K K + + KK
Sbjct: 20 ARAKNLEKAKAAGKGSQLEANKKAM 44
Score = 27.1 bits (60), Expect = 1.5
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKK 453
+ +K K K + + KK
Sbjct: 20 ARAKNLEKAKAAGKGSQLEANKKAM 44
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 30.2 bits (68), Expect = 0.27
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
KN+ K K +++ K + + +K++ K
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFK 28
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 28.7 bits (64), Expect = 0.35
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWS 457
++ KK+ +KKK K+ S
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALS 26
Score = 27.9 bits (62), Expect = 0.79
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 432 RKKKKKKKKKKKKKKKKKK 450
R+ KK+ +KKK K+
Sbjct: 5 REPKKRTTRKKKDPNAPKR 23
Score = 26.4 bits (58), Expect = 2.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 431 ERKKKKKKKKKKKKKKKKK 449
KK+ +KKK K+
Sbjct: 5 REPKKRTTRKKKDPNAPKR 23
Score = 25.2 bits (55), Expect = 7.6
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 429 KNERKKKKKKKKKKKKKKK 447
+ +K+ +KKK K+
Sbjct: 5 REPKKRTTRKKKDPNAPKR 23
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 28.2 bits (63), Expect = 0.38
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + K K K K K KK + KK
Sbjct: 22 RRDLKSAKADAKVMKDAKTKKVVESKK 48
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 28.6 bits (64), Expect = 0.42
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKK 455
K+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.7 bits (59), Expect = 2.2
Identities = 2/23 (8%), Positives = 9/23 (39%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKK 453
+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.7 bits (59), Expect = 2.5
Identities = 2/22 (9%), Positives = 9/22 (40%)
Query: 429 KNERKKKKKKKKKKKKKKKKKK 450
+ + + K+ +K++
Sbjct: 80 EVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.7 bits (59), Expect = 2.5
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 435 KKKKKKKKKKKKKKKKKKKKKW 456
K+ + + K+ +K
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKR 100
Score = 25.9 bits (57), Expect = 4.7
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 427 VHKNERKKKKKKKKKKKKKKK 447
V + K+ +K++
Sbjct: 81 VVPEGYEMKRVGDYYVFEKRE 101
Score = 25.9 bits (57), Expect = 4.9
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKK 451
K + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 8.1
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 426 HVHKNERKKKKKKKKKKKKK 445
E K+ +K++
Sbjct: 82 VPEGYEMKRVGDYYVFEKRE 101
Score = 24.8 bits (54), Expect = 9.7
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 426 HVHKNERKKKKKKKKKKKKKK 446
V + K+ +K++
Sbjct: 81 VVPEGYEMKRVGDYYVFEKRE 101
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.1 bits (68), Expect = 0.44
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ +K++KK+ ++KK+ + +++K + ++F
Sbjct: 98 FDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKF 132
Score = 29.7 bits (67), Expect = 0.51
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + + +K++KK+ ++KK+ + +++K
Sbjct: 95 TKMFDYFQLQKEQKKQLTSQEKKQIRLEREK 125
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp.
[TaxId: 2243]}
Length = 236
Score = 30.0 bits (67), Expect = 0.49
Identities = 25/156 (16%), Positives = 45/156 (28%), Gaps = 4/156 (2%)
Query: 99 YFMVSIGYLIRVSVGHEEVACEDQMVRYGASGPTPCTLVFLLVYFFGMSSYIWWVILSFT 158
M L V VG E + + RY T L+ L + ++
Sbjct: 64 LSMFFGIGLTEVQVGSEML--DIYYARYADWLFTTPLLLLDLALLAKVDRVSIGTLVGVD 121
Query: 159 WFLAAGLKWGNEAIASYSLYFHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHNIHN 218
+ G + + Y I + V + +++ V + +
Sbjct: 122 ALMIVTGLVGALSHTPLARYTWWLFSTICMIV-VLYFLATSLRAAAKERGPEVAST-FNT 179
Query: 219 LKYFVVFPLIIYLILGIIFLFGGFISLFRIRNVIKN 254
L V+ Y IL II G + I ++
Sbjct: 180 LTALVLVLWTAYPILWIIGTEGAGVVGLGIETLLFM 215
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 29.7 bits (67), Expect = 0.57
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
RK+ K++K K K++ +K K+ +
Sbjct: 112 QTEARKQMSKEEKLKIKEENEKLLKEYGF 140
Score = 29.7 bits (67), Expect = 0.63
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKK 455
K + + +K+ K++K K K++ +K K
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLK 136
Score = 29.7 bits (67), Expect = 0.65
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ + + +K+ K++K K K++ +K + F
Sbjct: 106 SQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGF 140
Score = 28.9 bits (65), Expect = 1.1
Identities = 6/31 (19%), Positives = 19/31 (61%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + + + + + +K+ K++K K K++ +K
Sbjct: 103 TQMSQYFKAQTEARKQMSKEEKLKIKEENEK 133
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 30.0 bits (67), Expect = 0.57
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 418 LKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + ++ E++ K K + + KK +KK +
Sbjct: 113 SRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQG 150
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 28.6 bits (64), Expect = 0.59
Identities = 7/53 (13%), Positives = 18/53 (33%)
Query: 401 IPAVPVMGGGAHSMTSSLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKK 453
V ++ G + + +K K K +++K +K++
Sbjct: 35 FAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQ 87
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 28.9 bits (65), Expect = 0.74
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ R ++++KK+ +K +K K
Sbjct: 55 KGNSRGRARERQKKRAYGHQKGAGSRKGKA 84
Score = 25.8 bits (57), Expect = 6.6
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 425 SHVHKNERKKKKKKKKKKKKKKKKKKK-----KKKKWSFR 459
S ER+KK+ +K +K K K+ W R
Sbjct: 58 SRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESR 97
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 28.0 bits (62), Expect = 0.80
Identities = 3/30 (10%), Positives = 15/30 (50%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKWS 457
++ E + + ++++++ ++K S
Sbjct: 74 YEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 29.0 bits (64), Expect = 0.81
Identities = 3/27 (11%), Positives = 13/27 (48%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKK 449
+ + K +R+ + + + + +K+
Sbjct: 155 FFERLPKPKREAFLEANRAELVRFQKE 181
Score = 27.8 bits (61), Expect = 1.8
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
ER K K++ + + + + +K+
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKE 181
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 28.3 bits (63), Expect = 0.93
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKK 450
N R +K +K KKK +K
Sbjct: 101 RTRTNARTRKGPRKTVAGKKKAPRK 125
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 29.2 bits (65), Expect = 1.0
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKKWSF 458
+ +K++ K K+ + +K SF
Sbjct: 217 DLEMRKQRNKTTKQVRTIEKITPIESF 243
Score = 27.7 bits (61), Expect = 3.5
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 424 SSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + + +K++ K K+ +
Sbjct: 202 GCEISWKDNAHNVTVDLEMRKQRNKTTKQVRT 233
Score = 27.3 bits (60), Expect = 4.1
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKKKWSFRFQRF 463
+ +K++ K K+ + +K F F
Sbjct: 217 DLEMRKQRNKTTKQVRTIEKITPIESFFNFF 247
Score = 26.9 bits (59), Expect = 4.9
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKKWSFRF 460
+ + +K++ K K+ + +K + F F
Sbjct: 215 TVDLEMRKQRNKTTKQVRTIEKITPIESFFNF 246
Score = 26.5 bits (58), Expect = 7.6
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKKWSFR 459
K + +K++ K K+
Sbjct: 206 SWKDNAHNVTVDLEMRKQRNKTTKQVRTI 234
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 27.0 bits (60), Expect = 1.4
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 438 KKKKKKKKKKKKKKKKKKWSFRFQ 461
+K KKK +F
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQFT 25
Score = 25.9 bits (57), Expect = 3.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 433 KKKKKKKKKKKKKKKKKK 450
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.9 bits (57), Expect = 3.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 434 KKKKKKKKKKKKKKKKKK 451
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.9 bits (57), Expect = 3.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 435 KKKKKKKKKKKKKKKKKK 452
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.9 bits (57), Expect = 3.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 436 KKKKKKKKKKKKKKKKKK 453
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.9 bits (57), Expect = 3.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 437 KKKKKKKKKKKKKKKKKK 454
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.9 bits (57), Expect = 3.6
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 432 RKKKKKKKKKKKKKKKK 448
+K KKK
Sbjct: 3 SGSSGRKPPPKKKMTGT 19
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 27.4 bits (61), Expect = 1.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKK 450
+ + + +++K+++KK KKKKKK
Sbjct: 80 ELARKIAEIREQKREQKKDKKKKKK 104
Score = 27.0 bits (60), Expect = 1.6
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 433 KKKKKKKKKKKKKKKKKKKKKK 454
+K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
Score = 27.0 bits (60), Expect = 1.6
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 434 KKKKKKKKKKKKKKKKKKKKKK 455
+K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120
[TaxId: 103690]}
Length = 226
Score = 28.5 bits (63), Expect = 1.4
Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 19/210 (9%)
Query: 55 FASMWIFVMSALCCISTLMTLTTFLIDTERFKYPERPIVFLSGCYFMVS-IGYL-IRVSV 112
S+ ++ A I L F + + + ++ + S + Y+ + +
Sbjct: 3 LESLLHWIYVAGMTIGAL----HFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQ 58
Query: 113 GHEEVACED-QMVRY-GASGPTPCTLVFLLVYFF----GMSSYIWWVILSFTWFLAAGLK 166
G E A + RY TP L+ L + I +++ + + +GL
Sbjct: 59 GKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGL- 117
Query: 167 WGNEAIASYSLYFHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHN--IHNLKYFVV 224
+ + + Y W I V + +I+ + L +
Sbjct: 118 IADLSERDWVRYL----WYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFT 173
Query: 225 FPLIIYLILGIIFLFGGFISLFRIRNVIKN 254
I Y I+ II G I +
Sbjct: 174 VLWIGYPIVWIIGPSGFGWINQTIDTFLFC 203
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.4 bits (60), Expect = 1.5
Identities = 5/29 (17%), Positives = 20/29 (68%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ ++ K+ K+K ++ ++K+++++ +K
Sbjct: 75 LVLDDSKRLAKRKLIEENREKRRREELEK 103
Score = 25.9 bits (56), Expect = 5.1
Identities = 5/31 (16%), Positives = 19/31 (61%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKKKKKKK 453
+ ++R K+K ++ ++K+++++ +K
Sbjct: 73 TDLVLDDSKRLAKRKLIEENREKRRREELEK 103
Score = 25.5 bits (55), Expect = 6.7
Identities = 4/30 (13%), Positives = 16/30 (53%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + K+ K+K ++ ++K++++
Sbjct: 70 GMATDLVLDDSKRLAKRKLIEENREKRRRE 99
>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease
I-TevI {Bacteriophage T4 [TaxId: 10665]}
Length = 96
Score = 26.7 bits (59), Expect = 2.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 417 SLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKK 450
S + N + +H H + K K +K K KK KK
Sbjct: 23 SGENNSFFNHKHSDITKSKISEKMKGKKPSNIKK 56
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 28.1 bits (62), Expect = 2.2
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K E K+ + +K K+ + K
Sbjct: 223 KFEWHTLSKEYETQKVPKENAENYLIK 249
Score = 26.1 bits (57), Expect = 8.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 431 ERKKKKKKKKKKKKKKKKKKKKKKK 455
R K + K+ + +K K+ +
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAE 244
Score = 26.1 bits (57), Expect = 9.4
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 430 NERKKKKKKKKKKKKKKKKKKKKKKK 455
+ K+ + +K K+ + K +
Sbjct: 227 HTLSKEYETQKVPKENAENYLIKISE 252
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 27.7 bits (61), Expect = 3.1
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K E K+ K+ ++ +K K + K
Sbjct: 251 KEEYNKQAKQYQEYQKGNNYKMYSEFK 277
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 26.0 bits (57), Expect = 3.4
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 425 SHVH-----KNERKKKKKKKKKKKKKKKKKKKKKKKW 456
SH+H + K++ + KK KKK ++ K+W
Sbjct: 56 SHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRW 92
Score = 25.6 bits (56), Expect = 5.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 422 PYSSHVHKNERKKKKKKKKKKKKKKKKKKKK 452
+ +N R KK KKK ++ K+ K
Sbjct: 64 TEETLKQQNVRGMKKLDNYKKKDQETKRWLK 94
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium
salinarum [TaxId: 2242]}
Length = 227
Score = 27.3 bits (60), Expect = 3.6
Identities = 30/207 (14%), Positives = 58/207 (28%), Gaps = 18/207 (8%)
Query: 59 WIFVMSALCCISTLMTLTTFLIDTERFKYPE-RPIVFLSG--------CYF-MVSIGYLI 108
WI++ AL + FL+ P+ + ++ Y M+ L
Sbjct: 6 WIWL--ALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT 63
Query: 109 RVSVGHEEVACEDQMVRYGASGPTPCTLVFLLVYFFGMS-SYIWWVILSFTWFLAAGLKW 167
V G E+ RY T L+ L I ++ + + GL
Sbjct: 64 MVPFGGEQN--PIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVG 121
Query: 168 GNEAIASYSLYFHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHNIHNLKYFVVFPL 227
+ SY + + + +++ L+ V
Sbjct: 122 ALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVA---STFKVLRNVTVVLW 178
Query: 228 IIYLILGIIFLFGGFISLFRIRNVIKN 254
Y ++ +I G I I ++
Sbjct: 179 SAYPVVWLIGSEGAGIVPLNIETLLFM 205
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 26.7 bits (59), Expect = 4.1
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 428 HKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
N + +++ ++KK K+ + + + W
Sbjct: 66 EFNRKLREEARRKKYGIVLKEFRPEDQPW 94
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 26.8 bits (59), Expect = 4.3
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 426 HVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFRFQ 461
+N R++ K KK K+ + + K+ Q
Sbjct: 127 VAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQ 162
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 26.1 bits (57), Expect = 4.6
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
NE+++ + K KKK
Sbjct: 84 DNEKEQITQHIADLSSKAAGTPKKKAV 110
Score = 25.4 bits (55), Expect = 7.6
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 432 RKKKKKKKKKKKKKKKKKKKKKKK 455
+ K KKK + K
Sbjct: 91 TQHIADLSSKAAGTPKKKAVVQAK 114
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 25.5 bits (56), Expect = 4.7
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 434 KKKKKKKKKKKKKKKKKKKKKKWSFR 459
+ + KK +K K + +++ R
Sbjct: 58 EHGRGKKIYIRKYKSGVQYRRRTGHR 83
Score = 25.2 bits (55), Expect = 7.7
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 427 VHKNERKKKKKKKKKKKKKKKKKKKKKKKW 456
V ++ R KK +K K + +++ ++
Sbjct: 56 VVEHGRGKKIYIRKYKSGVQYRRRTGHRQN 85
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 27.3 bits (59), Expect = 4.7
Identities = 22/248 (8%), Positives = 53/248 (21%), Gaps = 3/248 (1%)
Query: 37 NNCAYPCQGIFFSQPEREFASMWIFVMSALCCISTLMTLTTFLIDTERFKYPERPIVFLS 96
P + R + S+ L + + ++
Sbjct: 120 TIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVD- 178
Query: 97 GCYFMVSIGYLIRVSVGHEEVACEDQMVRYGASGPTPCTL-VFLLVYFFGMSSYIWWVIL 155
+ + V Q V G TP ++ L +
Sbjct: 179 -AVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYW 237
Query: 156 SFTWFLAAGLKWGNEAIASYSLYFHLAAWLIPTVKSVSVIIMSAVDGDTIAGICYVGNHN 215
+ +++ +L L + ++ + I +
Sbjct: 238 DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGL 297
Query: 216 IHNLKYFVVFPLIIYLILGIIFLFGGFISLFRIRNVIKNQGGISNRTKADKLEKLMIRIG 275
V L + + +++ N + + R+G
Sbjct: 298 GKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVG 357
Query: 276 IFSVLSTL 283
I ST+
Sbjct: 358 IMGECSTV 365
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 26.9 bits (59), Expect = 5.4
Identities = 2/39 (5%), Positives = 8/39 (20%)
Query: 417 SLKQNPYSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKK 455
+ + PY + + + +
Sbjct: 86 AYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAA 124
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 25.4 bits (56), Expect = 6.0
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKK 454
K ++ KKK ++ + K+K K
Sbjct: 65 KGASDEEVKKKLEESNLTEYMKEKIK 90
Score = 24.7 bits (54), Expect = 9.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 433 KKKKKKKKKKKKKKKKKKKK 452
KKK ++ + K+K K +
Sbjct: 73 KKKLEESNLTEYMKEKIKIR 92
Score = 24.7 bits (54), Expect = 9.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 434 KKKKKKKKKKKKKKKKKKKK 453
KKK ++ + K+K K +
Sbjct: 73 KKKLEESNLTEYMKEKIKIR 92
Score = 24.7 bits (54), Expect = 9.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 435 KKKKKKKKKKKKKKKKKKKK 454
KKK ++ + K+K K +
Sbjct: 73 KKKLEESNLTEYMKEKIKIR 92
Score = 24.7 bits (54), Expect = 9.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 436 KKKKKKKKKKKKKKKKKKKK 455
KKK ++ + K+K K +
Sbjct: 73 KKKLEESNLTEYMKEKIKIR 92
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 26.5 bits (58), Expect = 6.8
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 429 KNERKKKKKKKKKKKKKKKKKKKKKKK 455
K + K KK +K +
Sbjct: 232 KKQWDVLSTKFSSVKKTQKIGTENIAT 258
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 26.1 bits (57), Expect = 7.3
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 401 IPAVPVMGGGAHSMTSSLKQNP-YSSHVHKNERKKKKKKKKKKKKKKKKKKKKKKKWSFR 459
+ K+ +N R++ KK K+ +K+ + K+
Sbjct: 99 LVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENE 158
Query: 460 FQ 461
Q
Sbjct: 159 IQ 160
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 26.1 bits (57), Expect = 8.1
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 394 PPPPNIPIPAVPVMGGGAHS 413
P ++P+P + ++ GG H+
Sbjct: 1 PGKYSMPVPMMNIINGGEHA 20
>d1vrma1 d.96.2.1 (A:44-352) Hypothetical protein TM1553 {Thermotoga
maritima [TaxId: 2336]}
Length = 309
Score = 26.5 bits (57), Expect = 8.3
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 127 GASGPTPCTLVFLLVYFFGMSSYIWWVILSFTWFLAAGLKWGNEAIASYSLYFHL----A 182
GP +++ + I + +A + + Y H+
Sbjct: 180 RIIGPKFGKYPWVIGVKDPRGDDVIDYIYLKSGAVATSGDYERYFVVDGVRYHHILDPST 239
Query: 183 AWLIPTVKSVSVIIMSAVDGDTIAGICYV 211
+ V SV++I A D ++ +V
Sbjct: 240 GYPARGVWSVTIIAEDATTADALSTAGFV 268
>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 169
Score = 25.5 bits (55), Expect = 9.6
Identities = 4/26 (15%), Positives = 15/26 (57%)
Query: 423 YSSHVHKNERKKKKKKKKKKKKKKKK 448
+ ++ +R + +KK +K+ +++
Sbjct: 143 FVDYLSTLKRDRIRKKLEKQHRQQAH 168
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 26.2 bits (56), Expect = 9.7
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 237 FLFGGFISLFRIRNVIKNQGGISNRTKADKLEKLMIRIGIFSVLST 282
I + + + I ++RIG+ +T
Sbjct: 321 VAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNAT 366
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 26.1 bits (57), Expect = 9.9
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 399 IPIPAVPVMGGGAHS 413
+P+PA V+ GG+H+
Sbjct: 5 LPVPAFNVINGGSHA 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.441
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,826,540
Number of extensions: 89472
Number of successful extensions: 1357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 126
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)